Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80820.t1 | XP_003616631.1 | 96 | 630 | 23 | 1 | 1 | 628 | 19 | 648 | 9.40E-303 | 1048.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80820.t1 | O04235 | 87.1 | 629 | 75 | 3 | 1 | 628 | 19 | 642 | 4.5e-277 | 954.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80820.t1 | G7KH07 | 96.0 | 630 | 23 | 1 | 1 | 628 | 19 | 648 | 6.8e-303 | 1048.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene80820.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80820.t1 | MTR_5g082570 | 97.937 | 630 | 11 | 1 | 1 | 628 | 19 | 648 | 0.0 | 1267 |
| MS.gene80820.t1 | MTR_1g022345 | 88.854 | 628 | 67 | 1 | 1 | 628 | 19 | 643 | 0.0 | 1075 |
| MS.gene80820.t1 | MTR_3g108380 | 72.581 | 62 | 17 | 0 | 524 | 585 | 30 | 91 | 4.44e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80820.t1 | AT3G28730 | 75.436 | 631 | 147 | 5 | 1 | 627 | 19 | 645 | 0.0 | 895 |
| MS.gene80820.t1 | AT3G51880 | 45.122 | 82 | 44 | 1 | 531 | 611 | 41 | 122 | 9.96e-11 | 61.6 |
Find 138 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTAAGCCTGGAAAATTT+AGG | 0.219977 | 5.3:-66790096 | MS.gene80820:CDS |
| CACTTATTCCAAAGGTGTTT+TGG | 0.231104 | 5.3:+66792101 | None:intergenic |
| ACAGTATTACGTGGCTTGTC+TGG | 0.233775 | 5.3:-66790127 | MS.gene80820:CDS |
| GGGTCTCCTACTGATGATTC+TGG | 0.258546 | 5.3:-66789028 | MS.gene80820:CDS |
| ATTCCCCTCTTGGGTGCATT+TGG | 0.275228 | 5.3:+66788732 | None:intergenic |
| TAATCCTGGGATTTCATTTA+CGG | 0.275475 | 5.3:-66788525 | MS.gene80820:CDS |
| TTTCTGTTAGCGGGCGCAAT+TGG | 0.275567 | 5.3:-66792063 | MS.gene80820:CDS |
| GTAACAAGAGTGGGAGGTTT+AGG | 0.278780 | 5.3:+66789986 | None:intergenic |
| AGGAAATATGCTGGCTTTCA+TGG | 0.282409 | 5.3:-66791593 | MS.gene80820:CDS |
| GATGCTGTTGTTACATTTGA+TGG | 0.292831 | 5.3:-66791071 | MS.gene80820:CDS |
| GGGTGTTGGAATTCGGTATA+TGG | 0.303438 | 5.3:+66791264 | None:intergenic |
| TGGGGAGAAGTTGATTTAAA+TGG | 0.308241 | 5.3:-66792043 | MS.gene80820:intron |
| TTAGAAGACAGATCCTTCTT+TGG | 0.323308 | 5.3:+66788843 | None:intergenic |
| TTCTGTTAGCGGGCGCAATT+GGG | 0.325415 | 5.3:-66792062 | MS.gene80820:CDS |
| ACACCAAGTTGATTAGTCTT+TGG | 0.335916 | 5.3:+66792391 | None:intergenic |
| GGCTTGAAAATTATGCATTT+AGG | 0.341853 | 5.3:-66789614 | MS.gene80820:CDS |
| AAAGAAGGATCTGTCTTCTA+AGG | 0.353142 | 5.3:-66788841 | MS.gene80820:CDS |
| GTCGAACTACACTGCTATAC+TGG | 0.359472 | 5.3:+66790819 | None:intergenic |
| CAGATTGGAGTTGTCGTATA+AGG | 0.360980 | 5.3:-66790369 | MS.gene80820:intron |
| CAACCGATGAATATTGATTC+AGG | 0.372802 | 5.3:-66788249 | MS.gene80820:CDS |
| CAAAATTACTTGGAGAGAAC+TGG | 0.390368 | 5.3:-66788496 | MS.gene80820:CDS |
| ATACTGTGGTGAACACTTCA+TGG | 0.393386 | 5.3:+66790143 | None:intergenic |
| CAGTATTACGTGGCTTGTCT+GGG | 0.395701 | 5.3:-66790126 | MS.gene80820:CDS |
| AACGAGTACCACAATTTGTA+TGG | 0.395792 | 5.3:-66789736 | MS.gene80820:CDS |
| CTGTCATTCTTGCGGCTTCA+AGG | 0.398065 | 5.3:-66790863 | MS.gene80820:CDS |
| TAAAATGTTACCTCGGTGTA+AGG | 0.403709 | 5.3:+66791039 | None:intergenic |
| GCACCCAAGAGGGGAATGTC+TGG | 0.406706 | 5.3:-66788726 | MS.gene80820:CDS |
| ACAAACTGGGTGTTGGAATT+CGG | 0.407573 | 5.3:+66791257 | None:intergenic |
| ATTACCTGCATCACAATATG+AGG | 0.420402 | 5.3:+66790550 | None:intergenic |
| ACGGATGTGGCAAAATTACT+TGG | 0.423556 | 5.3:-66788506 | MS.gene80820:CDS |
| GAATCCAGACATTCCCCTCT+TGG | 0.427330 | 5.3:+66788722 | None:intergenic |
| AATTCCAACACCCAGTTTGT+TGG | 0.433634 | 5.3:-66791254 | MS.gene80820:CDS |
| ATCTCAGAAAGATTCGTTGA+TGG | 0.433640 | 5.3:-66791297 | MS.gene80820:intron |
| AATATAAAGAAAGCTAATCC+TGG | 0.438071 | 5.3:-66788539 | MS.gene80820:CDS |
| TTCTCTGAATATTACGAAAG+AGG | 0.438473 | 5.3:+66789758 | None:intergenic |
| ATTCTTGCGGCTTCAAGGAC+AGG | 0.439827 | 5.3:-66790858 | MS.gene80820:CDS |
| TGAAAATTGCCCACCTGCTC+AGG | 0.441127 | 5.3:-66791228 | MS.gene80820:intron |
| AGCCACACCAGTAGTTGGTT+GGG | 0.447410 | 5.3:+66789586 | None:intergenic |
| AATCCAGACATTCCCCTCTT+GGG | 0.456255 | 5.3:+66788723 | None:intergenic |
| GTCTCACAAACTAACCTTCA+AGG | 0.456533 | 5.3:-66791532 | MS.gene80820:CDS |
| GGTCTCCTACTGATGATTCT+GGG | 0.456976 | 5.3:-66789027 | MS.gene80820:CDS |
| TGAAGACTTCGTTGCCGAAA+AGG | 0.457341 | 5.3:-66789059 | MS.gene80820:CDS |
| ATTCACTGGATTTCGTGATC+AGG | 0.458777 | 5.3:-66792341 | MS.gene80820:intron |
| GTACCCTCATATTGTGATGC+AGG | 0.458886 | 5.3:-66790554 | MS.gene80820:intron |
| TGGGATTTCATTTACGGATG+TGG | 0.460128 | 5.3:-66788519 | MS.gene80820:CDS |
| TTCCATGTGGATGACACAAC+TGG | 0.462015 | 5.3:-66791487 | MS.gene80820:CDS |
| GGGGCCAAAGTTACTAAGCC+TGG | 0.468481 | 5.3:-66790106 | MS.gene80820:CDS |
| ACCTGAACATGCAGTTCAAA+GGG | 0.471466 | 5.3:-66789635 | MS.gene80820:intron |
| CCTCTTTCTCATCACCACTT+TGG | 0.473171 | 5.3:+66788984 | None:intergenic |
| GGGTTGTTCTACAAATTCAC+TGG | 0.473286 | 5.3:-66792355 | MS.gene80820:CDS |
| TCATCTCTGAAAGCTGAAGA+TGG | 0.473971 | 5.3:-66790046 | MS.gene80820:CDS |
| CTTGGTGTTCAGATCAAAGA+AGG | 0.475188 | 5.3:-66792376 | MS.gene80820:CDS |
| ACCTTAGCCACACCAGTAGT+TGG | 0.481295 | 5.3:+66789581 | None:intergenic |
| GTTGCCGAAAAGGACGATGA+AGG | 0.482808 | 5.3:-66789049 | MS.gene80820:CDS |
| CTCCTTTACACTTATTCCAA+AGG | 0.483306 | 5.3:+66792093 | None:intergenic |
