Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90689.t1 | XP_013466118.1 | 99.8 | 643 | 1 | 0 | 1 | 643 | 1 | 643 | 0.00E+00 | 1096.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90689.t1 | O04235 | 92.4 | 644 | 46 | 3 | 1 | 643 | 1 | 642 | 1.4e-302 | 1039.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90689.t1 | A0A072VEB0 | 99.8 | 643 | 1 | 0 | 1 | 643 | 1 | 643 | 0.0e+00 | 1096.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene90689.t1 | TR | HMG |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene90689 | 0.840825 | 6.89E-58 | -1.69E-46 |
MS.gene049159 | MS.gene90689 | 0.844759 | 6.20E-59 | -1.69E-46 |
MS.gene049190 | MS.gene90689 | 0.818427 | 1.97E-52 | -1.69E-46 |
MS.gene049341 | MS.gene90689 | 0.848505 | 5.87E-60 | -1.69E-46 |
MS.gene049404 | MS.gene90689 | 0.820487 | 6.68E-53 | -1.69E-46 |
MS.gene049435 | MS.gene90689 | 0.813951 | 1.97E-51 | -1.69E-46 |
MS.gene049501 | MS.gene90689 | 0.800144 | 1.65E-48 | -1.69E-46 |
MS.gene049824 | MS.gene90689 | 0.82009 | 8.24E-53 | -1.69E-46 |
MS.gene049850 | MS.gene90689 | 0.866841 | 2.12E-65 | -1.69E-46 |
MS.gene049979 | MS.gene90689 | 0.81599 | 6.96E-52 | -1.69E-46 |
MS.gene050020 | MS.gene90689 | 0.852345 | 4.91E-61 | -1.69E-46 |
MS.gene05016 | MS.gene90689 | 0.815802 | 7.67E-52 | -1.69E-46 |
MS.gene050384 | MS.gene90689 | 0.808243 | 3.41E-50 | -1.69E-46 |
MS.gene050442 | MS.gene90689 | 0.806662 | 7.38E-50 | -1.69E-46 |
MS.gene050551 | MS.gene90689 | 0.822388 | 2.43E-53 | -1.69E-46 |
MS.gene050689 | MS.gene90689 | 0.853174 | 2.85E-61 | -1.69E-46 |
MS.gene050807 | MS.gene90689 | 0.849836 | 2.50E-60 | -1.69E-46 |
MS.gene050959 | MS.gene90689 | 0.817487 | 3.21E-52 | -1.69E-46 |
MS.gene051102 | MS.gene90689 | 0.847068 | 1.46E-59 | -1.69E-46 |
MS.gene051180 | MS.gene90689 | 0.821921 | 3.12E-53 | -1.69E-46 |
MS.gene051198 | MS.gene90689 | 0.822747 | 2.01E-53 | -1.69E-46 |
MS.gene051247 | MS.gene90689 | 0.813128 | 2.99E-51 | -1.69E-46 |
MS.gene051279 | MS.gene90689 | 0.803018 | 4.26E-49 | -1.69E-46 |
MS.gene051328 | MS.gene90689 | 0.821884 | 3.18E-53 | -1.69E-46 |
MS.gene05157 | MS.gene90689 | 0.863537 | 2.32E-64 | -1.69E-46 |
MS.gene051719 | MS.gene90689 | 0.855262 | 7.10E-62 | -1.69E-46 |
MS.gene051720 | MS.gene90689 | 0.845242 | 4.59E-59 | -1.69E-46 |
MS.gene051744 | MS.gene90689 | 0.842219 | 2.96E-58 | -1.69E-46 |
MS.gene051789 | MS.gene90689 | 0.803093 | 4.11E-49 | -1.69E-46 |
MS.gene051800 | MS.gene90689 | 0.814332 | 1.63E-51 | -1.69E-46 |
MS.gene052012 | MS.gene90689 | 0.805288 | 1.44E-49 | -1.69E-46 |
MS.gene052020 | MS.gene90689 | 0.856811 | 2.50E-62 | -1.69E-46 |
MS.gene052133 | MS.gene90689 | 0.820361 | 7.14E-53 | -1.69E-46 |
MS.gene052307 | MS.gene90689 | 0.813689 | 2.25E-51 | -1.69E-46 |
MS.gene052323 | MS.gene90689 | 0.858815 | 6.36E-63 | -1.69E-46 |
MS.gene052335 | MS.gene90689 | 0.800473 | 1.42E-48 | -1.69E-46 |
MS.gene052397 | MS.gene90689 | 0.817938 | 2.54E-52 | -1.69E-46 |
MS.gene052514 | MS.gene90689 | 0.807506 | 4.89E-50 | -1.69E-46 |
MS.gene052516 | MS.gene90689 | 0.864816 | 9.26E-65 | -1.69E-46 |
MS.gene052582 | MS.gene90689 | 0.812682 | 3.75E-51 | -1.69E-46 |
MS.gene052584 | MS.gene90689 | 0.806908 | 6.54E-50 | -1.69E-46 |
MS.gene052609 | MS.gene90689 | 0.830336 | 3.11E-55 | -1.69E-46 |
MS.gene052611 | MS.gene90689 | 0.840175 | 1.02E-57 | -1.69E-46 |
MS.gene052612 | MS.gene90689 | 0.819808 | 9.56E-53 | -1.69E-46 |
MS.gene052665 | MS.gene90689 | 0.863955 | 1.72E-64 | -1.69E-46 |
MS.gene052732 | MS.gene90689 | 0.819561 | 1.09E-52 | -1.69E-46 |
MS.gene052773 | MS.gene90689 | 0.810212 | 1.29E-50 | -1.69E-46 |
MS.gene052863 | MS.gene90689 | 0.815114 | 1.09E-51 | -1.69E-46 |
MS.gene052896 | MS.gene90689 | 0.841548 | 4.45E-58 | -1.69E-46 |
MS.gene053008 | MS.gene90689 | 0.837538 | 4.90E-57 | -1.69E-46 |
MS.gene053079 | MS.gene90689 | 0.851121 | 1.09E-60 | -1.69E-46 |
MS.gene053144 | MS.gene90689 | 0.826888 | 2.12E-54 | -1.69E-46 |
MS.gene053174 | MS.gene90689 | 0.825605 | 4.28E-54 | -1.69E-46 |
MS.gene053221 | MS.gene90689 | 0.805561 | 1.26E-49 | -1.69E-46 |
MS.gene053226 | MS.gene90689 | 0.837842 | 4.09E-57 | -1.69E-46 |
MS.gene053563 | MS.gene90689 | 0.828807 | 7.32E-55 | -1.69E-46 |
MS.gene053565 | MS.gene90689 | 0.854646 | 1.07E-61 | -1.69E-46 |
MS.gene053581 | MS.gene90689 | 0.808494 | 3.01E-50 | -1.69E-46 |
MS.gene053599 | MS.gene90689 | 0.832632 | 8.46E-56 | -1.69E-46 |
MS.gene05364 | MS.gene90689 | 0.834377 | 3.11E-56 | -1.69E-46 |
MS.gene054139 | MS.gene90689 | 0.802738 | 4.87E-49 | -1.69E-46 |
MS.gene054550 | MS.gene90689 | 0.823388 | 1.42E-53 | -1.69E-46 |
MS.gene054584 | MS.gene90689 | 0.840725 | 7.31E-58 | -1.69E-46 |
MS.gene05462 | MS.gene90689 | 0.857057 | 2.11E-62 | -1.69E-46 |
MS.gene054651 | MS.gene90689 | 0.808361 | 3.22E-50 | -1.69E-46 |
MS.gene055227 | MS.gene90689 | 0.800065 | 1.72E-48 | -1.69E-46 |
MS.gene055465 | MS.gene90689 | 0.852253 | 5.21E-61 | -1.69E-46 |
MS.gene055466 | MS.gene90689 | 0.843615 | 1.26E-58 | -1.69E-46 |
MS.gene055468 | MS.gene90689 | 0.836569 | 8.67E-57 | -1.69E-46 |
MS.gene055469 | MS.gene90689 | 0.841201 | 5.49E-58 | -1.69E-46 |
MS.gene055512 | MS.gene90689 | 0.863437 | 2.49E-64 | -1.69E-46 |
MS.gene055513 | MS.gene90689 | 0.812352 | 4.43E-51 | -1.69E-46 |
MS.gene055580 | MS.gene90689 | -0.804391 | 2.21E-49 | -1.69E-46 |
MS.gene055818 | MS.gene90689 | 0.800151 | 1.65E-48 | -1.69E-46 |
MS.gene055890 | MS.gene90689 | 0.836435 | 9.38E-57 | -1.69E-46 |
MS.gene055891 | MS.gene90689 | 0.831012 | 2.12E-55 | -1.69E-46 |
MS.gene055926 | MS.gene90689 | 0.815215 | 1.04E-51 | -1.69E-46 |
MS.gene056005 | MS.gene90689 | 0.800237 | 1.58E-48 | -1.69E-46 |
MS.gene05604 | MS.gene90689 | 0.803574 | 3.27E-49 | -1.69E-46 |
MS.gene056173 | MS.gene90689 | 0.81109 | 8.33E-51 | -1.69E-46 |
MS.gene056215 | MS.gene90689 | 0.805134 | 1.55E-49 | -1.69E-46 |
MS.gene056308 | MS.gene90689 | 0.856512 | 3.06E-62 | -1.69E-46 |
MS.gene056366 | MS.gene90689 | 0.820208 | 7.74E-53 | -1.69E-46 |
MS.gene056507 | MS.gene90689 | 0.860256 | 2.35E-63 | -1.69E-46 |
MS.gene056553 | MS.gene90689 | 0.841288 | 5.20E-58 | -1.69E-46 |
MS.gene056589 | MS.gene90689 | 0.818506 | 1.89E-52 | -1.69E-46 |
MS.gene056643 | MS.gene90689 | 0.847462 | 1.14E-59 | -1.69E-46 |
MS.gene056760 | MS.gene90689 | 0.815555 | 8.71E-52 | -1.69E-46 |
MS.gene057057 | MS.gene90689 | 0.807679 | 4.49E-50 | -1.69E-46 |
MS.gene057060 | MS.gene90689 | 0.810847 | 9.41E-51 | -1.69E-46 |
MS.gene057360 | MS.gene90689 | 0.816414 | 5.60E-52 | -1.69E-46 |
MS.gene057446 | MS.gene90689 | 0.838653 | 2.53E-57 | -1.69E-46 |
MS.gene057598 | MS.gene90689 | 0.802379 | 5.77E-49 | -1.69E-46 |
MS.gene057693 | MS.gene90689 | 0.802575 | 5.26E-49 | -1.69E-46 |
MS.gene057869 | MS.gene90689 | 0.868491 | 6.28E-66 | -1.69E-46 |
MS.gene057915 | MS.gene90689 | 0.852607 | 4.13E-61 | -1.69E-46 |
MS.gene058010 | MS.gene90689 | 0.835509 | 1.61E-56 | -1.69E-46 |
MS.gene05847 | MS.gene90689 | 0.801384 | 9.23E-49 | -1.69E-46 |
MS.gene058625 | MS.gene90689 | 0.808848 | 2.53E-50 | -1.69E-46 |
MS.gene058636 | MS.gene90689 | 0.819922 | 9.00E-53 | -1.69E-46 |
MS.gene058829 | MS.gene90689 | 0.811331 | 7.39E-51 | -1.69E-46 |
MS.gene058852 | MS.gene90689 | 0.808443 | 3.09E-50 | -1.69E-46 |
MS.gene058919 | MS.gene90689 | 0.822765 | 1.99E-53 | -1.69E-46 |
MS.gene058979 | MS.gene90689 | 0.805245 | 1.47E-49 | -1.69E-46 |
MS.gene058982 | MS.gene90689 | 0.80102 | 1.10E-48 | -1.69E-46 |
