Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025709.t1 | XP_013450365.1 | 100 | 188 | 0 | 0 | 1 | 188 | 1 | 188 | 7.90E-96 | 359.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025709.t1 | Q940B0 | 84.6 | 188 | 28 | 1 | 1 | 188 | 1 | 187 | 1.9e-82 | 306.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025709.t1 | A0A072U5K2 | 100.0 | 188 | 0 | 0 | 1 | 188 | 1 | 188 | 5.7e-96 | 359.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025709 | MS.gene26792 | PPI |
| MS.gene025709 | MS.gene22957 | PPI |
| MS.gene025709 | MS.gene23126 | PPI |
| MS.gene025709 | MS.gene40831 | PPI |
| MS.gene025709 | MS.gene06999 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025709.t1 | MTR_7g108805 | 100.000 | 188 | 0 | 0 | 1 | 188 | 1 | 188 | 2.08e-134 | 374 |
| MS.gene025709.t1 | MTR_1g083460 | 91.489 | 188 | 15 | 1 | 1 | 188 | 1 | 187 | 1.02e-121 | 342 |
| MS.gene025709.t1 | MTR_7g112880 | 86.702 | 188 | 24 | 1 | 1 | 188 | 1 | 187 | 8.53e-117 | 329 |
| MS.gene025709.t1 | MTR_7g112880 | 84.444 | 135 | 20 | 1 | 54 | 188 | 1 | 134 | 1.17e-79 | 233 |
| MS.gene025709.t1 | MTR_4g005170 | 83.929 | 56 | 8 | 1 | 133 | 188 | 582 | 636 | 8.87e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025709.t1 | AT5G27850 | 84.574 | 188 | 28 | 1 | 1 | 188 | 1 | 187 | 2.25e-113 | 320 |
| MS.gene025709.t1 | AT3G05590 | 83.511 | 188 | 30 | 1 | 1 | 188 | 1 | 187 | 3.60e-111 | 315 |
| MS.gene025709.t1 | AT2G47570 | 77.540 | 187 | 40 | 2 | 3 | 188 | 1 | 186 | 9.40e-101 | 288 |
| MS.gene025709.t1 | AT5G27850 | 82.963 | 135 | 22 | 1 | 54 | 188 | 1 | 134 | 1.19e-77 | 228 |
| MS.gene025709.t1 | AT3G05590 | 82.222 | 135 | 23 | 1 | 54 | 188 | 1 | 134 | 4.63e-77 | 227 |
| MS.gene025709.t1 | AT3G05590 | 82.222 | 135 | 23 | 1 | 54 | 188 | 1 | 134 | 4.63e-77 | 227 |
Find 54 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGGTACGTTTAGTCTTCT+TGG | 0.192478 | 7.4:+6399762 | None:intergenic |
| TTATGAAGTACCTGCAATTA+AGG | 0.289178 | 7.4:-6398955 | MS.gene025709:CDS |
| CTGGCTCTTAGAGCTCCTTT+AGG | 0.297513 | 7.4:-6398855 | MS.gene025709:CDS |
| AGGTAGATATCATTGGATTT+TGG | 0.303386 | 7.4:+6399739 | None:intergenic |
| AGCCACCACTATCACTTTCT+AGG | 0.308293 | 7.4:-6399515 | MS.gene025709:CDS |
| TGGCTCTTAGAGCTCCTTTA+GGG | 0.321716 | 7.4:-6398854 | MS.gene025709:CDS |
| GTGCCGTGACAGATGACATT+AGG | 0.331949 | 7.4:-6398980 | MS.gene025709:CDS |
| ATGTTTCAGGTTCTTCTTAG+AGG | 0.334993 | 7.4:-6398208 | MS.gene025709:intron |
| GACTGAAAGTAATTTCAATA+AGG | 0.349360 | 7.4:-6399574 | MS.gene025709:CDS |
| AGAGCAGTTACCTTAATTGC+AGG | 0.362185 | 7.4:+6398945 | None:intergenic |
