Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26972.t1 | XP_013466118.1 | 99.8 | 643 | 1 | 0 | 1 | 643 | 1 | 643 | 0.00E+00 | 1096.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26972.t1 | O04235 | 92.4 | 644 | 46 | 3 | 1 | 643 | 1 | 642 | 1.4e-302 | 1039.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26972.t1 | A0A072VEB0 | 99.8 | 643 | 1 | 0 | 1 | 643 | 1 | 643 | 0.0e+00 | 1096.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene26972.t1 | TR | HMG |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene26972 | 0.845531 | 3.83E-59 | -1.69E-46 |
MS.gene049159 | MS.gene26972 | 0.828749 | 7.56E-55 | -1.69E-46 |
MS.gene049190 | MS.gene26972 | 0.822963 | 1.79E-53 | -1.69E-46 |
MS.gene049341 | MS.gene26972 | 0.843064 | 1.76E-58 | -1.69E-46 |
MS.gene049368 | MS.gene26972 | 0.802988 | 4.32E-49 | -1.69E-46 |
MS.gene049382 | MS.gene26972 | 0.803349 | 3.64E-49 | -1.69E-46 |
MS.gene049404 | MS.gene26972 | 0.835136 | 2.00E-56 | -1.69E-46 |
MS.gene049807 | MS.gene26972 | 0.806948 | 6.42E-50 | -1.69E-46 |
MS.gene049821 | MS.gene26972 | 0.813928 | 2.00E-51 | -1.69E-46 |
MS.gene049824 | MS.gene26972 | 0.833162 | 6.25E-56 | -1.69E-46 |
MS.gene049825 | MS.gene26972 | 0.804194 | 2.43E-49 | -1.69E-46 |
MS.gene049850 | MS.gene26972 | 0.858178 | 9.85E-63 | -1.69E-46 |
MS.gene049887 | MS.gene26972 | 0.809541 | 1.80E-50 | -1.69E-46 |
MS.gene049979 | MS.gene26972 | 0.826278 | 2.96E-54 | -1.69E-46 |
MS.gene050020 | MS.gene26972 | 0.840339 | 9.23E-58 | -1.69E-46 |
MS.gene05016 | MS.gene26972 | 0.818773 | 1.65E-52 | -1.69E-46 |
MS.gene050442 | MS.gene26972 | 0.808081 | 3.69E-50 | -1.69E-46 |
MS.gene05045 | MS.gene26972 | 0.800869 | 1.18E-48 | -1.69E-46 |
MS.gene050551 | MS.gene26972 | 0.830415 | 2.97E-55 | -1.69E-46 |
MS.gene050689 | MS.gene26972 | 0.847824 | 9.06E-60 | -1.69E-46 |
MS.gene050719 | MS.gene26972 | 0.810832 | 9.47E-51 | -1.69E-46 |
MS.gene050721 | MS.gene26972 | 0.807114 | 5.92E-50 | -1.69E-46 |
MS.gene050724 | MS.gene26972 | 0.803372 | 3.60E-49 | -1.69E-46 |
MS.gene050778 | MS.gene26972 | 0.807256 | 5.52E-50 | -1.69E-46 |
MS.gene050807 | MS.gene26972 | 0.863489 | 2.40E-64 | -1.69E-46 |
MS.gene050808 | MS.gene26972 | 0.819723 | 1.00E-52 | -1.69E-46 |
MS.gene050838 | MS.gene26972 | 0.80905 | 2.29E-50 | -1.69E-46 |
MS.gene050959 | MS.gene26972 | 0.830266 | 3.24E-55 | -1.69E-46 |
MS.gene051102 | MS.gene26972 | 0.828861 | 7.10E-55 | -1.69E-46 |
MS.gene051180 | MS.gene26972 | 0.829746 | 4.33E-55 | -1.69E-46 |
MS.gene051198 | MS.gene26972 | 0.822236 | 2.64E-53 | -1.69E-46 |
MS.gene051247 | MS.gene26972 | 0.827548 | 1.47E-54 | -1.69E-46 |
MS.gene051279 | MS.gene26972 | 0.816638 | 4.99E-52 | -1.69E-46 |
MS.gene051328 | MS.gene26972 | 0.823968 | 1.04E-53 | -1.69E-46 |
MS.gene05157 | MS.gene26972 | 0.866016 | 3.88E-65 | -1.69E-46 |
MS.gene051700 | MS.gene26972 | 0.812499 | 4.11E-51 | -1.69E-46 |
MS.gene051719 | MS.gene26972 | 0.86417 | 1.47E-64 | -1.69E-46 |
MS.gene051720 | MS.gene26972 | 0.855715 | 5.24E-62 | -1.69E-46 |
MS.gene051744 | MS.gene26972 | 0.837349 | 5.48E-57 | -1.69E-46 |
MS.gene052020 | MS.gene26972 | 0.867679 | 1.15E-65 | -1.69E-46 |
MS.gene052133 | MS.gene26972 | 0.840641 | 7.70E-58 | -1.69E-46 |
MS.gene052307 | MS.gene26972 | 0.816481 | 5.41E-52 | -1.69E-46 |
MS.gene052323 | MS.gene26972 | 0.877153 | 7.90E-69 | -1.69E-46 |
MS.gene052335 | MS.gene26972 | 0.800794 | 1.22E-48 | -1.69E-46 |
MS.gene052397 | MS.gene26972 | 0.840894 | 6.60E-58 | -1.69E-46 |
MS.gene052514 | MS.gene26972 | 0.81073 | 9.97E-51 | -1.69E-46 |
MS.gene052516 | MS.gene26972 | 0.881528 | 2.23E-70 | -1.69E-46 |
MS.gene052582 | MS.gene26972 | 0.801577 | 8.43E-49 | -1.69E-46 |
MS.gene052584 | MS.gene26972 | 0.804934 | 1.70E-49 | -1.69E-46 |
MS.gene052609 | MS.gene26972 | 0.831428 | 1.68E-55 | -1.69E-46 |
MS.gene052611 | MS.gene26972 | 0.840579 | 7.99E-58 | -1.69E-46 |
MS.gene052612 | MS.gene26972 | 0.811913 | 5.52E-51 | -1.69E-46 |
MS.gene052665 | MS.gene26972 | 0.8862 | 4.21E-72 | -1.69E-46 |
MS.gene052732 | MS.gene26972 | 0.832352 | 9.93E-56 | -1.69E-46 |
MS.gene052773 | MS.gene26972 | 0.808373 | 3.20E-50 | -1.69E-46 |
MS.gene052863 | MS.gene26972 | 0.815638 | 8.34E-52 | -1.69E-46 |
MS.gene052879 | MS.gene26972 | 0.807695 | 4.46E-50 | -1.69E-46 |
MS.gene052896 | MS.gene26972 | 0.841742 | 3.95E-58 | -1.69E-46 |
MS.gene053008 | MS.gene26972 | 0.812481 | 4.15E-51 | -1.69E-46 |
MS.gene053079 | MS.gene26972 | 0.866111 | 3.62E-65 | -1.69E-46 |
MS.gene053144 | MS.gene26972 | 0.846758 | 1.78E-59 | -1.69E-46 |
MS.gene053174 | MS.gene26972 | 0.826145 | 3.19E-54 | -1.69E-46 |
MS.gene053221 | MS.gene26972 | 0.815525 | 8.84E-52 | -1.69E-46 |
MS.gene053226 | MS.gene26972 | 0.848044 | 7.88E-60 | -1.69E-46 |
MS.gene053563 | MS.gene26972 | 0.829635 | 4.61E-55 | -1.69E-46 |
MS.gene053565 | MS.gene26972 | 0.843967 | 1.01E-58 | -1.69E-46 |
MS.gene053581 | MS.gene26972 | 0.821752 | 3.42E-53 | -1.69E-46 |
MS.gene053597 | MS.gene26972 | 0.807803 | 4.23E-50 | -1.69E-46 |
MS.gene053599 | MS.gene26972 | 0.835707 | 1.43E-56 | -1.69E-46 |
MS.gene05364 | MS.gene26972 | 0.845602 | 3.67E-59 | -1.69E-46 |
MS.gene054550 | MS.gene26972 | 0.820824 | 5.59E-53 | -1.69E-46 |
MS.gene054584 | MS.gene26972 | 0.848167 | 7.28E-60 | -1.69E-46 |
MS.gene05462 | MS.gene26972 | 0.822911 | 1.84E-53 | -1.69E-46 |
MS.gene054651 | MS.gene26972 | 0.814399 | 1.57E-51 | -1.69E-46 |
MS.gene054824 | MS.gene26972 | 0.806895 | 6.59E-50 | -1.69E-46 |
MS.gene055144 | MS.gene26972 | 0.803337 | 3.66E-49 | -1.69E-46 |
MS.gene055227 | MS.gene26972 | 0.807203 | 5.67E-50 | -1.69E-46 |
MS.gene055313 | MS.gene26972 | 0.807337 | 5.31E-50 | -1.69E-46 |
MS.gene055465 | MS.gene26972 | 0.854495 | 1.19E-61 | -1.69E-46 |
MS.gene055466 | MS.gene26972 | 0.841241 | 5.36E-58 | -1.69E-46 |
MS.gene055468 | MS.gene26972 | 0.832219 | 1.07E-55 | -1.69E-46 |
MS.gene055469 | MS.gene26972 | 0.843355 | 1.47E-58 | -1.69E-46 |
MS.gene055512 | MS.gene26972 | 0.875475 | 2.99E-68 | -1.69E-46 |
MS.gene055513 | MS.gene26972 | 0.813571 | 2.39E-51 | -1.69E-46 |
MS.gene055580 | MS.gene26972 | -0.823411 | 1.41E-53 | -1.69E-46 |
MS.gene055778 | MS.gene26972 | 0.804144 | 2.49E-49 | -1.69E-46 |
MS.gene055818 | MS.gene26972 | 0.800133 | 1.66E-48 | -1.69E-46 |
MS.gene055890 | MS.gene26972 | 0.834601 | 2.73E-56 | -1.69E-46 |
MS.gene055891 | MS.gene26972 | 0.84917 | 3.84E-60 | -1.69E-46 |
MS.gene055926 | MS.gene26972 | 0.81764 | 2.97E-52 | -1.69E-46 |
MS.gene056005 | MS.gene26972 | 0.805239 | 1.47E-49 | -1.69E-46 |
MS.gene056043 | MS.gene26972 | -0.814432 | 1.55E-51 | -1.69E-46 |
MS.gene05604 | MS.gene26972 | 0.830128 | 3.50E-55 | -1.69E-46 |
MS.gene056136 | MS.gene26972 | 0.800919 | 1.15E-48 | -1.69E-46 |
MS.gene056173 | MS.gene26972 | 0.837519 | 4.96E-57 | -1.69E-46 |
MS.gene056181 | MS.gene26972 | 0.805626 | 1.22E-49 | -1.69E-46 |
MS.gene056308 | MS.gene26972 | 0.856997 | 2.20E-62 | -1.69E-46 |
MS.gene056366 | MS.gene26972 | 0.828499 | 8.69E-55 | -1.69E-46 |
MS.gene056432 | MS.gene26972 | 0.805501 | 1.30E-49 | -1.69E-46 |
MS.gene056507 | MS.gene26972 | 0.850601 | 1.53E-60 | -1.69E-46 |
MS.gene056553 | MS.gene26972 | 0.84462 | 6.75E-59 | -1.69E-46 |
MS.gene056589 | MS.gene26972 | 0.832789 | 7.74E-56 | -1.69E-46 |
MS.gene056643 | MS.gene26972 | 0.844037 | 9.69E-59 | -1.69E-46 |
MS.gene056760 | MS.gene26972 | 0.817848 | 2.67E-52 | -1.69E-46 |
MS.gene057057 | MS.gene26972 | 0.808742 | 2.67E-50 | -1.69E-46 |
MS.gene057060 | MS.gene26972 | 0.805561 | 1.26E-49 | -1.69E-46 |
