Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025499.t1 | XP_013443637.1 | 98.3 | 415 | 6 | 1 | 1 | 414 | 1 | 415 | 6.00E-221 | 776.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025499.t1 | Q8VXY7 | 67.1 | 419 | 132 | 3 | 2 | 414 | 32 | 450 | 6.6e-152 | 538.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025499.t1 | A0A072TJQ1 | 98.3 | 415 | 6 | 1 | 1 | 414 | 1 | 415 | 4.3e-221 | 776.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59641 | MS.gene025499 | PPI |
| MS.gene025499 | MS.gene036759 | PPI |
| MS.gene036758 | MS.gene025499 | PPI |
| MS.gene025499 | MS.gene62397 | PPI |
| MS.gene59944 | MS.gene025499 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025499.t1 | MTR_0003s0470 | 99.036 | 415 | 3 | 1 | 1 | 414 | 1 | 415 | 0.0 | 821 |
| MS.gene025499.t1 | MTR_3g462280 | 81.311 | 412 | 74 | 2 | 6 | 414 | 12 | 423 | 0.0 | 661 |
| MS.gene025499.t1 | MTR_4g114710 | 48.649 | 407 | 191 | 5 | 12 | 414 | 6 | 398 | 5.56e-121 | 357 |
| MS.gene025499.t1 | MTR_0008s0170 | 32.843 | 408 | 248 | 8 | 25 | 414 | 11 | 410 | 3.30e-59 | 198 |
| MS.gene025499.t1 | MTR_2g011600 | 32.629 | 426 | 255 | 10 | 11 | 414 | 4 | 419 | 3.20e-58 | 196 |
| MS.gene025499.t1 | MTR_0008s0130 | 33.577 | 411 | 241 | 13 | 25 | 414 | 11 | 410 | 1.26e-56 | 192 |
| MS.gene025499.t1 | MTR_2g011580 | 33.247 | 385 | 229 | 8 | 50 | 414 | 2 | 378 | 4.88e-52 | 179 |
| MS.gene025499.t1 | MTR_4g050990 | 33.090 | 411 | 243 | 10 | 25 | 414 | 11 | 410 | 2.09e-50 | 175 |
| MS.gene025499.t1 | MTR_2g089520 | 33.090 | 411 | 243 | 10 | 25 | 414 | 11 | 410 | 2.09e-50 | 175 |
| MS.gene025499.t1 | MTR_2g047968 | 34.458 | 415 | 232 | 12 | 25 | 414 | 11 | 410 | 5.50e-50 | 175 |
| MS.gene025499.t1 | MTR_2g011600 | 32.979 | 376 | 220 | 10 | 62 | 414 | 2 | 368 | 3.33e-46 | 163 |
| MS.gene025499.t1 | MTR_1g071120 | 32.132 | 333 | 198 | 9 | 26 | 340 | 53 | 375 | 2.48e-41 | 151 |
| MS.gene025499.t1 | MTR_8g007285 | 29.348 | 368 | 233 | 8 | 67 | 414 | 2 | 362 | 1.16e-28 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025499.t1 | AT1G70330 | 67.064 | 419 | 132 | 3 | 2 | 414 | 32 | 450 | 0.0 | 551 |
| MS.gene025499.t1 | AT1G02630 | 49.231 | 390 | 184 | 4 | 25 | 414 | 14 | 389 | 1.48e-129 | 379 |
| MS.gene025499.t1 | AT1G02630 | 42.821 | 390 | 165 | 5 | 25 | 414 | 14 | 345 | 6.49e-100 | 301 |
| MS.gene025499.t1 | AT4G05120 | 33.735 | 415 | 234 | 12 | 25 | 414 | 14 | 412 | 4.91e-54 | 185 |
| MS.gene025499.t1 | AT4G05120 | 33.735 | 415 | 234 | 12 | 25 | 414 | 14 | 412 | 4.91e-54 | 185 |
| MS.gene025499.t1 | AT4G05110 | 33.415 | 410 | 242 | 11 | 25 | 414 | 14 | 412 | 1.80e-53 | 184 |
| MS.gene025499.t1 | AT4G05110 | 33.415 | 410 | 242 | 11 | 25 | 414 | 14 | 412 | 1.80e-53 | 184 |
| MS.gene025499.t1 | AT4G05110 | 33.415 | 410 | 242 | 11 | 25 | 414 | 14 | 412 | 3.13e-53 | 184 |
| MS.gene025499.t1 | AT4G05130 | 32.039 | 412 | 245 | 12 | 25 | 414 | 14 | 412 | 3.50e-49 | 172 |
| MS.gene025499.t1 | AT3G09990 | 30.496 | 423 | 264 | 8 | 12 | 414 | 1 | 413 | 5.15e-48 | 169 |
| MS.gene025499.t1 | AT1G61630 | 30.147 | 408 | 253 | 7 | 29 | 414 | 15 | 412 | 9.73e-48 | 168 |
| MS.gene025499.t1 | AT4G05140 | 31.429 | 420 | 249 | 12 | 21 | 414 | 7 | 413 | 1.34e-47 | 168 |
Find 78 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTATTATTGCTTGGTTT+TGG | 0.145627 | 4.4:-63039669 | MS.gene025499:CDS |
| ATCTCTGTCCGGAAGAATTT+TGG | 0.169442 | 4.4:+63039844 | None:intergenic |
| GTTGGTGCTGTTGGACTTTC+CGG | 0.196933 | 4.4:-63042254 | MS.gene025499:CDS |
| TACATGCTCGTTGGTCTCTT+TGG | 0.274505 | 4.4:-63042434 | MS.gene025499:CDS |
| CTCGGCATGCTGTAACTTTA+CGG | 0.281643 | 4.4:+63039741 | None:intergenic |