| TTCCATTTCAGGAAATATGC+TGG | 0.483906 | 5.3:-66791602 | MS.gene80820:intron |
| TTATGTGGTTGAAAGTGAAT+TGG | 0.487973 | 5.3:-66790429 | MS.gene80820:CDS |
| GAATCAATATTCATCGGTTG+TGG | 0.489399 | 5.3:+66788252 | None:intergenic |
| AGAAGCAACTTTCTGTTAGC+GGG | 0.495842 | 5.3:-66792072 | MS.gene80820:CDS |
| GTGGCCGACGTTGGTGTTGG+AGG | 0.496458 | 5.3:-66791098 | MS.gene80820:CDS |
| TGGTGTGGCTAAGGTTCTTG+AGG | 0.498002 | 5.3:-66789573 | MS.gene80820:CDS |
| ATTCTATAGATATACCTCAT+TGG | 0.500824 | 5.3:+66791462 | None:intergenic |
| GGTGTGGCTAAGGTTCTTGA+GGG | 0.503505 | 5.3:-66789572 | MS.gene80820:CDS |
| TATTACGAAAGAGGTGCTCT+TGG | 0.505169 | 5.3:+66789767 | None:intergenic |
| TGATCGGGGTTGTAGAATCC+GGG | 0.506188 | 5.3:-66792520 | None:intergenic |
| CTCTAAGTACAAAGACAGAT+TGG | 0.506656 | 5.3:-66790384 | MS.gene80820:CDS |
| ATCACCAACAAACTGGGTGT+TGG | 0.507629 | 5.3:+66791250 | None:intergenic |
| ACCAACTACTGGTGTGGCTA+AGG | 0.508426 | 5.3:-66789582 | MS.gene80820:CDS |
| AGCTTTCGAAGTGCCTTTAG+CGG | 0.509555 | 5.3:-66791557 | MS.gene80820:CDS |
| ACACGAGCCTTTGCCTCGTA+TGG | 0.510732 | 5.3:+66788321 | None:intergenic |
| GAGAAGCAACTTTCTGTTAG+CGG | 0.514450 | 5.3:-66792073 | MS.gene80820:CDS |
| GTTTGTGAGACGTCCGCTAA+AGG | 0.515987 | 5.3:+66791544 | None:intergenic |
| CTTGAAGCCGCAAGAATGAC+AGG | 0.517227 | 5.3:+66790864 | None:intergenic |
| TTCTGACTAGATTGACTATG+TGG | 0.520017 | 5.3:-66789860 | MS.gene80820:intron |
| CACCTTTGGAATAAGTGTAA+AGG | 0.520401 | 5.3:-66792095 | MS.gene80820:CDS |
| AATATGCTGGCTTTCATGGT+TGG | 0.520470 | 5.3:-66791589 | MS.gene80820:CDS |
| GTGAACAAACTCACCTGAGC+AGG | 0.527575 | 5.3:+66791215 | None:intergenic |
| CCAAAGTGGTGATGAGAAAG+AGG | 0.530710 | 5.3:-66788984 | MS.gene80820:intron |
| TAGCCACACCAGTAGTTGGT+TGG | 0.530732 | 5.3:+66789585 | None:intergenic |
| TACCTGAACATGCAGTTCAA+AGG | 0.530797 | 5.3:-66789636 | MS.gene80820:intron |
| TGATAAAACCATACAAATTG+TGG | 0.532500 | 5.3:+66789728 | None:intergenic |
| TTTCCTGAATCAATATTCAT+CGG | 0.535542 | 5.3:+66788246 | None:intergenic |
| AACAAACTCACCTGAGCAGG+TGG | 0.540462 | 5.3:+66791218 | None:intergenic |
| GGAGATGCCCAACCAACTAC+TGG | 0.540924 | 5.3:-66789593 | MS.gene80820:CDS |
| TCAAAAGATGCAGATGAAGA+TGG | 0.544147 | 5.3:-66788786 | MS.gene80820:CDS |
| CACTCTTGTTACTCATGAAG+AGG | 0.544159 | 5.3:-66789975 | MS.gene80820:intron |
| GAATTTGAGCGACATGCTGC+TGG | 0.545421 | 5.3:-66789838 | MS.gene80820:CDS |
| TCTGTGGCCGACGTTGGTGT+TGG | 0.546144 | 5.3:-66791101 | MS.gene80820:CDS |
| AATGAATCTGACAGTGCCTA+AGG | 0.547696 | 5.3:-66788225 | None:intergenic |
| AAATTTAGGAGTTGTCAAGA+TGG | 0.550659 | 5.3:-66790082 | MS.gene80820:CDS |
| TTGCCGAAAAGGACGATGAA+GGG | 0.553982 | 5.3:-66789048 | MS.gene80820:CDS |
| GGATCCAAATGCACCCAAGA+GGG | 0.558632 | 5.3:-66788736 | MS.gene80820:CDS |
| TTTCTGATGCGCTCAAGATG+TGG | 0.559322 | 5.3:+66789527 | None:intergenic |
| AGTTACACCTGTCATTCTTG+CGG | 0.563102 | 5.3:-66790871 | MS.gene80820:CDS |
| AGTGAGCGTGACATGGATGA+AGG | 0.565116 | 5.3:-66792416 | MS.gene80820:CDS |
| ATATAAAGAAAGCTAATCCT+GGG | 0.568398 | 5.3:-66788538 | MS.gene80820:CDS |
| AAAGAAGAAGCTCTTCTCAA+GGG | 0.568660 | 5.3:+66790012 | None:intergenic |
| TTTGAGCGACATGCTGCTGG+TGG | 0.569661 | 5.3:-66789835 | MS.gene80820:CDS |
| CCGTAATAAAATAATGTCTG+TGG | 0.570681 | 5.3:-66791117 | MS.gene80820:CDS |
| TCTCACAAACTAACCTTCAA+GGG | 0.570778 | 5.3:-66791531 | MS.gene80820:CDS |
| CTCCAGTTGTGTCATCCACA+TGG | 0.578099 | 5.3:+66791485 | None:intergenic |
| GAAAGAAGAAGCTCTTCTCA+AGG | 0.578564 | 5.3:+66790011 | None:intergenic |
| TGAATGTACAGCTGAGGAGA+AGG | 0.578829 | 5.3:-66788346 | MS.gene80820:intron |
| GAAGGAGCCATACGAGGCAA+AGG | 0.582318 | 5.3:-66788328 | MS.gene80820:CDS |
| CTAATAACGACGAAGGTATG+TGG | 0.584079 | 5.3:+66790610 | None:intergenic |
| ATAGTTCGAAACTGATTATG+TGG | 0.585231 | 5.3:-66790444 | MS.gene80820:intron |
| CTGACATAGTGAGCGTGACA+TGG | 0.596124 | 5.3:-66792423 | MS.gene80820:CDS |
| GAGCGCATCAGAAATGAAGC+TGG | 0.599655 | 5.3:-66789518 | MS.gene80820:CDS |
| GTCTCCTACTGATGATTCTG+GGG | 0.610889 | 5.3:-66789026 | MS.gene80820:CDS |
| TCTTCATGAGTAACAAGAGT+GGG | 0.616456 | 5.3:+66789977 | None:intergenic |
| AAGAAGAAGCTCTTCTCAAG+GGG | 0.618644 | 5.3:+66790013 | None:intergenic |
| TCTGTTAGCGGGCGCAATTG+GGG | 0.620357 | 5.3:-66792061 | MS.gene80820:CDS |
| GTTCCAAAGACTAATCAACT+TGG | 0.620408 | 5.3:-66792394 | MS.gene80820:CDS |
| TGCCCAACCAACTACTGGTG+TGG | 0.630935 | 5.3:-66789588 | MS.gene80820:CDS |
| GATTCTGATGCTAGCCAAAG+TGG | 0.631437 | 5.3:-66788998 | MS.gene80820:CDS |
| ACATCCGTAAATGAAATCCC+AGG | 0.636983 | 5.3:+66788521 | None:intergenic |
| CTCTTCATGAGTAACAAGAG+TGG | 0.642987 | 5.3:+66789976 | None:intergenic |
| AGTATTACGTGGCTTGTCTG+GGG | 0.645525 | 5.3:-66790125 | MS.gene80820:CDS |
| GATCCAAATGCACCCAAGAG+GGG | 0.645585 | 5.3:-66788735 | MS.gene80820:CDS |
| ATAATGTCTGTGGCCGACGT+TGG | 0.646831 | 5.3:-66791107 | MS.gene80820:CDS |
| TTGGTGTTCAGATCAAAGAA+GGG | 0.650065 | 5.3:-66792375 | MS.gene80820:CDS |
| TTGAGCGACATGCTGCTGGT+GGG | 0.652007 | 5.3:-66789834 | MS.gene80820:CDS |
| TCATGAGTAACAAGAGTGGG+AGG | 0.655574 | 5.3:+66789980 | None:intergenic |
| TGACACAACTGGAGCCAATG+AGG | 0.660429 | 5.3:-66791476 | MS.gene80820:intron |
| TCTGCCCCAGAATCATCAGT+AGG | 0.661015 | 5.3:+66789022 | None:intergenic |