MS.gene059171 | MS.gene90689 | 0.806518 | 7.91E-50 | -1.69E-46 |
MS.gene059570 | MS.gene90689 | 0.810696 | 1.01E-50 | -1.69E-46 |
MS.gene059713 | MS.gene90689 | 0.822796 | 1.96E-53 | -1.69E-46 |
MS.gene059725 | MS.gene90689 | 0.841875 | 3.64E-58 | -1.69E-46 |
MS.gene05978 | MS.gene90689 | 0.891971 | 2.44E-74 | -1.69E-46 |
MS.gene059842 | MS.gene90689 | 0.802952 | 4.39E-49 | -1.69E-46 |
MS.gene059937 | MS.gene90689 | 0.832259 | 1.05E-55 | -1.69E-46 |
MS.gene059965 | MS.gene90689 | 0.804384 | 2.22E-49 | -1.69E-46 |
MS.gene060194 | MS.gene90689 | 0.845078 | 5.08E-59 | -1.69E-46 |
MS.gene060355 | MS.gene90689 | 0.801745 | 7.79E-49 | -1.69E-46 |
MS.gene060470 | MS.gene90689 | 0.81342 | 2.58E-51 | -1.69E-46 |
MS.gene060587 | MS.gene90689 | 0.872713 | 2.57E-67 | -1.69E-46 |
MS.gene060637 | MS.gene90689 | 0.836051 | 1.17E-56 | -1.69E-46 |
MS.gene060803 | MS.gene90689 | 0.805986 | 1.02E-49 | -1.69E-46 |
MS.gene060918 | MS.gene90689 | 0.805054 | 1.61E-49 | -1.69E-46 |
MS.gene061006 | MS.gene90689 | 0.81188 | 5.61E-51 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90689.t1 | MTR_1g022345 | 99.844 | 643 | 1 | 0 | 1 | 643 | 1 | 643 | 0.0 | 1320 |
MS.gene90689.t1 | MTR_5g082570 | 89.043 | 648 | 66 | 1 | 1 | 643 | 1 | 648 | 0.0 | 1117 |
MS.gene90689.t1 | MTR_3g108380 | 75.000 | 60 | 15 | 0 | 541 | 600 | 32 | 91 | 2.16e-17 | 78.2 |
MS.gene90689.t1 | MTR_3g115580 | 46.154 | 91 | 47 | 2 | 539 | 627 | 25 | 115 | 5.12e-13 | 67.4 |
MS.gene90689.t1 | MTR_7g068280 | 45.455 | 77 | 41 | 1 | 554 | 629 | 47 | 123 | 2.13e-12 | 66.2 |
MS.gene90689.t1 | MTR_8g073345 | 43.023 | 86 | 48 | 1 | 543 | 627 | 22 | 107 | 6.90e-12 | 63.5 |
MS.gene90689.t1 | MTR_8g073345 | 43.023 | 86 | 48 | 1 | 543 | 627 | 22 | 107 | 9.40e-12 | 63.5 |
MS.gene90689.t1 | MTR_5g024180 | 42.708 | 96 | 49 | 2 | 547 | 641 | 25 | 115 | 7.29e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90689.t1 | AT3G28730 | 76.006 | 646 | 150 | 5 | 1 | 642 | 1 | 645 | 0.0 | 934 |
MS.gene90689.t1 | AT3G51880 | 47.059 | 85 | 44 | 1 | 545 | 628 | 40 | 124 | 3.69e-15 | 74.7 |
MS.gene90689.t1 | AT3G51880 | 47.059 | 85 | 44 | 1 | 545 | 628 | 40 | 124 | 3.74e-15 | 73.9 |
MS.gene90689.t1 | AT3G51880 | 47.059 | 85 | 44 | 1 | 545 | 628 | 40 | 124 | 4.73e-15 | 74.3 |
MS.gene90689.t1 | AT3G51880 | 47.059 | 85 | 44 | 1 | 545 | 628 | 40 | 124 | 4.73e-15 | 74.3 |
MS.gene90689.t1 | AT3G51880 | 47.059 | 85 | 44 | 1 | 545 | 628 | 40 | 124 | 4.73e-15 | 74.3 |
MS.gene90689.t1 | AT1G20693 | 48.684 | 76 | 38 | 1 | 553 | 627 | 33 | 108 | 3.97e-13 | 67.8 |
MS.gene90689.t1 | AT1G20693 | 48.684 | 76 | 38 | 1 | 553 | 627 | 33 | 108 | 4.06e-13 | 67.8 |
MS.gene90689.t1 | AT1G20693 | 48.684 | 76 | 38 | 1 | 553 | 627 | 33 | 108 | 4.48e-13 | 67.4 |
MS.gene90689.t1 | AT1G20696 | 47.368 | 76 | 39 | 1 | 553 | 627 | 30 | 105 | 3.08e-11 | 62.0 |
Find 162 sgRNAs with CRISPR-Local
Find 384 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCTTCTTTGGTTCCTTCT+TGG | 0.242213 | 1.4:+1938202 | None:intergenic |
GTCCTGCCCATGCAGTTCTA+AGG | 0.253010 | 1.4:-1938976 | MS.gene90689:intron |
AGAATAAGAGTGGGAGGTTT+AGG | 0.278835 | 1.4:+1939338 | None:intergenic |
AGGAAATATGCTGGCTTTCA+TGG | 0.282409 | 1.4:-1940922 | MS.gene90689:CDS |
AAAGAAGGATTTGCCTTCTA+AGG | 0.286151 | 1.4:-1938189 | MS.gene90689:CDS |
CCGTGATAAAATAATGTCTA+TGG | 0.288359 | 1.4:-1940427 | MS.gene90689:CDS |
TTTCTGTTACTGGGCGCAAT+TGG | 0.293918 | 1.4:-1941584 | MS.gene90689:CDS |
TTAGAAGGCAAATCCTTCTT+TGG | 0.294241 | 1.4:+1938191 | None:intergenic |
CAGTTACTCCGAAGGTGTTT+TGG | 0.314648 | 1.4:+1941622 | None:intergenic |
GAGAAGCAACTTTCTGTTAC+TGG | 0.317850 | 1.4:-1941594 | MS.gene90689:CDS |
TTCTGTTACTGGGCGCAATT+GGG | 0.318614 | 1.4:-1941583 | MS.gene90689:CDS |
ATTCATTTCTCTGAATATTT+CGG | 0.320481 | 1.4:+1939090 | None:intergenic |
CAACCCATGAATATTGATTC+AGG | 0.326088 | 1.4:-1937659 | MS.gene90689:CDS |
ACAATATTGCGTGGTTTGTC+CGG | 0.334182 | 1.4:-1939479 | MS.gene90689:CDS |
ACACCAAGTTGATTCGTCTT+TGG | 0.335862 | 1.4:+1941925 | None:intergenic |
TTCTTTGGTTCCTTCTTGGC+AGG | 0.345422 | 1.4:+1938206 | None:intergenic |
TAATCCTGGAATTTCATTTA+CGG | 0.345587 | 1.4:-1937934 | MS.gene90689:CDS |
TCTTGGGCTTTGGCCTCATA+AGG | 0.353348 | 1.4:+1937731 | None:intergenic |
GAAGAAACAGAAGAAGAAAA+AGG | 0.353379 | 1.4:-1938114 | MS.gene90689:CDS |
TGACAACTCCTAAACTTTCC+AGG | 0.353521 | 1.4:+1939440 | None:intergenic |
TTTCCCTTGAAGGTTTGTTT+GGG | 0.354507 | 1.4:+1940857 | None:intergenic |
TTACCAAGCCTGGAAAGTTT+AGG | 0.359051 | 1.4:-1939448 | MS.gene90689:CDS |
ATCTCAGAAAGATTCTTTGA+TGG | 0.362156 | 1.4:-1940606 | MS.gene90689:intron |
AAACCAGACAGTGCCCTCTT+AGG | 0.362568 | 1.4:+1938080 | None:intergenic |
GATCTTCATCACCAACAAAC+TGG | 0.364930 | 1.4:+1940552 | None:intergenic |
AATGAATACCACAATTTGTA+TGG | 0.365076 | 1.4:-1939074 | MS.gene90689:CDS |
ATTTCCTGAATCAATATTCA+TGG | 0.371026 | 1.4:+1937655 | None:intergenic |
GGTTCTCCTACTGATGATTC+TGG | 0.376502 | 1.4:-1938367 | MS.gene90689:CDS |
GATGCTGTTGTTACATTTGA+GGG | 0.383536 | 1.4:-1940381 | MS.gene90689:CDS |
AGTGCCCTCTTAGGTGCATT+TGG | 0.384070 | 1.4:+1938089 | None:intergenic |
TTAGTCTTGATCCTCCTATT+CGG | 0.386509 | 1.4:-1939940 | MS.gene90689:CDS |
TTAGAAGTAGATGCCTTAGA+AGG | 0.388977 | 1.4:+1938176 | None:intergenic |
ATTACCTGCATCACGATATG+AGG | 0.403729 | 1.4:+1939899 | None:intergenic |
CAATATTGCGTGGTTTGTCC+GGG | 0.409384 | 1.4:-1939478 | MS.gene90689:CDS |
GGCGAACCACACTGCTGTAC+TGG | 0.410835 | 1.4:+1940143 | None:intergenic |
GTTGATAAGGCGGACATAAC+GGG | 0.414369 | 1.4:-1941967 | MS.gene90689:CDS |
ATCACCAACAAACTGGGTAT+TGG | 0.417370 | 1.4:+1940559 | None:intergenic |
CAATACATTACCTTGGTGTA+AGG | 0.418775 | 1.4:+1940349 | None:intergenic |
ATTCACTGGTTTCCGTGATC+AGG | 0.421922 | 1.4:-1941875 | MS.gene90689:intron |
AAAGTCTGCCCTTTCCGAAT+AGG | 0.427601 | 1.4:+1939926 | None:intergenic |
ATATTGTGGTAAACACTTCA+TGG | 0.428597 | 1.4:+1939495 | None:intergenic |
GGCCACACCAACAGTTGGTT+GGG | 0.430545 | 1.4:+1938926 | None:intergenic |
CGGTGCCGCCACGGCCGCCG+AGG | 0.437836 | 1.4:+1943217 | None:intergenic |
AGTTCCAATACCCAGTTTGT+TGG | 0.440167 | 1.4:-1940563 | MS.gene90689:CDS |
ACGGACGTGGGAAGAGTACT+TGG | 0.442183 | 1.4:-1937915 | MS.gene90689:CDS |
CTTGGTGTTCAGATCAAAGA+TGG | 0.447302 | 1.4:-1941910 | MS.gene90689:CDS |
TCCTGCCCATGCAGTTCTAA+GGG | 0.450476 | 1.4:-1938975 | MS.gene90689:intron |
TTTGTTCTCGACAAGGATGA+TGG | 0.451598 | 1.4:-1938391 | MS.gene90689:CDS |
GTCTCCCAAACAAACCTTCA+AGG | 0.458044 | 1.4:-1940861 | MS.gene90689:CDS |
ACACCTTCGGAGTAACTGTT+GGG | 0.460966 | 1.4:-1941617 | MS.gene90689:CDS |
AGATGCTGTTGTTACATTTG+AGG | 0.462575 | 1.4:-1940382 | MS.gene90689:CDS |
AATCTAAAGAAAACTAATCC+TGG | 0.464926 | 1.4:-1937948 | MS.gene90689:CDS |
TGAAGATCGCCCTCCTGCTC+AGG | 0.466330 | 1.4:-1940537 | MS.gene90689:intron |
TGGAATTTCATTTACGGACG+TGG | 0.473424 | 1.4:-1937928 | MS.gene90689:CDS |
TGTTGATAAGGCGGACATAA+CGG | 0.474692 | 1.4:-1941968 | MS.gene90689:CDS |
TTATTGGTGCTGCAGAATCC+GGG | 0.475067 | 1.4:-1942054 | MS.gene90689:intron |
TGGGGAGAAGTTGATCTAAA+CGG | 0.476817 | 1.4:-1941564 | MS.gene90689:intron |
TTATGTGGTTGAAAGTGAAT+TGG | 0.478915 | 1.4:-1939773 | MS.gene90689:CDS |
CAAATCAATTGATGTTGATA+AGG | 0.479324 | 1.4:-1941980 | MS.gene90689:CDS |
AACATTACCCTCGGCGGCCG+TGG | 0.480494 | 1.4:-1943225 | MS.gene90689:CDS |
GAATCAATATTCATGGGTTG+AGG | 0.486272 | 1.4:+1937662 | None:intergenic |
ACTCCTAAACTTTCCAGGCT+TGG | 0.487358 | 1.4:+1939445 | None:intergenic |
