Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025206.t1 | XP_013463523.1 | 98.6 | 1083 | 15 | 0 | 1 | 1083 | 1 | 1083 | 0.00E+00 | 1803.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025206.t1 | B5X0I6 | 78.8 | 869 | 182 | 2 | 1 | 868 | 1 | 868 | 0.0e+00 | 1396.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025206.t1 | A0A072V869 | 98.6 | 1083 | 15 | 0 | 1 | 1083 | 1 | 1083 | 0.0e+00 | 1803.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene64820 | MS.gene025206 | PPI |
MS.gene24268 | MS.gene025206 | PPI |
MS.gene26972 | MS.gene025206 | PPI |
MS.gene56730 | MS.gene025206 | PPI |
MS.gene80691 | MS.gene025206 | PPI |
MS.gene66970 | MS.gene025206 | PPI |
MS.gene042595 | MS.gene025206 | PPI |
MS.gene67685 | MS.gene025206 | PPI |
MS.gene008348 | MS.gene025206 | PPI |
MS.gene29637 | MS.gene025206 | PPI |
MS.gene55174 | MS.gene025206 | PPI |
MS.gene05026 | MS.gene025206 | PPI |
MS.gene061575 | MS.gene025206 | PPI |
MS.gene80820 | MS.gene025206 | PPI |
MS.gene061960 | MS.gene025206 | PPI |
MS.gene27302 | MS.gene025206 | PPI |
MS.gene049685 | MS.gene025206 | PPI |
MS.gene063673 | MS.gene025206 | PPI |
MS.gene20541 | MS.gene025206 | PPI |
MS.gene87979 | MS.gene025206 | PPI |
MS.gene90689 | MS.gene025206 | PPI |
MS.gene67503 | MS.gene025206 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025206.t1 | MTR_2g041420 | 99.261 | 1083 | 8 | 0 | 1 | 1083 | 1 | 1083 | 0.0 | 2233 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 237 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAATGTCTCGCAATTATC+TGG | 0.164790 | 2.2:+46313985 | None:intergenic |
CTCAAACTTTGAAAAGGTTT+TGG | 0.174983 | 2.2:-46314016 | MS.gene025206:CDS |
AAGCTCTTGGTGATGGAATT+TGG | 0.184049 | 2.2:-46310929 | MS.gene025206:CDS |
TGATCAGTTTCGCCAGATTT+TGG | 0.213195 | 2.2:-46319242 | MS.gene025206:CDS |
GAATTTGTGTTTCCTTATTA+TGG | 0.240945 | 2.2:-46314919 | MS.gene025206:intron |
ATCATCGTTCATCTGAGTTT+GGG | 0.249473 | 2.2:+46304979 | None:intergenic |
ATCTTTCAGCTGTTGGAATT+AGG | 0.262771 | 2.2:-46315926 | MS.gene025206:intron |
ATTACAGGCATTTCTTGAAT+TGG | 0.268349 | 2.2:-46311340 | MS.gene025206:intron |
AAAGGAGGAGCATTTCATTT+TGG | 0.273049 | 2.2:-46318937 | MS.gene025206:CDS |
GACACTTGTCATTCACCTTC+AGG | 0.277390 | 2.2:+46309388 | None:intergenic |
CACCCTCAAACTACACATTA+AGG | 0.280595 | 2.2:-46307400 | MS.gene025206:CDS |
CATCATCGTTCATCTGAGTT+TGG | 0.283046 | 2.2:+46304978 | None:intergenic |
CTTGAGCAATTAAATGAATC+TGG | 0.290208 | 2.2:-46310747 | MS.gene025206:CDS |
TAGCTTTCCTAATGAATTCA+TGG | 0.293410 | 2.2:+46312783 | None:intergenic |
GGCAACACAATATTACAATA+AGG | 0.313065 | 2.2:-46318916 | MS.gene025206:CDS |
AGAATTCTGAAGAGGAAGTT+AGG | 0.313979 | 2.2:-46323026 | MS.gene025206:CDS |
ATTTAATTGCTCAAGTAATC+TGG | 0.318906 | 2.2:+46310755 | None:intergenic |
GACAATGTTCCTGCTCTTCT+AGG | 0.320276 | 2.2:-46318505 | MS.gene025206:CDS |
TCAACAGACTGTTCTCTTAC+AGG | 0.322492 | 2.2:+46304462 | None:intergenic |
GGACTCGTTTGCCTCATTAT+TGG | 0.323538 | 2.2:+46304483 | None:intergenic |