MS.gene057444 | MS.gene26972 | 0.811601 | 6.45E-51 | -1.69E-46 |
MS.gene057446 | MS.gene26972 | 0.841641 | 4.20E-58 | -1.69E-46 |
MS.gene057869 | MS.gene26972 | 0.852968 | 3.26E-61 | -1.69E-46 |
MS.gene057915 | MS.gene26972 | 0.855392 | 6.51E-62 | -1.69E-46 |
MS.gene058010 | MS.gene26972 | 0.819965 | 8.80E-53 | -1.69E-46 |
MS.gene058625 | MS.gene26972 | 0.819182 | 1.33E-52 | -1.69E-46 |
MS.gene058636 | MS.gene26972 | 0.854964 | 8.66E-62 | -1.69E-46 |
MS.gene058638 | MS.gene26972 | 0.808662 | 2.77E-50 | -1.69E-46 |
MS.gene058639 | MS.gene26972 | 0.817146 | 3.84E-52 | -1.69E-46 |
MS.gene058647 | MS.gene26972 | 0.812127 | 4.96E-51 | -1.69E-46 |
MS.gene058668 | MS.gene26972 | 0.807331 | 5.33E-50 | -1.69E-46 |
MS.gene058829 | MS.gene26972 | 0.801394 | 9.19E-49 | -1.69E-46 |
MS.gene058852 | MS.gene26972 | 0.818259 | 2.15E-52 | -1.69E-46 |
MS.gene058919 | MS.gene26972 | 0.812942 | 3.29E-51 | -1.69E-46 |
MS.gene058979 | MS.gene26972 | 0.806139 | 9.51E-50 | -1.69E-46 |
MS.gene058982 | MS.gene26972 | 0.816356 | 5.77E-52 | -1.69E-46 |
MS.gene059171 | MS.gene26972 | 0.829135 | 6.10E-55 | -1.69E-46 |
MS.gene059331 | MS.gene26972 | 0.805677 | 1.19E-49 | -1.69E-46 |
MS.gene059335 | MS.gene26972 | 0.803384 | 3.58E-49 | -1.69E-46 |
MS.gene059570 | MS.gene26972 | 0.806816 | 6.85E-50 | -1.69E-46 |
MS.gene059713 | MS.gene26972 | 0.823997 | 1.02E-53 | -1.69E-46 |
MS.gene059725 | MS.gene26972 | 0.856243 | 3.67E-62 | -1.69E-46 |
MS.gene05978 | MS.gene26972 | 0.874043 | 9.19E-68 | -1.69E-46 |
MS.gene059842 | MS.gene26972 | 0.804323 | 2.28E-49 | -1.69E-46 |
MS.gene059937 | MS.gene26972 | 0.839732 | 1.33E-57 | -1.69E-46 |
MS.gene059965 | MS.gene26972 | 0.826838 | 2.18E-54 | -1.69E-46 |
MS.gene060194 | MS.gene26972 | 0.853216 | 2.77E-61 | -1.69E-46 |
MS.gene060355 | MS.gene26972 | 0.803872 | 2.83E-49 | -1.69E-46 |
MS.gene060470 | MS.gene26972 | 0.811477 | 6.87E-51 | -1.69E-46 |
MS.gene060480 | MS.gene26972 | 0.805933 | 1.05E-49 | -1.69E-46 |
MS.gene060519 | MS.gene26972 | 0.812271 | 4.61E-51 | -1.69E-46 |
MS.gene060587 | MS.gene26972 | 0.886092 | 4.62E-72 | -1.69E-46 |
MS.gene060619 | MS.gene26972 | 0.802908 | 4.49E-49 | -1.69E-46 |
MS.gene060637 | MS.gene26972 | 0.841155 | 5.64E-58 | -1.69E-46 |
MS.gene060803 | MS.gene26972 | 0.811177 | 7.98E-51 | -1.69E-46 |
MS.gene061006 | MS.gene26972 | 0.823243 | 1.54E-53 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26972.t1 | MTR_1g022345 | 99.844 | 643 | 1 | 0 | 1 | 643 | 1 | 643 | 0.0 | 1320 |
MS.gene26972.t1 | MTR_5g082570 | 89.043 | 648 | 66 | 1 | 1 | 643 | 1 | 648 | 0.0 | 1117 |
MS.gene26972.t1 | MTR_3g108380 | 75.000 | 60 | 15 | 0 | 541 | 600 | 32 | 91 | 2.16e-17 | 78.2 |
MS.gene26972.t1 | MTR_3g115580 | 46.154 | 91 | 47 | 2 | 539 | 627 | 25 | 115 | 5.12e-13 | 67.4 |
MS.gene26972.t1 | MTR_7g068280 | 45.455 | 77 | 41 | 1 | 554 | 629 | 47 | 123 | 2.13e-12 | 66.2 |
MS.gene26972.t1 | MTR_8g073345 | 43.023 | 86 | 48 | 1 | 543 | 627 | 22 | 107 | 6.90e-12 | 63.5 |
MS.gene26972.t1 | MTR_8g073345 | 43.023 | 86 | 48 | 1 | 543 | 627 | 22 | 107 | 9.40e-12 | 63.5 |
MS.gene26972.t1 | MTR_5g024180 | 42.708 | 96 | 49 | 2 | 547 | 641 | 25 | 115 | 7.29e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26972.t1 | AT3G28730 | 76.006 | 646 | 150 | 5 | 1 | 642 | 1 | 645 | 0.0 | 934 |
MS.gene26972.t1 | AT3G51880 | 47.059 | 85 | 44 | 1 | 545 | 628 | 40 | 124 | 3.69e-15 | 74.7 |
MS.gene26972.t1 | AT3G51880 | 47.059 | 85 | 44 | 1 | 545 | 628 | 40 | 124 | 3.74e-15 | 73.9 |
MS.gene26972.t1 | AT3G51880 | 47.059 | 85 | 44 | 1 | 545 | 628 | 40 | 124 | 4.73e-15 | 74.3 |
MS.gene26972.t1 | AT3G51880 | 47.059 | 85 | 44 | 1 | 545 | 628 | 40 | 124 | 4.73e-15 | 74.3 |
MS.gene26972.t1 | AT3G51880 | 47.059 | 85 | 44 | 1 | 545 | 628 | 40 | 124 | 4.73e-15 | 74.3 |
MS.gene26972.t1 | AT1G20693 | 48.684 | 76 | 38 | 1 | 553 | 627 | 33 | 108 | 3.97e-13 | 67.8 |
MS.gene26972.t1 | AT1G20693 | 48.684 | 76 | 38 | 1 | 553 | 627 | 33 | 108 | 4.06e-13 | 67.8 |
MS.gene26972.t1 | AT1G20693 | 48.684 | 76 | 38 | 1 | 553 | 627 | 33 | 108 | 4.48e-13 | 67.4 |
MS.gene26972.t1 | AT1G20696 | 47.368 | 76 | 39 | 1 | 553 | 627 | 30 | 105 | 3.08e-11 | 62.0 |
Find 159 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCTTCTTTGGTTCCTTCT+TGG | 0.242213 | 1.3:+2639092 | None:intergenic |
GTCCTGCCCATGCAGTTCTA+AGG | 0.253010 | 1.3:-2639866 | MS.gene26972:intron |
TTACCAAGCCTGGAAAATTT+AGG | 0.253732 | 1.3:-2640338 | MS.gene26972:CDS |
AGAATAAGAGTGGGAGGTTT+AGG | 0.278835 | 1.3:+2640228 | None:intergenic |
AGGAAATATGCTGGCTTTCA+TGG | 0.282409 | 1.3:-2641816 | MS.gene26972:CDS |
AAAGAAGGATTTGCCTTCTA+AGG | 0.286151 | 1.3:-2639079 | MS.gene26972:CDS |
CCGTGATAAAATAATGTCTA+TGG | 0.288359 | 1.3:-2641317 | MS.gene26972:CDS |
TTTCTGTTACTGGGCGCAAT+TGG | 0.293918 | 1.3:-2642478 | MS.gene26972:CDS |
TTAGAAGGCAAATCCTTCTT+TGG | 0.294241 | 1.3:+2639081 | None:intergenic |
CAGTTACTCCGAAGGTGTTT+TGG | 0.314648 | 1.3:+2642516 | None:intergenic |
GAGAAGCAACTTTCTGTTAC+TGG | 0.317850 | 1.3:-2642488 | MS.gene26972:CDS |
TTCTGTTACTGGGCGCAATT+GGG | 0.318614 | 1.3:-2642477 | MS.gene26972:CDS |
ATTCATTTCTCTGAATATTT+CGG | 0.320481 | 1.3:+2639980 | None:intergenic |
CAACCCATGAATATTGATTC+AGG | 0.326088 | 1.3:-2638546 | MS.gene26972:CDS |
ACACCAAGTTGATTTGTCTT+TGG | 0.327527 | 1.3:+2642819 | None:intergenic |
TTCTTTGGTTCCTTCTTGGC+AGG | 0.345422 | 1.3:+2639096 | None:intergenic |
TAATCCTGGAATTTCATTTA+CGG | 0.345587 | 1.3:-2638821 | MS.gene26972:CDS |
TCTTGGGCTTTGGCCTCATA+AGG | 0.353348 | 1.3:+2638618 | None:intergenic |
GAAGAAACAGAAGAAGAAAA+AGG | 0.353379 | 1.3:-2639004 | MS.gene26972:CDS |
TTTCCCTTGAAGGTTTGTTT+GGG | 0.354507 | 1.3:+2641751 | None:intergenic |
ATCTCAGAAAGATTCTTTGA+TGG | 0.362156 | 1.3:-2641496 | MS.gene26972:intron |
AAACCAGACAGTGCCCTCTT+AGG | 0.362568 | 1.3:+2638970 | None:intergenic |
GATCTTCATCACCAACAAAC+TGG | 0.364930 | 1.3:+2641442 | None:intergenic |
AATGAATACCACAATTTGTA+TGG | 0.365076 | 1.3:-2639964 | MS.gene26972:CDS |
ATTTCCTGAATCAATATTCA+TGG | 0.371026 | 1.3:+2638542 | None:intergenic |
GGTTCTCCTACTGATGATTC+TGG | 0.376502 | 1.3:-2639257 | MS.gene26972:CDS |
GATGCTGTTGTTACATTTGA+GGG | 0.383536 | 1.3:-2641271 | MS.gene26972:CDS |
AGTGCCCTCTTAGGTGCATT+TGG | 0.384070 | 1.3:+2638979 | None:intergenic |
TTAGTCTTGATCCTCCTATT+CGG | 0.386509 | 1.3:-2640830 | MS.gene26972:CDS |
TTAGAAGTAGATGCCTTAGA+AGG | 0.388977 | 1.3:+2639066 | None:intergenic |
ATTACCTGCATCACGATATG+AGG | 0.403729 | 1.3:+2640789 | None:intergenic |
GGCGAACCACACTGCTGTAC+TGG | 0.410835 | 1.3:+2641033 | None:intergenic |
GTTGATAAGGCGGACATAAC+GGG | 0.414369 | 1.3:-2642861 | MS.gene26972:CDS |
ATCACCAACAAACTGGGTAT+TGG | 0.417370 | 1.3:+2641449 | None:intergenic |
ACAATATTGCGTGGTTTGTC+CGG | 0.417906 | 1.3:-2640369 | MS.gene26972:CDS |
CAATACATTACCTTGGTGTA+AGG | 0.418775 | 1.3:+2641239 | None:intergenic |
ATTCACTGGTTTCCGTGATC+AGG | 0.421922 | 1.3:-2642769 | MS.gene26972:intron |
AAAGTCTGCCCTTTCCGAAT+AGG | 0.427601 | 1.3:+2640816 | None:intergenic |
ATATTGTGGTAAACACTTCA+TGG | 0.428597 | 1.3:+2640385 | None:intergenic |
GGCCACACCAACAGTTGGTT+GGG | 0.430545 | 1.3:+2639816 | None:intergenic |
CGGTGCCGCCACGGCCGCCG+AGG | 0.437836 | 1.3:+2644077 | None:intergenic |
AGTTCCAATACCCAGTTTGT+TGG | 0.440167 | 1.3:-2641453 | MS.gene26972:CDS |
ACGGACGTGGGAAGAGTACT+TGG | 0.442183 | 1.3:-2638802 | MS.gene26972:CDS |
CTTGGTGTTCAGATCAAAGA+TGG | 0.447302 | 1.3:-2642804 | MS.gene26972:CDS |
TCCTGCCCATGCAGTTCTAA+GGG | 0.450476 | 1.3:-2639865 | MS.gene26972:intron |
TTTGTTCTCGACAAGGATGA+TGG | 0.451598 | 1.3:-2639281 | MS.gene26972:CDS |