| TCAATAAGGTTATCCTTAAG+AGG | 0.371127 | 7.4:-6399560 | MS.gene025709:CDS |
| TGCTCATGAAAAGCCTCTTA+AGG | 0.380870 | 7.4:+6399547 | None:intergenic |
| TTGAAGCCGCTAGAGGAAAA+AGG | 0.383923 | 7.4:-6398084 | MS.gene025709:CDS |
| CTACCTCAAGCTTCTCGTTA+AGG | 0.389550 | 7.4:-6399722 | MS.gene025709:intron |
| TGCCGTGACAGATGACATTA+GGG | 0.403697 | 7.4:-6398979 | MS.gene025709:CDS |
| CAATTAAGGTAACTGCTCTA+AGG | 0.406837 | 7.4:-6398941 | MS.gene025709:CDS |
| AAGCTTGAGGTAGATATCAT+TGG | 0.411467 | 7.4:+6399732 | None:intergenic |
| GTGCCTCACCTTTGATCAGC+TGG | 0.415929 | 7.4:-6398874 | MS.gene025709:CDS |
| TGCTCTAAGGTTCACCGAAA+AGG | 0.469427 | 7.4:-6398928 | MS.gene025709:CDS |
| TTCGCAGGGTATCGATTTGA+AGG | 0.470824 | 7.4:-6399797 | MS.gene025709:intron |
| GGTAAGATTGCTGTAGTTGT+TGG | 0.475236 | 7.4:-6399002 | MS.gene025709:CDS |
| AAGCACTTTGGACGAGCTCC+TGG | 0.482073 | 7.4:-6398160 | MS.gene025709:CDS |
| CGTGAGGCTGTCAAGCACTT+TGG | 0.482505 | 7.4:-6398172 | MS.gene025709:CDS |
| CAGGGTATCGATTTGAAGGC+AGG | 0.483139 | 7.4:-6399793 | MS.gene025709:CDS |
| TAAGGTTCACCGAAAAGGCC+AGG | 0.486544 | 7.4:-6398923 | MS.gene025709:CDS |
| CATACCGTGTTCTGCCCTAA+AGG | 0.491830 | 7.4:+6398840 | None:intergenic |
| AGCCTTCTCAATTCTAGCCC+TGG | 0.500353 | 7.4:+6398905 | None:intergenic |
| GCGATTATATACCTTTCCCT+TGG | 0.506650 | 7.4:+6399479 | None:intergenic |
| GTGTTGCTGTGTGGCACACC+AGG | 0.524962 | 7.4:+6398142 | None:intergenic |
| CAGTCCTTCGAACAAGGAAA+CGG | 0.531384 | 7.4:+6399592 | None:intergenic |
| TACTTTCAGTCCTTCGAACA+AGG | 0.547564 | 7.4:+6399586 | None:intergenic |
| ATCAACCTAGAAAGTGATAG+TGG | 0.548653 | 7.4:+6399510 | None:intergenic |
| CTAGAATTGAGAAGGCTGGT+GGG | 0.553032 | 7.4:-6398899 | MS.gene025709:CDS |
| AGGTTGATTCGTTACACCAA+GGG | 0.558600 | 7.4:-6399495 | MS.gene025709:CDS |
| AAAGTGCTTGACAGCCTCAC+GGG | 0.558822 | 7.4:+6398174 | None:intergenic |
| GATTCGTTACACCAAGGGAA+AGG | 0.565427 | 7.4:-6399490 | MS.gene025709:intron |
| TATACCGTTTCCTTGTTCGA+AGG | 0.566828 | 7.4:-6399596 | MS.gene025709:CDS |
| AGGGCTAGAATTGAGAAGGC+TGG | 0.575107 | 7.4:-6398903 | MS.gene025709:CDS |
| CAAAGTGCTTGACAGCCTCA+CGG | 0.580659 | 7.4:+6398173 | None:intergenic |
| CGAAAGGTTGAAGCCGCTAG+AGG | 0.583684 | 7.4:-6398091 | MS.gene025709:CDS |
| GCTAGAATTGAGAAGGCTGG+TGG | 0.586828 | 7.4:-6398900 | MS.gene025709:CDS |
| TCTAAGAGCCAGCTGATCAA+AGG | 0.589919 | 7.4:+6398866 | None:intergenic |
| TAGAATTGAGAAGGCTGGTG+GGG | 0.601753 | 7.4:-6398898 | MS.gene025709:CDS |
| AACCCTAATGTCATCTGTCA+CGG | 0.612086 | 7.4:+6398977 | None:intergenic |