| TTCACCTCCAACACCAACGT+CGG | 0.664425 | 5.3:+66791094 | None:intergenic |
| GATCGGGGTTGTAGAATCCG+GGG | 0.665238 | 5.3:-66792519 | None:intergenic |
| AGGATCCAAATGCACCCAAG+AGG | 0.672756 | 5.3:-66788737 | MS.gene80820:CDS |
| GTGTTCACCACAGTATTACG+TGG | 0.675365 | 5.3:-66790136 | MS.gene80820:CDS |
| TTACCTGCATCACAATATGA+GGG | 0.680413 | 5.3:+66790551 | None:intergenic |
| GTCGAGACTAATAACGACGA+AGG | 0.690699 | 5.3:+66790603 | None:intergenic |
| TGAGGAGAAGGAGCCATACG+AGG | 0.695374 | 5.3:-66788334 | MS.gene80820:CDS |
| TGGTGAAGATGAAAGTGACG+AGG | 0.704697 | 5.3:-66789498 | MS.gene80820:CDS |
| AGACAAGCCACGTAATACTG+TGG | 0.714541 | 5.3:+66790129 | None:intergenic |
| ACAAACTCACCTGAGCAGGT+GGG | 0.719960 | 5.3:+66791219 | None:intergenic |
| TGTGATCTTGGAGTTCCATG+TGG | 0.743249 | 5.3:-66791500 | MS.gene80820:CDS |
| TGAAGATGAAAGTGACGAGG+AGG | 0.754949 | 5.3:-66789495 | MS.gene80820:intron |
| GTATTGCAATCCTTACACCG+AGG | 0.833639 | 5.3:-66791049 | MS.gene80820:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATATCAAATATAGATT+AGG | + | chr5.3:66791265-66791284 | None:intergenic | 10.0% |
| !! | TTATGTTATATATATACCAA+TGG | - | chr5.3:66792067-66792086 | MS.gene80820:CDS | 15.0% |
| !!! | TTGCTTTTGTATATATTAAT+CGG | - | chr5.3:66791632-66791651 | MS.gene80820:intron | 15.0% |
| !! | AAATCAATAATCAACAGTTT+AGG | + | chr5.3:66790394-66790413 | None:intergenic | 20.0% |
| !! | ATAGATAATAAACAATAGTC+TGG | + | chr5.3:66791484-66791503 | None:intergenic | 20.0% |
| !! | ATTTACAATTCAATAATCAG+GGG | - | chr5.3:66790561-66790580 | MS.gene80820:CDS | 20.0% |
| !! | CATTTACAATTCAATAATCA+GGG | - | chr5.3:66790560-66790579 | MS.gene80820:CDS | 20.0% |
| !! | CTACATCAAATATATGTAAT+TGG | + | chr5.3:66788441-66788460 | None:intergenic | 20.0% |
| !! | GACTATCATATATTAAATAC+TGG | - | chr5.3:66790802-66790821 | MS.gene80820:CDS | 20.0% |
| !! | TAATTTATATCCAACAACAT+TGG | - | chr5.3:66791365-66791384 | MS.gene80820:intron | 20.0% |
| !! | TAGATCATAAAATAAACCTT+AGG | + | chr5.3:66789950-66789969 | None:intergenic | 20.0% |
| !! | TCATTTACAATTCAATAATC+AGG | - | chr5.3:66790559-66790578 | MS.gene80820:CDS | 20.0% |
| !!! | CTTTTATAAAGTTCTAATAC+TGG | - | chr5.3:66789086-66789105 | MS.gene80820:intron | 20.0% |
| ! | AAAATCTTCCTTATCCAAAT+TGG | - | chr5.3:66789343-66789362 | MS.gene80820:intron | 25.0% |
| ! | AATATAAAGAAAGCTAATCC+TGG | - | chr5.3:66792193-66792212 | MS.gene80820:intron | 25.0% |
| ! | AATCTTCAGTATAAGATGAA+TGG | + | chr5.3:66788953-66788972 | None:intergenic | 25.0% |
| ! | AGATGTAGATATTAATGACT+GGG | - | chr5.3:66788523-66788542 | MS.gene80820:CDS | 25.0% |
| ! | ATATAAAGAAAGCTAATCCT+GGG | - | chr5.3:66792194-66792213 | MS.gene80820:intron | 25.0% |
| ! | ATATATGTAATTGGACATTC+AGG | + | chr5.3:66788432-66788451 | None:intergenic | 25.0% |
| ! | ATTCTATAGATATACCTCAT+TGG | + | chr5.3:66789273-66789292 | None:intergenic | 25.0% |
| ! | CAGATAAAAATATATTCTGG+GGG | - | chr5.3:66788236-66788255 | MS.gene80820:CDS | 25.0% |
| ! | CATATATTTGATGTAGACTA+AGG | - | chr5.3:66788445-66788464 | MS.gene80820:intron | 25.0% |
| ! | CGTTCTAATTTAAGTAAACA+AGG | - | chr5.3:66791335-66791354 | MS.gene80820:intron | 25.0% |
| ! | GAAAAAACAGAAGAAGAAAA+AGG | - | chr5.3:66791975-66791994 | MS.gene80820:intron | 25.0% |
| ! | GAAAACATCAACATAAGAAA+TGG | + | chr5.3:66788575-66788594 | None:intergenic | 25.0% |
| ! | GATTGATTGATGTGTAAATT+TGG | - | chr5.3:66790485-66790504 | MS.gene80820:intron | 25.0% |
| ! | GCAGATAAAAATATATTCTG+GGG | - | chr5.3:66788235-66788254 | MS.gene80820:CDS | 25.0% |
| ! | GGCAGATAAAAATATATTCT+GGG | - | chr5.3:66788234-66788253 | MS.gene80820:CDS | 25.0% |
| ! | TATCCTTATATTTCCATTTC+AGG | - | chr5.3:66789119-66789138 | MS.gene80820:intron | 25.0% |
| ! | TATTTGATCTTTCTCTTGAA+AGG | + | chr5.3:66789793-66789812 | None:intergenic | 25.0% |
| ! | TCTGTCAAAATGTTAATCAA+AGG | + | chr5.3:66788506-66788525 | None:intergenic | 25.0% |
| ! | TGATAAAACCATACAAATTG+TGG | + | chr5.3:66791007-66791026 | None:intergenic | 25.0% |
| ! | TTTCCTGAAATGGAAATATA+AGG | + | chr5.3:66789125-66789144 | None:intergenic | 25.0% |
| ! | TTTCCTGAATCAATATTCAT+CGG | + | chr5.3:66792489-66792508 | None:intergenic | 25.0% |
| !! | ATTCATGTTCTTTTCTCAAA+TGG | - | chr5.3:66792029-66792048 | MS.gene80820:intron | 25.0% |
| !! | CAAATATTTTCCAATGTTGT+TGG | + | chr5.3:66791378-66791397 | None:intergenic | 25.0% |
| !! | CTTTTGTATATATTAATCGG+TGG | - | chr5.3:66791635-66791654 | MS.gene80820:intron | 25.0% |
| !! | GAGGTAACATTTTAAATACT+CGG | - | chr5.3:66789702-66789721 | MS.gene80820:intron | 25.0% |
| !! | GAGTATTTAAAATGTTACCT+CGG | + | chr5.3:66789703-66789722 | None:intergenic | 25.0% |
| !! | TGCATAATATTTTTCGTATC+AGG | - | chr5.3:66789588-66789607 | MS.gene80820:CDS | 25.0% |
| !!! | ACAATTTGTATGGTTTTATC+AGG | - | chr5.3:66791006-66791025 | MS.gene80820:intron | 25.0% |
| !!! | CCACAGACATTATTTTATTA+CGG | + | chr5.3:66789618-66789637 | None:intergenic | 25.0% |
| AAATTTAGGAGTTGTCAAGA+TGG | - | chr5.3:66790650-66790669 | MS.gene80820:intron | 30.0% | |
| ACAAAAGATGTAAAGAGTAG+AGG | + | chr5.3:66791818-66791837 | None:intergenic | 30.0% | |
| ACAACTTAGTAACACATGAT+AGG | + | chr5.3:66792353-66792372 | None:intergenic | 30.0% | |
| ACTAGTTGCCAAGTAAAATT+TGG | + | chr5.3:66791049-66791068 | None:intergenic | 30.0% | |