GTCTCCCAAACAAACCTTCA+AGG | 0.458044 | 1.3:-2641755 | MS.gene26972:CDS |
ACACCTTCGGAGTAACTGTT+GGG | 0.460966 | 1.3:-2642511 | MS.gene26972:CDS |
AGATGCTGTTGTTACATTTG+AGG | 0.462575 | 1.3:-2641272 | MS.gene26972:CDS |
AATCTAAAGAAAACTAATCC+TGG | 0.464926 | 1.3:-2638835 | MS.gene26972:CDS |
TGAAGATCGCCCTCCTGCTC+AGG | 0.466330 | 1.3:-2641427 | MS.gene26972:intron |
TGGAATTTCATTTACGGACG+TGG | 0.473424 | 1.3:-2638815 | MS.gene26972:CDS |
GGAGGCAAAGTTACCAAGCC+TGG | 0.474637 | 1.3:-2640348 | MS.gene26972:CDS |
TGTTGATAAGGCGGACATAA+CGG | 0.474692 | 1.3:-2642862 | MS.gene26972:CDS |
TTATTGGTGCTGCAGAATCC+GGG | 0.475067 | 1.3:-2642948 | MS.gene26972:intron |
TGGGGAGAAGTTGATCTAAA+CGG | 0.476817 | 1.3:-2642458 | MS.gene26972:intron |
TTATGTGGTTGAAAGTGAAT+TGG | 0.478915 | 1.3:-2640663 | MS.gene26972:CDS |
CAAATCAATTGATGTTGATA+AGG | 0.479324 | 1.3:-2642874 | MS.gene26972:CDS |
AACATTACCCTCGGCGGCCG+TGG | 0.480494 | 1.3:-2644085 | MS.gene26972:CDS |
GAATCAATATTCATGGGTTG+AGG | 0.486272 | 1.3:+2638549 | None:intergenic |
TGGCCACACCAACAGTTGGT+TGG | 0.488815 | 1.3:+2639815 | None:intergenic |
TTTCATTTCAGGAAATATGC+TGG | 0.489570 | 1.3:-2641825 | MS.gene26972:intron |
AGGCTTGGTAACTTTGCCTC+CGG | 0.495486 | 1.3:+2640350 | None:intergenic |
ACAGACAAACTCACCTGAGC+AGG | 0.497300 | 1.3:+2641414 | None:intergenic |
AGTTTCTTCCAAAACACCTT+CGG | 0.497818 | 1.3:-2642524 | MS.gene26972:CDS |
CAGATTTGAGTCTGATAAGA+AGG | 0.497842 | 1.3:+2640019 | None:intergenic |
TTTCACGTGGATGACACAAC+TGG | 0.498298 | 1.3:-2641710 | MS.gene26972:CDS |
CACTCTTATTCTTCATGAAG+AGG | 0.498347 | 1.3:-2640217 | MS.gene26972:intron |
GCACCTAAGAGGGCACTGTC+TGG | 0.501489 | 1.3:-2638973 | MS.gene26972:CDS |
AGAAGCAACTTTCTGTTACT+GGG | 0.502319 | 1.3:-2642487 | MS.gene26972:CDS |
GGGTTGTTCTACAAATTCAC+TGG | 0.502970 | 1.3:-2642783 | MS.gene26972:CDS |
AGGATCCAAATGCACCTAAG+AGG | 0.505192 | 1.3:-2638984 | MS.gene26972:CDS |
CTTCCAGAAACCTGCCAAGA+AGG | 0.506566 | 1.3:-2639106 | MS.gene26972:intron |
TGCCAAGAAGGAACCAAAGA+AGG | 0.508120 | 1.3:-2639094 | MS.gene26972:CDS |
TCTATGGCTGATGTTGGTGC+TGG | 0.508943 | 1.3:-2641301 | MS.gene26972:CDS |
TTTCTGATGCGCTCGAGATG+TGG | 0.509278 | 1.3:+2639757 | None:intergenic |
CCTCTGTCTCACCACCACTT+TGG | 0.510686 | 1.3:+2639213 | None:intergenic |
TCATCTTTGAAAGCTGAAGA+TGG | 0.512966 | 1.3:-2640288 | MS.gene26972:CDS |
GGAGGAGAAGGAACCTTATG+AGG | 0.513515 | 1.3:-2638631 | MS.gene26972:CDS |
AATATGCTGGCTTTCATGGT+TGG | 0.513596 | 1.3:-2641812 | MS.gene26972:CDS |
ACGTCCGTAAATGAAATTCC+AGG | 0.513793 | 1.3:+2638817 | None:intergenic |
CAAGTTGGAGCTGTCTTACA+AGG | 0.514183 | 1.3:-2640603 | MS.gene26972:intron |
GTACCCTCATATCGTGATGC+AGG | 0.515876 | 1.3:-2640793 | MS.gene26972:intron |
ACAAACTGGGTATTGGAACT+TGG | 0.516545 | 1.3:+2641456 | None:intergenic |
TTTCCTGAATCAATATTCAT+GGG | 0.520202 | 1.3:+2638543 | None:intergenic |
GGGTATTGGAACTTGGTACA+TGG | 0.520299 | 1.3:+2641463 | None:intergenic |
GTAGTTTGAAACTGATTATG+TGG | 0.523537 | 1.3:-2640678 | MS.gene26972:intron |
TTCCTACTAGATTGACTATG+TGG | 0.523757 | 1.3:-2640088 | MS.gene26972:intron |
ATTACCCTCGGCGGCCGTGG+CGG | 0.524515 | 1.3:-2644082 | MS.gene26972:CDS |
CTCAAAGTACAAAGACAAGT+TGG | 0.526767 | 1.3:-2640618 | MS.gene26972:CDS |
ACCAACTGTTGGTGTGGCCA+AGG | 0.529642 | 1.3:-2639812 | MS.gene26972:CDS |
CGGACATAACGGGCGTAACA+TGG | 0.530617 | 1.3:-2642851 | MS.gene26972:CDS |
AATGAATCTGACAGTGCCTA+AGG | 0.531097 | 1.3:-2638522 | None:intergenic |
ATGGCTGATGTTGGTGCTGG+AGG | 0.532027 | 1.3:-2641298 | MS.gene26972:CDS |
TGATAAAACCATACAAATTG+TGG | 0.532500 | 1.3:+2639956 | None:intergenic |
TTGATCCTCCTATTCGGAAA+GGG | 0.536206 | 1.3:-2640824 | MS.gene26972:CDS |
CTCTTCAACAACATTACCCT+CGG | 0.540205 | 1.3:-2644094 | MS.gene26972:CDS |
GGTGCCGCCACGGCCGCCGA+GGG | 0.543217 | 1.3:+2644078 | None:intergenic |
GAATTTGAGCGACATGCTGC+TGG | 0.545421 | 1.3:-2640066 | MS.gene26972:CDS |
AACACCTTCGGAGTAACTGT+TGG | 0.545941 | 1.3:-2642512 | MS.gene26972:CDS |
AAATTTAGGAGTTGTCAAGA+TGG | 0.550659 | 1.3:-2640324 | MS.gene26972:CDS |
ATCTTCATCACCAACAAACT+GGG | 0.552179 | 1.3:+2641443 | None:intergenic |
GAAAGAAGAAGCTCTTCTCA+AGG | 0.556630 | 1.3:+2640253 | None:intergenic |
GGATCCAAATGCACCTAAGA+GGG | 0.559964 | 1.3:-2638983 | MS.gene26972:CDS |
AAAGAAGAAGCTCTTCTCAA+GGG | 0.564045 | 1.3:+2640254 | None:intergenic |
GTCTGCCCTTTCCGAATAGG+AGG | 0.565917 | 1.3:+2640819 | None:intergenic |
GACAAACTCACCTGAGCAGG+AGG | 0.567937 | 1.3:+2641417 | None:intergenic |
TGACACAACTGGAGCAAATG+AGG | 0.569007 | 1.3:-2641699 | MS.gene26972:intron |
ACCTTGGCCACACCAACAGT+TGG | 0.570641 | 1.3:+2639811 | None:intergenic |
GAGCGCATCAGAAATGAAGC+TGG | 0.571748 | 1.3:-2639748 | MS.gene26972:CDS |
ATCATCATTCTCAAGCACCT+TGG | 0.580790 | 1.3:+2639795 | None:intergenic |
CTTGATCCTCCTATTCGGAA+AGG | 0.581438 | 1.3:-2640825 | MS.gene26972:CDS |
TCAATACACAGCGGAGGAGA+AGG | 0.582588 | 1.3:-2638643 | MS.gene26972:intron |
AACGGGCGTAACATGGATGA+AGG | 0.587136 | 1.3:-2642844 | MS.gene26972:CDS |
CTCTTCATGAAGAATAAGAG+TGG | 0.590015 | 1.3:+2640218 | None:intergenic |
TCTGTTACTGGGCGCAATTG+GGG | 0.591812 | 1.3:-2642476 | MS.gene26972:CDS |
TCTCCCAAACAAACCTTCAA+GGG | 0.596624 | 1.3:-2641754 | MS.gene26972:CDS |
ATCAATTGATGTTGATAAGG+CGG | 0.597783 | 1.3:-2642871 | MS.gene26972:CDS |
CGCATCAGAAATGAAGCTGG+TGG | 0.603857 | 1.3:-2639745 | MS.gene26972:CDS |
GGACAAACCACGCAATATTG+TGG | 0.607048 | 1.3:+2640371 | None:intergenic |
TTATGGAAGAGACAGGGAGG+TGG | 0.608219 | 1.3:-2642897 | MS.gene26972:CDS |
ATATTGCGTGGTTTGTCCGG+AGG | 0.609437 | 1.3:-2640366 | MS.gene26972:CDS |
AAGAAGAAGCTCTTCTCAAG+GGG | 0.618644 | 1.3:+2640255 | None:intergenic |
GGAATTTCATTTACGGACGT+GGG | 0.619820 | 1.3:-2638814 | MS.gene26972:CDS |
TTTCTCGCCACCATGACGGA+CGG | 0.620285 | 1.3:-2644121 | None:intergenic |
TCAAAAGATGCTGATGACGA+AGG | 0.621100 | 1.3:-2639036 | MS.gene26972:CDS |
GAGAGCTTACGGTGCCGCCA+CGG | 0.622395 | 1.3:+2644068 | None:intergenic |
TTGGTGTTCAGATCAAAGAT+GGG | 0.623826 | 1.3:-2642803 | MS.gene26972:CDS |
CTCCCCAACAGTTACTCCGA+AGG | 0.624094 | 1.3:+2642508 | None:intergenic |
GTTCCAAAGACAAATCAACT+TGG | 0.626047 | 1.3:-2642822 | MS.gene26972:CDS |
TCATGAAGAATAAGAGTGGG+AGG | 0.627094 | 1.3:+2640222 | None:intergenic |
TTTGAGCGACATGCTGCTGG+TGG | 0.628138 | 1.3:-2640063 | MS.gene26972:CDS |
GACTCTGATGCTAGCCAAAG+TGG | 0.628895 | 1.3:-2639227 | MS.gene26972:CDS |
TGCCCAACCAACTGTTGGTG+TGG | 0.630617 | 1.3:-2639818 | MS.gene26972:CDS |
GTTCTCGACAAGGATGATGG+AGG | 0.634483 | 1.3:-2639278 | MS.gene26972:CDS |
GAAGAGATGACCGTCCGTCA+TGG | 0.634783 | 1.3:+2644111 | None:intergenic |
CCAAAGTGGTGGTGAGACAG+AGG | 0.637450 | 1.3:-2639213 | MS.gene26972:intron |
TATTGGTGCTGCAGAATCCG+GGG | 0.638125 | 1.3:-2642947 | MS.gene26972:intron |
CTAATAATGACGAAGGTATG+CGG | 0.638553 | 1.3:+2640849 | None:intergenic |
GACGGAGAACTACCTGATCA+CGG | 0.641013 | 1.3:+2642757 | None:intergenic |
ATCAAGACTAATAATGACGA+AGG | 0.641692 | 1.3:+2640842 | None:intergenic |
TCTTCATGAAGAATAAGAGT+GGG | 0.642579 | 1.3:+2640219 | None:intergenic |
ATAATGTCTATGGCTGATGT+TGG | 0.645958 | 1.3:-2641307 | MS.gene26972:CDS |
GCGCTCGAGATGTGGATCGA+CGG | 0.648144 | 1.3:+2639765 | None:intergenic |
GTGTTTACCACAATATTGCG+TGG | 0.650738 | 1.3:-2640378 | MS.gene26972:CDS |
GCTGATGCCCAACCAACTGT+TGG | 0.651825 | 1.3:-2639823 | MS.gene26972:CDS |
TTACCTGCATCACGATATGA+GGG | 0.656286 | 1.3:+2640790 | None:intergenic |
AAAGATGCTGATGACGAAGG+AGG | 0.658535 | 1.3:-2639033 | MS.gene26972:CDS |