ATTGAATTACTCAATAATAT+TGG | 0.325278 | 2.2:-46311091 | MS.gene025206:CDS |
ATCAGCAACTGACCATAATA+AGG | 0.347015 | 2.2:+46314907 | None:intergenic |
GCTTCCAACCTACATATTCA+TGG | 0.349041 | 2.2:-46306552 | MS.gene025206:CDS |
AGGAGAGTGATGGAGAAATC+AGG | 0.354875 | 2.2:-46304434 | MS.gene025206:CDS |
CATTCTATTAAGCATTGAAT+TGG | 0.355555 | 2.2:-46309884 | MS.gene025206:intron |
AACAAGCTCCTCTCGATCTT+TGG | 0.357089 | 2.2:-46322945 | MS.gene025206:CDS |
TGAAGAGCAAAGAAAGATTC+AGG | 0.359712 | 2.2:-46306367 | MS.gene025206:intron |
GGCTGATATGATGGATGAAC+AGG | 0.360374 | 2.2:-46305044 | MS.gene025206:CDS |
AAATGAGTAGCTTCTAGCTT+TGG | 0.363956 | 2.2:+46309053 | None:intergenic |
GGTCTATGTCGCTACAAATT+AGG | 0.365036 | 2.2:-46316271 | MS.gene025206:CDS |
GCATGAGGACGAATTGAAAA+TGG | 0.367183 | 2.2:-46306234 | MS.gene025206:CDS |
TAGGTGAGAGCAACGGTTGC+AGG | 0.369321 | 2.2:-46306615 | MS.gene025206:CDS |
CATGGTGACCGTTACTTTCA+AGG | 0.372464 | 2.2:+46310820 | None:intergenic |
GCCACTGTTCCGCTTCATAA+TGG | 0.372932 | 2.2:+46307462 | None:intergenic |
ATACTGCACCCACTTACTTT+CGG | 0.378856 | 2.2:-46306496 | MS.gene025206:CDS |
AAGAGAACAGTCTGTTGATA+TGG | 0.382003 | 2.2:-46304457 | MS.gene025206:CDS |
AGATATGCATCAATGTAGTC+TGG | 0.385929 | 2.2:+46309940 | None:intergenic |
GCAAATCATTTCTTCTTCAC+TGG | 0.386727 | 2.2:-46315834 | MS.gene025206:CDS |
TTACAGGCATTTCTTGAATT+GGG | 0.393382 | 2.2:-46311339 | MS.gene025206:intron |
CCACTGTTCCGCTTCATAAT+GGG | 0.394229 | 2.2:+46307463 | None:intergenic |
TCTTGTTGCACTTGCAATCA+TGG | 0.396500 | 2.2:-46316092 | MS.gene025206:CDS |
AAAGCTAGAAGCTACTCATT+TGG | 0.397882 | 2.2:-46309051 | MS.gene025206:CDS |
AACACGCTCAAATGCCTGTC+GGG | 0.399209 | 2.2:+46316234 | None:intergenic |
TGATTCGCTTGAGTTGTATA+AGG | 0.399501 | 2.2:-46317176 | MS.gene025206:intron |
GCATTTAAGATCGTGTTAGA+TGG | 0.401293 | 2.2:-46318535 | MS.gene025206:CDS |
TACTTCTACACTTCAATTCA+AGG | 0.404433 | 2.2:-46310862 | MS.gene025206:CDS |
CACGGTCTTCTCGCATTAGC+TGG | 0.405913 | 2.2:-46304944 | MS.gene025206:CDS |
TGTGATATGAATAGGGAAAC+TGG | 0.409251 | 2.2:-46309112 | MS.gene025206:intron |
ATATCGCCTAATCTTGTTCA+AGG | 0.410545 | 2.2:-46310709 | MS.gene025206:intron |
AATAAGGAAACACAAATTCA+TGG | 0.416035 | 2.2:+46314923 | None:intergenic |
GAGACAGGAACTTGCTCGTC+AGG | 0.417270 | 2.2:-46306421 | MS.gene025206:CDS |
TAATAAGAATGAGACTTTGT+TGG | 0.418797 | 2.2:+46315753 | None:intergenic |
TGCCTGCCTCCGCCTGCTAA+TGG | 0.420567 | 2.2:+46304530 | None:intergenic |
TTATCCAAACGTCAGGCATC+TGG | 0.420793 | 2.2:+46307709 | None:intergenic |
AGCAAAGGGTGAAGTTGAAC+AGG | 0.420821 | 2.2:-46318566 | MS.gene025206:CDS |
TAGATCCTTCCTCCAAAATC+TGG | 0.421174 | 2.2:+46319230 | None:intergenic |
TGCACTCTCAAACTTTGAAA+AGG | 0.423467 | 2.2:-46314022 | MS.gene025206:CDS |
TTGTCCAGATGCCTGACGTT+TGG | 0.425536 | 2.2:-46307713 | MS.gene025206:CDS |
CCCAGCATAGATAATGCATT+TGG | 0.427360 | 2.2:+46309366 | None:intergenic |
ACAAGGGCCATGAATTCATT+AGG | 0.428291 | 2.2:-46312790 | MS.gene025206:CDS |
CCTCCGCCTGCTAATGGTTG+AGG | 0.428569 | 2.2:+46304536 | None:intergenic |