| ATAGTTCGAAACTGATTATG+TGG | - | chr5.3:66790288-66790307 | MS.gene80820:intron | 30.0% | |
| ATATGCAATACAGAAAACAC+AGG | + | chr5.3:66791519-66791538 | None:intergenic | 30.0% | |
| ATGTGTAAATTTGGTACTGT+GGG | - | chr5.3:66790494-66790513 | MS.gene80820:intron | 30.0% | |
| ATTACTGTTCAAGTCCAATT+TGG | + | chr5.3:66789360-66789379 | None:intergenic | 30.0% | |
| CAGATGTAGATATTAATGAC+TGG | - | chr5.3:66788522-66788541 | MS.gene80820:CDS | 30.0% | |
| CATTGGAAAATATTTGAGCA+TGG | - | chr5.3:66791382-66791401 | MS.gene80820:intron | 30.0% | |
| CCGTAATAAAATAATGTCTG+TGG | - | chr5.3:66789615-66789634 | MS.gene80820:CDS | 30.0% | |
| GACTAAGGAATTCAAATATC+TGG | - | chr5.3:66788460-66788479 | MS.gene80820:intron | 30.0% | |
| GGCTTGAAAATTATGCATTT+AGG | - | chr5.3:66791118-66791137 | MS.gene80820:CDS | 30.0% | |
| GGGCAGATAAAAATATATTC+TGG | - | chr5.3:66788233-66788252 | MS.gene80820:CDS | 30.0% | |
| TACCGAAAAATATTTCCACA+GGG | + | chr5.3:66791605-66791624 | None:intergenic | 30.0% | |
| TCATCTTATACTGAAGATTG+TGG | - | chr5.3:66788954-66788973 | MS.gene80820:intron | 30.0% | |
| TTACTAAGCCTGGAAAATTT+AGG | - | chr5.3:66790636-66790655 | MS.gene80820:intron | 30.0% | |
| TTATAGACAATCTTGCAGAA+GGG | + | chr5.3:66792130-66792149 | None:intergenic | 30.0% | |
| TTATGTGGTTGAAAGTGAAT+TGG | - | chr5.3:66790303-66790322 | MS.gene80820:intron | 30.0% | |
| TTCTCTGAATATTACGAAAG+AGG | + | chr5.3:66790977-66790996 | None:intergenic | 30.0% | |
| TTTACATGAACTGACTATTG+TGG | - | chr5.3:66788721-66788740 | MS.gene80820:CDS | 30.0% | |
| ! | AAAGTTTGTCCTTTTCGAAT+AGG | + | chr5.3:66790158-66790177 | None:intergenic | 30.0% |
| ! | AAGTTTGTCCTTTTCGAATA+GGG | + | chr5.3:66790157-66790176 | None:intergenic | 30.0% |
| ! | AATTTTCATCACCAACAAAC+TGG | + | chr5.3:66789492-66789511 | None:intergenic | 30.0% |
| ! | ATAGGATTTTATCAGTGATC+GGG | + | chr5.3:66792335-66792354 | None:intergenic | 30.0% |
| ! | ATATACCAATGGTTTCGTTT+TGG | - | chr5.3:66792078-66792097 | MS.gene80820:CDS | 30.0% |
| ! | ATTTTCATCACCAACAAACT+GGG | + | chr5.3:66789491-66789510 | None:intergenic | 30.0% |
| ! | GATAGGATTTTATCAGTGAT+CGG | + | chr5.3:66792336-66792355 | None:intergenic | 30.0% |
| ! | GTTGATGTTTTCTATTTTGC+AGG | - | chr5.3:66788583-66788602 | MS.gene80820:intron | 30.0% |
| ! | TATGCTGATATTTTCAGCAA+GGG | - | chr5.3:66788897-66788916 | MS.gene80820:intron | 30.0% |
| ! | TGTTGATAAAAAACGTTACG+AGG | - | chr5.3:66792431-66792450 | MS.gene80820:CDS | 30.0% |
| ! | TTCCCTGTGGAAATATTTTT+CGG | - | chr5.3:66791600-66791619 | MS.gene80820:intron | 30.0% |
| !! | AATGGTTTCGTTTTGGATTT+GGG | - | chr5.3:66792085-66792104 | MS.gene80820:CDS | 30.0% |
| !! | AGATTGTGGTTTTTCAAACA+AGG | - | chr5.3:66788968-66788987 | MS.gene80820:intron | 30.0% |
| !! | CAGATTTTAGTCTGATAAGT+AGG | + | chr5.3:66790944-66790963 | None:intergenic | 30.0% |
| !! | GAATATATTTTTATCTGCCC+CGG | + | chr5.3:66788233-66788252 | None:intergenic | 30.0% |
| !! | GGTTTCTGGTTTACTAATTT+AGG | - | chr5.3:66790213-66790232 | MS.gene80820:intron | 30.0% |
| !! | TATATTCTGGGGGAATTTTA+TGG | - | chr5.3:66788246-66788265 | MS.gene80820:CDS | 30.0% |
| !!! | AAAGGTGTTTTGGAAAAAAC+TGG | + | chr5.3:66788624-66788643 | None:intergenic | 30.0% |
| !!! | AGTTTTTTCCAAAACACCTT+TGG | - | chr5.3:66788623-66788642 | MS.gene80820:intron | 30.0% |
| !!! | ATTTGGGTGTGCATTTTTTA+TGG | - | chr5.3:66789394-66789413 | MS.gene80820:intron | 30.0% |
| !!! | TCGACTATTTTTACTTCCTA+AGG | - | chr5.3:66789931-66789950 | MS.gene80820:intron | 30.0% |
| AAACAATCAAAACCTCTAGC+AGG | + | chr5.3:66790846-66790865 | None:intergenic | 35.0% | |
| AAAGAAGAAGCTCTTCTCAA+GGG | + | chr5.3:66790723-66790742 | None:intergenic | 35.0% | |
| AAAGAAGGATCTGTCTTCTA+AGG | - | chr5.3:66791891-66791910 | MS.gene80820:intron | 35.0% | |
| AACAAACAAGAATGAGAGGA+AGG | + | chr5.3:66788995-66789014 | None:intergenic | 35.0% | |
| AACGAGTACCACAATTTGTA+TGG | - | chr5.3:66790996-66791015 | MS.gene80820:intron | 35.0% | |
| AATCGGTGGAAAATATCTAC+AGG | - | chr5.3:66791649-66791668 | MS.gene80820:intron | 35.0% | |
| ACGTAAACATCACAAGAACA+TGG | - | chr5.3:66788874-66788893 | MS.gene80820:intron | 35.0% | |
| AGGGAAAAATGATGTGATCT+TGG | - | chr5.3:66789220-66789239 | MS.gene80820:intron | 35.0% | |
| ATAGTTGTGTGCATTTGTTC+TGG | - | chr5.3:66791543-66791562 | MS.gene80820:CDS | 35.0% | |
| ATCTCAGAAAGATTCGTTGA+TGG | - | chr5.3:66789435-66789454 | MS.gene80820:intron | 35.0% | |
| ATGCACACTACTATGTCTTA+TGG | - | chr5.3:66791572-66791591 | MS.gene80820:CDS | 35.0% | |
| ATGTAATTGGACATTCAGGA+AGG | + | chr5.3:66788428-66788447 | None:intergenic | 35.0% | |
| ATTACCTGCATCACAATATG+AGG | + | chr5.3:66790185-66790204 | None:intergenic | 35.0% | |
| ATTGGACTTGAACAGTAATG+TGG | - | chr5.3:66789361-66789380 | MS.gene80820:intron | 35.0% | |
| CAAAATTACTTGGAGAGAAC+TGG | - | chr5.3:66792236-66792255 | MS.gene80820:intron | 35.0% | |
| CAAATCCAAAACGAAACCAT+TGG | + | chr5.3:66792086-66792105 | None:intergenic | 35.0% | |
| CCAAGTAAAATTTGGCAATG+AGG | + | chr5.3:66791041-66791060 | None:intergenic | 35.0% | |
| CTACCGAAAAATATTTCCAC+AGG | + | chr5.3:66791606-66791625 | None:intergenic | 35.0% | |
| CTACTCACGAACAAAATATG+AGG | + | chr5.3:66791300-66791319 | None:intergenic | 35.0% | |