TCTGCACCAGAATCATCAGT+AGG | 0.661015 | 1.3:+2639251 | None:intergenic |
CGTTACAAGGATGAGATGAG+TGG | 0.662650 | 1.3:-2638585 | MS.gene26972:CDS |
CACCTTCGGAGTAACTGTTG+GGG | 0.674663 | 1.3:-2642510 | MS.gene26972:CDS |
ACAAACTCACCTGAGCAGGA+GGG | 0.692093 | 1.3:+2641418 | None:intergenic |
CAAAATCCAGTACAGCAGTG+TGG | 0.693832 | 1.3:-2641039 | MS.gene26972:CDS |
TGGTGGAGATGAAAGTGACG+AGG | 0.704697 | 1.3:-2639728 | MS.gene26972:CDS |
TGTGATGTTGGAGTTTCACG+TGG | 0.716384 | 1.3:-2641723 | MS.gene26972:CDS |
TCTGATGCTAGCCAAAGTGG+TGG | 0.752107 | 1.3:-2639224 | MS.gene26972:CDS |
TGGAGATGAAAGTGACGAGG+AGG | 0.754949 | 1.3:-2639725 | MS.gene26972:intron |
TTCAACAACATTACCCTCGG+CGG | 0.763342 | 1.3:-2644091 | MS.gene26972:CDS |
GTATTGCAATCCTTACACCA+AGG | 0.765044 | 1.3:-2641249 | MS.gene26972:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATTAGAGTTTTTTTTTTA+TGG | - | chr1.3:2642513-2642532 | MS.gene26972:CDS | 10.0% |
!! | AAAATAATAATGAAAAGATG+AGG | - | chr1.3:2639589-2639608 | MS.gene26972:intron | 15.0% |
!! | AGTAGATTTATTGAAAAAAA+TGG | - | chr1.3:2638845-2638864 | MS.gene26972:intron | 15.0% |
!! | GTAGATTTATTGAAAAAAAT+GGG | - | chr1.3:2638846-2638865 | MS.gene26972:intron | 15.0% |
!! | TACACTTATATTTGTATTAT+TGG | - | chr1.3:2639669-2639688 | MS.gene26972:intron | 15.0% |
!! | TATATTAAAAACAAAAAGCA+AGG | + | chr1.3:2641657-2641676 | None:intergenic | 15.0% |
!!! | AAATATCTTTGAAAATAGTA+GGG | + | chr1.3:2640373-2640392 | None:intergenic | 15.0% |
!!! | TAAATATCTTTGAAAATAGT+AGG | + | chr1.3:2640374-2640393 | None:intergenic | 15.0% |
!!! | TGCTTTTGTATATATTAAAT+TGG | - | chr1.3:2643304-2643323 | MS.gene26972:intron | 15.0% |
!! | AAACATGTAAATACATATTC+AGG | + | chr1.3:2639904-2639923 | None:intergenic | 20.0% |
!! | AAATAGAACCAACTTAAAAA+TGG | + | chr1.3:2640502-2640521 | None:intergenic | 20.0% |
!! | AAATTAGGGATTAACAAAAA+TGG | + | chr1.3:2638745-2638764 | None:intergenic | 20.0% |
!! | AACATGTAAATACATATTCA+GGG | + | chr1.3:2639903-2639922 | None:intergenic | 20.0% |
!! | AATAGAACCAACTTAAAAAT+GGG | + | chr1.3:2640501-2640520 | None:intergenic | 20.0% |
!! | AATATAATAGGCTAAGATTA+TGG | + | chr1.3:2643932-2643951 | None:intergenic | 20.0% |
!! | AATTCACTATTCAATAATCA+GGG | - | chr1.3:2642219-2642238 | MS.gene26972:intron | 20.0% |
!! | ATCAAACACATAAATTTACT+CGG | + | chr1.3:2640274-2640293 | None:intergenic | 20.0% |
!! | ATTCATTTCTCTGAATATTT+CGG | + | chr1.3:2642656-2642675 | None:intergenic | 20.0% |
!! | CACAAACACAAAAATATAAT+AGG | + | chr1.3:2643944-2643963 | None:intergenic | 20.0% |
!! | GAAATGAAAATAGAAACATA+AGG | + | chr1.3:2640797-2640816 | None:intergenic | 20.0% |
!! | TAAAAATGGGTACAAAAAAA+CGG | + | chr1.3:2640488-2640507 | None:intergenic | 20.0% |
!! | TAATTCACTATTCAATAATC+AGG | - | chr1.3:2642218-2642237 | MS.gene26972:intron | 20.0% |
!! | TTAAATATCCATCTAGTATT+AGG | - | chr1.3:2638979-2638998 | MS.gene26972:CDS | 20.0% |
!!! | AAGTTGGTTCTATTTTTTTT+GGG | - | chr1.3:2640507-2640526 | MS.gene26972:intron | 20.0% |
!!! | AATCACAATTTACACATTTT+TGG | + | chr1.3:2638904-2638923 | None:intergenic | 20.0% |
!!! | ATAAGTTTTGTAAGACTATT+TGG | + | chr1.3:2639466-2639485 | None:intergenic | 20.0% |
!!! | CAAATATGTGTGATAAATTT+TGG | + | chr1.3:2642722-2642741 | None:intergenic | 20.0% |
!!! | TAAGTTGGTTCTATTTTTTT+TGG | - | chr1.3:2640506-2640525 | MS.gene26972:intron | 20.0% |
!!! | TATGTTTCTATTTTCATTTC+AGG | - | chr1.3:2640797-2640816 | MS.gene26972:CDS | 20.0% |
!!! | TGACATTTGTAAAATCATTT+TGG | - | chr1.3:2641282-2641301 | MS.gene26972:CDS | 20.0% |
!!! | TGTAAAATCATTTTGGTATT+AGG | - | chr1.3:2641289-2641308 | MS.gene26972:CDS | 20.0% |
! | AAAAACAAAAAGCAAGGATT+AGG | + | chr1.3:2641651-2641670 | None:intergenic | 25.0% |
! | AAAAAGGAGTTACAAAAGTT+AGG | + | chr1.3:2638673-2638692 | None:intergenic | 25.0% |
! | AAAAGGAGTTACAAAAGTTA+GGG | + | chr1.3:2638672-2638691 | None:intergenic | 25.0% |
! | AAACCTTAGGAAGTAAAAAT+AGG | + | chr1.3:2641624-2641643 | None:intergenic | 25.0% |
! | AAAGAATCAATTTACATGTG+TGG | + | chr1.3:2641693-2641712 | None:intergenic | 25.0% |
! | AAATCATAAACCCTAATACT+AGG | - | chr1.3:2638695-2638714 | MS.gene26972:intron | 25.0% |
! | AATCATAAACCCTAATACTA+GGG | - | chr1.3:2638696-2638715 | MS.gene26972:intron | 25.0% |
! | AATCTAAAGAAAACTAATCC+TGG | - | chr1.3:2643798-2643817 | MS.gene26972:intron | 25.0% |
! | AATGAATACCACAATTTGTA+TGG | - | chr1.3:2642669-2642688 | MS.gene26972:intron | 25.0% |
! | ACATGTAAATACATATTCAG+GGG | + | chr1.3:2639902-2639921 | None:intergenic | 25.0% |
! | AGAAAAATGGAAAAATCTGT+CGG | - | chr1.3:2643854-2643873 | MS.gene26972:intron | 25.0% |
! | ATCTTGTTACAGCAAATTAT+AGG | - | chr1.3:2641255-2641274 | MS.gene26972:CDS | 25.0% |
! | ATGTTTGACATCGTTTATAA+TGG | - | chr1.3:2640301-2640320 | MS.gene26972:CDS | 25.0% |
! | ATTCACTATTCAATAATCAG+GGG | - | chr1.3:2642220-2642239 | MS.gene26972:intron | 25.0% |
! | ATTTCCTGAATCAATATTCA+TGG | + | chr1.3:2644094-2644113 | None:intergenic | 25.0% |
! | CAAATCAATTGATGTTGATA+AGG | - | chr1.3:2639759-2639778 | MS.gene26972:CDS | 25.0% |
! | CAGATAAAAATATATTCTGG+AGG | - | chr1.3:2639709-2639728 | MS.gene26972:intron | 25.0% |
! | GAAAAAGGAATTCAATTGTT+TGG | - | chr1.3:2639932-2639951 | MS.gene26972:intron | 25.0% |
! | GAGTAAATTTATGTGTTTGA+TGG | - | chr1.3:2640273-2640292 | MS.gene26972:CDS | 25.0% |
! | TAATCCTGGAATTTCATTTA+CGG | - | chr1.3:2643812-2643831 | MS.gene26972:intron | 25.0% |
! | TAGATATATTCAAATGAGGT+TGG | + | chr1.3:2643051-2643070 | None:intergenic | 25.0% |
! | TCTAATGAATTGATACAGTT+TGG | - | chr1.3:2640986-2641005 | MS.gene26972:intron | 25.0% |
! | TGAAAACAACTTATGAACAA+TGG | - | chr1.3:2639171-2639190 | MS.gene26972:intron | 25.0% |
! | TGATAAAACCATACAAATTG+TGG | + | chr1.3:2642680-2642699 | None:intergenic | 25.0% |
! | TGCTTAGATATATTCAAATG+AGG | + | chr1.3:2643055-2643074 | None:intergenic | 25.0% |
! | TGTTCTAATTTAAGTGATTG+AGG | - | chr1.3:2643006-2643025 | MS.gene26972:intron | 25.0% |
! | TTCCTTATAAAAAGAAACAC+CGG | - | chr1.3:2640451-2640470 | MS.gene26972:intron | 25.0% |
! | TTTCCTGAATCAATATTCAT+GGG | + | chr1.3:2644093-2644112 | None:intergenic | 25.0% |
!! | AAATACCAAATGTTAGTTTC+TGG | - | chr1.3:2642468-2642487 | MS.gene26972:CDS | 25.0% |
!! | AATTACCCTGAATTTTACAA+AGG | + | chr1.3:2640432-2640451 | None:intergenic | 25.0% |
!! | AGATCAATCTTTTTCTTGAA+AGG | + | chr1.3:2641487-2641506 | None:intergenic | 25.0% |
!! | GAAACTAACATTTGGTATTT+TGG | + | chr1.3:2642468-2642487 | None:intergenic | 25.0% |
!!! | AATTACACTTGTCATTTTTG+CGG | - | chr1.3:2641548-2641567 | MS.gene26972:intron | 25.0% |
!!! | ACAATTTGTATGGTTTTATC+AGG | - | chr1.3:2642679-2642698 | MS.gene26972:intron | 25.0% |
!!! | ACGTTTTATACTTATTTTGC+AGG | - | chr1.3:2640069-2640088 | MS.gene26972:CDS | 25.0% |
!!! | AGGGTTTATGATTTTGAAAA+AGG | + | chr1.3:2638689-2638708 | None:intergenic | 25.0% |
!!! | CATGTTTTTGATGTTGAAAA+AGG | - | chr1.3:2639917-2639936 | MS.gene26972:intron | 25.0% |
!!! | CCATAGACATTATTTTATCA+CGG | + | chr1.3:2641319-2641338 | None:intergenic | 25.0% |
!!! | TATATTCTGGAGGAATTTTA+TGG | - | chr1.3:2639719-2639738 | MS.gene26972:intron | 25.0% |
!!! | TGACTAAACTGTTGATAATT+GGG | - | chr1.3:2642056-2642075 | MS.gene26972:intron | 25.0% |
!!! | TGTAAATTGATTCTTTTCTC+TGG | - | chr1.3:2641697-2641716 | MS.gene26972:intron | 25.0% |
!!! | TTGACTAAACTGTTGATAAT+TGG | - | chr1.3:2642055-2642074 | MS.gene26972:intron | 25.0% |
!!! | TTTTGGAATTGCGTTTTTTA+TGG | - | chr1.3:2641093-2641112 | MS.gene26972:CDS | 25.0% |