| GGCCAGGGCTAGAATTGAGA+AGG | 0.617622 | 7.4:-6398907 | MS.gene025709:CDS |
| AGCTCCTTTAGGGCAGAACA+CGG | 0.621376 | 7.4:-6398844 | MS.gene025709:intron |
| AACACTAAGCCCTATGTCCG+TGG | 0.624133 | 7.4:-6398124 | MS.gene025709:CDS |
| AAGGTTCACCGAAAAGGCCA+GGG | 0.631182 | 7.4:-6398922 | MS.gene025709:CDS |
| ATACCTTAACGAGAAGCTTG+AGG | 0.643723 | 7.4:+6399719 | None:intergenic |
| TAGGTTGATTCGTTACACCA+AGG | 0.646840 | 7.4:-6399496 | MS.gene025709:CDS |
| AACCTAGAAAGTGATAGTGG+TGG | 0.668105 | 7.4:+6399513 | None:intergenic |
| GAGCCAGCTGATCAAAGGTG+AGG | 0.684975 | 7.4:+6398871 | None:intergenic |
| GGTATCGATTTGAAGGCAGG+AGG | 0.701621 | 7.4:-6399790 | MS.gene025709:CDS |
| TAGGGCTTAGTGTTGCTGTG+TGG | 0.709531 | 7.4:+6398133 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTTGTATTTATAACAA+AGG | - | chr7.4:6398525-6398544 | MS.gene025709:intron | 15.0% |
| !!! | TGGTAAACATATTATTTTAT+AGG | + | chr7.4:6399480-6399499 | None:intergenic | 15.0% |
| !!! | TGTTATAAACTTTTAATCTT+CGG | + | chr7.4:6399225-6399244 | None:intergenic | 15.0% |
| !!! | TTTACTTTGTTTTGAAATAT+TGG | - | chr7.4:6399392-6399411 | MS.gene025709:intron | 15.0% |
| !! | AACTAAAGCAAAATAAAAAC+AGG | + | chr7.4:6399519-6399538 | None:intergenic | 20.0% |
| !! | TCCTAAAGTTGTAATAAAAA+AGG | + | chr7.4:6399633-6399652 | None:intergenic | 20.0% |
| !!! | TATTATTTTATAGGCTGTAT+TGG | + | chr7.4:6399471-6399490 | None:intergenic | 20.0% |
| !!! | TTTTCTTGTATTAATGTTTC+AGG | - | chr7.4:6399727-6399746 | MS.gene025709:CDS | 20.0% |
| ! | AAAAAAAAAGCCTATGACAT+GGG | + | chr7.4:6398777-6398796 | None:intergenic | 25.0% |
| ! | ACAAAGTAAAACAAAAACAC+AGG | + | chr7.4:6399382-6399401 | None:intergenic | 25.0% |
| ! | ATAAAAAAGGCAGCAAAAAT+AGG | + | chr7.4:6399620-6399639 | None:intergenic | 25.0% |
| ! | GAATAGAATGATAAATGAAG+AGG | - | chr7.4:6399353-6399372 | MS.gene025709:intron | 25.0% |
| ! | GACTGAAAGTAATTTCAATA+AGG | - | chr7.4:6398374-6398393 | MS.gene025709:intron | 25.0% |
| ! | GTTATTGTGAATCTGAATAA+TGG | - | chr7.4:6398275-6398294 | MS.gene025709:intron | 25.0% |
| ! | TAAAAAAAAAGCCTATGACA+TGG | + | chr7.4:6398778-6398797 | None:intergenic | 25.0% |
| !! | CAGAAAGTATAACAGTTATA+AGG | + | chr7.4:6399446-6399465 | None:intergenic | 25.0% |
| !! | TTATTACAACTTTAGGAGAA+AGG | - | chr7.4:6399636-6399655 | MS.gene025709:intron | 25.0% |
| !!! | GCCTTTTTTATTACAACTTT+AGG | - | chr7.4:6399629-6399648 | MS.gene025709:intron | 25.0% |
| !!! | TTGCTGTAATTTTAGAAGTT+TGG | - | chr7.4:6399190-6399209 | MS.gene025709:intron | 25.0% |