TGGCCACACCAACAGTTGGT+TGG | 0.488815 | 1.4:+1938925 | None:intergenic |
TTTCATTTCAGGAAATATGC+TGG | 0.489570 | 1.4:-1940931 | MS.gene90689:intron |
ACAGACAAACTCACCTGAGC+AGG | 0.497300 | 1.4:+1940524 | None:intergenic |
AGTTTCTTCCAAAACACCTT+CGG | 0.497818 | 1.4:-1941630 | MS.gene90689:CDS |
CAGATTTGAGTCTGATAAGA+AGG | 0.497842 | 1.4:+1939129 | None:intergenic |
TTTCACGTGGATGACACAAC+TGG | 0.498298 | 1.4:-1940816 | MS.gene90689:CDS |
CACTCTTATTCTTCATGAAG+AGG | 0.498347 | 1.4:-1939327 | MS.gene90689:intron |
GCACCTAAGAGGGCACTGTC+TGG | 0.501489 | 1.4:-1938083 | MS.gene90689:CDS |
AGAAGCAACTTTCTGTTACT+GGG | 0.502319 | 1.4:-1941593 | MS.gene90689:CDS |
GGGTTGTTCTACAAATTCAC+TGG | 0.502970 | 1.4:-1941889 | MS.gene90689:CDS |
AGGATCCAAATGCACCTAAG+AGG | 0.505192 | 1.4:-1938094 | MS.gene90689:CDS |
CTTCCAGAAACCTGCCAAGA+AGG | 0.506566 | 1.4:-1938216 | MS.gene90689:intron |
TGCCAAGAAGGAACCAAAGA+AGG | 0.508120 | 1.4:-1938204 | MS.gene90689:CDS |
TCTATGGCTGATGTTGGTGC+TGG | 0.508943 | 1.4:-1940411 | MS.gene90689:CDS |
TTTCTGATGCGCTCGAGATG+TGG | 0.509278 | 1.4:+1938867 | None:intergenic |
CCTCTGTCTCACCACCACTT+TGG | 0.510686 | 1.4:+1938323 | None:intergenic |
TCATCTTTGAAAGCTGAAGA+TGG | 0.512966 | 1.4:-1939398 | MS.gene90689:CDS |
GGAGGAGAAGGAACCTTATG+AGG | 0.513515 | 1.4:-1937744 | MS.gene90689:CDS |
AATATGCTGGCTTTCATGGT+TGG | 0.513596 | 1.4:-1940918 | MS.gene90689:CDS |
ACGTCCGTAAATGAAATTCC+AGG | 0.513793 | 1.4:+1937930 | None:intergenic |
CAAGTTGGAGCTGTCTTACA+AGG | 0.514183 | 1.4:-1939713 | MS.gene90689:intron |
GTACCCTCATATCGTGATGC+AGG | 0.515876 | 1.4:-1939903 | MS.gene90689:intron |
ACAAACTGGGTATTGGAACT+TGG | 0.516545 | 1.4:+1940566 | None:intergenic |
TTTCCTGAATCAATATTCAT+GGG | 0.520202 | 1.4:+1937656 | None:intergenic |
GGGTATTGGAACTTGGTACA+TGG | 0.520299 | 1.4:+1940573 | None:intergenic |
GTAGTTTGAAACTGATTATG+TGG | 0.523537 | 1.4:-1939788 | MS.gene90689:intron |
TTCCTACTAGATTGACTATG+TGG | 0.523757 | 1.4:-1939198 | MS.gene90689:intron |
ATTACCCTCGGCGGCCGTGG+CGG | 0.524515 | 1.4:-1943222 | MS.gene90689:CDS |
CTCAAAGTACAAAGACAAGT+TGG | 0.526767 | 1.4:-1939728 | MS.gene90689:CDS |
ACCAACTGTTGGTGTGGCCA+AGG | 0.529642 | 1.4:-1938922 | MS.gene90689:CDS |
CGGACATAACGGGCGTAACA+TGG | 0.530617 | 1.4:-1941957 | MS.gene90689:CDS |
AATGAATCTGACAGTGCCTA+AGG | 0.531097 | 1.4:-1937635 | None:intergenic |
ATGGCTGATGTTGGTGCTGG+AGG | 0.532027 | 1.4:-1940408 | MS.gene90689:CDS |
TGATAAAACCATACAAATTG+TGG | 0.532500 | 1.4:+1939066 | None:intergenic |
TTGATCCTCCTATTCGGAAA+GGG | 0.536206 | 1.4:-1939934 | MS.gene90689:CDS |
AAGTTTAGGAGTTGTCAAGA+TGG | 0.538410 | 1.4:-1939434 | MS.gene90689:CDS |
CTCTTCAACAACATTACCCT+CGG | 0.540205 | 1.4:-1943234 | MS.gene90689:CDS |
GGTGCCGCCACGGCCGCCGA+GGG | 0.543217 | 1.4:+1943218 | None:intergenic |
GAATTTGAGCGACATGCTGC+TGG | 0.545421 | 1.4:-1939176 | MS.gene90689:CDS |
AACACCTTCGGAGTAACTGT+TGG | 0.545941 | 1.4:-1941618 | MS.gene90689:CDS |
AATATTGCGTGGTTTGTCCG+GGG | 0.548849 | 1.4:-1939477 | MS.gene90689:CDS |
ATCTTCATCACCAACAAACT+GGG | 0.552179 | 1.4:+1940553 | None:intergenic |
AGGCTTGGTAACTTTGCCCC+CGG | 0.553156 | 1.4:+1939460 | None:intergenic |
GAAAGAAGAAGCTCTTCTCA+AGG | 0.556630 | 1.4:+1939363 | None:intergenic |
GGATCCAAATGCACCTAAGA+GGG | 0.559964 | 1.4:-1938093 | MS.gene90689:CDS |
AAAGAAGAAGCTCTTCTCAA+GGG | 0.564045 | 1.4:+1939364 | None:intergenic |
GTCTGCCCTTTCCGAATAGG+AGG | 0.565917 | 1.4:+1939929 | None:intergenic |
GTTCCAAAGACGAATCAACT+TGG | 0.567452 | 1.4:-1941928 | MS.gene90689:CDS |
GACAAACTCACCTGAGCAGG+AGG | 0.567937 | 1.4:+1940527 | None:intergenic |
TGACACAACTGGAGCAAATG+AGG | 0.569007 | 1.4:-1940805 | MS.gene90689:intron |
ACCTTGGCCACACCAACAGT+TGG | 0.570641 | 1.4:+1938921 | None:intergenic |
GAGCGCATCAGAAATGAAGC+TGG | 0.571748 | 1.4:-1938858 | MS.gene90689:CDS |
ATCATCATTCTCAAGCACCT+TGG | 0.580790 | 1.4:+1938905 | None:intergenic |
CTTGATCCTCCTATTCGGAA+AGG | 0.581438 | 1.4:-1939935 | MS.gene90689:CDS |
TCAATACACAGCGGAGGAGA+AGG | 0.582588 | 1.4:-1937756 | MS.gene90689:intron |
AACGGGCGTAACATGGATGA+AGG | 0.587136 | 1.4:-1941950 | MS.gene90689:CDS |
CTCTTCATGAAGAATAAGAG+TGG | 0.590015 | 1.4:+1939328 | None:intergenic |
TCTGTTACTGGGCGCAATTG+GGG | 0.591812 | 1.4:-1941582 | MS.gene90689:CDS |
TCTCCCAAACAAACCTTCAA+GGG | 0.596624 | 1.4:-1940860 | MS.gene90689:CDS |
ATCAATTGATGTTGATAAGG+CGG | 0.597783 | 1.4:-1941977 | MS.gene90689:CDS |
CGCATCAGAAATGAAGCTGG+TGG | 0.603857 | 1.4:-1938855 | MS.gene90689:CDS |
GGACAAACCACGCAATATTG+TGG | 0.607048 | 1.4:+1939481 | None:intergenic |
TTATGGAAGAGACAGGGAGG+TGG | 0.608219 | 1.4:-1942003 | MS.gene90689:CDS |
TTTCTCGCCACCATGACTGA+CGG | 0.609508 | 1.4:-1943261 | None:intergenic |
AAGAAGAAGCTCTTCTCAAG+GGG | 0.618644 | 1.4:+1939365 | None:intergenic |
GGAATTTCATTTACGGACGT+GGG | 0.619820 | 1.4:-1937927 | MS.gene90689:CDS |
TCAAAAGATGCTGATGACGA+AGG | 0.621100 | 1.4:-1938146 | MS.gene90689:CDS |
GAGAGCTTACGGTGCCGCCA+CGG | 0.622395 | 1.4:+1943208 | None:intergenic |
TTGGTGTTCAGATCAAAGAT+GGG | 0.623826 | 1.4:-1941909 | MS.gene90689:CDS |
CTCCCCAACAGTTACTCCGA+AGG | 0.624094 | 1.4:+1941614 | None:intergenic |
TCATGAAGAATAAGAGTGGG+AGG | 0.627094 | 1.4:+1939332 | None:intergenic |
TTTGAGCGACATGCTGCTGG+TGG | 0.628138 | 1.4:-1939173 | MS.gene90689:CDS |
ATATTGCGTGGTTTGTCCGG+GGG | 0.628584 | 1.4:-1939476 | MS.gene90689:CDS |
GACTCTGATGCTAGCCAAAG+TGG | 0.628895 | 1.4:-1938337 | MS.gene90689:CDS |
TGCCCAACCAACTGTTGGTG+TGG | 0.630617 | 1.4:-1938928 | MS.gene90689:CDS |
GTTCTCGACAAGGATGATGG+AGG | 0.634483 | 1.4:-1938388 | MS.gene90689:CDS |
CCAAAGTGGTGGTGAGACAG+AGG | 0.637450 | 1.4:-1938323 | MS.gene90689:intron |
TATTGGTGCTGCAGAATCCG+GGG | 0.638125 | 1.4:-1942053 | MS.gene90689:intron |
CTAATAATGACGAAGGTATG+CGG | 0.638553 | 1.4:+1939959 | None:intergenic |
GACGGAGAACTACCTGATCA+CGG | 0.641013 | 1.4:+1941863 | None:intergenic |
ATCAAGACTAATAATGACGA+AGG | 0.641692 | 1.4:+1939952 | None:intergenic |
TCTTCATGAAGAATAAGAGT+GGG | 0.642579 | 1.4:+1939329 | None:intergenic |
ATAATGTCTATGGCTGATGT+TGG | 0.645958 | 1.4:-1940417 | MS.gene90689:CDS |
GCGCTCGAGATGTGGATCGA+CGG | 0.648144 | 1.4:+1938875 | None:intergenic |
GTGTTTACCACAATATTGCG+TGG | 0.650738 | 1.4:-1939488 | MS.gene90689:CDS |
GAAGAGATGACCGTCAGTCA+TGG | 0.651094 | 1.4:+1943251 | None:intergenic |
GCTGATGCCCAACCAACTGT+TGG | 0.651825 | 1.4:-1938933 | MS.gene90689:CDS |
TTACCTGCATCACGATATGA+GGG | 0.656286 | 1.4:+1939900 | None:intergenic |
AAAGATGCTGATGACGAAGG+AGG | 0.658535 | 1.4:-1938143 | MS.gene90689:CDS |
TCTGCACCAGAATCATCAGT+AGG | 0.661015 | 1.4:+1938361 | None:intergenic |
CGTTACAAGGATGAGATGAG+TGG | 0.662650 | 1.4:-1937698 | MS.gene90689:CDS |
CACCTTCGGAGTAACTGTTG+GGG | 0.674663 | 1.4:-1941616 | MS.gene90689:CDS |
ACAAACTCACCTGAGCAGGA+GGG | 0.692093 | 1.4:+1940528 | None:intergenic |
CAAAATCCAGTACAGCAGTG+TGG | 0.693832 | 1.4:-1940149 | MS.gene90689:CDS |
TGGTGGAGATGAAAGTGACG+AGG | 0.704697 | 1.4:-1938838 | MS.gene90689:CDS |
TGTGATGTTGGAGTTTCACG+TGG | 0.716384 | 1.4:-1940829 | MS.gene90689:CDS |
TCTGATGCTAGCCAAAGTGG+TGG | 0.752107 | 1.4:-1938334 | MS.gene90689:CDS |
TGGAGATGAAAGTGACGAGG+AGG | 0.754949 | 1.4:-1938835 | MS.gene90689:intron |
TTCAACAACATTACCCTCGG+CGG | 0.763342 | 1.4:-1943231 | MS.gene90689:CDS |
GTATTGCAATCCTTACACCA+AGG | 0.765044 | 1.4:-1940359 | MS.gene90689:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATTAGAGTTTTTTTTTTA+TGG | - | chr1.4:1941656-1941675 | MS.gene90689:intron | 10.0% |
