AlfalfaGEDB | MS.gene80820

M. sativa cultivar XinJiangDaYe / MS.gene80820

KEGG: K09272
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0097159 GO:0110165 GO:1901363
PFAM: PF00505.22 PF03531.17 PF08512.15 PF17292.5

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80820.t1	XP_003616631.1	96	630	23	1	1	628	19	648	9.40E-303	1048.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80820.t1	O04235	87.1	629	75	3	1	628	19	642	4.5e-277	954.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80820.t1	G7KH07	96.0	630	23	1	1	628	19	648	6.8e-303	1048.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene80820.t1	TR	HMG

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene80820	MS.gene64420	PPI
MS.gene80820	MS.gene46640	PPI
MS.gene80820	MS.gene045233	PPI
MS.gene80820	MS.gene025425	PPI
MS.gene80820	MS.gene95527	PPI
MS.gene80820	MS.gene066551	PPI
MS.gene80820	MS.gene68113	PPI
MS.gene80820	MS.gene84498	PPI
MS.gene80820	MS.gene041066	PPI
MS.gene80820	MS.gene91756	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80820.t1	MTR_5g082570	97.937	630	11	1	1	628	19	648	0.0	1267
MS.gene80820.t1	MTR_1g022345	88.854	628	67	1	1	628	19	643	0.0	1075
MS.gene80820.t1	MTR_3g108380	72.581	62	17	0	524	585	30	91	4.44e-18	80.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80820.t1	AT3G28730	75.436	631	147	5	1	627	19	645	0.0	895
MS.gene80820.t1	AT3G51880	45.122	82	44	1	531	611	41	122	9.96e-11	61.6