| !!! | TTTTTTCTTTCTCTGGTATT+AGG | - | chr7.4:6398921-6398940 | MS.gene025709:CDS | 25.0% |
| AAAACATGACTTCATACAAG+TGG | + | chr7.4:6399295-6399314 | None:intergenic | 30.0% | |
| ATTAAGACAACATACATCTG+AGG | - | chr7.4:6399695-6399714 | MS.gene025709:intron | 30.0% | |
| CAAGAGTAGAAAATGAATGA+AGG | + | chr7.4:6398256-6398275 | None:intergenic | 30.0% | |
| CAATTGCATGAAGTTTAGTT+TGG | + | chr7.4:6399258-6399277 | None:intergenic | 30.0% | |
| GAGTTAGTTATAAGAAATGG+TGG | + | chr7.4:6398097-6398116 | None:intergenic | 30.0% | |
| TCAAATAAGCGAATCAAAAC+AGG | - | chr7.4:6398751-6398770 | MS.gene025709:intron | 30.0% | |
| TCAATAAGGTTATCCTTAAG+AGG | - | chr7.4:6398388-6398407 | MS.gene025709:intron | 30.0% | |
| TCGGAGTTAGTTATAAGAAA+TGG | + | chr7.4:6398100-6398119 | None:intergenic | 30.0% | |
| ! | AGGTAGATATCATTGGATTT+TGG | + | chr7.4:6398212-6398231 | None:intergenic | 30.0% |
| ! | TGCATGTATGCTTTTAGATA+CGG | - | chr7.4:6398829-6398848 | MS.gene025709:intron | 30.0% |
| ! | TTATGAAGTACCTGCAATTA+AGG | - | chr7.4:6398993-6399012 | MS.gene025709:CDS | 30.0% |
| !! | GCTTTTAGATACGGTTTTAT+TGG | - | chr7.4:6398838-6398857 | MS.gene025709:intron | 30.0% |
| !! | TTGTCTTAATTTGCAAAGAG+TGG | + | chr7.4:6399685-6399704 | None:intergenic | 30.0% |
| !!! | GTTCACTTTTTTTCTTTCTC+TGG | - | chr7.4:6398914-6398933 | MS.gene025709:CDS | 30.0% |
| AAGCTTGAGGTAGATATCAT+TGG | + | chr7.4:6398219-6398238 | None:intergenic | 35.0% | |
| ATCAACCTAGAAAGTGATAG+TGG | + | chr7.4:6398441-6398460 | None:intergenic | 35.0% | |
| CAATTAAGGTAACTGCTCTA+AGG | - | chr7.4:6399007-6399026 | MS.gene025709:CDS | 35.0% | |
| TTCTTTCTCTGGTATTAGGA+GGG | - | chr7.4:6398925-6398944 | MS.gene025709:CDS | 35.0% | |
| TTTCTTTCTCTGGTATTAGG+AGG | - | chr7.4:6398924-6398943 | MS.gene025709:CDS | 35.0% | |
| ! | GCGGCAAATTAGATCAATTT+TGG | - | chr7.4:6399575-6399594 | MS.gene025709:CDS | 35.0% |
| ! | TGTTTTTCCAAACACTCGTA+CGG | - | chr7.4:6398707-6398726 | MS.gene025709:intron | 35.0% |
| ! | TTGGATAATGCTGTTACTTG+CGG | - | chr7.4:6399411-6399430 | MS.gene025709:intron | 35.0% |
| !! | ATGTTTCAGGTTCTTCTTAG+AGG | - | chr7.4:6399740-6399759 | MS.gene025709:CDS | 35.0% |
| !! | GATATCATTGGATTTTGGTG+CGG | + | chr7.4:6398207-6398226 | None:intergenic | 35.0% |
| !! | GGTTGATGAAGAGATAACAT+TGG | - | chr7.4:6398859-6398878 | MS.gene025709:CDS | 35.0% |
| !!! | CCTTTCGTGATTTTTTTCCA+CGG | + | chr7.4:6399844-6399863 | None:intergenic | 35.0% |
| !!! | GATTTTTTTCCACGGACATA+GGG | + | chr7.4:6399836-6399855 | None:intergenic | 35.0% |