| CTCCTTTACACTTATTCCAA+AGG | + | chr5.3:66788642-66788661 | None:intergenic | 35.0% | |
| CTCTAAGTACAAAGACAGAT+TGG | - | chr5.3:66790348-66790367 | MS.gene80820:intron | 35.0% | |
| CTGAAAATTGGCCATCATTA+AGG | + | chr5.3:66791851-66791870 | None:intergenic | 35.0% | |
| CTGGAAAAAAATGTCAGGTA+TGG | - | chr5.3:66792255-66792274 | MS.gene80820:intron | 35.0% | |
| GAGAACTGGAAAAAAATGTC+AGG | - | chr5.3:66792250-66792269 | MS.gene80820:intron | 35.0% | |
| GATGCTGTTGTTACATTTGA+TGG | - | chr5.3:66789661-66789680 | MS.gene80820:intron | 35.0% | |
| GATGTGTAAATTTGGTACTG+TGG | - | chr5.3:66790493-66790512 | MS.gene80820:intron | 35.0% | |
| GCAAGATTGTCTATAACCAT+TGG | - | chr5.3:66792134-66792153 | MS.gene80820:intron | 35.0% | |
| GGAATGACATTATGCGAAAA+TGG | + | chr5.3:66792314-66792333 | None:intergenic | 35.0% | |
| GTTATAGACAATCTTGCAGA+AGG | + | chr5.3:66792131-66792150 | None:intergenic | 35.0% | |
| GTTCAAGTCCAATTTGGATA+AGG | + | chr5.3:66789354-66789373 | None:intergenic | 35.0% | |
| GTTCCAAAGACTAATCAACT+TGG | - | chr5.3:66788338-66788357 | MS.gene80820:CDS | 35.0% | |
| TCAAAAGATGCAGATGAAGA+TGG | - | chr5.3:66791946-66791965 | MS.gene80820:intron | 35.0% | |
| TCTCACAAACTAACCTTCAA+GGG | - | chr5.3:66789201-66789220 | MS.gene80820:intron | 35.0% | |
| TCTTCATGAGTAACAAGAGT+GGG | + | chr5.3:66790758-66790777 | None:intergenic | 35.0% | |
| TGATGCAGGTAATTTCTCAT+GGG | - | chr5.3:66790192-66790211 | MS.gene80820:intron | 35.0% | |
| TGTAATTGGACATTCAGGAA+GGG | + | chr5.3:66788427-66788446 | None:intergenic | 35.0% | |
| TTAATGACTGGGACTTAGAT+TGG | - | chr5.3:66788534-66788553 | MS.gene80820:CDS | 35.0% | |
| TTACCTGCATCACAATATGA+GGG | + | chr5.3:66790184-66790203 | None:intergenic | 35.0% | |
| TTAGAAGACAGATCCTTCTT+TGG | + | chr5.3:66791892-66791911 | None:intergenic | 35.0% | |
| TTCCATTTCAGGAAATATGC+TGG | - | chr5.3:66789130-66789149 | MS.gene80820:intron | 35.0% | |
| TTCTGACTAGATTGACTATG+TGG | - | chr5.3:66790872-66790891 | MS.gene80820:CDS | 35.0% | |
| TTGGACTTGAACAGTAATGT+GGG | - | chr5.3:66789362-66789381 | MS.gene80820:intron | 35.0% | |
| TTTGTTGATATACAACCCTG+AGG | - | chr5.3:66790411-66790430 | MS.gene80820:CDS | 35.0% | |
| ! | AAATTTGTGTTACTCTGCAG+GGG | - | chr5.3:66789824-66789843 | MS.gene80820:CDS | 35.0% |
| ! | AATTTTATGGAAGAGACAGG+GGG | - | chr5.3:66788259-66788278 | MS.gene80820:CDS | 35.0% |
| ! | AGAAATTTGTGTTACTCTGC+AGG | - | chr5.3:66789822-66789841 | MS.gene80820:CDS | 35.0% |
| ! | AGCGTTTGAAATTTCTCCAA+TGG | + | chr5.3:66792153-66792172 | None:intergenic | 35.0% |
| ! | AGTTTGTCCTTTTCGAATAG+GGG | + | chr5.3:66790156-66790175 | None:intergenic | 35.0% |
| ! | ATGCTGATATTTTCAGCAAG+GGG | - | chr5.3:66788898-66788917 | MS.gene80820:intron | 35.0% |
| ! | CCTCATTGCCAAATTTTACT+TGG | - | chr5.3:66791038-66791057 | MS.gene80820:intron | 35.0% |
| ! | CTTTTCTCAAATGGAAAGAG+AGG | - | chr5.3:66792038-66792057 | MS.gene80820:intron | 35.0% |
| ! | GAAATTTGTGTTACTCTGCA+GGG | - | chr5.3:66789823-66789842 | MS.gene80820:CDS | 35.0% |
| ! | GAATCAATATTCATCGGTTG+TGG | + | chr5.3:66792483-66792502 | None:intergenic | 35.0% |
| ! | GAATTTTATGGAAGAGACAG+GGG | - | chr5.3:66788258-66788277 | MS.gene80820:CDS | 35.0% |
| ! | GGAATTTTATGGAAGAGACA+GGG | - | chr5.3:66788257-66788276 | MS.gene80820:CDS | 35.0% |
| ! | GTATGCTGATATTTTCAGCA+AGG | - | chr5.3:66788896-66788915 | MS.gene80820:intron | 35.0% |
| ! | TAAAATGTTACCTCGGTGTA+AGG | + | chr5.3:66789696-66789715 | None:intergenic | 35.0% |
| ! | TAAAGAAGCAAAGCATCAAG+AGG | + | chr5.3:66788763-66788782 | None:intergenic | 35.0% |
| ! | TATTTCTGACGCCTTAATGA+TGG | - | chr5.3:66791837-66791856 | MS.gene80820:intron | 35.0% |
| ! | TGACAACTCCTAAATTTTCC+AGG | + | chr5.3:66790647-66790666 | None:intergenic | 35.0% |
| ! | TGGGGAGAAGTTGATTTAAA+TGG | - | chr5.3:66788689-66788708 | MS.gene80820:intron | 35.0% |
| ! | TTGGTGTTCAGATCAAAGAA+GGG | - | chr5.3:66788357-66788376 | MS.gene80820:intron | 35.0% |
| ! | TTTGGCAGGTTTCTGAAAAT+TGG | + | chr5.3:66791863-66791882 | None:intergenic | 35.0% |
| ! | TTTTCAGAAACCTGCCAAAA+AGG | - | chr5.3:66791864-66791883 | MS.gene80820:intron | 35.0% |
| ! | TTTTCCAGGCTTAGTAACTT+TGG | + | chr5.3:66790633-66790652 | None:intergenic | 35.0% |
| !! | AAGAGCATCAATCTTCAGAA+AGG | + | chr5.3:66790033-66790052 | None:intergenic | 35.0% |
| !! | ACACCAAGTTGATTAGTCTT+TGG | + | chr5.3:66788344-66788363 | None:intergenic | 35.0% |
| !! | ATCCTTCTTTGGTTCCTTTT+TGG | + | chr5.3:66791881-66791900 | None:intergenic | 35.0% |
| !! | CAACCGATGAATATTGATTC+AGG | - | chr5.3:66792483-66792502 | MS.gene80820:CDS | 35.0% |
| !! | CAATGGTTTCGTTTTGGATT+TGG | - | chr5.3:66792084-66792103 | MS.gene80820:CDS | 35.0% |
| !! | CACCTTTGGAATAAGTGTAA+AGG | - | chr5.3:66788637-66788656 | MS.gene80820:intron | 35.0% |
| !! | TCACATCATTTTTCCCTTGA+AGG | + | chr5.3:66789217-66789236 | None:intergenic | 35.0% |
| !!! | CACTTATTCCAAAGGTGTTT+TGG | + | chr5.3:66788634-66788653 | None:intergenic | 35.0% |
| AAGAAGAAGCTCTTCTCAAG+GGG | + | chr5.3:66790722-66790741 | None:intergenic | 40.0% | |
| AATTCCAACACCCAGTTTGT+TGG | - | chr5.3:66789478-66789497 | MS.gene80820:intron | 40.0% | |
| ACACTACTATGTCTTATGGC+AGG | - | chr5.3:66791576-66791595 | MS.gene80820:CDS | 40.0% | |
| ACCTGAACATGCAGTTCAAA+GGG | - | chr5.3:66791097-66791116 | MS.gene80820:CDS | 40.0% | |