!! | AAAATAATAATGAAAAGATG+AGG | - | chr1.4:1938736-1938755 | MS.gene90689:intron | 15.0% |
!! | AGTAGATTTATTGAAAAAAA+TGG | - | chr1.4:1937962-1937981 | MS.gene90689:intron | 15.0% |
!! | GTAGATTTATTGAAAAAAAT+GGG | - | chr1.4:1937963-1937982 | MS.gene90689:intron | 15.0% |
!! | TACACTTATATTTGTATTAT+TGG | - | chr1.4:1938816-1938835 | MS.gene90689:intron | 15.0% |
!! | TATATTAAAAACAAAAAGCA+AGG | + | chr1.4:1940800-1940819 | None:intergenic | 15.0% |
!!! | AAATATCTTTGAAAATAGTA+GGG | + | chr1.4:1939520-1939539 | None:intergenic | 15.0% |
!!! | GGTATATATATATATAGTTT+TGG | - | chr1.4:1940102-1940121 | MS.gene90689:intron | 15.0% |
!!! | TAAATATCTTTGAAAATAGT+AGG | + | chr1.4:1939521-1939540 | None:intergenic | 15.0% |
!!! | TGCTTTTGTATATATTAAAT+TGG | - | chr1.4:1942447-1942466 | MS.gene90689:intron | 15.0% |
!! | AAAAAGGAATTACAAAAGTT+AGG | + | chr1.4:1937790-1937809 | None:intergenic | 20.0% |
!! | AAAAGGAATTACAAAAGTTA+GGG | + | chr1.4:1937789-1937808 | None:intergenic | 20.0% |
!! | AAACATGTAAATACATATTC+AGG | + | chr1.4:1939051-1939070 | None:intergenic | 20.0% |
!! | AAATAGAACCAACTTAAAAA+TGG | + | chr1.4:1939649-1939668 | None:intergenic | 20.0% |
!! | AAATTAGGGATTAACAAAAA+TGG | + | chr1.4:1937862-1937881 | None:intergenic | 20.0% |
!! | AACATGTAAATACATATTCA+GGG | + | chr1.4:1939050-1939069 | None:intergenic | 20.0% |
!! | AATAGAACCAACTTAAAAAT+GGG | + | chr1.4:1939648-1939667 | None:intergenic | 20.0% |
!! | AATATAATAGGCTAAGATTA+TGG | + | chr1.4:1943072-1943091 | None:intergenic | 20.0% |
!! | AATTCACTATTCAATAATCA+GGG | - | chr1.4:1941362-1941381 | MS.gene90689:intron | 20.0% |
!! | ATCAAACACATAAATTTACT+CGG | + | chr1.4:1939421-1939440 | None:intergenic | 20.0% |
!! | ATTCATTTCTCTGAATATTT+CGG | + | chr1.4:1941799-1941818 | None:intergenic | 20.0% |
!! | CACAAACACAAAAATATAAT+AGG | + | chr1.4:1943084-1943103 | None:intergenic | 20.0% |
!! | GAAATGAAAATAGAAACATA+AGG | + | chr1.4:1939944-1939963 | None:intergenic | 20.0% |
!! | TAAAAATGGGTACAAAAAAA+CGG | + | chr1.4:1939635-1939654 | None:intergenic | 20.0% |
!! | TAATTCACTATTCAATAATC+AGG | - | chr1.4:1941361-1941380 | MS.gene90689:intron | 20.0% |
!!! | AAGTTGGTTCTATTTTTTTT+GGG | - | chr1.4:1939654-1939673 | MS.gene90689:intron | 20.0% |
!!! | ATAAGTTTTGTAAGACTATT+TGG | + | chr1.4:1938613-1938632 | None:intergenic | 20.0% |
!!! | CAAATATGTGTGATAAATTT+TGG | + | chr1.4:1941865-1941884 | None:intergenic | 20.0% |
!!! | TAAGTTGGTTCTATTTTTTT+TGG | - | chr1.4:1939653-1939672 | MS.gene90689:intron | 20.0% |
!!! | TATGTTTCTATTTTCATTTC+AGG | - | chr1.4:1939944-1939963 | MS.gene90689:CDS | 20.0% |
!!! | TGACATTTGTAAAATCATTT+TGG | - | chr1.4:1940425-1940444 | MS.gene90689:CDS | 20.0% |
!!! | TGTAAAATCATTTTGGTATT+AGG | - | chr1.4:1940432-1940451 | MS.gene90689:CDS | 20.0% |
! | AAAAACAAAAAGCAAGGATT+AGG | + | chr1.4:1940794-1940813 | None:intergenic | 25.0% |
! | AAACCTTAGGAAGTAAAAAT+AGG | + | chr1.4:1940767-1940786 | None:intergenic | 25.0% |
! | AAATCATAAACCCTAATACT+AGG | - | chr1.4:1937812-1937831 | MS.gene90689:intron | 25.0% |
! | AATCATAAACCCTAATACTA+GGG | - | chr1.4:1937813-1937832 | MS.gene90689:intron | 25.0% |
! | AATCTAAAGAAAACTAATCC+TGG | - | chr1.4:1942938-1942957 | MS.gene90689:intron | 25.0% |
! | AATGAATACCACAATTTGTA+TGG | - | chr1.4:1941812-1941831 | MS.gene90689:intron | 25.0% |
! | ACATGTAAATACATATTCAG+GGG | + | chr1.4:1939049-1939068 | None:intergenic | 25.0% |
! | AGAAAAATGGAAAAATCTGT+CGG | - | chr1.4:1942994-1943013 | MS.gene90689:intron | 25.0% |
! | ATCTTGTTACAGCAAATTAT+AGG | - | chr1.4:1940398-1940417 | MS.gene90689:CDS | 25.0% |
! | ATGTTTGACATCGTTTATAA+TGG | - | chr1.4:1939448-1939467 | MS.gene90689:CDS | 25.0% |
! | ATTCACTATTCAATAATCAG+GGG | - | chr1.4:1941363-1941382 | MS.gene90689:intron | 25.0% |
! | ATTTCCTGAATCAATATTCA+TGG | + | chr1.4:1943234-1943253 | None:intergenic | 25.0% |
! | CAAATCAATTGATGTTGATA+AGG | - | chr1.4:1938906-1938925 | MS.gene90689:CDS | 25.0% |
! | CAGATAAAAATATATTCTGG+AGG | - | chr1.4:1938856-1938875 | MS.gene90689:CDS | 25.0% |
! | GAAAAAGGAATTCAATTGTT+TGG | - | chr1.4:1939079-1939098 | MS.gene90689:CDS | 25.0% |
! | GAGTAAATTTATGTGTTTGA+TGG | - | chr1.4:1939420-1939439 | MS.gene90689:CDS | 25.0% |
! | TAATCCTGGAATTTCATTTA+CGG | - | chr1.4:1942952-1942971 | MS.gene90689:intron | 25.0% |
! | TAGATATATTCAAATGAGGT+TGG | + | chr1.4:1942194-1942213 | None:intergenic | 25.0% |
! | TCTAATGAATTGATACAGTT+TGG | - | chr1.4:1940129-1940148 | MS.gene90689:CDS | 25.0% |
! | TGAAAACAACTTATGAACAA+TGG | - | chr1.4:1938318-1938337 | MS.gene90689:intron | 25.0% |
! | TGATAAAACCATACAAATTG+TGG | + | chr1.4:1941823-1941842 | None:intergenic | 25.0% |
! | TGCTTAGATATATTCAAATG+AGG | + | chr1.4:1942198-1942217 | None:intergenic | 25.0% |
! | TGTTCTAATTTAAGTGATTG+AGG | - | chr1.4:1942149-1942168 | MS.gene90689:intron | 25.0% |
! | TTCCTTATAAAAAGAAACAC+CGG | - | chr1.4:1939598-1939617 | MS.gene90689:intron | 25.0% |
! | TTTCCTGAATCAATATTCAT+GGG | + | chr1.4:1943233-1943252 | None:intergenic | 25.0% |
!! | AAATACCAAATGTTAGTTTC+TGG | - | chr1.4:1941611-1941630 | MS.gene90689:CDS | 25.0% |
!! | AATCACACTTTACACATTTT+TGG | + | chr1.4:1938051-1938070 | None:intergenic | 25.0% |
!! | AATTACCCTGAATTTTACAA+AGG | + | chr1.4:1939579-1939598 | None:intergenic | 25.0% |
!! | AGATCAATCTTTTTCTTGAA+AGG | + | chr1.4:1940630-1940649 | None:intergenic | 25.0% |
!! | GAAACTAACATTTGGTATTT+TGG | + | chr1.4:1941611-1941630 | None:intergenic | 25.0% |
!!! | AATTACACTTGTCATTTTTG+CGG | - | chr1.4:1940691-1940710 | MS.gene90689:intron | 25.0% |
!!! | ACAATTTGTATGGTTTTATC+AGG | - | chr1.4:1941822-1941841 | MS.gene90689:intron | 25.0% |
!!! | ACGTTTTATACTTATTTTGC+AGG | - | chr1.4:1939216-1939235 | MS.gene90689:intron | 25.0% |
!!! | AGGGTTTATGATTTTGAAAA+AGG | + | chr1.4:1937806-1937825 | None:intergenic | 25.0% |
!!! | CATGTTTTTGATGTTGAAAA+AGG | - | chr1.4:1939064-1939083 | MS.gene90689:intron | 25.0% |
!!! | CCATAGACATTATTTTATCA+CGG | + | chr1.4:1940462-1940481 | None:intergenic | 25.0% |
!!! | TATATTCTGGAGGAATTTTA+TGG | - | chr1.4:1938866-1938885 | MS.gene90689:CDS | 25.0% |
!!! | TGACTAAACTGTTGATAATT+GGG | - | chr1.4:1941199-1941218 | MS.gene90689:intron | 25.0% |
!!! | TTGACTAAACTGTTGATAAT+TGG | - | chr1.4:1941198-1941217 | MS.gene90689:intron | 25.0% |
!!! | TTTTGGAATTGCGTTTTTTA+TGG | - | chr1.4:1940236-1940255 | MS.gene90689:intron | 25.0% |
!!! | TTTTGTACCCATTTTTAAGT+TGG | - | chr1.4:1939638-1939657 | MS.gene90689:intron | 25.0% |
AAAGTGAGAAGTTGTTAAGA+TGG | - | chr1.4:1939746-1939765 | MS.gene90689:CDS | 30.0% | |
AAATTTACTCGGAGTATAGT+AGG | + | chr1.4:1939410-1939429 | None:intergenic | 30.0% | |
AAGTTGTTAAGATGGAAATG+TGG | - | chr1.4:1939754-1939773 | MS.gene90689:CDS | 30.0% | |
AATTGGTGTAAAATGTCTAC+AGG | - | chr1.4:1942464-1942483 | MS.gene90689:intron | 30.0% | |
ACAAATTGCACACAATAACT+AGG | + | chr1.4:1938106-1938125 | None:intergenic | 30.0% | |
ACCAAAGATTTAAAGAGTAG+AGG | + | chr1.4:1942624-1942643 | None:intergenic | 30.0% | |
ACCTCTACTCTTTAAATCTT+TGG | - | chr1.4:1942620-1942639 | MS.gene90689:intron | 30.0% | |
AGGAATTCAATTGTTTGGTT+TGG | - | chr1.4:1939084-1939103 | MS.gene90689:CDS | 30.0% | |
AGTTAGGGTTATTCAAAAAG+AGG | + | chr1.4:1937774-1937793 | None:intergenic | 30.0% | |
AGTTGTTAAGATGGAAATGT+GGG | - | chr1.4:1939755-1939774 | MS.gene90689:CDS | 30.0% | |
ATAAGCTGATTATCCAAACA+GGG | + | chr1.4:1938152-1938171 | None:intergenic | 30.0% | |