| !!! | TGATTTTTTTCCACGGACAT+AGG | + | chr7.4:6399837-6399856 | None:intergenic | 35.0% |
| AACCCTAATGTCATCTGTCA+CGG | + | chr7.4:6398974-6398993 | None:intergenic | 40.0% | |
| ACTTCTATACCTATCTGCTG+CGG | - | chr7.4:6399556-6399575 | MS.gene025709:CDS | 40.0% | |
| AGAGCAGTTACCTTAATTGC+AGG | + | chr7.4:6399006-6399025 | None:intergenic | 40.0% | |
| ATACCTTAACGAGAAGCTTG+AGG | + | chr7.4:6398232-6398251 | None:intergenic | 40.0% | |
| CCGTGGAAAAAAATCACGAA+AGG | - | chr7.4:6399841-6399860 | MS.gene025709:intron | 40.0% | |
| GCGATTATATACCTTTCCCT+TGG | + | chr7.4:6398472-6398491 | None:intergenic | 40.0% | |
| GGTAAGATTGCTGTAGTTGT+TGG | - | chr7.4:6398946-6398965 | MS.gene025709:CDS | 40.0% | |
| TACTTTCAGTCCTTCGAACA+AGG | + | chr7.4:6398365-6398384 | None:intergenic | 40.0% | |
| TATACCGTTTCCTTGTTCGA+AGG | - | chr7.4:6398352-6398371 | MS.gene025709:intron | 40.0% | |
| TGCTCATGAAAAGCCTCTTA+AGG | + | chr7.4:6398404-6398423 | None:intergenic | 40.0% | |
| ! | CAGGAAGTACACTAGATTTG+TGG | + | chr7.4:6399500-6399519 | None:intergenic | 40.0% |
| !! | AACCTAGAAAGTGATAGTGG+TGG | + | chr7.4:6398438-6398457 | None:intergenic | 40.0% |
| !! | AGGTTGATTCGTTACACCAA+GGG | - | chr7.4:6398453-6398472 | MS.gene025709:intron | 40.0% |
| !! | TAGGTTGATTCGTTACACCA+AGG | - | chr7.4:6398452-6398471 | MS.gene025709:intron | 40.0% |
| AGAAAGAGGAGTGAGATGAG+AGG | + | chr7.4:6398126-6398145 | None:intergenic | 45.0% | |
| AGAGGAAAAAGGAAGAGCAG+AGG | - | chr7.4:6399875-6399894 | MS.gene025709:intron | 45.0% | |
| AGCCACCACTATCACTTTCT+AGG | - | chr7.4:6398433-6398452 | MS.gene025709:intron | 45.0% | |
| CAGTCCTTCGAACAAGGAAA+CGG | + | chr7.4:6398359-6398378 | None:intergenic | 45.0% | |
| CTACCTCAAGCTTCTCGTTA+AGG | - | chr7.4:6398226-6398245 | MS.gene025709:intron | 45.0% | |
| CTAGAATTGAGAAGGCTGGT+GGG | - | chr7.4:6399049-6399068 | MS.gene025709:intron | 45.0% | |
| GATTCGTTACACCAAGGGAA+AGG | - | chr7.4:6398458-6398477 | MS.gene025709:intron | 45.0% | |
| TAGAATTGAGAAGGCTGGTG+GGG | - | chr7.4:6399050-6399069 | MS.gene025709:intron | 45.0% | |
| TCAAAACAGGCCCATGTCAT+AGG | - | chr7.4:6398764-6398783 | MS.gene025709:intron | 45.0% | |
| TCTAAGAGCCAGCTGATCAA+AGG | + | chr7.4:6399085-6399104 | None:intergenic | 45.0% | |
| TGCCGTGACAGATGACATTA+GGG | - | chr7.4:6398969-6398988 | MS.gene025709:CDS | 45.0% | |
| TGGCTCTTAGAGCTCCTTTA+GGG | - | chr7.4:6399094-6399113 | MS.gene025709:intron | 45.0% | |
| TTGAAGCCGCTAGAGGAAAA+AGG | - | chr7.4:6399864-6399883 | MS.gene025709:intron | 45.0% | |
| ! | CCTCTTTCTCTCTTTTCGCA+GGG | - | chr7.4:6398137-6398156 | MS.gene025709:CDS | 45.0% |