| ATGCGATCAACGCTTGCTTC+AGG | 0.323304 | 4.4:+63042470 | None:intergenic |
| AATAGGTTATGTATGCTAAA+TGG | 0.326421 | 4.4:+63042567 | None:intergenic |
| ACCTATTTCATCCTCGGTTT+CGG | 0.330159 | 4.4:-63042551 | MS.gene025499:CDS |
| TTCATCGTAGTACTTCATAA+TGG | 0.339715 | 4.4:+63040215 | None:intergenic |
| CACAATACTGACTTGTCTCT+TGG | 0.344547 | 4.4:-63039815 | MS.gene025499:CDS |
| AAACATTAAAGCAAGTAATA+AGG | 0.355362 | 4.4:+63039986 | None:intergenic |
| ACAATACTGACTTGTCTCTT+GGG | 0.363279 | 4.4:-63039814 | MS.gene025499:CDS |
| ATAAATCTCATGCTTATGTT+AGG | 0.364457 | 4.4:-63042385 | MS.gene025499:CDS |
| GTCCTTTGACTGGATCTGTT+TGG | 0.371216 | 4.4:-63040155 | MS.gene025499:CDS |
| TATGTTGCTGTTGGTGCTGT+TGG | 0.372892 | 4.4:-63042263 | MS.gene025499:CDS |
| GGTTCTATTGTTGGATCTGC+TGG | 0.374532 | 4.4:-63042209 | MS.gene025499:CDS |
| CTTCTGGTTCTATTATTGCT+TGG | 0.384734 | 4.4:-63039675 | MS.gene025499:CDS |
| CTACGATGAACTAAAGATTC+AGG | 0.394767 | 4.4:-63040202 | MS.gene025499:CDS |
| GTGACACTCGCAATATTTCC+AGG | 0.397334 | 4.4:-63040063 | MS.gene025499:CDS |
| TGCTTATGTTAGGATTAACT+TGG | 0.399833 | 4.4:-63042375 | MS.gene025499:CDS |
| ACCGAAACCGAGGATGAAAT+AGG | 0.411794 | 4.4:+63042550 | None:intergenic |
| ATTGCTGGCACTGCTGCTTC+TGG | 0.415429 | 4.4:-63042155 | MS.gene025499:intron |
| GTTTCGGTTATTTACTTCCA+TGG | 0.415754 | 4.4:-63042535 | MS.gene025499:CDS |
| TATATGCAAGCTGTCATTGC+TGG | 0.420137 | 4.4:-63042170 | MS.gene025499:CDS |
| TTGGTGCAGGGTTCTATTGT+TGG | 0.427009 | 4.4:-63042218 | MS.gene025499:CDS |
| TCATCGTAGTACTTCATAAT+GGG | 0.429570 | 4.4:+63040216 | None:intergenic |
| TGTCTCTTGGGGCTTACAAA+TGG | 0.431350 | 4.4:-63039802 | MS.gene025499:CDS |
| TGTCCACTCTCAACTTCTTA+AGG | 0.432985 | 4.4:-63040025 | MS.gene025499:CDS |
| AAGCAAGTAATAAGGAGAAC+TGG | 0.433685 | 4.4:+63039994 | None:intergenic |
| TACACGGTCCAAAATTCTTC+CGG | 0.434751 | 4.4:-63039852 | MS.gene025499:CDS |
| CTGTTTGGAGATCAACTGTA+TGG | 0.436346 | 4.4:-63040140 | MS.gene025499:CDS |
| TGTTGCTGATGCATTGGTGC+AGG | 0.441747 | 4.4:-63042231 | MS.gene025499:CDS |
| TGCGATCAACGCTTGCTTCA+GGG | 0.446495 | 4.4:+63042471 | None:intergenic |
| GAGTGCAAATCTCTACTTTG+CGG | 0.451493 | 4.4:-63040295 | MS.gene025499:CDS |
| TACATAACCTATTTCATCCT+CGG | 0.462014 | 4.4:-63042557 | MS.gene025499:CDS |
| TTCCGGTGTTGCTGATGCAT+TGG | 0.464340 | 4.4:-63042237 | MS.gene025499:CDS |
| TACAGCATGCCGAGACTGCC+GGG | 0.486013 | 4.4:-63039732 | MS.gene025499:CDS |
| AAGAAGTGTTGAATCGGAAT+CGG | 0.503135 | 4.4:+63042640 | None:intergenic |
| TGGTAGAAGAAGTGTTGAAT+CGG | 0.504943 | 4.4:+63042634 | None:intergenic |
| TTACAGCATGCCGAGACTGC+CGG | 0.506823 | 4.4:-63039733 | MS.gene025499:CDS |
| GCTGTTGTTTACATGCTCGT+TGG | 0.512487 | 4.4:-63042443 | MS.gene025499:CDS |
| TTTATGTTAAGGGTCGGGTC+GGG | 0.513730 | 4.4:-63042301 | MS.gene025499:CDS |
| GCTAAATGGTATTTGTCTTG+TGG | 0.527798 | 4.4:+63042581 | None:intergenic |
| ACAGCTTGCATATACCTCTC+AGG | 0.532551 | 4.4:+63042179 | None:intergenic |
| GACGACAGCAGTCCTTTGAC+TGG | 0.532845 | 4.4:-63040165 | MS.gene025499:CDS |
| GTGGGAACAATCAAGTGGTA+TGG | 0.534444 | 4.4:-63040111 | MS.gene025499:CDS |
| TGTGATTATGTTCCTATGCA+TGG | 0.534710 | 4.4:-63040265 | MS.gene025499:CDS |
| AAATCATCAATACACTGGTA+AGG | 0.536010 | 4.4:+63039776 | None:intergenic |
| GTTTACACACAAGATGTCTC+TGG | 0.544585 | 4.4:-63040327 | MS.gene025499:CDS |
| CAATACTGACTTGTCTCTTG+GGG | 0.545865 | 4.4:-63039813 | MS.gene025499:CDS |
| ACTCTCAACTTCTTAAGGAC+TGG | 0.553604 | 4.4:-63040020 | MS.gene025499:CDS |
| CACCAATGCATCAGCAACAC+CGG | 0.559726 | 4.4:+63042235 | None:intergenic |
| CAAGAAGGTATACTGCAGTA+AGG | 0.559942 | 4.4:+63039944 | None:intergenic |