!!! | TTTTGTACCCATTTTTAAGT+TGG | - | chr1.3:2640491-2640510 | MS.gene26972:intron | 25.0% |
AAAGTGAGAAGTTGTTAAGA+TGG | - | chr1.3:2640599-2640618 | MS.gene26972:intron | 30.0% | |
AAATTTACTCGGAGTATAGT+AGG | + | chr1.3:2640263-2640282 | None:intergenic | 30.0% | |
AAATTTAGGAGTTGTCAAGA+TGG | - | chr1.3:2642309-2642328 | MS.gene26972:intron | 30.0% | |
AAGTTGTTAAGATGGAAATG+TGG | - | chr1.3:2640607-2640626 | MS.gene26972:CDS | 30.0% | |
AATTGGTGTAAAATGTCTAC+AGG | - | chr1.3:2643321-2643340 | MS.gene26972:intron | 30.0% | |
ACAAATTGCACACAATAACT+AGG | + | chr1.3:2638959-2638978 | None:intergenic | 30.0% | |
ACCAAAGATTTAAAGAGTAG+AGG | + | chr1.3:2643481-2643500 | None:intergenic | 30.0% | |
ACCTCTACTCTTTAAATCTT+TGG | - | chr1.3:2643477-2643496 | MS.gene26972:intron | 30.0% | |
AGGAATTCAATTGTTTGGTT+TGG | - | chr1.3:2639937-2639956 | MS.gene26972:intron | 30.0% | |
AGTTAGGGTTATTCAAAAAG+AGG | + | chr1.3:2638657-2638676 | None:intergenic | 30.0% | |
AGTTGTTAAGATGGAAATGT+GGG | - | chr1.3:2640608-2640627 | MS.gene26972:CDS | 30.0% | |
ATAAGCTGATTATCCAAACA+GGG | + | chr1.3:2639005-2639024 | None:intergenic | 30.0% | |
ATAGAGAAAACCCTAGTATT+AGG | + | chr1.3:2638709-2638728 | None:intergenic | 30.0% | |
ATAGTCAATCTAGTAGGAAA+TGG | + | chr1.3:2642544-2642563 | None:intergenic | 30.0% | |
ATATTGTGGTAAACACTTCA+TGG | + | chr1.3:2642251-2642270 | None:intergenic | 30.0% | |
ATCAAAAAGATCCACCATAA+AGG | + | chr1.3:2640728-2640747 | None:intergenic | 30.0% | |
ATCAACCAGAAACTAACATT+TGG | + | chr1.3:2642476-2642495 | None:intergenic | 30.0% | |
ATCAAGACTAATAATGACGA+AGG | + | chr1.3:2641794-2641813 | None:intergenic | 30.0% | |
ATCTCAGAAAGATTCTTTGA+TGG | - | chr1.3:2641137-2641156 | MS.gene26972:intron | 30.0% | |
ATGCAAAGAAACAGAAAACT+TGG | + | chr1.3:2643968-2643987 | None:intergenic | 30.0% | |
ATGGAACTGCAATGAAATAA+TGG | + | chr1.3:2643893-2643912 | None:intergenic | 30.0% | |
CAAATCATCAACGTTTAGAT+TGG | + | chr1.3:2640007-2640026 | None:intergenic | 30.0% | |
CACTCAAAATACAAACTGAA+TGG | + | chr1.3:2640404-2640423 | None:intergenic | 30.0% | |
CATGTAAATACATATTCAGG+GGG | + | chr1.3:2639901-2639920 | None:intergenic | 30.0% | |
CCGTGATAAAATAATGTCTA+TGG | - | chr1.3:2641316-2641335 | MS.gene26972:CDS | 30.0% | |
GAAAAATGGAAAAATCTGTC+GGG | - | chr1.3:2643855-2643874 | MS.gene26972:intron | 30.0% | |
GAAGAAACAGAAGAAGAAAA+AGG | - | chr1.3:2643629-2643648 | MS.gene26972:intron | 30.0% | |
GCTGTTTATGTATGCTATAT+TGG | - | chr1.3:2639129-2639148 | MS.gene26972:intron | 30.0% | |
GGGCAGATAAAAATATATTC+TGG | - | chr1.3:2639706-2639725 | MS.gene26972:intron | 30.0% | |
GGTTATTCAAAAAGAGGAAA+TGG | + | chr1.3:2638651-2638670 | None:intergenic | 30.0% | |
GTACATACATATTAGTGATG+TGG | - | chr1.3:2643728-2643747 | MS.gene26972:intron | 30.0% | |
TAAGCGCATATCATGATAAA+TGG | + | chr1.3:2639046-2639065 | None:intergenic | 30.0% | |
TAAGTATAAAACGTCAACAC+AGG | + | chr1.3:2640063-2640082 | None:intergenic | 30.0% | |
TAGAGAAAACCCTAGTATTA+GGG | + | chr1.3:2638708-2638727 | None:intergenic | 30.0% | |
TCAAAAAGATCCACCATAAA+GGG | + | chr1.3:2640727-2640746 | None:intergenic | 30.0% | |
TCCTTATAAAAAGAAACACC+GGG | - | chr1.3:2640452-2640471 | MS.gene26972:intron | 30.0% | |
TCTTCATGAAGAATAAGAGT+GGG | + | chr1.3:2642417-2642436 | None:intergenic | 30.0% | |
TGTTGTACAATACATTACCT+TGG | + | chr1.3:2641404-2641423 | None:intergenic | 30.0% | |
TTATGTGGTTGAAAGTGAAT+TGG | - | chr1.3:2641970-2641989 | MS.gene26972:intron | 30.0% | |
TTTCATTTCAGGAAATATGC+TGG | - | chr1.3:2640808-2640827 | MS.gene26972:CDS | 30.0% | |
! | AAAACAATTCAGCGTTTTGT+GGG | + | chr1.3:2639208-2639227 | None:intergenic | 30.0% |
! | AAATTTGCTTTATTGTGCAG+AGG | - | chr1.3:2641511-2641530 | MS.gene26972:intron | 30.0% |
! | AGTGTTTTCATTAGCTATCT+TGG | - | chr1.3:2639374-2639393 | MS.gene26972:intron | 30.0% |
! | ATCAACTAACGTAAGTTTTG+TGG | + | chr1.3:2639322-2639341 | None:intergenic | 30.0% |
! | ATCAATTGATGTTGATAAGG+CGG | - | chr1.3:2639762-2639781 | MS.gene26972:CDS | 30.0% |
! | CTTTATTCATGAGTAGCTTT+TGG | - | chr1.3:2642975-2642994 | MS.gene26972:intron | 30.0% |
! | GTAGTTTGAAACTGATTATG+TGG | - | chr1.3:2641955-2641974 | MS.gene26972:intron | 30.0% |
! | GTCTACTTACATTTCAGTTT+TGG | - | chr1.3:2643106-2643125 | MS.gene26972:intron | 30.0% |
! | TTGGTCAAAGTGTTAATCAA+AGG | + | chr1.3:2639988-2640007 | None:intergenic | 30.0% |
! | TTTCATGTTCTTTTCTCAGA+TGG | - | chr1.3:2643683-2643702 | MS.gene26972:intron | 30.0% |
!! | AAACGTTGATGATTTGGATT+TGG | - | chr1.3:2640011-2640030 | MS.gene26972:CDS | 30.0% |
!! | AGAAGATAAAAAGCGTTACA+AGG | - | chr1.3:2644035-2644054 | MS.gene26972:intron | 30.0% |
!! | CAATCTAAACGTTGATGATT+TGG | - | chr1.3:2640005-2640024 | MS.gene26972:CDS | 30.0% |
!! | GAATATATTTTTATCTGCCC+CGG | + | chr1.3:2639706-2639725 | None:intergenic | 30.0% |
!! | GTAACGCTTTTTATCTTCTT+GGG | + | chr1.3:2644034-2644053 | None:intergenic | 30.0% |
!! | GTTAGTTGATAAGCTCAAAT+AGG | - | chr1.3:2639332-2639351 | MS.gene26972:intron | 30.0% |
!! | TCAACTAACGTAAGTTTTGT+GGG | + | chr1.3:2639321-2639340 | None:intergenic | 30.0% |
!! | TGTAACGCTTTTTATCTTCT+TGG | + | chr1.3:2644035-2644054 | None:intergenic | 30.0% |
!!! | AAATGTGGGTTCTTTTTTTC+AGG | - | chr1.3:2640622-2640641 | MS.gene26972:CDS | 30.0% |
!!! | AAGGGCATATTTTAGTTGAT+TGG | - | chr1.3:2642133-2642152 | MS.gene26972:intron | 30.0% |
!!! | AATGTGGGTTCTTTTTTTCA+GGG | - | chr1.3:2640623-2640642 | MS.gene26972:CDS | 30.0% |
!!! | GCATATTTTAGTTGATTGGT+TGG | - | chr1.3:2642137-2642156 | MS.gene26972:intron | 30.0% |
!!! | TTTATGGTGGATCTTTTTGA+TGG | - | chr1.3:2640727-2640746 | MS.gene26972:intron | 30.0% |
AAAGAAGAAGCTCTTCTCAA+GGG | + | chr1.3:2642382-2642401 | None:intergenic | 35.0% | |
AAAGAAGGATTTGCCTTCTA+AGG | - | chr1.3:2643554-2643573 | MS.gene26972:intron | 35.0% | |
AAATGCAGTCTTTCCCTTTA+TGG | - | chr1.3:2640711-2640730 | MS.gene26972:intron | 35.0% | |
AGAAGCAACTTTCTGTTACT+GGG | - | chr1.3:2640146-2640165 | MS.gene26972:intron | 35.0% | |
AGATGCTGTTGTTACATTTG+AGG | - | chr1.3:2641361-2641380 | MS.gene26972:intron | 35.0% | |
AGATTTAAAGAGTAGAGGTG+AGG | + | chr1.3:2643476-2643495 | None:intergenic | 35.0% | |
AGGATTAGGAGATAAACCTT+AGG | + | chr1.3:2641637-2641656 | None:intergenic | 35.0% | |
AGGGAAAAATGATGTGATGT+TGG | - | chr1.3:2640898-2640917 | MS.gene26972:intron | 35.0% | |
AGTTTCTTCCAAAACACCTT+CGG | - | chr1.3:2640109-2640128 | MS.gene26972:intron | 35.0% | |
ATAATGTCTATGGCTGATGT+TGG | - | chr1.3:2641326-2641345 | MS.gene26972:intron | 35.0% | |
ATACTATTCAAGCCCAAGTT+TGG | + | chr1.3:2641049-2641068 | None:intergenic | 35.0% | |
ATCTTCATCACCAACAAACT+GGG | + | chr1.3:2641193-2641212 | None:intergenic | 35.0% | |
CAAGTAGTCAAGTACAGATT+AGG | + | chr1.3:2642936-2642955 | None:intergenic | 35.0% | |
CACTCTTATTCTTCATGAAG+AGG | - | chr1.3:2642416-2642435 | MS.gene26972:intron | 35.0% | |
CAGATTTGAGTCTGATAAGA+AGG | + | chr1.3:2642617-2642636 | None:intergenic | 35.0% | |
CAGTTTCAAACTACACAGAA+AGG | + | chr1.3:2641949-2641968 | None:intergenic | 35.0% | |
CTCAAAGTACAAAGACAAGT+TGG | - | chr1.3:2642015-2642034 | MS.gene26972:intron | 35.0% | |
CTCTTCATGAAGAATAAGAG+TGG | + | chr1.3:2642418-2642437 | None:intergenic | 35.0% | |
GATAAGCTGATTATCCAAAC+AGG | + | chr1.3:2639006-2639025 | None:intergenic | 35.0% | |
GATGCTGTTGTTACATTTGA+GGG | - | chr1.3:2641362-2641381 | MS.gene26972:intron | 35.0% | |
GCTACTCATGAATAAAGAAG+AGG | + | chr1.3:2642972-2642991 | None:intergenic | 35.0% | |
GTTCCAAAGACAAATCAACT+TGG | - | chr1.3:2639811-2639830 | MS.gene26972:CDS | 35.0% | |