| ACGGATGTGGCAAAATTACT+TGG | - | chr5.3:66792226-66792245 | MS.gene80820:intron | 40.0% | |
| AGAAGCAACTTTCTGTTAGC+GGG | - | chr5.3:66788660-66788679 | MS.gene80820:intron | 40.0% | |
| AGATGTAAAGAGTAGAGGTG+AGG | + | chr5.3:66791813-66791832 | None:intergenic | 40.0% | |
| AGCCAGCATATTTCCTGAAA+TGG | + | chr5.3:66789135-66789154 | None:intergenic | 40.0% | |
| AGTTACACCTGTCATTCTTG+CGG | - | chr5.3:66789861-66789880 | MS.gene80820:intron | 40.0% | |
| ATACTGTGGTGAACACTTCA+TGG | + | chr5.3:66790592-66790611 | None:intergenic | 40.0% | |
| ATGAAGAGAAAGACAGCATG+TGG | + | chr5.3:66789030-66789049 | None:intergenic | 40.0% | |
| ATGAATCTGACAGTGCCTAA+CGG | - | chr5.3:66792508-66792527 | MS.gene80820:CDS | 40.0% | |
| ATTCACTGGATTTCGTGATC+AGG | - | chr5.3:66788391-66788410 | MS.gene80820:intron | 40.0% | |
| CACTACTATGTCTTATGGCA+GGG | - | chr5.3:66791577-66791596 | MS.gene80820:CDS | 40.0% | |
| CACTCTTGTTACTCATGAAG+AGG | - | chr5.3:66790757-66790776 | MS.gene80820:intron | 40.0% | |
| CAGATTGGAGTTGTCGTATA+AGG | - | chr5.3:66790363-66790382 | MS.gene80820:intron | 40.0% | |
| CATTTCTGTGTTGCATTCAC+AGG | - | chr5.3:66791438-66791457 | MS.gene80820:intron | 40.0% | |
| CTCTTCATGAGTAACAAGAG+TGG | + | chr5.3:66790759-66790778 | None:intergenic | 40.0% | |
| GAAAACACAGGAAAGCGAAA+AGG | + | chr5.3:66791507-66791526 | None:intergenic | 40.0% | |
| GAAAGAAGAAGCTCTTCTCA+AGG | + | chr5.3:66790724-66790743 | None:intergenic | 40.0% | |
| GAGAAGCAACTTTCTGTTAG+CGG | - | chr5.3:66788659-66788678 | MS.gene80820:intron | 40.0% | |
| GCATCAATCTTCAGAAAGGT+TGG | + | chr5.3:66790029-66790048 | None:intergenic | 40.0% | |
| GGGTTGTTCTACAAATTCAC+TGG | - | chr5.3:66788377-66788396 | MS.gene80820:intron | 40.0% | |
| GGTAATTTCTCATGGGTTTC+TGG | - | chr5.3:66790199-66790218 | MS.gene80820:intron | 40.0% | |
| GTCTCACAAACTAACCTTCA+AGG | - | chr5.3:66789200-66789219 | MS.gene80820:intron | 40.0% | |
| GTGATGCAGGTAATTTCTCA+TGG | - | chr5.3:66790191-66790210 | MS.gene80820:intron | 40.0% | |
| TACCTGAACATGCAGTTCAA+AGG | - | chr5.3:66791096-66791115 | MS.gene80820:CDS | 40.0% | |
| TGAAGATTGATGCTCTTCTC+TGG | - | chr5.3:66790036-66790055 | MS.gene80820:CDS | 40.0% | |
| TGCCAAAAAGGAACCAAAGA+AGG | - | chr5.3:66791876-66791895 | MS.gene80820:intron | 40.0% | |
| TGGCAACAAACAAGAATGAG+AGG | + | chr5.3:66788999-66789018 | None:intergenic | 40.0% | |
| TTGAACTGCATGTTCAGGTA+AGG | + | chr5.3:66791096-66791115 | None:intergenic | 40.0% | |
| ! | AATGTGGGCTGTGGTTAATT+TGG | - | chr5.3:66789377-66789396 | MS.gene80820:intron | 40.0% |
| ! | ATGTGGGCTGTGGTTAATTT+GGG | - | chr5.3:66789378-66789397 | MS.gene80820:intron | 40.0% |
| ! | ATTTTATGGAAGAGACAGGG+GGG | - | chr5.3:66788260-66788279 | MS.gene80820:CDS | 40.0% |
| ! | CTAATAACGACGAAGGTATG+TGG | + | chr5.3:66790125-66790144 | None:intergenic | 40.0% |
| ! | GAGGCATCACACGATAATAA+AGG | + | chr5.3:66791794-66791813 | None:intergenic | 40.0% |
| ! | GGGAATTTTATGGAAGAGAC+AGG | - | chr5.3:66788256-66788275 | MS.gene80820:CDS | 40.0% |
| ! | GTTTGTCCTTTTCGAATAGG+GGG | + | chr5.3:66790155-66790174 | None:intergenic | 40.0% |
| ! | TCATCTCTGAAAGCTGAAGA+TGG | - | chr5.3:66790686-66790705 | MS.gene80820:intron | 40.0% |
| ! | TTTGTCCTTTTCGAATAGGG+GGG | + | chr5.3:66790154-66790173 | None:intergenic | 40.0% |
| !! | AATATGCTGGCTTTCATGGT+TGG | - | chr5.3:66789143-66789162 | MS.gene80820:intron | 40.0% |
| !! | ACAAACTGGGTGTTGGAATT+CGG | + | chr5.3:66789478-66789497 | None:intergenic | 40.0% |
| !! | AGGAAATATGCTGGCTTTCA+TGG | - | chr5.3:66789139-66789158 | MS.gene80820:intron | 40.0% |
| !! | CTTGGTGTTCAGATCAAAGA+AGG | - | chr5.3:66788356-66788375 | MS.gene80820:intron | 40.0% |
| !! | TATTACGAAAGAGGTGCTCT+TGG | + | chr5.3:66790968-66790987 | None:intergenic | 40.0% |
| !! | TTCTTTGGTTCCTTTTTGGC+AGG | + | chr5.3:66791877-66791896 | None:intergenic | 40.0% |
| AATCCAGACATTCCCCTCTT+GGG | + | chr5.3:66792012-66792031 | None:intergenic | 45.0% | |
| ACTGGGACTTAGATTGGCAT+TGG | - | chr5.3:66788540-66788559 | MS.gene80820:CDS | 45.0% | |
| AGACAAGCCACGTAATACTG+TGG | + | chr5.3:66790606-66790625 | None:intergenic | 45.0% | |
| AGTTTGTAACAGCTTGCAGC+TGG | - | chr5.3:66789314-66789333 | MS.gene80820:intron | 45.0% | |
| ATCACCAACAAACTGGGTGT+TGG | + | chr5.3:66789485-66789504 | None:intergenic | 45.0% | |
| CCTCTTTCTCATCACCACTT+TGG | + | chr5.3:66791751-66791770 | None:intergenic | 45.0% | |
| GATACATACAGCCAGTTGAC+AGG | + | chr5.3:66790088-66790107 | None:intergenic | 45.0% | |
| GATTCTGATGCTAGCCAAAG+TGG | - | chr5.3:66791734-66791753 | MS.gene80820:intron | 45.0% | |
| GGTCTCCTACTGATGATTCT+GGG | - | chr5.3:66791705-66791724 | MS.gene80820:intron | 45.0% | |
| GTAACAAGAGTGGGAGGTTT+AGG | + | chr5.3:66790749-66790768 | None:intergenic | 45.0% | |
| GTACCCTCATATTGTGATGC+AGG | - | chr5.3:66790178-66790197 | MS.gene80820:intron | 45.0% | |
| GTATTGCAATCCTTACACCG+AGG | - | chr5.3:66789683-66789702 | MS.gene80820:intron | 45.0% | |
| GTCGAACTACACTGCTATAC+TGG | + | chr5.3:66789916-66789935 | None:intergenic | 45.0% | |
| GTCGAGACTAATAACGACGA+AGG | + | chr5.3:66790132-66790151 | None:intergenic | 45.0% | |
| GTCTCCTACTGATGATTCTG+GGG | - | chr5.3:66791706-66791725 | MS.gene80820:intron | 45.0% | |
| GTGTGTTGAATGTACAGCTG+AGG | - | chr5.3:66792380-66792399 | MS.gene80820:CDS | 45.0% | |