CTCACAGCTGCAGGGCAATT+CGG | 0.430397 | 2.2:+46316304 | None:intergenic |
AAGCATCACCTGGGCATCAC+GGG | 0.431312 | 2.2:+46312748 | None:intergenic |
AATGAATTCATGGCCCTTGT+CGG | 0.434961 | 2.2:+46312793 | None:intergenic |
GTTTGAAAGGGGAGAATTTG+AGG | 0.435099 | 2.2:-46311059 | MS.gene025206:intron |
TCCTCTTCAGAATTCTGAAC+CGG | 0.442767 | 2.2:+46323033 | None:intergenic |
CCCTCTACTTGGGTTGGAAA+AGG | 0.447245 | 2.2:-46318870 | MS.gene025206:intron |
ATTGAAAATGGTGCAACAAC+AGG | 0.449547 | 2.2:-46306222 | MS.gene025206:CDS |
TTCAGCATCAACCCTTCAAA+AGG | 0.450465 | 2.2:-46307348 | MS.gene025206:CDS |
CAAATTAGGTCAATTTGAAA+AGG | 0.454791 | 2.2:-46316257 | MS.gene025206:CDS |
AAACCTTAATGTGTAGTTTG+AGG | 0.456515 | 2.2:+46307397 | None:intergenic |
AACCTTAATGTGTAGTTTGA+GGG | 0.457259 | 2.2:+46307398 | None:intergenic |
AACCATTAGCAGGCGGAGGC+AGG | 0.459253 | 2.2:-46304532 | MS.gene025206:CDS |
GGAACTACTTTGCTGCAGTT+AGG | 0.460007 | 2.2:-46309091 | MS.gene025206:CDS |
AGACTTTGTTGGACCATGAT+TGG | 0.460216 | 2.2:+46315764 | None:intergenic |
ACACTTGTCATTCACCTTCA+GGG | 0.464528 | 2.2:+46309389 | None:intergenic |
GGAGAGTGATGGAGAAATCA+GGG | 0.464663 | 2.2:-46304433 | MS.gene025206:CDS |
GGACAAGTACAGATTAAGTT+GGG | 0.467799 | 2.2:-46314057 | MS.gene025206:CDS |
TATGATGGATGAACAGGAAA+TGG | 0.467895 | 2.2:-46305038 | MS.gene025206:CDS |
GCATTAGCTGTTACCAATCA+TGG | 0.468530 | 2.2:-46315777 | MS.gene025206:CDS |
TGCCCTGCAGCTGTGAGACT+TGG | 0.468768 | 2.2:-46316298 | MS.gene025206:CDS |
CTCCGCCTGCTAATGGTTGA+GGG | 0.469937 | 2.2:+46304537 | None:intergenic |
GCCTGACGTTTGGATAAATC+TGG | 0.474134 | 2.2:-46307703 | MS.gene025206:CDS |
TCCAAATGCATTATCTATGC+TGG | 0.474432 | 2.2:-46309367 | MS.gene025206:CDS |
GTCCGACACAGGAGCTGCAC+TGG | 0.475287 | 2.2:-46311301 | MS.gene025206:CDS |
TTGGTGTCCTTCAGTTTGAA+AGG | 0.476012 | 2.2:-46311072 | MS.gene025206:CDS |
TTTAAGGAAGCTCTTGGTGA+TGG | 0.479020 | 2.2:-46310936 | MS.gene025206:CDS |
AGAGACAAAACAAAGAGAAA+AGG | 0.480273 | 2.2:-46318955 | MS.gene025206:CDS |
AGGTGGAAAGAGGAGGAAGA+AGG | 0.482244 | 2.2:-46305107 | MS.gene025206:CDS |
TTCAAAAGATATCTTTGCAC+AGG | 0.482825 | 2.2:-46307849 | MS.gene025206:intron |
ACATGCACGAGCCCTCTACT+TGG | 0.483852 | 2.2:-46318881 | MS.gene025206:CDS |
GGCTGAGGAAGCACGGCGCA+AGG | 0.486164 | 2.2:-46306391 | MS.gene025206:CDS |
TGGTGTCCTTCAGTTTGAAA+GGG | 0.486387 | 2.2:-46311071 | MS.gene025206:CDS |
CAGTGGCATCACTCGCTCTC+CGG | 0.487534 | 2.2:+46309295 | None:intergenic |
GGGACAAGTACAGATTAAGT+TGG | 0.488557 | 2.2:-46314058 | MS.gene025206:CDS |
ATTCCAAGTCTCACAGCTGC+AGG | 0.489740 | 2.2:+46316295 | None:intergenic |
ACTTGCTCGTCAGGTTGCAT+TGG | 0.490048 | 2.2:-46306412 | MS.gene025206:CDS |
AGAGAAGAAAAGGTGGAAAG+AGG | 0.490094 | 2.2:-46305117 | MS.gene025206:CDS |
ATATTATTGAGTAATTCAAT+TGG | 0.491591 | 2.2:+46311094 | None:intergenic |
AGAAACAGAGGCTGATATGA+TGG | 0.492446 | 2.2:-46305053 | MS.gene025206:CDS |
GACCTCCCTCAACCATTAGC+AGG | 0.493021 | 2.2:-46304542 | MS.gene025206:CDS |