TAAATACATATTCAGGGGGA+CGG | + | chr1.3:2639897-2639916 | None:intergenic | 35.0% | |
TATTGTAGGCTGCAGTTAAT+AGG | - | chr1.3:2641066-2641085 | MS.gene26972:CDS | 35.0% | |
TCAAAAAGAGGAAATGGTGA+AGG | + | chr1.3:2638645-2638664 | None:intergenic | 35.0% | |
TCATTAGCTGTTATGTGTCA+AGG | - | chr1.3:2639534-2639553 | MS.gene26972:intron | 35.0% | |
TGAGGAAAGAAGATCGAAAA+TGG | + | chr1.3:2638620-2638639 | None:intergenic | 35.0% | |
TGATGTAACAACCAGATTGA+AGG | + | chr1.3:2640568-2640587 | None:intergenic | 35.0% | |
TTACCAAGCCTGGAAAATTT+AGG | - | chr1.3:2642295-2642314 | MS.gene26972:intron | 35.0% | |
TTAGAAGGCAAATCCTTCTT+TGG | + | chr1.3:2643555-2643574 | None:intergenic | 35.0% | |
TTAGAAGTAGATGCCTTAGA+AGG | + | chr1.3:2643570-2643589 | None:intergenic | 35.0% | |
TTCCACATAGTCAATCTAGT+AGG | + | chr1.3:2642550-2642569 | None:intergenic | 35.0% | |
TTCCTACTAGATTGACTATG+TGG | - | chr1.3:2642545-2642564 | MS.gene26972:CDS | 35.0% | |
TTGGGCTTGAATAGTATTGT+AGG | - | chr1.3:2641052-2641071 | MS.gene26972:CDS | 35.0% | |
TTTGCATGTTCAATACACAG+CGG | - | chr1.3:2643981-2644000 | MS.gene26972:intron | 35.0% | |
! | ACAATAACTAGGTTTGAAGC+TGG | + | chr1.3:2638948-2638967 | None:intergenic | 35.0% |
! | AGGAATTTTATGGAAGAGAC+AGG | - | chr1.3:2639729-2639748 | MS.gene26972:CDS | 35.0% |
! | CAATACATTACCTTGGTGTA+AGG | + | chr1.3:2641397-2641416 | None:intergenic | 35.0% |
! | CAGGTAATGTTTTACTTCGT+TGG | - | chr1.3:2641859-2641878 | MS.gene26972:intron | 35.0% |
! | CTAATAATGACGAAGGTATG+CGG | + | chr1.3:2641787-2641806 | None:intergenic | 35.0% |
! | CTTTTTATCTTCTTGGGCTT+TGG | + | chr1.3:2644028-2644047 | None:intergenic | 35.0% |
! | GAAAACAATTCAGCGTTTTG+TGG | + | chr1.3:2639209-2639228 | None:intergenic | 35.0% |
! | GAATCAATATTCATGGGTTG+AGG | + | chr1.3:2644087-2644106 | None:intergenic | 35.0% |
! | GGAATTTTATGGAAGAGACA+GGG | - | chr1.3:2639730-2639749 | MS.gene26972:CDS | 35.0% |
! | TACCCTGAATTTTACAAAGG+CGG | + | chr1.3:2640429-2640448 | None:intergenic | 35.0% |
! | TCATCTTTGAAAGCTGAAGA+TGG | - | chr1.3:2642345-2642364 | MS.gene26972:intron | 35.0% |
! | TGACAACTCCTAAATTTTCC+AGG | + | chr1.3:2642306-2642325 | None:intergenic | 35.0% |
! | TGCAGTTAATAGGCTCATTT+TGG | - | chr1.3:2641076-2641095 | MS.gene26972:CDS | 35.0% |
! | TGGTCATCATTAAGGTGTTA+CGG | + | chr1.3:2643506-2643525 | None:intergenic | 35.0% |
! | TTCAGATTTTGTTCTCGACA+AGG | - | chr1.3:2643345-2643364 | MS.gene26972:intron | 35.0% |
! | TTGGTGTTCAGATCAAAGAT+GGG | - | chr1.3:2639830-2639849 | MS.gene26972:CDS | 35.0% |
! | TTTCCCTTGAAGGTTTGTTT+GGG | + | chr1.3:2640885-2640904 | None:intergenic | 35.0% |
!! | ACACCAAGTTGATTTGTCTT+TGG | + | chr1.3:2639817-2639836 | None:intergenic | 35.0% |
!! | AGCTGCTTTGGAAATGAAAA+AGG | - | chr1.3:2642114-2642133 | MS.gene26972:intron | 35.0% |
!! | CAACCCATGAATATTGATTC+AGG | - | chr1.3:2644087-2644106 | MS.gene26972:CDS | 35.0% |
!! | CTGACTTGACTGCTTTTATA+CGG | - | chr1.3:2640752-2640771 | MS.gene26972:intron | 35.0% |
!! | GAAGAGTACTTGGAGAAAAA+TGG | - | chr1.3:2643841-2643860 | MS.gene26972:intron | 35.0% |
!! | GCTGCTTTGGAAATGAAAAA+GGG | - | chr1.3:2642115-2642134 | MS.gene26972:intron | 35.0% |
!! | TCACATCATTTTTCCCTTGA+AGG | + | chr1.3:2640895-2640914 | None:intergenic | 35.0% |
!! | TTAGTCTTGATCCTCCTATT+CGG | - | chr1.3:2641803-2641822 | MS.gene26972:CDS | 35.0% |
!! | TTCAATTGTTTGGTTTGGCT+TGG | - | chr1.3:2639942-2639961 | MS.gene26972:intron | 35.0% |
!! | TTTTCCCTTGAAGGTTTGTT+TGG | + | chr1.3:2640886-2640905 | None:intergenic | 35.0% |
!!! | TCGCCTATTTTTACTTCCTA+AGG | - | chr1.3:2641618-2641637 | MS.gene26972:intron | 35.0% |
AAACAGGGCCTAATACTAGA+TGG | + | chr1.3:2638990-2639009 | None:intergenic | 40.0% | |
AAACCTTCCTCATCCAAACT+TGG | - | chr1.3:2641033-2641052 | MS.gene26972:CDS | 40.0% | |
AAAGGGATAGATGGACAAAC+AGG | + | chr1.3:2643177-2643196 | None:intergenic | 40.0% | |
AACAACCAGATTGAAGGTAG+TGG | + | chr1.3:2640562-2640581 | None:intergenic | 40.0% | |
AACCTTCCTCATCCAAACTT+GGG | - | chr1.3:2641034-2641053 | MS.gene26972:CDS | 40.0% | |
AAGAAGAAGCTCTTCTCAAG+GGG | + | chr1.3:2642381-2642400 | None:intergenic | 40.0% | |
ACGTCCGTAAATGAAATTCC+AGG | + | chr1.3:2643819-2643838 | None:intergenic | 40.0% | |
AGAAACATAAGGACATCCAC+TGG | + | chr1.3:2640786-2640805 | None:intergenic | 40.0% | |
AGAATAAGAGTGGGAGGTTT+AGG | + | chr1.3:2642408-2642427 | None:intergenic | 40.0% | |
AGTTCCAATACCCAGTTTGT+TGG | - | chr1.3:2641180-2641199 | MS.gene26972:intron | 40.0% | |
ATCACCAACAAACTGGGTAT+TGG | + | chr1.3:2641187-2641206 | None:intergenic | 40.0% | |
ATCATCATTCTCAAGCACCT+TGG | + | chr1.3:2642841-2642860 | None:intergenic | 40.0% | |
ATCTAGTATTAGGCCCTGTT+TGG | - | chr1.3:2638989-2639008 | MS.gene26972:CDS | 40.0% | |
ATGGAAAAATCTGTCGGGTA+TGG | - | chr1.3:2643860-2643879 | MS.gene26972:intron | 40.0% | |
ATTACCTGCATCACGATATG+AGG | + | chr1.3:2641847-2641866 | None:intergenic | 40.0% | |
CACCGCCTTTGTAAAATTCA+GGG | - | chr1.3:2640424-2640443 | MS.gene26972:intron | 40.0% | |
CTCATTCATGCTTTCTTCTC+TGG | - | chr1.3:2640682-2640701 | MS.gene26972:intron | 40.0% | |
CTCTGTATTGCTTACTGTTG+TGG | - | chr1.3:2643211-2643230 | MS.gene26972:intron | 40.0% | |
CTCTTCAACAACATTACCCT+CGG | - | chr1.3:2638539-2638558 | MS.gene26972:CDS | 40.0% | |
GAAAGAAGAAGCTCTTCTCA+AGG | + | chr1.3:2642383-2642402 | None:intergenic | 40.0% | |
GACAAACTGAAAGGGATAGA+TGG | + | chr1.3:2643186-2643205 | None:intergenic | 40.0% | |
GAGAAGCAACTTTCTGTTAC+TGG | - | chr1.3:2640145-2640164 | MS.gene26972:intron | 40.0% | |
GATCTTCATCACCAACAAAC+TGG | + | chr1.3:2641194-2641213 | None:intergenic | 40.0% | |
GGAATTTCATTTACGGACGT+GGG | - | chr1.3:2643819-2643838 | MS.gene26972:intron | 40.0% | |
GGGTTGTTCTACAAATTCAC+TGG | - | chr1.3:2639850-2639869 | MS.gene26972:CDS | 40.0% | |
GTATTGCAATCCTTACACCA+AGG | - | chr1.3:2641384-2641403 | MS.gene26972:intron | 40.0% | |
GTCATATGCGTATGTCTTGT+GGG | - | chr1.3:2643244-2643263 | MS.gene26972:intron | 40.0% | |
GTGTTTACCACAATATTGCG+TGG | - | chr1.3:2642255-2642274 | MS.gene26972:intron | 40.0% | |
TCATGAAGAATAAGAGTGGG+AGG | + | chr1.3:2642414-2642433 | None:intergenic | 40.0% | |
TCTCCCAAACAAACCTTCAA+GGG | - | chr1.3:2640879-2640898 | MS.gene26972:intron | 40.0% | |
TGACAGCTTATCATGTCTGT+TGG | - | chr1.3:2641736-2641755 | MS.gene26972:CDS | 40.0% | |
TGGAATTTCATTTACGGACG+TGG | - | chr1.3:2643818-2643837 | MS.gene26972:intron | 40.0% | |
TGGTCACAAATGACACTAGA+TGG | + | chr1.3:2643912-2643931 | None:intergenic | 40.0% | |
TGGTTATCAGCAAAAGCAAC+TGG | + | chr1.3:2642448-2642467 | None:intergenic | 40.0% | |
TGTCATATGCGTATGTCTTG+TGG | - | chr1.3:2643243-2643262 | MS.gene26972:intron | 40.0% | |
TTACCTGCATCACGATATGA+GGG | + | chr1.3:2641846-2641865 | None:intergenic | 40.0% | |
TTATACGGCTATACTACCAG+TGG | - | chr1.3:2640767-2640786 | MS.gene26972:intron | 40.0% | |
TTGATCCTCCTATTCGGAAA+GGG | - | chr1.3:2641809-2641828 | MS.gene26972:CDS | 40.0% | |
TTTGTTCTCGACAAGGATGA+TGG | - | chr1.3:2643352-2643371 | MS.gene26972:intron | 40.0% | |
! | ACAATATTGCGTGGTTTGTC+CGG | - | chr1.3:2642264-2642283 | MS.gene26972:intron | 40.0% |
! | ACTCCTAAATTTTCCAGGCT+TGG | + | chr1.3:2642301-2642320 | None:intergenic | 40.0% |
! | AGAGAGCATGACAAACTGAA+AGG | + | chr1.3:2643195-2643214 | None:intergenic | 40.0% |
! | ATCCTTCTTTGGTTCCTTCT+TGG | + | chr1.3:2643544-2643563 | None:intergenic | 40.0% |
! | ATTTTATGGAAGAGACAGGG+AGG | - | chr1.3:2639733-2639752 | MS.gene26972:CDS | 40.0% |
! | CTGGAAGTTGGTCATCATTA+AGG | + | chr1.3:2643514-2643533 | None:intergenic | 40.0% |