| AGACAAGTCAGTATTGTGAC+AGG | 0.564239 | 4.4:+63039820 | None:intergenic |
| ACATCCTCTGTAATGTAACC+TGG | 0.566880 | 4.4:+63040045 | None:intergenic |
| GTTGTTGCTGAAGATGATGA+TGG | 0.568202 | 4.4:+63042614 | None:intergenic |
| CTCTTCTTAGGATGCCTACA+CGG | 0.571460 | 4.4:-63039868 | MS.gene025499:CDS |
| TTGTGACAGGAATCTCTGTC+CGG | 0.573239 | 4.4:+63039833 | None:intergenic |
| GCTTATGTTAGGATTAACTT+GGG | 0.574619 | 4.4:-63042374 | MS.gene025499:CDS |
| GTTGCTGATGCATTGGTGCA+GGG | 0.577108 | 4.4:-63042230 | MS.gene025499:CDS |
| CTGCTGGTGAGTTGCCTGAG+AGG | 0.582234 | 4.4:-63042193 | MS.gene025499:CDS |
| GAATAACACACTCACAATCC+CGG | 0.584989 | 4.4:+63039714 | None:intergenic |
| ATCAACTGTATGGGATACTG+TGG | 0.588210 | 4.4:-63040130 | MS.gene025499:CDS |
| AGCTAAAATCATCAATACAC+TGG | 0.598738 | 4.4:+63039771 | None:intergenic |
| GCTGTGATGAATGCGTTCCA+TGG | 0.604002 | 4.4:+63042518 | None:intergenic |
| CTCCAAACAGATCCAGTCAA+AGG | 0.607721 | 4.4:+63040153 | None:intergenic |
| CATTGTACAAAACCATGCAT+AGG | 0.607766 | 4.4:+63040253 | None:intergenic |
| TGTTTGGAGATCAACTGTAT+GGG | 0.608553 | 4.4:-63040139 | MS.gene025499:CDS |
| ACTCACAATCCCGGCAGTCT+CGG | 0.612996 | 4.4:+63039723 | None:intergenic |
| TGTAGGCATCCTAAGAAGAG+AGG | 0.621915 | 4.4:+63039871 | None:intergenic |
| AAGATAAGAGAAGTAATCAA+CGG | 0.623151 | 4.4:+63042496 | None:intergenic |
| ATTTCCAGGTTACATTACAG+AGG | 0.630377 | 4.4:-63040049 | MS.gene025499:CDS |
| GTAGGCATCCTAAGAAGAGA+GGG | 0.638243 | 4.4:+63039872 | None:intergenic |
| AAAGATTCAGGCAGTCGCTG+TGG | 0.644804 | 4.4:-63040190 | MS.gene025499:CDS |
| AGTCCTTAAGAAGTTGAGAG+TGG | 0.645129 | 4.4:+63040022 | None:intergenic |
| TCAACTGTATGGGATACTGT+GGG | 0.661944 | 4.4:-63040129 | MS.gene025499:CDS |
| GAAGTAAATAACCGAAACCG+AGG | 0.675912 | 4.4:+63042540 | None:intergenic |
| ATACTGTGGGAACAATCAAG+TGG | 0.700888 | 4.4:-63040116 | MS.gene025499:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTAAAATTATTAT+AGG | - | chr4.4:63041044-63041063 | MS.gene025499:intron | 0.0% |
| !! | GTTCAATAAAAAAAAAAAAA+AGG | + | chr4.4:63041872-63041891 | None:intergenic | 10.0% |
| !!! | AAATATCAGATTTTATTTTA+GGG | + | chr4.4:63041441-63041460 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTATTGAACTT+TGG | - | chr4.4:63041874-63041893 | MS.gene025499:intron | 10.0% |
| !! | TAAATAATGATTTCTCAATT+TGG | - | chr4.4:63040726-63040745 | MS.gene025499:intron | 15.0% |
| !! | TTGAATATAATTACAATTGT+TGG | - | chr4.4:63040830-63040849 | MS.gene025499:intron | 15.0% |
| !!! | ATTGATGTTTTTTATGTTAA+GGG | - | chr4.4:63039999-63040018 | MS.gene025499:CDS | 15.0% |
| !!! | CAAATATCAGATTTTATTTT+AGG | + | chr4.4:63041442-63041461 | None:intergenic | 15.0% |
| !!! | TCAGTTTTAATTTTTTACTT+AGG | - | chr4.4:63040598-63040617 | MS.gene025499:intron | 15.0% |
| !! | AAAATAGTAACAAAGTTAAG+GGG | + | chr4.4:63040579-63040598 | None:intergenic | 20.0% |
| !! | AAACATTAAAGCAAGTAATA+AGG | + | chr4.4:63042327-63042346 | None:intergenic | 20.0% |
| !! | ACATAAAAAACATCAATCAA+AGG | + | chr4.4:63039996-63040015 | None:intergenic | 20.0% |
| !! | ATAAATTGAAAAACACTTGA+TGG | + | chr4.4:63040877-63040896 | None:intergenic | 20.0% |
| !! | ATGTGATTATATTCAATCAT+TGG | - | chr4.4:63041015-63041034 | MS.gene025499:intron | 20.0% |
| !! | CAAAATAGTAACAAAGTTAT+GGG | + | chr4.4:63040194-63040213 | None:intergenic | 20.0% |
| !! | CATTACCATAAAAGTAAAAA+GGG | + | chr4.4:63040782-63040801 | None:intergenic | 20.0% |
| !! | GAAAATAGTAACAAAGTTAA+GGG | + | chr4.4:63040580-63040599 | None:intergenic | 20.0% |
| !! | TAAATTGAAAAACACTTGAT+GGG | + | chr4.4:63040876-63040895 | None:intergenic | 20.0% |
| !! | TATTTGTAACTTATATTCCT+AGG | - | chr4.4:63041456-63041475 | MS.gene025499:intron | 20.0% |