TTGCTATCTTAAATGCCCTC+GGG | 0.495001 | 2.2:-46319004 | MS.gene025206:CDS |
CACGAGCCCTCTACTTGGGT+TGG | 0.498622 | 2.2:-46318876 | MS.gene025206:CDS |
TGTAGAAGTAGCAGCATCGA+TGG | 0.499015 | 2.2:+46310875 | None:intergenic |
TACACATTAAGGTTTGATGC+AGG | 0.502650 | 2.2:-46307389 | MS.gene025206:CDS |
AGAAGCTACTCATTTGGAAA+AGG | 0.503503 | 2.2:-46309045 | MS.gene025206:CDS |
ATAAGGAAACACAAATTCAT+GGG | 0.505012 | 2.2:+46314924 | None:intergenic |
ATTCTCCCCTTTCAAACTGA+AGG | 0.505407 | 2.2:+46311065 | None:intergenic |
GCAGCTGTGAGACTTGGAAT+AGG | 0.507108 | 2.2:-46316292 | MS.gene025206:CDS |
TCTACAGAGAGCCATCCATT+TGG | 0.507314 | 2.2:-46307423 | MS.gene025206:CDS |
GCCAGATTTATCCAAACGTC+AGG | 0.507859 | 2.2:+46307702 | None:intergenic |
CTTCATAATGGGTACGAGCC+AGG | 0.509207 | 2.2:+46307474 | None:intergenic |
ACAACAAATACGGCAGAGAC+AGG | 0.509727 | 2.2:-46306436 | MS.gene025206:CDS |
GAATTCTGAAGAGGAAGTTA+GGG | 0.511282 | 2.2:-46323025 | MS.gene025206:CDS |
CACATTAAGGTTTGATGCAG+GGG | 0.511303 | 2.2:-46307387 | MS.gene025206:CDS |
TCAATTTGAAAAGGCCCGAC+AGG | 0.516709 | 2.2:-46316248 | MS.gene025206:CDS |
AATTGATCCCCGTGATGCCC+AGG | 0.519992 | 2.2:-46312756 | MS.gene025206:intron |
GAAGAAAAGGTGGAAAGAGG+AGG | 0.522338 | 2.2:-46305114 | MS.gene025206:CDS |
CATCAAATCCATGAATATGT+AGG | 0.524899 | 2.2:+46306544 | None:intergenic |
TGTTCCTGCTCTTCTAGGCC+AGG | 0.525188 | 2.2:-46318500 | MS.gene025206:intron |
ATTGCTCAAGTAATCTGGCC+AGG | 0.525556 | 2.2:+46310760 | None:intergenic |
CATTATTGGCTGATCGTCGT+CGG | 0.525611 | 2.2:+46304497 | None:intergenic |
TTGAGAGCCATTGCACAGTA+CGG | 0.527044 | 2.2:+46315864 | None:intergenic |
TCAATGTCTCGCAATTATCT+GGG | 0.528058 | 2.2:+46313986 | None:intergenic |
CACATTCAAAACGGAGGGAA+AGG | 0.531936 | 2.2:-46305174 | MS.gene025206:CDS |
AATGGCATCGGTGTATATAC+CGG | 0.532136 | 2.2:-46323052 | MS.gene025206:CDS |
TATACCTGGCCTAGAAGAGC+AGG | 0.532144 | 2.2:+46318496 | None:intergenic |
GACAAAACAAAGAGAAAAGG+AGG | 0.534666 | 2.2:-46318952 | MS.gene025206:CDS |
TCAGCTGTTGGAATTAGGAA+AGG | 0.536484 | 2.2:-46315921 | MS.gene025206:intron |
AGCTAATGCGAGAAGACCGT+GGG | 0.536949 | 2.2:+46304946 | None:intergenic |
GGGGCTTACTATAGCTACCT+TGG | 0.537951 | 2.2:-46318984 | MS.gene025206:CDS |
GAGCGAGTGATGCCACTGAC+GGG | 0.541714 | 2.2:-46309290 | MS.gene025206:CDS |
TGAGAGCCATTGCACAGTAC+GGG | 0.544473 | 2.2:+46315865 | None:intergenic |
AGAATATCAGAAGCATCCCT+TGG | 0.546018 | 2.2:+46322985 | None:intergenic |
ATTATCTATGCTGGGTGAGT+TGG | 0.549414 | 2.2:-46309358 | MS.gene025206:CDS |
GAGAAGAGACATGAAGATGA+TGG | 0.549944 | 2.2:-46304408 | MS.gene025206:CDS |
TTGGAGGAAGGATCTAGTCC+AGG | 0.550403 | 2.2:-46319223 | MS.gene025206:intron |
AAATCCATGAATATGTAGGT+TGG | 0.551401 | 2.2:+46306548 | None:intergenic |
GCAGAGGGAGTACTTCAAGC+AGG | 0.552092 | 2.2:-46319272 | MS.gene025206:intron |
TCGTCAGGTTGCATTGGCTG+AGG | 0.552322 | 2.2:-46306406 | MS.gene025206:CDS |
TTAGGTTAATGATGCCCTGA+AGG | 0.552937 | 2.2:-46309403 | MS.gene025206:intron |
TGAAGGCAAAAGAAACTCTC+CGG | 0.554640 | 2.2:-46309314 | MS.gene025206:CDS |