ATAGAGAAAACCCTAGTATT+AGG | + | chr1.4:1937826-1937845 | None:intergenic | 30.0% | |
ATAGTCAATCTAGTAGGAAA+TGG | + | chr1.4:1941687-1941706 | None:intergenic | 30.0% | |
ATATTGTGGTAAACACTTCA+TGG | + | chr1.4:1941394-1941413 | None:intergenic | 30.0% | |
ATCAAAAAGATCCACCATAA+AGG | + | chr1.4:1939875-1939894 | None:intergenic | 30.0% | |
ATCAACCAGAAACTAACATT+TGG | + | chr1.4:1941619-1941638 | None:intergenic | 30.0% | |
ATCAAGACTAATAATGACGA+AGG | + | chr1.4:1940937-1940956 | None:intergenic | 30.0% | |
ATCTCAGAAAGATTCTTTGA+TGG | - | chr1.4:1940280-1940299 | MS.gene90689:intron | 30.0% | |
ATGCAAAGAAACAGAAAACT+TGG | + | chr1.4:1943108-1943127 | None:intergenic | 30.0% | |
ATGGAACTGCAATGAAATAA+TGG | + | chr1.4:1943033-1943052 | None:intergenic | 30.0% | |
CAAATCATCAACGTTTAGAT+TGG | + | chr1.4:1939154-1939173 | None:intergenic | 30.0% | |
CACTCAAAATACAAACTGAA+TGG | + | chr1.4:1939551-1939570 | None:intergenic | 30.0% | |
CATGTAAATACATATTCAGG+GGG | + | chr1.4:1939048-1939067 | None:intergenic | 30.0% | |
CCGTGATAAAATAATGTCTA+TGG | - | chr1.4:1940459-1940478 | MS.gene90689:intron | 30.0% | |
GAAAAATGGAAAAATCTGTC+GGG | - | chr1.4:1942995-1943014 | MS.gene90689:intron | 30.0% | |
GAAGAAACAGAAGAAGAAAA+AGG | - | chr1.4:1942772-1942791 | MS.gene90689:intron | 30.0% | |
GCTGTTTATGTATGCTATAT+TGG | - | chr1.4:1938276-1938295 | MS.gene90689:intron | 30.0% | |
GGGCAGATAAAAATATATTC+TGG | - | chr1.4:1938853-1938872 | MS.gene90689:CDS | 30.0% | |
GGTTATTCAAAAAGAGGAAA+TGG | + | chr1.4:1937768-1937787 | None:intergenic | 30.0% | |
TAAGCGCATATCATGATAAA+TGG | + | chr1.4:1938193-1938212 | None:intergenic | 30.0% | |
TAAGTATAAAACGTCAACAC+AGG | + | chr1.4:1939210-1939229 | None:intergenic | 30.0% | |
TAGAGAAAACCCTAGTATTA+GGG | + | chr1.4:1937825-1937844 | None:intergenic | 30.0% | |
TCAAAAAGATCCACCATAAA+GGG | + | chr1.4:1939874-1939893 | None:intergenic | 30.0% | |
TCCTTATAAAAAGAAACACC+GGG | - | chr1.4:1939599-1939618 | MS.gene90689:intron | 30.0% | |
TCTTCATGAAGAATAAGAGT+GGG | + | chr1.4:1941560-1941579 | None:intergenic | 30.0% | |
TGTTGTACAATACATTACCT+TGG | + | chr1.4:1940547-1940566 | None:intergenic | 30.0% | |
TTATGTGGTTGAAAGTGAAT+TGG | - | chr1.4:1941113-1941132 | MS.gene90689:intron | 30.0% | |
TTTCATTTCAGGAAATATGC+TGG | - | chr1.4:1939955-1939974 | MS.gene90689:CDS | 30.0% | |
! | AAAACAATTCAGCGTTTTGT+GGG | + | chr1.4:1938355-1938374 | None:intergenic | 30.0% |
! | AAAGCATCAATTTACATGTG+TGG | + | chr1.4:1940836-1940855 | None:intergenic | 30.0% |
! | AAATTTGCTTTATTGTGCAG+AGG | - | chr1.4:1940654-1940673 | MS.gene90689:intron | 30.0% |
! | AGTGTTTTCATTAGCTATCT+TGG | - | chr1.4:1938521-1938540 | MS.gene90689:intron | 30.0% |
! | ATCAACTAACGTAAGTTTTG+TGG | + | chr1.4:1938469-1938488 | None:intergenic | 30.0% |
! | ATCAATTGATGTTGATAAGG+CGG | - | chr1.4:1938909-1938928 | MS.gene90689:CDS | 30.0% |
! | CTTTATTCATGAGTAGCTTT+TGG | - | chr1.4:1942118-1942137 | MS.gene90689:intron | 30.0% |
! | GTAGTTTGAAACTGATTATG+TGG | - | chr1.4:1941098-1941117 | MS.gene90689:intron | 30.0% |
! | GTCTACTTACATTTCAGTTT+TGG | - | chr1.4:1942249-1942268 | MS.gene90689:intron | 30.0% |
! | TGTAAATTGATGCTTTTCTC+TGG | - | chr1.4:1940840-1940859 | MS.gene90689:CDS | 30.0% |
! | TTGGTCAAAGTGTTAATCAA+AGG | + | chr1.4:1939135-1939154 | None:intergenic | 30.0% |
! | TTTCATGTTCTTTTCTCAGA+TGG | - | chr1.4:1942826-1942845 | MS.gene90689:intron | 30.0% |
!! | AAACGTTGATGATTTGGATT+TGG | - | chr1.4:1939158-1939177 | MS.gene90689:CDS | 30.0% |
!! | AGAAGATAAAAAGCGTTACA+AGG | - | chr1.4:1943175-1943194 | MS.gene90689:intron | 30.0% |
!! | CAATCTAAACGTTGATGATT+TGG | - | chr1.4:1939152-1939171 | MS.gene90689:CDS | 30.0% |
!! | GAATATATTTTTATCTGCCC+CGG | + | chr1.4:1938853-1938872 | None:intergenic | 30.0% |
!! | GTAACGCTTTTTATCTTCTT+GGG | + | chr1.4:1943174-1943193 | None:intergenic | 30.0% |
!! | TCAACTAACGTAAGTTTTGT+GGG | + | chr1.4:1938468-1938487 | None:intergenic | 30.0% |
!! | TGTAACGCTTTTTATCTTCT+TGG | + | chr1.4:1943175-1943194 | None:intergenic | 30.0% |
!!! | AAATGTGGGTTCTTTTTTTC+AGG | - | chr1.4:1939769-1939788 | MS.gene90689:CDS | 30.0% |
!!! | AAGGGCATATTTTAGTTGAT+TGG | - | chr1.4:1941276-1941295 | MS.gene90689:intron | 30.0% |
!!! | AATGTGGGTTCTTTTTTTCA+GGG | - | chr1.4:1939770-1939789 | MS.gene90689:CDS | 30.0% |
!!! | GCATATTTTAGTTGATTGGT+TGG | - | chr1.4:1941280-1941299 | MS.gene90689:intron | 30.0% |
!!! | TTTATGGTGGATCTTTTTGA+TGG | - | chr1.4:1939874-1939893 | MS.gene90689:intron | 30.0% |
AAAGAAGAAGCTCTTCTCAA+GGG | + | chr1.4:1941525-1941544 | None:intergenic | 35.0% | |
AAAGAAGGATTTGCCTTCTA+AGG | - | chr1.4:1942697-1942716 | MS.gene90689:intron | 35.0% | |
AAATGCAGTCTTTCCCTTTA+TGG | - | chr1.4:1939858-1939877 | MS.gene90689:intron | 35.0% | |
AAGTTTAGGAGTTGTCAAGA+TGG | - | chr1.4:1941452-1941471 | MS.gene90689:intron | 35.0% | |
AGAAGCAACTTTCTGTTACT+GGG | - | chr1.4:1939293-1939312 | MS.gene90689:intron | 35.0% | |
AGATGCTGTTGTTACATTTG+AGG | - | chr1.4:1940504-1940523 | MS.gene90689:intron | 35.0% | |
AGATTTAAAGAGTAGAGGTG+AGG | + | chr1.4:1942619-1942638 | None:intergenic | 35.0% | |
AGGATTAGGAGATAAACCTT+AGG | + | chr1.4:1940780-1940799 | None:intergenic | 35.0% | |
AGGGAAAAATGATGTGATGT+TGG | - | chr1.4:1940045-1940064 | MS.gene90689:intron | 35.0% | |
AGTTTCTTCCAAAACACCTT+CGG | - | chr1.4:1939256-1939275 | MS.gene90689:intron | 35.0% | |
ATAATGTCTATGGCTGATGT+TGG | - | chr1.4:1940469-1940488 | MS.gene90689:intron | 35.0% | |
ATACTATTCAAGCCCAAGTT+TGG | + | chr1.4:1940192-1940211 | None:intergenic | 35.0% | |
ATCTTCATCACCAACAAACT+GGG | + | chr1.4:1940336-1940355 | None:intergenic | 35.0% | |
CAAGTAGTCAAGTACAGATT+AGG | + | chr1.4:1942079-1942098 | None:intergenic | 35.0% | |
CACTCTTATTCTTCATGAAG+AGG | - | chr1.4:1941559-1941578 | MS.gene90689:intron | 35.0% | |
CAGATTTGAGTCTGATAAGA+AGG | + | chr1.4:1941760-1941779 | None:intergenic | 35.0% | |
CAGTTTCAAACTACACAGAA+AGG | + | chr1.4:1941092-1941111 | None:intergenic | 35.0% | |
CTCAAAGTACAAAGACAAGT+TGG | - | chr1.4:1941158-1941177 | MS.gene90689:intron | 35.0% | |
CTCTTCATGAAGAATAAGAG+TGG | + | chr1.4:1941561-1941580 | None:intergenic | 35.0% | |
GATAAGCTGATTATCCAAAC+AGG | + | chr1.4:1938153-1938172 | None:intergenic | 35.0% | |
GATGCTGTTGTTACATTTGA+GGG | - | chr1.4:1940505-1940524 | MS.gene90689:intron | 35.0% | |
GCTACTCATGAATAAAGAAG+AGG | + | chr1.4:1942115-1942134 | None:intergenic | 35.0% | |
TAAATACATATTCAGGGGGA+CGG | + | chr1.4:1939044-1939063 | None:intergenic | 35.0% | |
TAAGCTGATTATCCAAACAG+GGG | + | chr1.4:1938151-1938170 | None:intergenic | 35.0% | |
TATTGTAGGCTGCAGTTTAT+AGG | - | chr1.4:1940209-1940228 | MS.gene90689:CDS | 35.0% | |
TCAAAAAGAGGAAATGGTGA+AGG | + | chr1.4:1937762-1937781 | None:intergenic | 35.0% | |
TCATTAGCTGTTATGTGTCA+AGG | - | chr1.4:1938681-1938700 | MS.gene90689:intron | 35.0% | |
TGAGGAAAGAAGATCGAAAA+TGG | + | chr1.4:1937737-1937756 | None:intergenic | 35.0% | |
TGATGTAACAACCAGATTGA+AGG | + | chr1.4:1939715-1939734 | None:intergenic | 35.0% | |
TGCTGTACATATTAGTGATG+TGG | - | chr1.4:1942867-1942886 | MS.gene90689:intron | 35.0% | |
TTAGAAGGCAAATCCTTCTT+TGG | + | chr1.4:1942698-1942717 | None:intergenic | 35.0% | |
TTAGAAGTAGATGCCTTAGA+AGG | + | chr1.4:1942713-1942732 | None:intergenic | 35.0% | |
TTCCACATAGTCAATCTAGT+AGG | + | chr1.4:1941693-1941712 | None:intergenic | 35.0% | |
TTCCTACTAGATTGACTATG+TGG | - | chr1.4:1941688-1941707 | MS.gene90689:intron | 35.0% | |