| !! | TCAAAATAGTAACAAAGTTA+TGG | + | chr4.4:63040195-63040214 | None:intergenic | 20.0% |
| !! | TCATTACCATAAAAGTAAAA+AGG | + | chr4.4:63040783-63040802 | None:intergenic | 20.0% |
| !! | TGAAAATAGTAACAAAGTTA+AGG | + | chr4.4:63040581-63040600 | None:intergenic | 20.0% |
| !! | TTACAACAACAATAAAAGAA+AGG | + | chr4.4:63041619-63041638 | None:intergenic | 20.0% |
| !! | TTGATATCATTATAGATTGA+AGG | - | chr4.4:63040936-63040955 | MS.gene025499:intron | 20.0% |
| !!! | ATTTTGAGTTTATTTGTTGT+TGG | - | chr4.4:63040208-63040227 | MS.gene025499:CDS | 20.0% |
| !!! | GATTGATGTTTTTTATGTTA+AGG | - | chr4.4:63039998-63040017 | MS.gene025499:CDS | 20.0% |
| !!! | TCATTTTCTCAAATTATCAT+CGG | + | chr4.4:63040282-63040301 | None:intergenic | 20.0% |
| !!! | TTTCTTTTATTGTTGTTGTA+AGG | - | chr4.4:63041618-63041637 | MS.gene025499:intron | 20.0% |
| ! | AAACAAAACATGATATCAGA+TGG | + | chr4.4:63041759-63041778 | None:intergenic | 25.0% |
| ! | AAGATAAGAGAAGTAATCAA+CGG | + | chr4.4:63039817-63039836 | None:intergenic | 25.0% |
| ! | AAGCTCTTGTTAAAAAAACT+TGG | - | chr4.4:63041108-63041127 | MS.gene025499:intron | 25.0% |
| ! | AATAGGTTATGTATGCTAAA+TGG | + | chr4.4:63039746-63039765 | None:intergenic | 25.0% |
| ! | AATCTTGAGTAACTTGATTT+AGG | - | chr4.4:63041800-63041819 | MS.gene025499:intron | 25.0% |
| ! | ATAAATCTCATGCTTATGTT+AGG | - | chr4.4:63039925-63039944 | MS.gene025499:CDS | 25.0% |
| ! | ATCATATATGATGTGAGAAT+GGG | - | chr4.4:63040498-63040517 | MS.gene025499:intron | 25.0% |
| ! | ATGTACACACCTATAATAAA+AGG | + | chr4.4:63041214-63041233 | None:intergenic | 25.0% |
| ! | TGTACACACCTATAATAAAA+GGG | + | chr4.4:63041213-63041232 | None:intergenic | 25.0% |
| ! | TGTTAAAATAGTTGGAAGAT+AGG | - | chr4.4:63040525-63040544 | MS.gene025499:intron | 25.0% |
| !! | AAAAAGAAATTCAAGTTCCT+AGG | + | chr4.4:63041476-63041495 | None:intergenic | 25.0% |
| !! | AAAAATGCTTAGGTTTTCAA+AGG | + | chr4.4:63041521-63041540 | None:intergenic | 25.0% |
| !! | TTTTCCATACAAACTTACTA+AGG | + | chr4.4:63040664-63040683 | None:intergenic | 25.0% |
| !!! | AGTGTGTTATTCTTAGTTTT+CGG | - | chr4.4:63042607-63042626 | MS.gene025499:CDS | 25.0% |
| !!! | ATCAGATTTTATTTTAGGGA+AGG | + | chr4.4:63041437-63041456 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTATGTTAAGGGT+CGG | - | chr4.4:63040003-63040022 | MS.gene025499:CDS | 25.0% |
| !!! | TATGTATGTTTTTGACTTCA+GGG | - | chr4.4:63041924-63041943 | MS.gene025499:intron | 25.0% |
| !!! | TTATAGATTGAAGGAGTATT+TGG | - | chr4.4:63040945-63040964 | MS.gene025499:intron | 25.0% |
| !!! | TTATGTATGTTTTTGACTTC+AGG | - | chr4.4:63041923-63041942 | MS.gene025499:intron | 25.0% |
| !!! | TTCTATTATTGCTTGGTTTT+GGG | - | chr4.4:63042642-63042661 | MS.gene025499:CDS | 25.0% |
| !!! | TTTAATGTTTTTGACCTAGT+CGG | - | chr4.4:63042337-63042356 | MS.gene025499:CDS | 25.0% |
| AAATCATCAATACACTGGTA+AGG | + | chr4.4:63042537-63042556 | None:intergenic | 30.0% | |
| AACAAATACAAACACTACCA+TGG | + | chr4.4:63040470-63040489 | None:intergenic | 30.0% | |
| AAGATAGGTGAAGTTAGTTA+AGG | - | chr4.4:63040540-63040559 | MS.gene025499:intron | 30.0% | |
| ACAAATACAAACACTACCAT+GGG | + | chr4.4:63040469-63040488 | None:intergenic | 30.0% | |
| AGAACCTTAGTAAGTTTGTA+TGG | - | chr4.4:63040657-63040676 | MS.gene025499:intron | 30.0% | |
| AGCTAAAATCATCAATACAC+TGG | + | chr4.4:63042542-63042561 | None:intergenic | 30.0% | |
| CTAATATCTAGACATTGTTG+TGG | + | chr4.4:63040425-63040444 | None:intergenic | 30.0% | |
| GAGAATGCAAAAATTGCTAT+TGG | - | chr4.4:63042388-63042407 | MS.gene025499:CDS | 30.0% | |
| GAGTATGAAACTTTCCTATT+AGG | - | chr4.4:63041307-63041326 | MS.gene025499:intron | 30.0% | |