ATTTGCATTTCTAGGAACAA+TGG | 0.555331 | 2.2:-46305207 | MS.gene025206:intron |
TTCTGATGCAGATGATGAGC+CGG | 0.555342 | 2.2:-46304912 | MS.gene025206:intron |
CTCACAAATACTTCTATACC+TGG | 0.556946 | 2.2:-46307492 | MS.gene025206:CDS |
ACGACGATCAGCCAATAATG+AGG | 0.557882 | 2.2:-46304494 | MS.gene025206:CDS |
AGTCCCACCGTCTTCATCAT+CGG | 0.558633 | 2.2:+46305150 | None:intergenic |
AACGTGAAGAACAACAAATA+CGG | 0.559581 | 2.2:-46306446 | MS.gene025206:CDS |
ATTGCTATCTTAAATGCCCT+CGG | 0.560013 | 2.2:-46319005 | MS.gene025206:CDS |
GAAGCATCACCTGGGCATCA+CGG | 0.560742 | 2.2:+46312747 | None:intergenic |
AATATTACAATAAGGCATCA+AGG | 0.561837 | 2.2:-46318908 | MS.gene025206:CDS |
TTGCATTGGCTGAGGAAGCA+CGG | 0.565516 | 2.2:-46306398 | MS.gene025206:CDS |
GCTAATTTATATGCTGCCAA+TGG | 0.567464 | 2.2:-46307911 | MS.gene025206:CDS |
ACACATTAAGGTTTGATGCA+GGG | 0.567536 | 2.2:-46307388 | MS.gene025206:CDS |
AAGAAGATTGACACTCATGT+TGG | 0.569285 | 2.2:-46306519 | MS.gene025206:CDS |
AGAAGCTTCTGACCTTGCTA+TGG | 0.569338 | 2.2:+46315712 | None:intergenic |
GCATACATATATGTTCAGCT+TGG | 0.569437 | 2.2:-46312821 | MS.gene025206:CDS |
ATGGACTTGCGCTCTAACGA+AGG | 0.569767 | 2.2:-46316073 | MS.gene025206:intron |
GTCATACCTTGAACAAGATT+AGG | 0.570382 | 2.2:+46310703 | None:intergenic |
TAAAGCTGGGGTGTATTACA+TGG | 0.571200 | 2.2:-46314971 | MS.gene025206:CDS |
AGGTGAGAGCAACGGTTGCA+GGG | 0.571421 | 2.2:-46306614 | MS.gene025206:CDS |
TACTCATTTGGAAAAGGCGA+AGG | 0.575272 | 2.2:-46309039 | MS.gene025206:CDS |
GTATTACATGGCATCTGTCA+AGG | 0.576232 | 2.2:-46314959 | MS.gene025206:CDS |
TTGGCTTTCTTTCTTTAGCG+AGG | 0.577716 | 2.2:-46310910 | MS.gene025206:CDS |
TCATCGTTCATCTGAGTTTG+GGG | 0.579284 | 2.2:+46304980 | None:intergenic |
GATATGCATCAATGTAGTCT+GGG | 0.579999 | 2.2:+46309941 | None:intergenic |
TCTCGCATTAGCTGGACTTG+AGG | 0.580974 | 2.2:-46304936 | MS.gene025206:CDS |
TTAATCTCGATCAACTTCCA+AGG | 0.583866 | 2.2:-46323002 | MS.gene025206:CDS |
ATATGAGTCCTTCCCGTCAG+TGG | 0.585495 | 2.2:+46309278 | None:intergenic |
AGAGCAGCACACATTCAAAA+CGG | 0.586172 | 2.2:-46305183 | MS.gene025206:CDS |
GAGGCTAGCGGCTATTGCAA+AGG | 0.587953 | 2.2:-46309917 | MS.gene025206:CDS |
CCTCAACCATTAGCAGGCGG+AGG | 0.588394 | 2.2:-46304536 | MS.gene025206:CDS |
TGTAGTTTGAGGGTGCCAAA+TGG | 0.590613 | 2.2:+46307408 | None:intergenic |
GAAAATGGTGCAACAACAGG+AGG | 0.592190 | 2.2:-46306219 | MS.gene025206:CDS |
TAGCGGCTATTGCAAAGGCT+CGG | 0.592892 | 2.2:-46309912 | MS.gene025206:CDS |
AGAACAGTCTGTTGATATGG+AGG | 0.593278 | 2.2:-46304454 | MS.gene025206:CDS |
CCCATTATGAAGCGGAACAG+TGG | 0.594005 | 2.2:-46307463 | MS.gene025206:CDS |
GTCACCATGTTGAAGTACCA+TGG | 0.596528 | 2.2:-46310806 | MS.gene025206:CDS |
TGTTGGAATTAGGAAAGGAA+TGG | 0.596800 | 2.2:-46315916 | MS.gene025206:CDS |
AGCACGCTCTTACCATAGCA+AGG | 0.597396 | 2.2:-46315724 | MS.gene025206:intron |
AGAGCGAGTGATGCCACTGA+CGG | 0.599695 | 2.2:-46309291 | MS.gene025206:CDS |
ACTGAATCAATCAATGGCAT+CGG | 0.600039 | 2.2:-46323064 | None:intergenic |