TTGGGCTTGAATAGTATTGT+AGG | - | chr1.4:1940195-1940214 | MS.gene90689:CDS | 35.0% | |
TTTGCATGTTCAATACACAG+CGG | - | chr1.4:1943121-1943140 | MS.gene90689:intron | 35.0% | |
! | ACAATAACTAGGTTTGAAGC+TGG | + | chr1.4:1938095-1938114 | None:intergenic | 35.0% |
! | AGGAATTTTATGGAAGAGAC+AGG | - | chr1.4:1938876-1938895 | MS.gene90689:CDS | 35.0% |
! | CAATACATTACCTTGGTGTA+AGG | + | chr1.4:1940540-1940559 | None:intergenic | 35.0% |
! | CAGGTAATGTTTTACTTCGT+TGG | - | chr1.4:1941002-1941021 | MS.gene90689:intron | 35.0% |
! | CTAATAATGACGAAGGTATG+CGG | + | chr1.4:1940930-1940949 | None:intergenic | 35.0% |
! | CTTTTTATCTTCTTGGGCTT+TGG | + | chr1.4:1943168-1943187 | None:intergenic | 35.0% |
! | GAAAACAATTCAGCGTTTTG+TGG | + | chr1.4:1938356-1938375 | None:intergenic | 35.0% |
! | GAATCAATATTCATGGGTTG+AGG | + | chr1.4:1943227-1943246 | None:intergenic | 35.0% |
! | GGAATTTTATGGAAGAGACA+GGG | - | chr1.4:1938877-1938896 | MS.gene90689:CDS | 35.0% |
! | TACCCTGAATTTTACAAAGG+CGG | + | chr1.4:1939576-1939595 | None:intergenic | 35.0% |
! | TCATCTTTGAAAGCTGAAGA+TGG | - | chr1.4:1941488-1941507 | MS.gene90689:intron | 35.0% |
! | TGCAGTTTATAGGCTCATTT+TGG | - | chr1.4:1940219-1940238 | MS.gene90689:intron | 35.0% |
! | TGGTCATCATTAAGGTGTTA+GGG | + | chr1.4:1942649-1942668 | None:intergenic | 35.0% |
! | TTCAGATTTTGTTCTCGACA+AGG | - | chr1.4:1942488-1942507 | MS.gene90689:intron | 35.0% |
! | TTGGTCATCATTAAGGTGTT+AGG | + | chr1.4:1942650-1942669 | None:intergenic | 35.0% |
! | TTGGTGTTCAGATCAAAGAT+GGG | - | chr1.4:1938977-1938996 | MS.gene90689:intron | 35.0% |
! | TTTCCCTTGAAGGTTTGTTT+GGG | + | chr1.4:1940032-1940051 | None:intergenic | 35.0% |
!! | AGCTGCTTTGGAAATGAAAA+AGG | - | chr1.4:1941257-1941276 | MS.gene90689:intron | 35.0% |
!! | CAACCCATGAATATTGATTC+AGG | - | chr1.4:1943227-1943246 | MS.gene90689:CDS | 35.0% |
!! | CTGACTTGACTGCTTTTATA+CGG | - | chr1.4:1939899-1939918 | MS.gene90689:intron | 35.0% |
!! | GAAGAGTACTTGGAGAAAAA+TGG | - | chr1.4:1942981-1943000 | MS.gene90689:intron | 35.0% |
!! | GCTGCTTTGGAAATGAAAAA+GGG | - | chr1.4:1941258-1941277 | MS.gene90689:intron | 35.0% |
!! | TCACATCATTTTTCCCTTGA+AGG | + | chr1.4:1940042-1940061 | None:intergenic | 35.0% |
!! | TTAGTCTTGATCCTCCTATT+CGG | - | chr1.4:1940946-1940965 | MS.gene90689:intron | 35.0% |
!! | TTCAATTGTTTGGTTTGGCT+TGG | - | chr1.4:1939089-1939108 | MS.gene90689:CDS | 35.0% |
!! | TTTTCCCTTGAAGGTTTGTT+TGG | + | chr1.4:1940033-1940052 | None:intergenic | 35.0% |
!!! | TCGCCTATTTTTACTTCCTA+AGG | - | chr1.4:1940761-1940780 | MS.gene90689:intron | 35.0% |
AAACAGGGGCTAATACTAGA+TGG | + | chr1.4:1938137-1938156 | None:intergenic | 40.0% | |
AAACCTTCCTCATCCAAACT+TGG | - | chr1.4:1940176-1940195 | MS.gene90689:CDS | 40.0% | |
AAAGGGATAGATGGACAAAC+AGG | + | chr1.4:1942320-1942339 | None:intergenic | 40.0% | |
AACAACCAGATTGAAGGTAG+TGG | + | chr1.4:1939709-1939728 | None:intergenic | 40.0% | |
AACCTTCCTCATCCAAACTT+GGG | - | chr1.4:1940177-1940196 | MS.gene90689:CDS | 40.0% | |
AAGAAGAAGCTCTTCTCAAG+GGG | + | chr1.4:1941524-1941543 | None:intergenic | 40.0% | |
ACGTCCGTAAATGAAATTCC+AGG | + | chr1.4:1942959-1942978 | None:intergenic | 40.0% | |
AGAAACATAAGGACATCCAC+TGG | + | chr1.4:1939933-1939952 | None:intergenic | 40.0% | |
AGAATAAGAGTGGGAGGTTT+AGG | + | chr1.4:1941551-1941570 | None:intergenic | 40.0% | |
AGTTCCAATACCCAGTTTGT+TGG | - | chr1.4:1940323-1940342 | MS.gene90689:intron | 40.0% | |
ATCACCAACAAACTGGGTAT+TGG | + | chr1.4:1940330-1940349 | None:intergenic | 40.0% | |
ATCATCATTCTCAAGCACCT+TGG | + | chr1.4:1941984-1942003 | None:intergenic | 40.0% | |
ATCTAGTATTAGCCCCTGTT+TGG | - | chr1.4:1938136-1938155 | MS.gene90689:CDS | 40.0% | |
ATGGAAAAATCTGTCGGGTA+TGG | - | chr1.4:1943000-1943019 | MS.gene90689:intron | 40.0% | |
ATTACCTGCATCACGATATG+AGG | + | chr1.4:1940990-1941009 | None:intergenic | 40.0% | |
CACCGCCTTTGTAAAATTCA+GGG | - | chr1.4:1939571-1939590 | MS.gene90689:intron | 40.0% | |
CTCATTCATGCTTTCTTCTC+TGG | - | chr1.4:1939829-1939848 | MS.gene90689:intron | 40.0% | |
CTCTGTATTGCTTACTGTTG+TGG | - | chr1.4:1942354-1942373 | MS.gene90689:intron | 40.0% | |
CTCTTCAACAACATTACCCT+CGG | - | chr1.4:1937652-1937671 | MS.gene90689:CDS | 40.0% | |
GAAAGAAGAAGCTCTTCTCA+AGG | + | chr1.4:1941526-1941545 | None:intergenic | 40.0% | |
GACAAACTGAAAGGGATAGA+TGG | + | chr1.4:1942329-1942348 | None:intergenic | 40.0% | |
GAGAAGCAACTTTCTGTTAC+TGG | - | chr1.4:1939292-1939311 | MS.gene90689:intron | 40.0% | |
GATCTTCATCACCAACAAAC+TGG | + | chr1.4:1940337-1940356 | None:intergenic | 40.0% | |
GGAATTTCATTTACGGACGT+GGG | - | chr1.4:1942959-1942978 | MS.gene90689:intron | 40.0% | |
GGGTTGTTCTACAAATTCAC+TGG | - | chr1.4:1938997-1939016 | MS.gene90689:intron | 40.0% | |
GTATTGCAATCCTTACACCA+AGG | - | chr1.4:1940527-1940546 | MS.gene90689:intron | 40.0% | |
GTCATATGCGTATGTCTTGT+GGG | - | chr1.4:1942387-1942406 | MS.gene90689:intron | 40.0% | |
GTGTTTACCACAATATTGCG+TGG | - | chr1.4:1941398-1941417 | MS.gene90689:intron | 40.0% | |
GTTCCAAAGACGAATCAACT+TGG | - | chr1.4:1938958-1938977 | MS.gene90689:CDS | 40.0% | |
TCATGAAGAATAAGAGTGGG+AGG | + | chr1.4:1941557-1941576 | None:intergenic | 40.0% | |
TCTCCCAAACAAACCTTCAA+GGG | - | chr1.4:1940026-1940045 | MS.gene90689:intron | 40.0% | |
TGACAACTCCTAAACTTTCC+AGG | + | chr1.4:1941449-1941468 | None:intergenic | 40.0% | |
TGACAGCTTATCATGTCTGT+TGG | - | chr1.4:1940879-1940898 | MS.gene90689:CDS | 40.0% | |
TGGAATTTCATTTACGGACG+TGG | - | chr1.4:1942958-1942977 | MS.gene90689:intron | 40.0% | |
TGGTCACAAATGACACTAGA+TGG | + | chr1.4:1943052-1943071 | None:intergenic | 40.0% | |
TGGTTATCAGCAAAAGCAAC+TGG | + | chr1.4:1941591-1941610 | None:intergenic | 40.0% | |
TGTCATATGCGTATGTCTTG+TGG | - | chr1.4:1942386-1942405 | MS.gene90689:intron | 40.0% | |
TTACCAAGCCTGGAAAGTTT+AGG | - | chr1.4:1941438-1941457 | MS.gene90689:intron | 40.0% | |
TTACCTGCATCACGATATGA+GGG | + | chr1.4:1940989-1941008 | None:intergenic | 40.0% | |
TTATACGGCTATACTACCAG+TGG | - | chr1.4:1939914-1939933 | MS.gene90689:CDS | 40.0% | |
TTGATCCTCCTATTCGGAAA+GGG | - | chr1.4:1940952-1940971 | MS.gene90689:intron | 40.0% | |
TTTGTTCTCGACAAGGATGA+TGG | - | chr1.4:1942495-1942514 | MS.gene90689:intron | 40.0% | |
! | ACAATATTGCGTGGTTTGTC+CGG | - | chr1.4:1941407-1941426 | MS.gene90689:intron | 40.0% |
! | AGAGAGCATGACAAACTGAA+AGG | + | chr1.4:1942338-1942357 | None:intergenic | 40.0% |
! | ATCCTTCTTTGGTTCCTTCT+TGG | + | chr1.4:1942687-1942706 | None:intergenic | 40.0% |
! | ATTTTATGGAAGAGACAGGG+AGG | - | chr1.4:1938880-1938899 | MS.gene90689:CDS | 40.0% |
! | CTGGAAGTTGGTCATCATTA+AGG | + | chr1.4:1942657-1942676 | None:intergenic | 40.0% |
! | CTTTTCTCAGATGGAAAGAG+AGG | - | chr1.4:1942835-1942854 | MS.gene90689:intron | 40.0% |
! | GAAAGGAGCACAACATTGTT+AGG | + | chr1.4:1941075-1941094 | None:intergenic | 40.0% |
! | GAGAAGTTGATCTAAACGGT+TGG | - | chr1.4:1939326-1939345 | MS.gene90689:intron | 40.0% |
! | GAGAGCATGACAAACTGAAA+GGG | + | chr1.4:1942337-1942356 | None:intergenic | 40.0% |
! | GATTGGTTGGTGTGAGAATT+TGG | - | chr1.4:1941293-1941312 | MS.gene90689:intron | 40.0% |
! | GCCCGGTGTTTCTTTTTATA+AGG | + | chr1.4:1939603-1939622 | None:intergenic | 40.0% |
! | GTGAGAATTTGGTAACTCGT+GGG | - | chr1.4:1941304-1941323 | MS.gene90689:intron | 40.0% |
! | TCAAAAGATGCTGATGACGA+AGG | - | chr1.4:1942740-1942759 | MS.gene90689:intron | 40.0% |