! | CTTTTCTCAGATGGAAAGAG+AGG | - | chr1.3:2643692-2643711 | MS.gene26972:intron | 40.0% |
! | GAAAGGAGCACAACATTGTT+AGG | + | chr1.3:2641932-2641951 | None:intergenic | 40.0% |
! | GAGAAGTTGATCTAAACGGT+TGG | - | chr1.3:2640179-2640198 | MS.gene26972:intron | 40.0% |
! | GAGAGCATGACAAACTGAAA+GGG | + | chr1.3:2643194-2643213 | None:intergenic | 40.0% |
! | GATTGGTTGGTGTGAGAATT+TGG | - | chr1.3:2642150-2642169 | MS.gene26972:intron | 40.0% |
! | GCCCGGTGTTTCTTTTTATA+AGG | + | chr1.3:2640456-2640475 | None:intergenic | 40.0% |
! | GTGAGAATTTGGTAACTCGT+GGG | - | chr1.3:2642161-2642180 | MS.gene26972:intron | 40.0% |
! | TCAAAAGATGCTGATGACGA+AGG | - | chr1.3:2643597-2643616 | MS.gene26972:intron | 40.0% |
! | TGAAACACTCAGAGCTTGTT+TGG | + | chr1.3:2639517-2639536 | None:intergenic | 40.0% |
! | TGGGGAGAAGTTGATCTAAA+CGG | - | chr1.3:2640175-2640194 | MS.gene26972:intron | 40.0% |
! | TGGTTCAAAGCAAGCTTTTG+AGG | - | chr1.3:2640841-2640860 | MS.gene26972:CDS | 40.0% |
! | TGTGAGAATTTGGTAACTCG+TGG | - | chr1.3:2642160-2642179 | MS.gene26972:intron | 40.0% |
! | TGTTGATAAGGCGGACATAA+CGG | - | chr1.3:2639771-2639790 | MS.gene26972:CDS | 40.0% |
!! | AATATGCTGGCTTTCATGGT+TGG | - | chr1.3:2640821-2640840 | MS.gene26972:CDS | 40.0% |
!! | ACAAACTGGGTATTGGAACT+TGG | + | chr1.3:2641180-2641199 | None:intergenic | 40.0% |
!! | AGGAAATATGCTGGCTTTCA+TGG | - | chr1.3:2640817-2640836 | MS.gene26972:CDS | 40.0% |
!! | ATTATTGGTGCTGCAGAATC+CGG | - | chr1.3:2639684-2639703 | MS.gene26972:intron | 40.0% |
!! | CTTGGTGTTCAGATCAAAGA+TGG | - | chr1.3:2639829-2639848 | MS.gene26972:CDS | 40.0% |
!! | TTGTTTGGTTTGGCTTGGTT+TGG | - | chr1.3:2639947-2639966 | MS.gene26972:intron | 40.0% |
!!! | TGGGTTCTTTTTTTCAGGGT+GGG | - | chr1.3:2640627-2640646 | MS.gene26972:CDS | 40.0% |
!!! | TTGTCATTTTTGCGGCTTCA+GGG | - | chr1.3:2641556-2641575 | MS.gene26972:intron | 40.0% |
AAAAACGGCAGATAACTGCC+CGG | + | chr1.3:2640473-2640492 | None:intergenic | 45.0% | |
AAAAATCTGTCGGGTATGGC+TGG | - | chr1.3:2643864-2643883 | MS.gene26972:intron | 45.0% | |
AAAGTCTGCCCTTTCCGAAT+AGG | + | chr1.3:2641820-2641839 | None:intergenic | 45.0% | |
AACACCTTCGGAGTAACTGT+TGG | - | chr1.3:2640121-2640140 | MS.gene26972:intron | 45.0% | |
AAGCACCACTACCTTCAATC+TGG | - | chr1.3:2640554-2640573 | MS.gene26972:intron | 45.0% | |
ACACCTTCGGAGTAACTGTT+GGG | - | chr1.3:2640122-2640141 | MS.gene26972:intron | 45.0% | |
AGAGAGAGAGAGAGAGCTTA+CGG | + | chr1.3:2638579-2638598 | None:intergenic | 45.0% | |
AGGATCCAAATGCACCTAAG+AGG | - | chr1.3:2643649-2643668 | MS.gene26972:intron | 45.0% | |
ATATGCGTATGTCTTGTGGG+AGG | - | chr1.3:2643247-2643266 | MS.gene26972:intron | 45.0% | |
ATGGCAGCATCATGAAGACA+TGG | - | chr1.3:2640320-2640339 | MS.gene26972:CDS | 45.0% | |
CAAAATCCAGTACAGCAGTG+TGG | - | chr1.3:2641594-2641613 | MS.gene26972:intron | 45.0% | |
CATTTCCAAAGCAGCTCTTG+AGG | + | chr1.3:2642110-2642129 | None:intergenic | 45.0% | |
CGTTACAAGGATGAGATGAG+TGG | - | chr1.3:2644048-2644067 | MS.gene26972:intron | 45.0% | |
CTTGATCCTCCTATTCGGAA+AGG | - | chr1.3:2641808-2641827 | MS.gene26972:CDS | 45.0% | |
GACACAATCGAACAGAAGCA+TGG | + | chr1.3:2641465-2641484 | None:intergenic | 45.0% | |
GAGGAAATGGTGAAGGTTTG+AGG | + | chr1.3:2638638-2638657 | None:intergenic | 45.0% | |
GCACCGCCTTTGTAAAATTC+AGG | - | chr1.3:2640423-2640442 | MS.gene26972:intron | 45.0% | |
GGACAAACCACGCAATATTG+TGG | + | chr1.3:2642265-2642284 | None:intergenic | 45.0% | |
GGATCCAAATGCACCTAAGA+GGG | - | chr1.3:2643650-2643669 | MS.gene26972:intron | 45.0% | |
GGTTCTCCTACTGATGATTC+TGG | - | chr1.3:2643376-2643395 | MS.gene26972:intron | 45.0% | |
GTCTCCCAAACAAACCTTCA+AGG | - | chr1.3:2640878-2640897 | MS.gene26972:intron | 45.0% | |
TCAAGCCCTTAGAACTGCAT+GGG | + | chr1.3:2642776-2642795 | None:intergenic | 45.0% | |
TCTGCACCAGAATCATCAGT+AGG | + | chr1.3:2643385-2643404 | None:intergenic | 45.0% | |
TGACACAACTGGAGCAAATG+AGG | - | chr1.3:2640934-2640953 | MS.gene26972:intron | 45.0% | |
TGCAGTCTTTCCCTTTATGG+TGG | - | chr1.3:2640714-2640733 | MS.gene26972:intron | 45.0% | |
TGCCAAGAAGGAACCAAAGA+AGG | - | chr1.3:2643539-2643558 | MS.gene26972:intron | 45.0% | |
TGTGATGTTGGAGTTTCACG+TGG | - | chr1.3:2640910-2640929 | MS.gene26972:intron | 45.0% | |
TTCAACAACATTACCCTCGG+CGG | - | chr1.3:2638542-2638561 | MS.gene26972:CDS | 45.0% | |
TTCAAGCCCAAGTTTGGATG+AGG | + | chr1.3:2641043-2641062 | None:intergenic | 45.0% | |
TTCAAGCCCTTAGAACTGCA+TGG | + | chr1.3:2642777-2642796 | None:intergenic | 45.0% | |
TTCTGTTACTGGGCGCAATT+GGG | - | chr1.3:2640156-2640175 | MS.gene26972:intron | 45.0% | |
TTTCACGTGGATGACACAAC+TGG | - | chr1.3:2640923-2640942 | MS.gene26972:intron | 45.0% | |
TTTCTGTTACTGGGCGCAAT+TGG | - | chr1.3:2640155-2640174 | MS.gene26972:intron | 45.0% | |
! | AAAGATGCTGATGACGAAGG+AGG | - | chr1.3:2643600-2643619 | MS.gene26972:intron | 45.0% |
! | AGTTTGGAACAACTTGCAGC+TGG | - | chr1.3:2641002-2641021 | MS.gene26972:intron | 45.0% |
! | ATGGGGTTTGCTTCTCAAAC+AGG | - | chr1.3:2640651-2640670 | MS.gene26972:CDS | 45.0% |
! | CAAGTTGGAGCTGTCTTACA+AGG | - | chr1.3:2642030-2642049 | MS.gene26972:intron | 45.0% |
! | CACTCAGAGCTTGTTTGGAT+TGG | + | chr1.3:2639512-2639531 | None:intergenic | 45.0% |
! | GTTGATAAGGCGGACATAAC+GGG | - | chr1.3:2639772-2639791 | MS.gene26972:CDS | 45.0% |
! | TTCTTTGGTTCCTTCTTGGC+AGG | + | chr1.3:2643540-2643559 | None:intergenic | 45.0% |
!! | ATTCACTGGTTTCCGTGATC+AGG | - | chr1.3:2639864-2639883 | MS.gene26972:intron | 45.0% |
!! | GGGTATTGGAACTTGGTACA+TGG | + | chr1.3:2641173-2641192 | None:intergenic | 45.0% |
!! | TTATTGGTGCTGCAGAATCC+GGG | - | chr1.3:2639685-2639704 | MS.gene26972:intron | 45.0% |
!!! | CAGTTACTCCGAAGGTGTTT+TGG | + | chr1.3:2640120-2640139 | None:intergenic | 45.0% |
!!! | CTTGTCATTTTTGCGGCTTC+AGG | - | chr1.3:2641555-2641574 | MS.gene26972:intron | 45.0% |
!!! | CTTTTTTTCAGGGTGGGGAT+GGG | - | chr1.3:2640633-2640652 | MS.gene26972:CDS | 45.0% |
!!! | GGGTTCTTTTTTTCAGGGTG+GGG | - | chr1.3:2640628-2640647 | MS.gene26972:CDS | 45.0% |
!!! | GTGGGTTCTTTTTTTCAGGG+TGG | - | chr1.3:2640626-2640645 | MS.gene26972:CDS | 45.0% |
!!! | TCTTTTTTTCAGGGTGGGGA+TGG | - | chr1.3:2640632-2640651 | MS.gene26972:CDS | 45.0% |
!!! | TTTTTTTCAGGGTGGGGATG+GGG | - | chr1.3:2640634-2640653 | MS.gene26972:CDS | 45.0% |
!! | AATTACAATAATAAAAATTA+GGG | + | chr1.3:2638759-2638778 | None:intergenic | 5.0% |
!! | TAATTACAATAATAAAAATT+AGG | + | chr1.3:2638760-2638779 | None:intergenic | 5.0% |
!!! | TATATATATATATATAGTTT+TGG | - | chr1.3:2640959-2640978 | MS.gene26972:intron | 5.0% |
AAACCAGACAGTGCCCTCTT+AGG | + | chr1.3:2643666-2643685 | None:intergenic | 50.0% | |
AACGGGCGTAACATGGATGA+AGG | - | chr1.3:2639789-2639808 | MS.gene26972:CDS | 50.0% | |
ACAAACTCACCTGAGCAGGA+GGG | + | chr1.3:2641218-2641237 | None:intergenic | 50.0% | |
ACAGACAAACTCACCTGAGC+AGG | + | chr1.3:2641222-2641241 | None:intergenic | 50.0% | |
AGCCCAAGTTTGGATGAGGA+AGG | + | chr1.3:2641039-2641058 | None:intergenic | 50.0% | |
AGTGCCCTCTTAGGTGCATT+TGG | + | chr1.3:2643657-2643676 | None:intergenic | 50.0% | |
CACCTTCGGAGTAACTGTTG+GGG | - | chr1.3:2640123-2640142 | MS.gene26972:intron | 50.0% | |
CGCATCAGAAATGAAGCTGG+TGG | - | chr1.3:2642888-2642907 | MS.gene26972:CDS | 50.0% | |
CTCTTGAGGAGCAGTATCTC+AGG | + | chr1.3:2642096-2642115 | None:intergenic | 50.0% | |
CTTCCAGAAACCTGCCAAGA+AGG | - | chr1.3:2643527-2643546 | MS.gene26972:intron | 50.0% | |