GAGTGATGCCACTGACGGGA+AGG | 0.603327 | 2.2:-46309286 | MS.gene025206:CDS |
CCAAATGCATTATCTATGCT+GGG | 0.603589 | 2.2:-46309366 | MS.gene025206:CDS |
CATGCACGAGCCCTCTACTT+GGG | 0.603881 | 2.2:-46318880 | MS.gene025206:CDS |
ATCCAGTGCAGCTCCTGTGT+CGG | 0.604801 | 2.2:+46311299 | None:intergenic |
GGTGTCCTTCAGTTTGAAAG+GGG | 0.610316 | 2.2:-46311070 | MS.gene025206:CDS |
TTCCAAGTCTCACAGCTGCA+GGG | 0.614463 | 2.2:+46316296 | None:intergenic |
CAGCACACATTCAAAACGGA+GGG | 0.615167 | 2.2:-46305179 | MS.gene025206:CDS |
GTTGATATGGAGGAGAGTGA+TGG | 0.616014 | 2.2:-46304444 | MS.gene025206:CDS |
GCTATACCCGTACTGTGCAA+TGG | 0.616669 | 2.2:-46315871 | MS.gene025206:CDS |
GATGGATGAACAGGAAATGG+AGG | 0.616780 | 2.2:-46305035 | MS.gene025206:CDS |
GGCTCGTACCCATTATGAAG+CGG | 0.617210 | 2.2:-46307471 | MS.gene025206:CDS |
GAAAGGTCCGATGATGAAGA+CGG | 0.621871 | 2.2:-46305157 | MS.gene025206:CDS |
TCACCATGTTGAAGTACCAT+GGG | 0.623369 | 2.2:-46310805 | MS.gene025206:CDS |
TCAGCTTGGTCAAACCGACA+AGG | 0.623453 | 2.2:-46312807 | MS.gene025206:CDS |
TAATCTCGATCAACTTCCAA+GGG | 0.624605 | 2.2:-46323001 | MS.gene025206:CDS |
TTTCACGACCTTGAAAGTAA+CGG | 0.625299 | 2.2:-46310828 | MS.gene025206:CDS |
GTTTGAGGGTGCCAAATGGA+TGG | 0.627665 | 2.2:+46307412 | None:intergenic |
CGATCTTTGGCTCATTATCG+CGG | 0.631109 | 2.2:-46322932 | MS.gene025206:intron |
ACCGGTTCAGAATTCTGAAG+AGG | 0.631734 | 2.2:-46323034 | MS.gene025206:CDS |
CAGAGGGAGTACTTCAAGCA+GGG | 0.632688 | 2.2:-46319271 | MS.gene025206:CDS |
TGCTATCTTAAATGCCCTCG+GGG | 0.634283 | 2.2:-46319003 | MS.gene025206:CDS |
TGCAGTATCAGAATTGCTTG+CGG | 0.640197 | 2.2:-46307535 | MS.gene025206:intron |
GGTCCGATGATGAAGACGGT+GGG | 0.641442 | 2.2:-46305153 | MS.gene025206:CDS |
AAACACGCTCAAATGCCTGT+CGG | 0.642330 | 2.2:+46316233 | None:intergenic |
ATATGCTGCCAATGGTGCTG+CGG | 0.642461 | 2.2:-46307903 | MS.gene025206:CDS |
AGCATCACCTGGGCATCACG+GGG | 0.646234 | 2.2:+46312749 | None:intergenic |
CAGCTTGGTCAAACCGACAA+GGG | 0.647963 | 2.2:-46312806 | MS.gene025206:CDS |
GCGAATCAGAAAATCTTCCA+CGG | 0.648266 | 2.2:+46317191 | None:intergenic |
CGCCTGCTAATGGTTGAGGG+AGG | 0.651946 | 2.2:+46304540 | None:intergenic |
CAGCTAATGCGAGAAGACCG+TGG | 0.652542 | 2.2:+46304945 | None:intergenic |
AGGTCCGATGATGAAGACGG+TGG | 0.655582 | 2.2:-46305154 | MS.gene025206:CDS |
AGTCACAGTACTCTTTAACC+TGG | 0.656054 | 2.2:-46310778 | MS.gene025206:CDS |
CTCCCTCAACCATTAGCAGG+CGG | 0.656807 | 2.2:-46304539 | MS.gene025206:CDS |
AACTCAGATGAACGATGATG+AGG | 0.658421 | 2.2:-46304975 | MS.gene025206:CDS |
TATCCCATGGTACTTCAACA+TGG | 0.661108 | 2.2:+46310802 | None:intergenic |
TGTTGACATGAACTCAAGAG+AGG | 0.662615 | 2.2:-46305005 | MS.gene025206:CDS |
TGATGCATATCTGAGGCTAG+CGG | 0.669165 | 2.2:-46309929 | MS.gene025206:CDS |
TGAAGATGATGGCAGTGATG+AGG | 0.670943 | 2.2:-46304397 | MS.gene025206:CDS |
TAAGGAAACACAAATTCATG+GGG | 0.672819 | 2.2:+46314925 | None:intergenic |
GCAGCACACATTCAAAACGG+AGG | 0.672994 | 2.2:-46305180 | MS.gene025206:CDS |
ATAATGAGCCAAAGATCGAG+AGG | 0.675955 | 2.2:+46322937 | None:intergenic |