| GATCATATATGATGTGAGAA+TGG | - | chr4.4:63040497-63040516 | MS.gene025499:intron | 30.0% | |
| GCAATTATTACGAACAATCA+AGG | - | chr4.4:63041640-63041659 | MS.gene025499:intron | 30.0% | |
| GCTTATGTTAGGATTAACTT+GGG | - | chr4.4:63039936-63039955 | MS.gene025499:CDS | 30.0% | |
| TAACTTGATTTAGGTCTGAA+TGG | - | chr4.4:63041809-63041828 | MS.gene025499:intron | 30.0% | |
| TACATAACCTATTTCATCCT+CGG | - | chr4.4:63039753-63039772 | MS.gene025499:CDS | 30.0% | |
| TATAGGTGTGTACATATTAG+TGG | - | chr4.4:63041219-63041238 | MS.gene025499:intron | 30.0% | |
| TCATCGTAGTACTTCATAAT+GGG | + | chr4.4:63042097-63042116 | None:intergenic | 30.0% | |
| TGCTTATGTTAGGATTAACT+TGG | - | chr4.4:63039935-63039954 | MS.gene025499:CDS | 30.0% | |
| TTCATCGTAGTACTTCATAA+TGG | + | chr4.4:63042098-63042117 | None:intergenic | 30.0% | |
| ! | CAATTTTTGCATTCTCAAGA+AGG | + | chr4.4:63042384-63042403 | None:intergenic | 30.0% |
| ! | CAGCTTTTGTAAATATTCTC+AGG | + | chr4.4:63041964-63041983 | None:intergenic | 30.0% |
| ! | GTTCTATTATTGCTTGGTTT+TGG | - | chr4.4:63042641-63042660 | MS.gene025499:CDS | 30.0% |
| !! | CAAGACCCTTTTTACTTTTA+TGG | - | chr4.4:63040774-63040793 | MS.gene025499:intron | 30.0% |
| !!! | ATGTATGTTTTTGACTTCAG+GGG | - | chr4.4:63041925-63041944 | MS.gene025499:intron | 30.0% |
| !!! | TGTTTTTTATGTTAAGGGTC+GGG | - | chr4.4:63040004-63040023 | MS.gene025499:CDS | 30.0% |
| AAGCAAGTAATAAGGAGAAC+TGG | + | chr4.4:63042319-63042338 | None:intergenic | 35.0% | |
| AGGTTATGAGGGATTGAATT+GGG | - | chr4.4:63040399-63040418 | MS.gene025499:intron | 35.0% | |
| ATTTCCAGGTTACATTACAG+AGG | - | chr4.4:63042261-63042280 | MS.gene025499:CDS | 35.0% | |
| CAACAATAAAAGAAAGGCCT+AGG | + | chr4.4:63041613-63041632 | None:intergenic | 35.0% | |
| CATTGTACAAAACCATGCAT+AGG | + | chr4.4:63042060-63042079 | None:intergenic | 35.0% | |
| CCTTGTAGTTAGTATTACGT+GGG | - | chr4.4:63041568-63041587 | MS.gene025499:intron | 35.0% | |
| CTACGATGAACTAAAGATTC+AGG | - | chr4.4:63042108-63042127 | MS.gene025499:intron | 35.0% | |
| GAACAATCAAGGAGACAAAA+TGG | - | chr4.4:63041651-63041670 | MS.gene025499:intron | 35.0% | |
| GCTAAATGGTATTTGTCTTG+TGG | + | chr4.4:63039732-63039751 | None:intergenic | 35.0% | |
| GTTTCGGTTATTTACTTCCA+TGG | - | chr4.4:63039775-63039794 | MS.gene025499:CDS | 35.0% | |
| TAGGTTATGAGGGATTGAAT+TGG | - | chr4.4:63040398-63040417 | MS.gene025499:intron | 35.0% | |
| TGTCAGTGTCATGTCATATA+CGG | - | chr4.4:63040325-63040344 | MS.gene025499:CDS | 35.0% | |
| TGTGATTATGTTCCTATGCA+TGG | - | chr4.4:63042045-63042064 | MS.gene025499:intron | 35.0% | |
| TGTTTGGAGATCAACTGTAT+GGG | - | chr4.4:63042171-63042190 | MS.gene025499:CDS | 35.0% | |
| TTAAGTCATTCTCTTCTTCG+TGG | - | chr4.4:63041367-63041386 | MS.gene025499:intron | 35.0% | |
| TTGTGCTTCATAGGTTATGA+GGG | - | chr4.4:63040388-63040407 | MS.gene025499:intron | 35.0% | |
| ! | ATGCGGGATATTTTGTGTAT+AGG | - | chr4.4:63041183-63041202 | MS.gene025499:intron | 35.0% |
| ! | TAGGGTTGCCCTTTTATTAT+AGG | - | chr4.4:63041202-63041221 | MS.gene025499:intron | 35.0% |
| ! | TGCGGGATATTTTGTGTATA+GGG | - | chr4.4:63041184-63041203 | MS.gene025499:intron | 35.0% |
| ! | TGCTGTAACTTTACGGTTTT+AGG | + | chr4.4:63042565-63042584 | None:intergenic | 35.0% |
| ! | TGGGAGTGTGTTAAAATAGT+TGG | - | chr4.4:63040517-63040536 | MS.gene025499:intron | 35.0% |
| !! | AAGAAGTGTTGAATCGGAAT+CGG | + | chr4.4:63039673-63039692 | None:intergenic | 35.0% |
| !! | ACAATACTGACTTGTCTCTT+GGG | - | chr4.4:63042496-63042515 | MS.gene025499:CDS | 35.0% |
| !! | ATTTGGTGTTTGACATGTGT+TGG | - | chr4.4:63040962-63040981 | MS.gene025499:intron | 35.0% |