| GTGTTCACCACAGTATTACG+TGG | - | chr5.3:66790596-66790615 | MS.gene80820:CDS | 45.0% | |
| TCATGAGTAACAAGAGTGGG+AGG | + | chr5.3:66790755-66790774 | None:intergenic | 45.0% | |
| TGAAGACTTCGTTGCCGAAA+AGG | - | chr5.3:66791673-66791692 | MS.gene80820:intron | 45.0% | |
| TGAAGATGAAAGTGACGAGG+AGG | - | chr5.3:66791237-66791256 | MS.gene80820:CDS | 45.0% | |
| TGAATGTACAGCTGAGGAGA+AGG | - | chr5.3:66792386-66792405 | MS.gene80820:CDS | 45.0% | |
| TGACAACTTCTCCTGTCAAC+TGG | - | chr5.3:66790074-66790093 | MS.gene80820:CDS | 45.0% | |
| TGCATGATATCACCTGCTAG+AGG | - | chr5.3:66790831-66790850 | MS.gene80820:CDS | 45.0% | |
| TGGTGAAGATGAAAGTGACG+AGG | - | chr5.3:66791234-66791253 | MS.gene80820:CDS | 45.0% | |
| TGTGATCTTGGAGTTCCATG+TGG | - | chr5.3:66789232-66789251 | MS.gene80820:intron | 45.0% | |
| TTCCATGTGGATGACACAAC+TGG | - | chr5.3:66789245-66789264 | MS.gene80820:intron | 45.0% | |
| TTGCCGAAAAGGACGATGAA+GGG | - | chr5.3:66791684-66791703 | MS.gene80820:intron | 45.0% | |
| TTTCTGATGCGCTCAAGATG+TGG | + | chr5.3:66791208-66791227 | None:intergenic | 45.0% | |
| ! | ACAGTATTACGTGGCTTGTC+TGG | - | chr5.3:66790605-66790624 | MS.gene80820:CDS | 45.0% |
| ! | AGACCCTTCATCGTCCTTTT+CGG | + | chr5.3:66791690-66791709 | None:intergenic | 45.0% |
| ! | AGCAGAGAGAGCTTGTTTGA+TGG | - | chr5.3:66789050-66789069 | MS.gene80820:CDS | 45.0% |
| ! | AGCTTTCGAAGTGCCTTTAG+CGG | - | chr5.3:66789175-66789194 | MS.gene80820:intron | 45.0% |
| ! | AGTATTACGTGGCTTGTCTG+GGG | - | chr5.3:66790607-66790626 | MS.gene80820:CDS | 45.0% |
| ! | ATTTTCCCAAGCATCCCTCA+AGG | + | chr5.3:66790444-66790463 | None:intergenic | 45.0% |
| ! | CAGTATTACGTGGCTTGTCT+GGG | - | chr5.3:66790606-66790625 | MS.gene80820:CDS | 45.0% |
| ! | CCAAAGTGGTGATGAGAAAG+AGG | - | chr5.3:66791748-66791767 | MS.gene80820:intron | 45.0% |
| ! | TTGAACAGTAATGTGGGCTG+TGG | - | chr5.3:66789368-66789387 | MS.gene80820:intron | 45.0% |
| !! | GGGTGTTGGAATTCGGTATA+TGG | + | chr5.3:66789471-66789490 | None:intergenic | 45.0% |
| !! | TCGTTTTGGATTTGGGTGTG+TGG | - | chr5.3:66792092-66792111 | MS.gene80820:CDS | 45.0% |
| AACAAACTCACCTGAGCAGG+TGG | + | chr5.3:66789517-66789536 | None:intergenic | 50.0% | |
| ACAAACTCACCTGAGCAGGT+GGG | + | chr5.3:66789516-66789535 | None:intergenic | 50.0% | |
| ACCAACTACTGGTGTGGCTA+AGG | - | chr5.3:66791150-66791169 | MS.gene80820:intron | 50.0% | |
| ACCTTAGCCACACCAGTAGT+TGG | + | chr5.3:66791154-66791173 | None:intergenic | 50.0% | |
| AGAGAAAGACAGCATGTGGC+TGG | + | chr5.3:66789026-66789045 | None:intergenic | 50.0% | |
| AGCCACACCAGTAGTTGGTT+GGG | + | chr5.3:66791149-66791168 | None:intergenic | 50.0% | |
| AGGATCCAAATGCACCCAAG+AGG | - | chr5.3:66791995-66792014 | MS.gene80820:intron | 50.0% | |
| AGTGAGCGTGACATGGATGA+AGG | - | chr5.3:66788316-66788335 | MS.gene80820:CDS | 50.0% | |
| ATAATGTCTGTGGCCGACGT+TGG | - | chr5.3:66789625-66789644 | MS.gene80820:intron | 50.0% | |
| ATTCCCCTCTTGGGTGCATT+TGG | + | chr5.3:66792003-66792022 | None:intergenic | 50.0% | |
| ATTCTTGCGGCTTCAAGGAC+AGG | - | chr5.3:66789874-66789893 | MS.gene80820:intron | 50.0% | |
| CTCCAGTTGTGTCATCCACA+TGG | + | chr5.3:66789250-66789269 | None:intergenic | 50.0% | |
| CTGACATAGTGAGCGTGACA+TGG | - | chr5.3:66788309-66788328 | MS.gene80820:CDS | 50.0% | |
| CTGTCATTCTTGCGGCTTCA+AGG | - | chr5.3:66789869-66789888 | MS.gene80820:intron | 50.0% | |
| CTGTTCCTTGAGGGATGCTT+GGG | - | chr5.3:66790436-66790455 | MS.gene80820:CDS | 50.0% | |
| CTTGAAGCCGCAAGAATGAC+AGG | + | chr5.3:66789871-66789890 | None:intergenic | 50.0% | |
| GAATCCAGACATTCCCCTCT+TGG | + | chr5.3:66792013-66792032 | None:intergenic | 50.0% | |
| GAATTTGAGCGACATGCTGC+TGG | - | chr5.3:66790894-66790913 | MS.gene80820:intron | 50.0% | |
| GAGCGCATCAGAAATGAAGC+TGG | - | chr5.3:66791214-66791233 | MS.gene80820:intron | 50.0% | |
| GATCCAAATGCACCCAAGAG+GGG | - | chr5.3:66791997-66792016 | MS.gene80820:intron | 50.0% | |
| GCCCTTTGAACTGCATGTTC+AGG | + | chr5.3:66791101-66791120 | None:intergenic | 50.0% | |
| GGATCCAAATGCACCCAAGA+GGG | - | chr5.3:66791996-66792015 | MS.gene80820:intron | 50.0% | |
| GGGTCTCCTACTGATGATTC+TGG | - | chr5.3:66791704-66791723 | MS.gene80820:intron | 50.0% | |
| GGTGTGGCTAAGGTTCTTGA+GGG | - | chr5.3:66791160-66791179 | MS.gene80820:intron | 50.0% | |
| GTGAACAAACTCACCTGAGC+AGG | + | chr5.3:66789520-66789539 | None:intergenic | 50.0% | |
| GTTGCCGAAAAGGACGATGA+AGG | - | chr5.3:66791683-66791702 | MS.gene80820:intron | 50.0% | |
| GTTTGTGAGACGTCCGCTAA+AGG | + | chr5.3:66789191-66789210 | None:intergenic | 50.0% | |
| TAGCCACACCAGTAGTTGGT+TGG | + | chr5.3:66791150-66791169 | None:intergenic | 50.0% | |
| TCTGCCCCAGAATCATCAGT+AGG | + | chr5.3:66791713-66791732 | None:intergenic | 50.0% | |
| TGAAAATTGCCCACCTGCTC+AGG | - | chr5.3:66789504-66789523 | MS.gene80820:CDS | 50.0% | |
| TGACACAACTGGAGCCAATG+AGG | - | chr5.3:66789256-66789275 | MS.gene80820:intron | 50.0% | |
| TGGTGTGGCTAAGGTTCTTG+AGG | - | chr5.3:66791159-66791178 | MS.gene80820:intron | 50.0% | |
| TTCACCTCCAACACCAACGT+CGG | + | chr5.3:66789641-66789660 | None:intergenic | 50.0% | |
| ! | CTCAGGTGAGTTTGTTCACG+AGG | - | chr5.3:66789521-66789540 | MS.gene80820:CDS | 50.0% |
| ! | TTCTGTTAGCGGGCGCAATT+GGG | - | chr5.3:66788670-66788689 | MS.gene80820:intron | 50.0% |