ACTACATTGATGCATATCTG+AGG | 0.679632 | 2.2:-46309936 | MS.gene025206:CDS |
CAATGACACAGAAGAAACAG+AGG | 0.683420 | 2.2:-46305065 | MS.gene025206:CDS |
ATGCTGATATTAGATACGAG+AGG | 0.684728 | 2.2:-46319028 | MS.gene025206:CDS |
CAGGTTCAAGAAGCTGCCAG+TGG | 0.687409 | 2.2:-46307744 | MS.gene025206:CDS |
AGTACTGTGACTTTATCCCA+TGG | 0.687951 | 2.2:+46310789 | None:intergenic |
GATGGACAGAAGAAAGCATG+AGG | 0.688027 | 2.2:-46306249 | MS.gene025206:CDS |
GCATGTGTTGAGTTCAACCG+TGG | 0.688407 | 2.2:-46317208 | MS.gene025206:CDS |
GTAGCTATAGTAAGCCCCGA+GGG | 0.688854 | 2.2:+46318989 | None:intergenic |
TAAATGTTAGGTGAGAGCAA+CGG | 0.691545 | 2.2:-46306622 | MS.gene025206:intron |
CAACCCTTCAAAAGGCAAAG+CGG | 0.696853 | 2.2:-46307340 | MS.gene025206:CDS |
GCTTGATCCAGAAAATGTCG+AGG | 0.707537 | 2.2:-46316116 | MS.gene025206:CDS |
GATGATGAGGAAAATCCCCA+CGG | 0.710699 | 2.2:-46304962 | MS.gene025206:CDS |
GGTAGCTATAGTAAGCCCCG+AGG | 0.773062 | 2.2:+46318988 | None:intergenic |
GCTAATGCGAGAAGACCGTG+GGG | 0.786540 | 2.2:+46304947 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 46304389 | 46323073 | 46304389 | ID=MS.gene025206 |
chr2.2 | mRNA | 46304389 | 46323073 | 46304389 | ID=MS.gene025206.t1;Parent=MS.gene025206 |
chr2.2 | exon | 46322933 | 46323073 | 46322933 | ID=MS.gene025206.t1.exon1;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46322933 | 46323073 | 46322933 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46319224 | 46319290 | 46319224 | ID=MS.gene025206.t1.exon2;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46319224 | 46319290 | 46319224 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46318871 | 46319065 | 46318871 | ID=MS.gene025206.t1.exon3;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46318871 | 46319065 | 46318871 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46318501 | 46318601 | 46318501 | ID=MS.gene025206.t1.exon4;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46318501 | 46318601 | 46318501 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46317177 | 46317230 | 46317177 | ID=MS.gene025206.t1.exon5;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46317177 | 46317230 | 46317177 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46316228 | 46316344 | 46316228 | ID=MS.gene025206.t1.exon6;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46316228 | 46316344 | 46316228 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46316074 | 46316137 | 46316074 | ID=MS.gene025206.t1.exon7;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46316074 | 46316137 | 46316074 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46315725 | 46315939 | 46315725 | ID=MS.gene025206.t1.exon8;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46315725 | 46315939 | 46315725 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46314920 | 46315004 | 46314920 | ID=MS.gene025206.t1.exon9;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46314920 | 46315004 | 46314920 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46313984 | 46314084 | 46313984 | ID=MS.gene025206.t1.exon10;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46313984 | 46314084 | 46313984 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46312757 | 46312849 | 46312757 | ID=MS.gene025206.t1.exon11;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46312757 | 46312849 | 46312757 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46311287 | 46311355 | 46311287 | ID=MS.gene025206.t1.exon12;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46311287 | 46311355 | 46311287 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46311060 | 46311152 | 46311060 | ID=MS.gene025206.t1.exon13;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46311060 | 46311152 | 46311060 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46310710 | 46310973 | 46310710 | ID=MS.gene025206.t1.exon14;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46310710 | 46310973 | 46310710 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46309885 | 46309965 | 46309885 | ID=MS.gene025206.t1.exon15;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46309885 | 46309965 | 46309885 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46309263 | 46309421 | 46309263 | ID=MS.gene025206.t1.exon16;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46309263 | 46309421 | 46309263 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46309025 | 46309120 | 46309025 | ID=MS.gene025206.t1.exon17;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46309025 | 46309120 | 46309025 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46307850 | 46307951 | 46307850 | ID=MS.gene025206.t1.exon18;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46307850 | 46307951 | 46307850 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46307656 | 46307763 | 46307656 | ID=MS.gene025206.t1.exon19;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46307656 | 46307763 | 46307656 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46307328 | 46307552 | 46307328 | ID=MS.gene025206.t1.exon20;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46307328 | 46307552 | 46307328 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46306368 | 46306634 | 46306368 | ID=MS.gene025206.t1.exon21;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46306368 | 46306634 | 46306368 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46306199 | 46306270 | 46306199 | ID=MS.gene025206.t1.exon22;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46306199 | 46306270 | 46306199 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46304913 | 46305215 | 46304913 | ID=MS.gene025206.t1.exon23;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46304913 | 46305215 | 46304913 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
chr2.2 | exon | 46304389 | 46304568 | 46304389 | ID=MS.gene025206.t1.exon24;Parent=MS.gene025206.t1 |
chr2.2 | CDS | 46304389 | 46304568 | 46304389 | ID=cds.MS.gene025206.t1;Parent=MS.gene025206.t1 |
Gene Sequence |
Protein sequence |