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Find 138 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAAGCTCTTCTCAA+GGG	0.568660	5.3:+66790012	None:intergenic
AAAGAAGGATCTGTCTTCTA+AGG	0.353142	5.3:-66788841	MS.gene80820:CDS
AAATTTAGGAGTTGTCAAGA+TGG	0.550659	5.3:-66790082	MS.gene80820:CDS
AACAAACTCACCTGAGCAGG+TGG	0.540462	5.3:+66791218	None:intergenic
AACGAGTACCACAATTTGTA+TGG	0.395792	5.3:-66789736	MS.gene80820:CDS
AAGAAGAAGCTCTTCTCAAG+GGG	0.618644	5.3:+66790013	None:intergenic
AATATAAAGAAAGCTAATCC+TGG	0.438071	5.3:-66788539	MS.gene80820:CDS
AATATGCTGGCTTTCATGGT+TGG	0.520470	5.3:-66791589	MS.gene80820:CDS
AATCCAGACATTCCCCTCTT+GGG	0.456255	5.3:+66788723	None:intergenic
AATGAATCTGACAGTGCCTA+AGG	0.547696	5.3:-66788225	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTAGGAGTTGTCAAGA+TGG	-	chr5.3:66790650-66790669	MS.gene80820:intron	30.0%
ACAAAAGATGTAAAGAGTAG+AGG	+	chr5.3:66791818-66791837	None:intergenic	30.0%
ACAACTTAGTAACACATGAT+AGG	+	chr5.3:66792353-66792372	None:intergenic	30.0%
ACTAGTTGCCAAGTAAAATT+TGG	+	chr5.3:66791049-66791068	None:intergenic	30.0%
ATAGTTCGAAACTGATTATG+TGG	-	chr5.3:66790288-66790307	MS.gene80820:intron	30.0%
ATATGCAATACAGAAAACAC+AGG	+	chr5.3:66791519-66791538	None:intergenic	30.0%
ATGTGTAAATTTGGTACTGT+GGG	-	chr5.3:66790494-66790513	MS.gene80820:intron	30.0%
ATTACTGTTCAAGTCCAATT+TGG	+	chr5.3:66789360-66789379	None:intergenic	30.0%
CAGATGTAGATATTAATGAC+TGG	-	chr5.3:66788522-66788541	MS.gene80820:CDS	30.0%
CATTGGAAAATATTTGAGCA+TGG	-	chr5.3:66791382-66791401	MS.gene80820:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	66788227	66792527	66788227	ID=MS.gene80820
chr5.3	mRNA	66788227	66792527	66788227	ID=MS.gene80820.t1;Parent=MS.gene80820
chr5.3	exon	66792342	66792527	66792342	ID=MS.gene80820.t1.exon1;Parent=MS.gene80820.t1
chr5.3	CDS	66792342	66792527	66792342	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66792044	66792149	66792044	ID=MS.gene80820.t1.exon2;Parent=MS.gene80820.t1
chr5.3	CDS	66792044	66792149	66792044	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66791477	66791613	66791477	ID=MS.gene80820.t1.exon3;Parent=MS.gene80820.t1
chr5.3	CDS	66791477	66791613	66791477	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66791229	66791312	66791229	ID=MS.gene80820.t1.exon4;Parent=MS.gene80820.t1
chr5.3	CDS	66791229	66791312	66791229	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66791050	66791144	66791050	ID=MS.gene80820.t1.exon5;Parent=MS.gene80820.t1
chr5.3	CDS	66791050	66791144	66791050	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66790802	66790910	66790802	ID=MS.gene80820.t1.exon6;Parent=MS.gene80820.t1
chr5.3	CDS	66790802	66790910	66790802	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66790555	66790641	66790555	ID=MS.gene80820.t1.exon7;Parent=MS.gene80820.t1
chr5.3	CDS	66790555	66790641	66790555	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66790370	66790462	66790370	ID=MS.gene80820.t1.exon8;Parent=MS.gene80820.t1
chr5.3	CDS	66790370	66790462	66790370	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66789976	66790173	66789976	ID=MS.gene80820.t1.exon9;Parent=MS.gene80820.t1
chr5.3	CDS	66789976	66790173	66789976	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66789727	66789872	66789727	ID=MS.gene80820.t1.exon10;Parent=MS.gene80820.t1
chr5.3	CDS	66789727	66789872	66789727	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66789496	66789643	66789496	ID=MS.gene80820.t1.exon11;Parent=MS.gene80820.t1
chr5.3	CDS	66789496	66789643	66789496	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66788985	66789083	66788985	ID=MS.gene80820.t1.exon12;Parent=MS.gene80820.t1
chr5.3	CDS	66788985	66789083	66788985	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66788695	66788883	66788695	ID=MS.gene80820.t1.exon13;Parent=MS.gene80820.t1
chr5.3	CDS	66788695	66788883	66788695	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66788483	66788561	66788483	ID=MS.gene80820.t1.exon14;Parent=MS.gene80820.t1
chr5.3	CDS	66788483	66788561	66788483	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1
chr5.3	exon	66788227	66788357	66788227	ID=MS.gene80820.t1.exon15;Parent=MS.gene80820.t1
chr5.3	CDS	66788227	66788357	66788227	ID=cds.MS.gene80820.t1;Parent=MS.gene80820.t1