! | TGAAACACTCAGAGCTTGTT+TGG | + | chr1.4:1938664-1938683 | None:intergenic | 40.0% |
! | TGGGGAGAAGTTGATCTAAA+CGG | - | chr1.4:1939322-1939341 | MS.gene90689:intron | 40.0% |
! | TGGTTCAAAGCAAGCTTTTG+AGG | - | chr1.4:1939988-1940007 | MS.gene90689:intron | 40.0% |
! | TGTGAGAATTTGGTAACTCG+TGG | - | chr1.4:1941303-1941322 | MS.gene90689:intron | 40.0% |
! | TGTTGATAAGGCGGACATAA+CGG | - | chr1.4:1938918-1938937 | MS.gene90689:CDS | 40.0% |
!! | AATATGCTGGCTTTCATGGT+TGG | - | chr1.4:1939968-1939987 | MS.gene90689:CDS | 40.0% |
!! | ACAAACTGGGTATTGGAACT+TGG | + | chr1.4:1940323-1940342 | None:intergenic | 40.0% |
!! | ACACCAAGTTGATTCGTCTT+TGG | + | chr1.4:1938964-1938983 | None:intergenic | 40.0% |
!! | AGGAAATATGCTGGCTTTCA+TGG | - | chr1.4:1939964-1939983 | MS.gene90689:CDS | 40.0% |
!! | ATTATTGGTGCTGCAGAATC+CGG | - | chr1.4:1938831-1938850 | MS.gene90689:intron | 40.0% |
!! | CTTGGTGTTCAGATCAAAGA+TGG | - | chr1.4:1938976-1938995 | MS.gene90689:intron | 40.0% |
!! | TTGTTTGGTTTGGCTTGGTT+TGG | - | chr1.4:1939094-1939113 | MS.gene90689:CDS | 40.0% |
!!! | TGGGTTCTTTTTTTCAGGGT+GGG | - | chr1.4:1939774-1939793 | MS.gene90689:CDS | 40.0% |
!!! | TTGTCATTTTTGCGGCTTCA+GGG | - | chr1.4:1940699-1940718 | MS.gene90689:intron | 40.0% |
AAAAACGGCAGATAACTGCC+CGG | + | chr1.4:1939620-1939639 | None:intergenic | 45.0% | |
AAAAATCTGTCGGGTATGGC+TGG | - | chr1.4:1943004-1943023 | MS.gene90689:intron | 45.0% | |
AAAGTCTGCCCTTTCCGAAT+AGG | + | chr1.4:1940963-1940982 | None:intergenic | 45.0% | |
AACACCTTCGGAGTAACTGT+TGG | - | chr1.4:1939268-1939287 | MS.gene90689:intron | 45.0% | |
AAGCACCACTACCTTCAATC+TGG | - | chr1.4:1939701-1939720 | MS.gene90689:intron | 45.0% | |
ACACCTTCGGAGTAACTGTT+GGG | - | chr1.4:1939269-1939288 | MS.gene90689:intron | 45.0% | |
ACTCCTAAACTTTCCAGGCT+TGG | + | chr1.4:1941444-1941463 | None:intergenic | 45.0% | |
AGAGAGAGAGAGAGAGCTTA+CGG | + | chr1.4:1937692-1937711 | None:intergenic | 45.0% | |
AGGATCCAAATGCACCTAAG+AGG | - | chr1.4:1942792-1942811 | MS.gene90689:intron | 45.0% | |
ATATGCGTATGTCTTGTGGG+AGG | - | chr1.4:1942390-1942409 | MS.gene90689:intron | 45.0% | |
ATGGCAGCATCATGAAGACA+TGG | - | chr1.4:1939467-1939486 | MS.gene90689:CDS | 45.0% | |
CAAAATCCAGTACAGCAGTG+TGG | - | chr1.4:1940737-1940756 | MS.gene90689:intron | 45.0% | |
CATTTCCAAAGCAGCTCTTG+AGG | + | chr1.4:1941253-1941272 | None:intergenic | 45.0% | |
CGTTACAAGGATGAGATGAG+TGG | - | chr1.4:1943188-1943207 | MS.gene90689:intron | 45.0% | |
CTTGATCCTCCTATTCGGAA+AGG | - | chr1.4:1940951-1940970 | MS.gene90689:intron | 45.0% | |
GACACAATCGAACAGAAGCA+TGG | + | chr1.4:1940608-1940627 | None:intergenic | 45.0% | |
GAGGAAATGGTGAAGGTTTG+AGG | + | chr1.4:1937755-1937774 | None:intergenic | 45.0% | |
GCACCGCCTTTGTAAAATTC+AGG | - | chr1.4:1939570-1939589 | MS.gene90689:intron | 45.0% | |
GGACAAACCACGCAATATTG+TGG | + | chr1.4:1941408-1941427 | None:intergenic | 45.0% | |
GGATCCAAATGCACCTAAGA+GGG | - | chr1.4:1942793-1942812 | MS.gene90689:intron | 45.0% | |
GGTTCTCCTACTGATGATTC+TGG | - | chr1.4:1942519-1942538 | MS.gene90689:intron | 45.0% | |
GTCTCCCAAACAAACCTTCA+AGG | - | chr1.4:1940025-1940044 | MS.gene90689:intron | 45.0% | |
TCTGCACCAGAATCATCAGT+AGG | + | chr1.4:1942528-1942547 | None:intergenic | 45.0% | |
TGACACAACTGGAGCAAATG+AGG | - | chr1.4:1940081-1940100 | MS.gene90689:intron | 45.0% | |
TGCAGTCTTTCCCTTTATGG+TGG | - | chr1.4:1939861-1939880 | MS.gene90689:intron | 45.0% | |
TGCCAAGAAGGAACCAAAGA+AGG | - | chr1.4:1942682-1942701 | MS.gene90689:intron | 45.0% | |
TGTGATGTTGGAGTTTCACG+TGG | - | chr1.4:1940057-1940076 | MS.gene90689:intron | 45.0% | |
TTCAACAACATTACCCTCGG+CGG | - | chr1.4:1937655-1937674 | MS.gene90689:CDS | 45.0% | |
TTCAAGCCCAAGTTTGGATG+AGG | + | chr1.4:1940186-1940205 | None:intergenic | 45.0% | |
TTCTGTTACTGGGCGCAATT+GGG | - | chr1.4:1939303-1939322 | MS.gene90689:intron | 45.0% | |
TTTCACGTGGATGACACAAC+TGG | - | chr1.4:1940070-1940089 | MS.gene90689:intron | 45.0% | |
TTTCTGTTACTGGGCGCAAT+TGG | - | chr1.4:1939302-1939321 | MS.gene90689:intron | 45.0% | |
! | AAAGATGCTGATGACGAAGG+AGG | - | chr1.4:1942743-1942762 | MS.gene90689:intron | 45.0% |
! | AATATTGCGTGGTTTGTCCG+GGG | - | chr1.4:1941409-1941428 | MS.gene90689:intron | 45.0% |
! | AGTTTGGAACAACTTGCAGC+TGG | - | chr1.4:1940145-1940164 | MS.gene90689:CDS | 45.0% |
! | ATGGGGTTTGCTTCTCAAAC+AGG | - | chr1.4:1939798-1939817 | MS.gene90689:intron | 45.0% |
! | CAAGTTGGAGCTGTCTTACA+AGG | - | chr1.4:1941173-1941192 | MS.gene90689:intron | 45.0% |
! | CAATATTGCGTGGTTTGTCC+GGG | - | chr1.4:1941408-1941427 | MS.gene90689:intron | 45.0% |
! | CACTCAGAGCTTGTTTGGAT+TGG | + | chr1.4:1938659-1938678 | None:intergenic | 45.0% |
! | GTTGATAAGGCGGACATAAC+GGG | - | chr1.4:1938919-1938938 | MS.gene90689:CDS | 45.0% |
! | TTCTTTGGTTCCTTCTTGGC+AGG | + | chr1.4:1942683-1942702 | None:intergenic | 45.0% |
!! | ATTCACTGGTTTCCGTGATC+AGG | - | chr1.4:1939011-1939030 | MS.gene90689:intron | 45.0% |
!! | GGGTATTGGAACTTGGTACA+TGG | + | chr1.4:1940316-1940335 | None:intergenic | 45.0% |
!! | TTATTGGTGCTGCAGAATCC+GGG | - | chr1.4:1938832-1938851 | MS.gene90689:intron | 45.0% |
!!! | CAGTTACTCCGAAGGTGTTT+TGG | + | chr1.4:1939267-1939286 | None:intergenic | 45.0% |
!!! | CTTGTCATTTTTGCGGCTTC+AGG | - | chr1.4:1940698-1940717 | MS.gene90689:intron | 45.0% |
!!! | CTTTTTTTCAGGGTGGGGAT+GGG | - | chr1.4:1939780-1939799 | MS.gene90689:CDS | 45.0% |
!!! | GGGTTCTTTTTTTCAGGGTG+GGG | - | chr1.4:1939775-1939794 | MS.gene90689:CDS | 45.0% |
!!! | GTGGGTTCTTTTTTTCAGGG+TGG | - | chr1.4:1939773-1939792 | MS.gene90689:CDS | 45.0% |
!!! | TCTTTTTTTCAGGGTGGGGA+TGG | - | chr1.4:1939779-1939798 | MS.gene90689:CDS | 45.0% |
!!! | TTTTTTTCAGGGTGGGGATG+GGG | - | chr1.4:1939781-1939800 | MS.gene90689:CDS | 45.0% |
!! | AATTACAATAATAAAAATTA+GGG | + | chr1.4:1937876-1937895 | None:intergenic | 5.0% |
!! | TAATTACAATAATAAAAATT+AGG | + | chr1.4:1937877-1937896 | None:intergenic | 5.0% |
AAACCAGACAGTGCCCTCTT+AGG | + | chr1.4:1942809-1942828 | None:intergenic | 50.0% | |
AACGGGCGTAACATGGATGA+AGG | - | chr1.4:1938936-1938955 | MS.gene90689:CDS | 50.0% | |
ACAAACTCACCTGAGCAGGA+GGG | + | chr1.4:1940361-1940380 | None:intergenic | 50.0% | |
ACAGACAAACTCACCTGAGC+AGG | + | chr1.4:1940365-1940384 | None:intergenic | 50.0% | |
AGCCCAAGTTTGGATGAGGA+AGG | + | chr1.4:1940182-1940201 | None:intergenic | 50.0% | |
AGTGCCCTCTTAGGTGCATT+TGG | + | chr1.4:1942800-1942819 | None:intergenic | 50.0% | |
CACCTTCGGAGTAACTGTTG+GGG | - | chr1.4:1939270-1939289 | MS.gene90689:intron | 50.0% | |
CGCATCAGAAATGAAGCTGG+TGG | - | chr1.4:1942031-1942050 | MS.gene90689:CDS | 50.0% | |
CTCTTGAGGAGCAGTATCTC+AGG | + | chr1.4:1941239-1941258 | None:intergenic | 50.0% | |
CTTCCAGAAACCTGCCAAGA+AGG | - | chr1.4:1942670-1942689 | MS.gene90689:intron | 50.0% | |
GAATTTGAGCGACATGCTGC+TGG | - | chr1.4:1941710-1941729 | MS.gene90689:intron | 50.0% | |
GACGGAGAACTACCTGATCA+CGG | + | chr1.4:1939026-1939045 | None:intergenic | 50.0% | |
GACTCTGATGCTAGCCAAAG+TGG | - | chr1.4:1942549-1942568 | MS.gene90689:intron | 50.0% | |
GAGCGCATCAGAAATGAAGC+TGG | - | chr1.4:1942028-1942047 | MS.gene90689:CDS | 50.0% | |
GCATGTTCAATACACAGCGG+AGG | - | chr1.4:1943124-1943143 | MS.gene90689:intron | 50.0% | |
GGAGGAGAAGGAACCTTATG+AGG | - | chr1.4:1943142-1943161 | MS.gene90689:intron | 50.0% | |
GTACCCTCATATCGTGATGC+AGG | - | chr1.4:1940983-1941002 | MS.gene90689:intron | 50.0% | |