| ! | TTTCTGTTAGCGGGCGCAAT+TGG | - | chr5.3:66788669-66788688 | MS.gene80820:intron | 50.0% |
| ACACGAGCCTTTGCCTCGTA+TGG | + | chr5.3:66792414-66792433 | None:intergenic | 55.0% | |
| CCTCAAGGAACAGCACCTCA+GGG | + | chr5.3:66790429-66790448 | None:intergenic | 55.0% | |
| CTCGACCCCCCTATTCGAAA+AGG | - | chr5.3:66790146-66790165 | MS.gene80820:CDS | 55.0% | |
| GAAGGAGCCATACGAGGCAA+AGG | - | chr5.3:66792404-66792423 | MS.gene80820:CDS | 55.0% | |
| GCTGTTCCTTGAGGGATGCT+TGG | - | chr5.3:66790435-66790454 | MS.gene80820:CDS | 55.0% | |
| GGAGATGCCCAACCAACTAC+TGG | - | chr5.3:66791139-66791158 | MS.gene80820:intron | 55.0% | |
| GGGGCCAAAGTTACTAAGCC+TGG | - | chr5.3:66790626-66790645 | MS.gene80820:intron | 55.0% | |
| TCTTATGGCAGGGTTCCCTG+TGG | - | chr5.3:66791587-66791606 | MS.gene80820:CDS | 55.0% | |
| TGAGGAGAAGGAGCCATACG+AGG | - | chr5.3:66792398-66792417 | MS.gene80820:CDS | 55.0% | |
| TGCCCAACCAACTACTGGTG+TGG | - | chr5.3:66791144-66791163 | MS.gene80820:intron | 55.0% | |
| TTATGGAAGAGACAGGGGGG+TGG | - | chr5.3:66788263-66788282 | MS.gene80820:CDS | 55.0% | |
| TTGAGCGACATGCTGCTGGT+GGG | - | chr5.3:66790898-66790917 | MS.gene80820:intron | 55.0% | |
| TTTGAGCGACATGCTGCTGG+TGG | - | chr5.3:66790897-66790916 | MS.gene80820:intron | 55.0% | |
| ! | TCTGTTAGCGGGCGCAATTG+GGG | - | chr5.3:66788671-66788690 | MS.gene80820:intron | 55.0% |
| !! | CCTGAGGTGCTGTTCCTTGA+GGG | - | chr5.3:66790427-66790446 | MS.gene80820:CDS | 55.0% |
| CCCTCAAGGAACAGCACCTC+AGG | + | chr5.3:66790430-66790449 | None:intergenic | 60.0% | |
| GACAGCATGTGGCTGGCAAG+TGG | + | chr5.3:66789019-66789038 | None:intergenic | 60.0% | |
| GCACCCAAGAGGGGAATGTC+TGG | - | chr5.3:66792006-66792025 | MS.gene80820:intron | 60.0% | |
| TCTGTGGCCGACGTTGGTGT+TGG | - | chr5.3:66789631-66789650 | MS.gene80820:intron | 60.0% | |
| !! | CCCTGAGGTGCTGTTCCTTG+AGG | - | chr5.3:66790426-66790445 | MS.gene80820:CDS | 60.0% |
| !! | GTGGCCGACGTTGGTGTTGG+AGG | - | chr5.3:66789634-66789653 | MS.gene80820:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 66788227 | 66792527 | 66788227 | ID=MS.gene80820 |
| chr5.3 | mRNA | 66788227 | 66792527 | 66788227 | ID=MS.gene80820.t1;Parent=MS.gene80820 |
| chr5.3 | exon | 66792342 | 66792527 | 66792342 | ID=MS.gene80820.t1.exon1;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66792342 | 66792527 | 66792342 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66792044 | 66792149 | 66792044 | ID=MS.gene80820.t1.exon2;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66792044 | 66792149 | 66792044 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66791477 | 66791613 | 66791477 | ID=MS.gene80820.t1.exon3;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66791477 | 66791613 | 66791477 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66791229 | 66791312 | 66791229 | ID=MS.gene80820.t1.exon4;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66791229 | 66791312 | 66791229 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66791050 | 66791144 | 66791050 | ID=MS.gene80820.t1.exon5;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66791050 | 66791144 | 66791050 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66790802 | 66790910 | 66790802 | ID=MS.gene80820.t1.exon6;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66790802 | 66790910 | 66790802 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66790555 | 66790641 | 66790555 | ID=MS.gene80820.t1.exon7;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66790555 | 66790641 | 66790555 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66790370 | 66790462 | 66790370 | ID=MS.gene80820.t1.exon8;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66790370 | 66790462 | 66790370 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66789976 | 66790173 | 66789976 | ID=MS.gene80820.t1.exon9;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66789976 | 66790173 | 66789976 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66789727 | 66789872 | 66789727 | ID=MS.gene80820.t1.exon10;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66789727 | 66789872 | 66789727 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66789496 | 66789643 | 66789496 | ID=MS.gene80820.t1.exon11;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66789496 | 66789643 | 66789496 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66788985 | 66789083 | 66788985 | ID=MS.gene80820.t1.exon12;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66788985 | 66789083 | 66788985 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66788695 | 66788883 | 66788695 | ID=MS.gene80820.t1.exon13;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66788695 | 66788883 | 66788695 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66788483 | 66788561 | 66788483 | ID=MS.gene80820.t1.exon14;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66788483 | 66788561 | 66788483 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| chr5.3 | exon | 66788227 | 66788357 | 66788227 | ID=MS.gene80820.t1.exon15;Parent=MS.gene80820.t1 |
| chr5.3 | CDS | 66788227 | 66788357 | 66788227 | ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1 |
| Gene Sequence |
| Protein sequence |