Gene Sequence

>MS.gene80820

AATCCGGGGCAGATAAAAATATATTCTGGGGGAATTTTATGGAAGAGACAGGGGGGTGGTAAATCAATCGAAGTTGACAAAGCTGACATAGTGAGCGTGACATGGATGAAGGTTCCAAAGACTAATCAACTTGGTGTTCAGATCAAAGAAGGGTTGTTCTACAAATTCACTGGATTTCGTGATCAGGTTACTTTCTGCCCTTCCTGAATGTCCAATTACATATATTTGATGTAGACTAAGGAATTCAAATATCTGGTTTGATTTCTTATGTTTGTTCCTTTGATTAACATTTTGACAGATGTAGATATTAATGACTGGGACTTAGATTGGCATTGGCATCACATACCATTTCTTATGTTGATGTTTTCTATTTTGCAGGACGTTGTAAGTTTGACCAGTTTTTTCCAAAACACCTTTGGAATAAGTGTAAAGGAGAAGCAACTTTCTGTTAGCGGGCGCAATTGGGGAGAAGTTGATTTAAATGGTCAGTGATGTTTACATGAACTGACTATTGTGGTGAAATTGATATCTTTCCTCTTGATGCTTTGCTTCTTTATCAGACATCTCTCTTTGTCGTCATTACTTGTTATACTATGAGAAAATTTGTTTTGAGAGAAAAAAATATTTCACACTGTGTTCTGTATAACACGTAAACATCACAAGAACATGGTATGCTGATATTTTCAGCAAGGGGTAGCACTCTACTAAGATATTCAGTTTATACCATTCATCTTATACTGAAGATTGTGGTTTTTCAAACAAGGACCTTCCTCTCATTCTTGTTTGTTGCCACTTGCCAGCCACATGCTGTCTTTCTCTTCATAGCAGAGAGAGCTTGTTTGATGGAATTTTTTTACTACTTTTATAAAGTTCTAATACTGGTCGTCATTCTTATCCTTATATTTCCATTTCAGGAAATATGCTGGCTTTCATGGTTGGCTCAAAGCAAGCTTTCGAAGTGCCTTTAGCGGACGTCTCACAAACTAACCTTCAAGGGAAAAATGATGTGATCTTGGAGTTCCATGTGGATGACACAACTGGAGCCAATGAGGTATATCTATAGAATCTTCTGAGTTTTAACGAGTACAGTTTGTAACAGCTTGCAGCTGGCTAAAGAAAATCTTCCTTATCCAAATTGGACTTGAACAGTAATGTGGGCTGTGGTTAATTTGGGTGTGCATTTTTTATGGTCTAATATTATTCATATGATCTCAGAAAGATTCGTTGATGGAGATAAGTTTCCATATACCGAATTCCAACACCCAGTTTGTTGGTGATGAAAATTGCCCACCTGCTCAGGTGAGTTTGTTCACGAGGTTAATAATAAATTTCATGTTAATAAATTATATGTAAGCTAAGTTTGCATAATATTTTTCGTATCAGGTTTTCCGTAATAAAATAATGTCTGTGGCCGACGTTGGTGTTGGAGGTGAAGATGCTGTTGTTACATTTGATGGTATTGCAATCCTTACACCGAGGTAACATTTTAAATACTCGGACATGTTCATTTAACTATTTTCTGTTTCTTATCACTGCTTTACATACTTCTGATTTCATTTACAACCTTTCAAGAGAAAGATCAAATATCTAATGATAGAAATTTGTGTTACTCTGCAGGGGAAGATATAGTGTCGAGTTACACCTGTCATTCTTGCGGCTTCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTAGTTCGACTATTTTTACTTCCTAAGGTTTATTTTATGATCTATTGCTTTCATTTCACTGATATTAGTTTTCATATTAGCTATTAATATAGTTTATCAGCCAACCTTTCTGAAGATTGATGCTCTTCTCTGGACTTGTTAAGTATACTGACAACTTCTCCTGTCAACTGGCTGTATGTATCTGTAGTCTAATCAGCCACATACCTTCGTCGTTATTAGTCTCGACCCCCCTATTCGAAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGGTAATTTCTCATGGGTTTCTGGTTTACTAATTTAGGTGATACATATTTTGCGTTATTCTGAAGCTAACATTGTTTTGCTCATTTCTGTATAGTTCGAAACTGATTATGTGGTTGAAAGTGAATTGGCATTAAGTGAAGATCTGTATAACTCTAAGTACAAAGACAGATTGGAGTTGTCGTATAAGGTATTGCCTAAACTGTTGATTATTGATTTGTTGATATACAACCCTGAGGTGCTGTTCCTTGAGGGATGCTTGGGAAAATAGAAACAGCATAATTTTAGTTGATTGATTGATGTGTAAATTTGGTACTGTGGGTTGTGCATATTGCATCTGATGCAATGCAATAGTTGATATGTTTCATTTACAATTCAATAATCAGGGGCTTATCCATGAAGTGTTCACCACAGTATTACGTGGCTTGTCTGGGGCCAAAGTTACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTCTGAAAGCTGAAGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTGTTACTCATGAAGAGGTGAAATTTGAGTTCTGTTTACTGACTATCATATATTAAATACTGGTTGACATGCATGATATCACCTGCTAGAGGTTTTGATTGTTTCGTTGTTTCTGACTAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGGTCAAATATGCATTATTTTGACCTACTTATCAGACTAAAATCTGACCAAGAGCACCTCTTTCGTAATATTCAGAGAAACGAGTACCACAATTTGTATGGTTTTATCAGGTAAATGTTACCTCATTGCCAAATTTTACTTGGCAACTAGTTGTTTGTCATATAAACAACTCATTCCTTACCTGAACATGCAGTTCAAAGGGCTTGAAAATTATGCATTTAGGAGATGCCCAACCAACTACTGGTGTGGCTAAGGTTCTTGAGGGTGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATCAGAAATGAAGCTGGTGAAGATGAAAGTGACGAGGAGGTGCCTAATCTATATTTGATATAATTTTTAATTTTTATCCTCATATTTTGTTCGTGAGTAGCATTTAGTATATTTGCGTTCTAATTTAAGTAAACAAGGATCACATTAATTTATATCCAACAACATTGGAAAATATTTGAGCATGGAAAAAACATGAAGTGATGTTTGACGTGTGCTTACATTTCTGTGTTGCATTCACAGGCTTGCATTTCTGTTTTGCAGCCAGACTATTGTTTATTATCTATCCTTTTCGCTTTCCTGTGTTTTCTGTATTGCATATTATTATAGTTGTGTGCATTTGTTCTGGACTTATATGCACACTACTATGTCTTATGGCAGGGTTCCCTGTGGAAATATTTTTCGGTAGTCTTGTTTGCTTTTGTATATATTAATCGGTGGAAAATATCTACAGGATGAAGACTTCGTTGCCGAAAAGGACGATGAAGGGTCTCCTACTGATGATTCTGGGGCAGATGATTCTGATGCTAGCCAAAGTGGTGATGAGAAAGAGGCAAGCGATTTGTTTTATGTTCCTTTATTATCGTGTGATGCCTCACCTCTACTCTTTACATCTTTTGTATTTCTGACGCCTTAATGATGGCCAATTTTCAGAAACCTGCCAAAAAGGAACCAAAGAAGGATCTGTCTTCTAAGGCATCTGCTTCTACTTCTACTTCTAAGAAGAAATCAAAAGATGCAGATGAAGATGGCAAAAAGAAAAAACAGAAGAAGAAAAAGGATCCAAATGCACCCAAGAGGGGAATGTCTGGATTCATGTTCTTTTCTCAAATGGAAAGAGAGGTGCGTTTTATGTTATATATATACCAATGGTTTCGTTTTGGATTTGGGTGTGTGGAAATGATCATTTCCCTTCTGCAAGATTGTCTATAACCATTGGAGAAATTTCAAACGCTTTTTCTTTTTTTAATGACAGAATATAAAGAAAGCTAATCCTGGGATTTCATTTACGGATGTGGCAAAATTACTTGGAGAGAACTGGAAAAAAATGTCAGGTATGGCTGTTTGACAGTAGTTTCATTTTATATGCAGTTCCATTTTCGCATAATGTCATTCCCGATCACTGATAAAATCCTATCATGTGTTACTAAGTTGTCATTTCTGTGTGTTGAATGTACAGCTGAGGAGAAGGAGCCATACGAGGCAAAGGCTCGTGTTGATAAAAAACGTTACGAGGATGAGAAGATTGTCTACAATGCTCAACCACAACCGATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA

Protein sequence

>MS.gene80820.t1

NPGQIKIYSGGILWKRQGGGKSIEVDKADIVSVTWMKVPKTNQLGVQIKEGLFYKFTGFRDQDVVSLTSFFQNTFGISVKEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVPLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENCPPAQVFRNKIMSVADVGVGGEDAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVESELALSEDLYNSKYKDRLELSYKGLIHEVFTTVLRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLVTHEEIDYVEFERHAAGGSNMHYFDLLIRLKSDQEHLFRNIQRNEYHNLYGFISSKGLKIMHLGDAQPTTGVAKVLEGDDDDAVDPHLERIRNEAGEDESDEEDEDFVAEKDDEGSPTDDSGADDSDASQSGDEKEKPAKKEPKKDLSSKASASTSTSKKKSKDADEDGKKKKQKKKKDPNAPKRGMSGFMFFSQMERENIKKANPGISFTDVAKLLGENWKKMSAEEKEPYEAKARVDKKRYEDEKIVYNAQPQPMNIDSGNESDSA