GAATTTGAGCGACATGCTGC+TGG | - | chr1.3:2642567-2642586 | MS.gene26972:intron | 50.0% | |
GACGGAGAACTACCTGATCA+CGG | + | chr1.3:2639879-2639898 | None:intergenic | 50.0% | |
GACTCTGATGCTAGCCAAAG+TGG | - | chr1.3:2643406-2643425 | MS.gene26972:intron | 50.0% | |
GAGCGCATCAGAAATGAAGC+TGG | - | chr1.3:2642885-2642904 | MS.gene26972:CDS | 50.0% | |
GCATGTTCAATACACAGCGG+AGG | - | chr1.3:2643984-2644003 | MS.gene26972:intron | 50.0% | |
GGAGGAGAAGGAACCTTATG+AGG | - | chr1.3:2644002-2644021 | MS.gene26972:intron | 50.0% | |
GTACCCTCATATCGTGATGC+AGG | - | chr1.3:2641840-2641859 | MS.gene26972:intron | 50.0% | |
GTTCCTTCTTGGCAGGTTTC+TGG | + | chr1.3:2643533-2643552 | None:intergenic | 50.0% | |
TCAATACACAGCGGAGGAGA+AGG | - | chr1.3:2643990-2644009 | MS.gene26972:intron | 50.0% | |
TCTATGGCTGATGTTGGTGC+TGG | - | chr1.3:2641332-2641351 | MS.gene26972:intron | 50.0% | |
TCTGATGCTAGCCAAAGTGG+TGG | - | chr1.3:2643409-2643428 | MS.gene26972:intron | 50.0% | |
TCTGTTACTGGGCGCAATTG+GGG | - | chr1.3:2640157-2640176 | MS.gene26972:intron | 50.0% | |
TGGAGATGAAAGTGACGAGG+AGG | - | chr1.3:2642908-2642927 | MS.gene26972:CDS | 50.0% | |
TGGTGGAGATGAAAGTGACG+AGG | - | chr1.3:2642905-2642924 | MS.gene26972:CDS | 50.0% | |
TTATGGAAGAGACAGGGAGG+TGG | - | chr1.3:2639736-2639755 | MS.gene26972:CDS | 50.0% | |
TTTCTGATGCGCTCGAGATG+TGG | + | chr1.3:2642879-2642898 | None:intergenic | 50.0% | |
! | AGGCTTGGTAACTTTGCCTC+CGG | + | chr1.3:2642286-2642305 | None:intergenic | 50.0% |
! | ATATTGCGTGGTTTGTCCGG+AGG | - | chr1.3:2642267-2642286 | MS.gene26972:intron | 50.0% |
! | ATTTTTGCGGCTTCAGGGAC+AGG | - | chr1.3:2641561-2641580 | MS.gene26972:intron | 50.0% |
! | CTTGGCAGGTTTCTGGAAGT+TGG | + | chr1.3:2643526-2643545 | None:intergenic | 50.0% |
! | GTTCTCGACAAGGATGATGG+AGG | - | chr1.3:2643355-2643374 | MS.gene26972:intron | 50.0% |
! | TCCTGCCCATGCAGTTCTAA+GGG | - | chr1.3:2642768-2642787 | MS.gene26972:intron | 50.0% |
! | TCTTGGGCTTTGGCCTCATA+AGG | + | chr1.3:2644018-2644037 | None:intergenic | 50.0% |
!! | TATTGGTGCTGCAGAATCCG+GGG | - | chr1.3:2639686-2639705 | MS.gene26972:intron | 50.0% |
CCTCTGTCTCACCACCACTT+TGG | + | chr1.3:2643423-2643442 | None:intergenic | 55.0% | |
CTCCCCAACAGTTACTCCGA+AGG | + | chr1.3:2640128-2640147 | None:intergenic | 55.0% | |
CTGCTCCTCAAGAGCTGCTT+TGG | - | chr1.3:2642102-2642121 | MS.gene26972:intron | 55.0% | |
GACAAACTCACCTGAGCAGG+AGG | + | chr1.3:2641219-2641238 | None:intergenic | 55.0% | |
GGAGGCAAAGTTACCAAGCC+TGG | - | chr1.3:2642285-2642304 | MS.gene26972:intron | 55.0% | |
GTCCTGCCCATGCAGTTCTA+AGG | - | chr1.3:2642767-2642786 | MS.gene26972:intron | 55.0% | |
GTCTGCCCTTTCCGAATAGG+AGG | + | chr1.3:2641817-2641836 | None:intergenic | 55.0% | |
TTTGAGCGACATGCTGCTGG+TGG | - | chr1.3:2642570-2642589 | MS.gene26972:intron | 55.0% | |
! | CCAAAGTGGTGGTGAGACAG+AGG | - | chr1.3:2643420-2643439 | MS.gene26972:intron | 55.0% |
!! | ACGGACGTGGGAAGAGTACT+TGG | - | chr1.3:2643831-2643850 | MS.gene26972:intron | 55.0% |
!! | ATGGCTGATGTTGGTGCTGG+AGG | - | chr1.3:2641335-2641354 | MS.gene26972:intron | 55.0% |
!! | CGGACATAACGGGCGTAACA+TGG | - | chr1.3:2639782-2639801 | MS.gene26972:CDS | 55.0% |
GCCCTTAGAACTGCATGGGC+AGG | + | chr1.3:2642772-2642791 | None:intergenic | 60.0% | |
GCGCTCGAGATGTGGATCGA+CGG | + | chr1.3:2642871-2642890 | None:intergenic | 60.0% | |
GGCGAACCACACTGCTGTAC+TGG | + | chr1.3:2641603-2641622 | None:intergenic | 60.0% | |
GTCTTGTGGGAGGCTGCATG+TGG | - | chr1.3:2643257-2643276 | MS.gene26972:intron | 60.0% | |
TGAAGATCGCCCTCCTGCTC+AGG | - | chr1.3:2641206-2641225 | MS.gene26972:intron | 60.0% | |
!! | GCACCTAAGAGGGCACTGTC+TGG | - | chr1.3:2643660-2643679 | MS.gene26972:intron | 60.0% |
AACATTACCCTCGGCGGCCG+TGG | - | chr1.3:2638548-2638567 | MS.gene26972:CDS | 65.0% | |
TGTGGGAGGCTGCATGTGGC+AGG | - | chr1.3:2643261-2643280 | MS.gene26972:intron | 65.0% | |
!! | GAGAGCTTACGGTGCCGCCA+CGG | + | chr1.3:2638568-2638587 | None:intergenic | 65.0% |
ATTACCCTCGGCGGCCGTGG+CGG | - | chr1.3:2638551-2638570 | MS.gene26972:CDS | 70.0% | |
!! | GGTGCCGCCACGGCCGCCGA+GGG | + | chr1.3:2638558-2638577 | None:intergenic | 85.0% |
!!! | CGGTGCCGCCACGGCCGCCG+AGG | + | chr1.3:2638559-2638578 | None:intergenic | 90.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 2638524 | 2644131 | 2638524 | ID=MS.gene26972 |
chr1.3 | mRNA | 2638524 | 2644131 | 2638524 | ID=MS.gene26972.t1;Parent=MS.gene26972 |
chr1.3 | exon | 2644078 | 2644131 | 2644078 | ID=MS.gene26972.t1.exon1;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2644078 | 2644131 | 2644078 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2642770 | 2642955 | 2642770 | ID=MS.gene26972.t1.exon2;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2642770 | 2642955 | 2642770 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2642459 | 2642564 | 2642459 | ID=MS.gene26972.t1.exon3;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2642459 | 2642564 | 2642459 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2641700 | 2641836 | 2641700 | ID=MS.gene26972.t1.exon4;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2641700 | 2641836 | 2641700 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2641428 | 2641511 | 2641428 | ID=MS.gene26972.t1.exon5;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2641428 | 2641511 | 2641428 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2641250 | 2641344 | 2641250 | ID=MS.gene26972.t1.exon6;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2641250 | 2641344 | 2641250 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2641016 | 2641124 | 2641016 | ID=MS.gene26972.t1.exon7;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2641016 | 2641124 | 2641016 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2640794 | 2640880 | 2640794 | ID=MS.gene26972.t1.exon8;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2640794 | 2640880 | 2640794 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2640604 | 2640696 | 2640604 | ID=MS.gene26972.t1.exon9;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2640604 | 2640696 | 2640604 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2640218 | 2640415 | 2640218 | ID=MS.gene26972.t1.exon10;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2640218 | 2640415 | 2640218 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2639955 | 2640100 | 2639955 | ID=MS.gene26972.t1.exon11;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2639955 | 2640100 | 2639955 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2639726 | 2639873 | 2639726 | ID=MS.gene26972.t1.exon12;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2639726 | 2639873 | 2639726 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2639214 | 2639312 | 2639214 | ID=MS.gene26972.t1.exon13;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2639214 | 2639312 | 2639214 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2638942 | 2639121 | 2638942 | ID=MS.gene26972.t1.exon14;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2638942 | 2639121 | 2638942 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2638779 | 2638857 | 2638779 | ID=MS.gene26972.t1.exon15;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2638779 | 2638857 | 2638779 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
chr1.3 | exon | 2638524 | 2638654 | 2638524 | ID=MS.gene26972.t1.exon16;Parent=MS.gene26972.t1 |
chr1.3 | CDS | 2638524 | 2638654 | 2638524 | ID=cds.MS.gene26972.t1;Parent=MS.gene26972.t1 |
Gene Sequence |
Protein sequence |