GTTCCTTCTTGGCAGGTTTC+TGG | + | chr1.4:1942676-1942695 | None:intergenic | 50.0% | |
TCAATACACAGCGGAGGAGA+AGG | - | chr1.4:1943130-1943149 | MS.gene90689:intron | 50.0% | |
TCTATGGCTGATGTTGGTGC+TGG | - | chr1.4:1940475-1940494 | MS.gene90689:intron | 50.0% | |
TCTGATGCTAGCCAAAGTGG+TGG | - | chr1.4:1942552-1942571 | MS.gene90689:intron | 50.0% | |
TCTGTTACTGGGCGCAATTG+GGG | - | chr1.4:1939304-1939323 | MS.gene90689:intron | 50.0% | |
TGGAGATGAAAGTGACGAGG+AGG | - | chr1.4:1942051-1942070 | MS.gene90689:intron | 50.0% | |
TGGTGGAGATGAAAGTGACG+AGG | - | chr1.4:1942048-1942067 | MS.gene90689:intron | 50.0% | |
TTATGGAAGAGACAGGGAGG+TGG | - | chr1.4:1938883-1938902 | MS.gene90689:CDS | 50.0% | |
TTTCTGATGCGCTCGAGATG+TGG | + | chr1.4:1942022-1942041 | None:intergenic | 50.0% | |
! | ATATTGCGTGGTTTGTCCGG+GGG | - | chr1.4:1941410-1941429 | MS.gene90689:intron | 50.0% |
! | ATTTTTGCGGCTTCAGGGAC+AGG | - | chr1.4:1940704-1940723 | MS.gene90689:intron | 50.0% |
! | CTTGGCAGGTTTCTGGAAGT+TGG | + | chr1.4:1942669-1942688 | None:intergenic | 50.0% |
! | GTTCTCGACAAGGATGATGG+AGG | - | chr1.4:1942498-1942517 | MS.gene90689:intron | 50.0% |
! | TCCTGCCCATGCAGTTCTAA+GGG | - | chr1.4:1941911-1941930 | MS.gene90689:CDS | 50.0% |
! | TCTTGGGCTTTGGCCTCATA+AGG | + | chr1.4:1943158-1943177 | None:intergenic | 50.0% |
!! | TATTGGTGCTGCAGAATCCG+GGG | - | chr1.4:1938833-1938852 | MS.gene90689:intron | 50.0% |
ACCAACTGTTGGTGTGGCCA+AGG | - | chr1.4:1941964-1941983 | MS.gene90689:CDS | 55.0% | |
ACCTTGGCCACACCAACAGT+TGG | + | chr1.4:1941968-1941987 | None:intergenic | 55.0% | |
CCTCTGTCTCACCACCACTT+TGG | + | chr1.4:1942566-1942585 | None:intergenic | 55.0% | |
CTCCCCAACAGTTACTCCGA+AGG | + | chr1.4:1939275-1939294 | None:intergenic | 55.0% | |
CTGCTCCTCAAGAGCTGCTT+TGG | - | chr1.4:1941245-1941264 | MS.gene90689:intron | 55.0% | |
GACAAACTCACCTGAGCAGG+AGG | + | chr1.4:1940362-1940381 | None:intergenic | 55.0% | |
GCTGATGCCCAACCAACTGT+TGG | - | chr1.4:1941953-1941972 | MS.gene90689:CDS | 55.0% | |
GGCCACACCAACAGTTGGTT+GGG | + | chr1.4:1941963-1941982 | None:intergenic | 55.0% | |
GTCCTGCCCATGCAGTTCTA+AGG | - | chr1.4:1941910-1941929 | MS.gene90689:CDS | 55.0% | |
GTCTGCCCTTTCCGAATAGG+AGG | + | chr1.4:1940960-1940979 | None:intergenic | 55.0% | |
TGCCCAACCAACTGTTGGTG+TGG | - | chr1.4:1941958-1941977 | MS.gene90689:CDS | 55.0% | |
TGGCCACACCAACAGTTGGT+TGG | + | chr1.4:1941964-1941983 | None:intergenic | 55.0% | |
TTTGAGCGACATGCTGCTGG+TGG | - | chr1.4:1941713-1941732 | MS.gene90689:intron | 55.0% | |
! | AGGCTTGGTAACTTTGCCCC+CGG | + | chr1.4:1941429-1941448 | None:intergenic | 55.0% |
! | CCAAAGTGGTGGTGAGACAG+AGG | - | chr1.4:1942563-1942582 | MS.gene90689:intron | 55.0% |
!! | ACGGACGTGGGAAGAGTACT+TGG | - | chr1.4:1942971-1942990 | MS.gene90689:intron | 55.0% |
!! | ATGGCTGATGTTGGTGCTGG+AGG | - | chr1.4:1940478-1940497 | MS.gene90689:intron | 55.0% |
!! | CGGACATAACGGGCGTAACA+TGG | - | chr1.4:1938929-1938948 | MS.gene90689:CDS | 55.0% |
GCCCTTAGAACTGCATGGGC+AGG | + | chr1.4:1941915-1941934 | None:intergenic | 60.0% | |
GCGCTCGAGATGTGGATCGA+CGG | + | chr1.4:1942014-1942033 | None:intergenic | 60.0% | |
GGCGAACCACACTGCTGTAC+TGG | + | chr1.4:1940746-1940765 | None:intergenic | 60.0% | |
GGGGGCAAAGTTACCAAGCC+TGG | - | chr1.4:1941428-1941447 | MS.gene90689:intron | 60.0% | |
GTCTTGTGGGAGGCTGCATG+TGG | - | chr1.4:1942400-1942419 | MS.gene90689:intron | 60.0% | |
TGAAGATCGCCCTCCTGCTC+AGG | - | chr1.4:1940349-1940368 | MS.gene90689:intron | 60.0% | |
!! | GCACCTAAGAGGGCACTGTC+TGG | - | chr1.4:1942803-1942822 | MS.gene90689:intron | 60.0% |
AACATTACCCTCGGCGGCCG+TGG | - | chr1.4:1937661-1937680 | MS.gene90689:CDS | 65.0% | |
TGTGGGAGGCTGCATGTGGC+AGG | - | chr1.4:1942404-1942423 | MS.gene90689:intron | 65.0% | |
!! | GAGAGCTTACGGTGCCGCCA+CGG | + | chr1.4:1937681-1937700 | None:intergenic | 65.0% |
ATTACCCTCGGCGGCCGTGG+CGG | - | chr1.4:1937664-1937683 | MS.gene90689:CDS | 70.0% | |
!! | GGTGCCGCCACGGCCGCCGA+GGG | + | chr1.4:1937671-1937690 | None:intergenic | 85.0% |
!!! | CGGTGCCGCCACGGCCGCCG+AGG | + | chr1.4:1937672-1937691 | None:intergenic | 90.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 1937637 | 1943271 | 1937637 | ID=MS.gene90689 |
chr1.4 | mRNA | 1937637 | 1943271 | 1937637 | ID=MS.gene90689.t1;Parent=MS.gene90689 |
chr1.4 | exon | 1943218 | 1943271 | 1943218 | ID=MS.gene90689.t1.exon1;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1943218 | 1943271 | 1943218 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1941876 | 1942061 | 1941876 | ID=MS.gene90689.t1.exon2;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1941876 | 1942061 | 1941876 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1941565 | 1941670 | 1941565 | ID=MS.gene90689.t1.exon3;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1941565 | 1941670 | 1941565 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1940806 | 1940942 | 1940806 | ID=MS.gene90689.t1.exon4;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1940806 | 1940942 | 1940806 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1940538 | 1940621 | 1940538 | ID=MS.gene90689.t1.exon5;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1940538 | 1940621 | 1940538 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1940360 | 1940454 | 1940360 | ID=MS.gene90689.t1.exon6;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1940360 | 1940454 | 1940360 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1940126 | 1940234 | 1940126 | ID=MS.gene90689.t1.exon7;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1940126 | 1940234 | 1940126 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1939904 | 1939990 | 1939904 | ID=MS.gene90689.t1.exon8;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1939904 | 1939990 | 1939904 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1939714 | 1939806 | 1939714 | ID=MS.gene90689.t1.exon9;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1939714 | 1939806 | 1939714 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1939328 | 1939525 | 1939328 | ID=MS.gene90689.t1.exon10;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1939328 | 1939525 | 1939328 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1939065 | 1939210 | 1939065 | ID=MS.gene90689.t1.exon11;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1939065 | 1939210 | 1939065 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1938836 | 1938983 | 1938836 | ID=MS.gene90689.t1.exon12;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1938836 | 1938983 | 1938836 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1938324 | 1938422 | 1938324 | ID=MS.gene90689.t1.exon13;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1938324 | 1938422 | 1938324 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1938052 | 1938231 | 1938052 | ID=MS.gene90689.t1.exon14;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1938052 | 1938231 | 1938052 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1937892 | 1937970 | 1937892 | ID=MS.gene90689.t1.exon15;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1937892 | 1937970 | 1937892 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
chr1.4 | exon | 1937637 | 1937767 | 1937637 | ID=MS.gene90689.t1.exon16;Parent=MS.gene90689.t1 |
chr1.4 | CDS | 1937637 | 1937767 | 1937637 | ID=cds.MS.gene90689.t1;Parent=MS.gene90689.t1 |
Gene Sequence |
Protein sequence |