| !! | CTTCTGGTTCTATTATTGCT+TGG | - | chr4.4:63042635-63042654 | MS.gene025499:CDS | 35.0% |
| !! | GTTATTCTTAGTTTTCGGTC+TGG | - | chr4.4:63042612-63042631 | MS.gene025499:CDS | 35.0% |
| !! | TGGTAGAAGAAGTGTTGAAT+CGG | + | chr4.4:63039679-63039698 | None:intergenic | 35.0% |
| !! | TTGTTTTTCCCTCTCTTCTT+AGG | - | chr4.4:63042430-63042449 | MS.gene025499:CDS | 35.0% |
| !!! | TTTGTCTTGTGGTGCTTTTT+TGG | + | chr4.4:63039721-63039740 | None:intergenic | 35.0% |
| AATGTCAATGTTGTGTCCCA+TGG | - | chr4.4:63040450-63040469 | MS.gene025499:intron | 40.0% | |
| ACATCCTCTGTAATGTAACC+TGG | + | chr4.4:63042268-63042287 | None:intergenic | 40.0% | |
| ACCTATTTCATCCTCGGTTT+CGG | - | chr4.4:63039759-63039778 | MS.gene025499:CDS | 40.0% | |
| ACTCTCAACTTCTTAAGGAC+TGG | - | chr4.4:63042290-63042309 | MS.gene025499:CDS | 40.0% | |
| AGACAAGTCAGTATTGTGAC+AGG | + | chr4.4:63042493-63042512 | None:intergenic | 40.0% | |
| AGTCCTTAAGAAGTTGAGAG+TGG | + | chr4.4:63042291-63042310 | None:intergenic | 40.0% | |
| ATACTGTGGGAACAATCAAG+TGG | - | chr4.4:63042194-63042213 | MS.gene025499:CDS | 40.0% | |
| ATCAACTGTATGGGATACTG+TGG | - | chr4.4:63042180-63042199 | MS.gene025499:CDS | 40.0% | |
| CAATGAGACGAATGCCTAAT+AGG | + | chr4.4:63041324-63041343 | None:intergenic | 40.0% | |
| CCCACGTAATACTAACTACA+AGG | + | chr4.4:63041571-63041590 | None:intergenic | 40.0% | |
| CTGTTTGGAGATCAACTGTA+TGG | - | chr4.4:63042170-63042189 | MS.gene025499:CDS | 40.0% | |
| GAAGTAAATAACCGAAACCG+AGG | + | chr4.4:63039773-63039792 | None:intergenic | 40.0% | |
| GAATAACACACTCACAATCC+CGG | + | chr4.4:63042599-63042618 | None:intergenic | 40.0% | |
| GAGTGCAAATCTCTACTTTG+CGG | - | chr4.4:63042015-63042034 | MS.gene025499:intron | 40.0% | |
| GCCTTGTAGTTAGTATTACG+TGG | - | chr4.4:63041567-63041586 | MS.gene025499:intron | 40.0% | |
| GTCACAGCACAAAAATGCTT+AGG | + | chr4.4:63041531-63041550 | None:intergenic | 40.0% | |
| GTTGTGCTTCATAGGTTATG+AGG | - | chr4.4:63040387-63040406 | MS.gene025499:intron | 40.0% | |
| GTTGTTGCTGAAGATGATGA+TGG | + | chr4.4:63039699-63039718 | None:intergenic | 40.0% | |
| GTTTACACACAAGATGTCTC+TGG | - | chr4.4:63041983-63042002 | MS.gene025499:intron | 40.0% | |
| TACACGGTCCAAAATTCTTC+CGG | - | chr4.4:63042458-63042477 | MS.gene025499:CDS | 40.0% | |
| TATATGCAAGCTGTCATTGC+TGG | - | chr4.4:63040140-63040159 | MS.gene025499:CDS | 40.0% | |
| TCAACTGTATGGGATACTGT+GGG | - | chr4.4:63042181-63042200 | MS.gene025499:CDS | 40.0% | |
| TGTACAGTACACCAATTGCT+GGG | - | chr4.4:63041139-63041158 | MS.gene025499:intron | 40.0% | |
| TGTCCACTCTCAACTTCTTA+AGG | - | chr4.4:63042285-63042304 | MS.gene025499:CDS | 40.0% | |
| ! | AGAGATTTGCACTCTTTTGC+AGG | + | chr4.4:63042009-63042028 | None:intergenic | 40.0% |
| ! | ATCTCTGTCCGGAAGAATTT+TGG | + | chr4.4:63042469-63042488 | None:intergenic | 40.0% |
| ! | CAAGAAGGTATACTGCAGTA+AGG | + | chr4.4:63042369-63042388 | None:intergenic | 40.0% |
| ! | GTTTTGCATACCGACCAATT+AGG | - | chr4.4:63041727-63041746 | MS.gene025499:intron | 40.0% |
| ! | TTTTATGTTAAGGGTCGGGT+CGG | - | chr4.4:63040008-63040027 | MS.gene025499:CDS | 40.0% |
| ! | TTTTTGTGCTGTGACTGCTT+AGG | - | chr4.4:63041536-63041555 | MS.gene025499:intron | 40.0% |
| !! | AAGGTTCTTAAAAAGTGCCC+CGG | + | chr4.4:63040645-63040664 | None:intergenic | 40.0% |
| !! | CAATACTGACTTGTCTCTTG+GGG | - | chr4.4:63042497-63042516 | MS.gene025499:CDS | 40.0% |
| !! | CACAATACTGACTTGTCTCT+TGG | - | chr4.4:63042495-63042514 | MS.gene025499:CDS | 40.0% |
| !! | GGTCTTGCTAAGAAGTGTTT+GGG | + | chr4.4:63040761-63040780 | None:intergenic | 40.0% |
| ACAGCTTGCATATACCTCTC+AGG | + | chr4.4:63040134-63040153 | None:intergenic | 45.0% | |
| ACCGAAACCGAGGATGAAAT+AGG | + | chr4.4:63039763-63039782 | None:intergenic | 45.0% | |
| AGTGGCAATGTTGTGTCTGA+TGG | - | chr4.4:63041237-63041256 | MS.gene025499:intron | 45.0% | |
| ATGGACTCTGCCTAATTGGT+CGG | + | chr4.4:63041740-63041759 | None:intergenic | 45.0% | |
| CAAAATATCCCGCATACGCA+AGG | + | chr4.4:63041178-63041197 | None:intergenic | 45.0% | |
| CTCCAAACAGATCCAGTCAA+AGG | + | chr4.4:63042160-63042179 | None:intergenic | 45.0% | |
| CTCGGCATGCTGTAACTTTA+CGG | + | chr4.4:63042572-63042591 | None:intergenic | 45.0% | |
| CTCTTCTTAGGATGCCTACA+CGG | - | chr4.4:63042442-63042461 | MS.gene025499:CDS | 45.0% | |
| GGTCGGTATGCAAAACTACA+AGG | + | chr4.4:63041723-63041742 | None:intergenic | 45.0% | |
| GGTTCTATTGTTGGATCTGC+TGG | - | chr4.4:63040101-63040120 | MS.gene025499:CDS | 45.0% | |
| GTAGGCATCCTAAGAAGAGA+GGG | + | chr4.4:63042441-63042460 | None:intergenic | 45.0% | |
| GTCCTTTGACTGGATCTGTT+TGG | - | chr4.4:63042155-63042174 | MS.gene025499:intron | 45.0% | |
| GTGACACTCGCAATATTTCC+AGG | - | chr4.4:63042247-63042266 | MS.gene025499:CDS | 45.0% | |
| GTGGGAACAATCAAGTGGTA+TGG | - | chr4.4:63042199-63042218 | MS.gene025499:CDS | 45.0% | |
| GTGTACAGTACACCAATTGC+TGG | - | chr4.4:63041138-63041157 | MS.gene025499:intron | 45.0% | |
| TAGTATTACGTGGGCATCTC+AGG | - | chr4.4:63041577-63041596 | MS.gene025499:intron | 45.0% | |
| TCTCAGGTTTCTCTTTGCCT+AGG | - | chr4.4:63041593-63041612 | MS.gene025499:intron | 45.0% | |
| TCTGATGGTCGTGTTTGTGT+TGG | - | chr4.4:63041252-63041271 | MS.gene025499:intron | 45.0% | |
| TGGTGTTTGACATGTGTTGG+TGG | - | chr4.4:63040965-63040984 | MS.gene025499:intron | 45.0% | |
| TGTAGGCATCCTAAGAAGAG+AGG | + | chr4.4:63042442-63042461 | None:intergenic | 45.0% | |
| TGTCTCTTGGGGCTTACAAA+TGG | - | chr4.4:63042508-63042527 | MS.gene025499:CDS | 45.0% | |
| TTGGTGCAGGGTTCTATTGT+TGG | - | chr4.4:63040092-63040111 | MS.gene025499:CDS | 45.0% | |
| TTGTGACAGGAATCTCTGTC+CGG | + | chr4.4:63042480-63042499 | None:intergenic | 45.0% | |
| TTTATGTTAAGGGTCGGGTC+GGG | - | chr4.4:63040009-63040028 | MS.gene025499:CDS | 45.0% | |
| ! | GCTGTTGTTTACATGCTCGT+TGG | - | chr4.4:63039867-63039886 | MS.gene025499:CDS | 45.0% |
| ! | GGAAGAATTTTGGACCGTGT+AGG | + | chr4.4:63042459-63042478 | None:intergenic | 45.0% |
| ! | TACATGCTCGTTGGTCTCTT+TGG | - | chr4.4:63039876-63039895 | MS.gene025499:CDS | 45.0% |
| ! | TCAGATGGACTCTGCCTAAT+TGG | + | chr4.4:63041744-63041763 | None:intergenic | 45.0% |
| !! | GGGTCTTGCTAAGAAGTGTT+TGG | + | chr4.4:63040762-63040781 | None:intergenic | 45.0% |
| !! | GGTGGGTTTTATGTTGCTGT+TGG | - | chr4.4:63040038-63040057 | MS.gene025499:CDS | 45.0% |
| !! | TATGTTGCTGTTGGTGCTGT+TGG | - | chr4.4:63040047-63040066 | MS.gene025499:CDS | 45.0% |
| !! | TGAGGAGTGTTGTGCTTCAT+AGG | - | chr4.4:63040379-63040398 | MS.gene025499:intron | 45.0% |
| !! | TTAGTTTTCGGTCTGGCTTC+TGG | - | chr4.4:63042619-63042638 | MS.gene025499:CDS | 45.0% |
| AAAGATTCAGGCAGTCGCTG+TGG | - | chr4.4:63042120-63042139 | MS.gene025499:intron | 50.0% | |
| AAAGGTCACGGGTTCAAGTC+TGG | - | chr4.4:63041081-63041100 | MS.gene025499:intron | 50.0% | |
| ACCAGGACACACGTAATCTG+AGG | - | chr4.4:63040361-63040380 | MS.gene025499:CDS | 50.0% | |
| ATGCGATCAACGCTTGCTTC+AGG | + | chr4.4:63039843-63039862 | None:intergenic | 50.0% | |
| CACCAATGCATCAGCAACAC+CGG | + | chr4.4:63040078-63040097 | None:intergenic | 50.0% | |
| CATACGCAAGGTCCAAGAAG+GGG | + | chr4.4:63041166-63041185 | None:intergenic | 50.0% | |
| CTTCTTGGACCTTGCGTATG+CGG | - | chr4.4:63041166-63041185 | MS.gene025499:intron | 50.0% | |
| GACTTGAACCCGTGACCTTT+CGG | + | chr4.4:63041081-63041100 | None:intergenic | 50.0% | |
| GCATACGCAAGGTCCAAGAA+GGG | + | chr4.4:63041167-63041186 | None:intergenic | 50.0% | |
| GCTGTGATGAATGCGTTCCA+TGG | + | chr4.4:63039795-63039814 | None:intergenic | 50.0% | |
| TCCTCAGATTACGTGTGTCC+TGG | + | chr4.4:63040365-63040384 | None:intergenic | 50.0% | |
| TGCGATCAACGCTTGCTTCA+GGG | + | chr4.4:63039842-63039861 | None:intergenic | 50.0% | |
| TTCTTGGACCTTGCGTATGC+GGG | - | chr4.4:63041167-63041186 | MS.gene025499:intron | 50.0% | |
| ! | GGTGGTGTCAGACAATGACA+CGG | - | chr4.4:63040983-63041002 | MS.gene025499:intron | 50.0% |
| ! | GTTGCTGATGCATTGGTGCA+GGG | - | chr4.4:63040080-63040099 | MS.gene025499:CDS | 50.0% |
| ! | TGTTGCTGATGCATTGGTGC+AGG | - | chr4.4:63040079-63040098 | MS.gene025499:CDS | 50.0% |
| !! | CAGTAAGGCTTTTGCCGACT+AGG | + | chr4.4:63042354-63042373 | None:intergenic | 50.0% |
| !! | GTTCTTAAAAAGTGCCCCGG+CGG | + | chr4.4:63040642-63040661 | None:intergenic | 50.0% |
| !! | GTTGGTGCTGTTGGACTTTC+CGG | - | chr4.4:63040056-63040075 | MS.gene025499:CDS | 50.0% |
| !! | TTCCGGTGTTGCTGATGCAT+TGG | - | chr4.4:63040073-63040092 | MS.gene025499:CDS | 50.0% |
| ACTCACAATCCCGGCAGTCT+CGG | + | chr4.4:63042590-63042609 | None:intergenic | 55.0% | |
| CAAGAAGGGGTCCCAGCAAT+TGG | + | chr4.4:63041153-63041172 | None:intergenic | 55.0% | |
| CAATTGCTGGGACCCCTTCT+TGG | - | chr4.4:63041151-63041170 | MS.gene025499:intron | 55.0% | |
| CGCATACGCAAGGTCCAAGA+AGG | + | chr4.4:63041168-63041187 | None:intergenic | 55.0% | |
| GACGACAGCAGTCCTTTGAC+TGG | - | chr4.4:63042145-63042164 | MS.gene025499:intron | 55.0% | |
| TAGGTGTGTGCGTGACCGAA+AGG | - | chr4.4:63041063-63041082 | MS.gene025499:intron | 55.0% | |
| TGTGCGTGACCGAAAGGTCA+CGG | - | chr4.4:63041069-63041088 | MS.gene025499:intron | 55.0% | |
| TTACAGCATGCCGAGACTGC+CGG | - | chr4.4:63042577-63042596 | MS.gene025499:CDS | 55.0% | |
| ! | AAGGGTCGGGTCGGGTTTTA+TGG | - | chr4.4:63040017-63040036 | MS.gene025499:CDS | 55.0% |
| ! | ATTGCTGGCACTGCTGCTTC+TGG | - | chr4.4:63040155-63040174 | MS.gene025499:CDS | 55.0% |
| ! | CGGTGTCAGTGTGTCGTGTT+TGG | + | chr4.4:63040262-63040281 | None:intergenic | 55.0% |
| !! | GTCGGGTCGGGTTTTATGGT+GGG | - | chr4.4:63040021-63040040 | MS.gene025499:CDS | 55.0% |
| ACGGATGCGTGTCTGACACC+AGG | - | chr4.4:63040344-63040363 | MS.gene025499:CDS | 60.0% | |
| CTGCTGGTGAGTTGCCTGAG+AGG | - | chr4.4:63040117-63040136 | MS.gene025499:CDS | 60.0% | |
| GTGCGTGACCGAAAGGTCAC+GGG | - | chr4.4:63041070-63041089 | MS.gene025499:intron | 60.0% | |
| TACAGCATGCCGAGACTGCC+GGG | - | chr4.4:63042578-63042597 | MS.gene025499:CDS | 60.0% | |
| !! | ATGCTAAAGAGTGCCGCCGC+CGG | - | chr4.4:63040623-63040642 | MS.gene025499:intron | 60.0% |
| !! | CTTAAAAAGTGCCCCGGCGG+CGG | + | chr4.4:63040639-63040658 | None:intergenic | 60.0% |
| !! | GGTCGGGTCGGGTTTTATGG+TGG | - | chr4.4:63040020-63040039 | MS.gene025499:CDS | 60.0% |
| !! | TGCTAAAGAGTGCCGCCGCC+GGG | - | chr4.4:63040624-63040643 | MS.gene025499:intron | 65.0% |
| !! | GCTAAAGAGTGCCGCCGCCG+GGG | - | chr4.4:63040625-63040644 | MS.gene025499:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 63039660 | 63042672 | 63039660 | ID=MS.gene025499 |
| chr4.4 | mRNA | 63039660 | 63042672 | 63039660 | ID=MS.gene025499.t1;Parent=MS.gene025499 |
| chr4.4 | exon | 63042156 | 63042672 | 63042156 | ID=MS.gene025499.t1.exon1;Parent=MS.gene025499.t1 |
| chr4.4 | CDS | 63042156 | 63042672 | 63042156 | ID=cds.MS.gene025499.t1;Parent=MS.gene025499.t1 |
| chr4.4 | exon | 63039660 | 63040387 | 63039660 | ID=MS.gene025499.t1.exon2;Parent=MS.gene025499.t1 |
| chr4.4 | CDS | 63039660 | 63040387 | 63039660 | ID=cds.MS.gene025499.t1;Parent=MS.gene025499.t1 |
| Gene Sequence |
| Protein sequence |