| ! | GCTCTTCCTTTTTCCTCTAG+CGG | + | chr7.4:6399873-6399892 | None:intergenic | 45.0% |
| ! | GTAAGTACCGTACGAGTGTT+TGG | + | chr7.4:6398717-6398736 | None:intergenic | 45.0% |
| ! | TCCTCTTTCTCTCTTTTCGC+AGG | - | chr7.4:6398136-6398155 | MS.gene025709:CDS | 45.0% |
| ! | TCTAATTTGCCGCAGCAGAT+AGG | + | chr7.4:6399568-6399587 | None:intergenic | 45.0% |
| ! | TGCGGTACGTTTAGTCTTCT+TGG | + | chr7.4:6398189-6398208 | None:intergenic | 45.0% |
| !! | AATTCTAGCCCTGGCCTTTT+CGG | + | chr7.4:6399037-6399056 | None:intergenic | 45.0% |
| !! | TGCTCTAAGGTTCACCGAAA+AGG | - | chr7.4:6399020-6399039 | MS.gene025709:intron | 45.0% |
| !! | TTCGCAGGGTATCGATTTGA+AGG | - | chr7.4:6398151-6398170 | MS.gene025709:CDS | 45.0% |
| AACACTAAGCCCTATGTCCG+TGG | - | chr7.4:6399824-6399843 | MS.gene025709:intron | 50.0% | |
| AAGGTTCACCGAAAAGGCCA+GGG | - | chr7.4:6399026-6399045 | MS.gene025709:intron | 50.0% | |
| AGCCTTCTCAATTCTAGCCC+TGG | + | chr7.4:6399046-6399065 | None:intergenic | 50.0% | |
| AGGGCTAGAATTGAGAAGGC+TGG | - | chr7.4:6399045-6399064 | MS.gene025709:intron | 50.0% | |
| CATACCGTGTTCTGCCCTAA+AGG | + | chr7.4:6399111-6399130 | None:intergenic | 50.0% | |
| CCCTGCGAAAAGAGAGAAAG+AGG | + | chr7.4:6398140-6398159 | None:intergenic | 50.0% | |
| GCTAGAATTGAGAAGGCTGG+TGG | - | chr7.4:6399048-6399067 | MS.gene025709:intron | 50.0% | |
| GGAGTGAGATGAGAGGTTGT+CGG | + | chr7.4:6398119-6398138 | None:intergenic | 50.0% | |
| GTGCCGTGACAGATGACATT+AGG | - | chr7.4:6398968-6398987 | MS.gene025709:CDS | 50.0% | |
| TAAGGTTCACCGAAAAGGCC+AGG | - | chr7.4:6399025-6399044 | MS.gene025709:intron | 50.0% | |
| TCCTCCTCTACAATCCCCAT+CGG | - | chr7.4:6398069-6398088 | MS.gene025709:CDS | 50.0% | |
| ! | AAAGTGCTTGACAGCCTCAC+GGG | + | chr7.4:6399777-6399796 | None:intergenic | 50.0% |
| ! | ACAGCCTCACGGGCATTTTT+GGG | + | chr7.4:6399767-6399786 | None:intergenic | 50.0% |
| ! | ATAAGAAATGGTGGCGCCGA+TGG | + | chr7.4:6398088-6398107 | None:intergenic | 50.0% |
| ! | CAAAGTGCTTGACAGCCTCA+CGG | + | chr7.4:6399778-6399797 | None:intergenic | 50.0% |
| ! | CTGGCTCTTAGAGCTCCTTT+AGG | - | chr7.4:6399093-6399112 | MS.gene025709:intron | 50.0% |
| ! | TAGGGCTTAGTGTTGCTGTG+TGG | + | chr7.4:6399818-6399837 | None:intergenic | 50.0% |
| !! | AGCTCCTTTAGGGCAGAACA+CGG | - | chr7.4:6399104-6399123 | MS.gene025709:intron | 50.0% |
| !! | CAGGGTATCGATTTGAAGGC+AGG | - | chr7.4:6398155-6398174 | MS.gene025709:CDS | 50.0% |
| !! | GGTATCGATTTGAAGGCAGG+AGG | - | chr7.4:6398158-6398177 | MS.gene025709:CDS | 50.0% |
| !! | TAAGAAATGGTGGCGCCGAT+GGG | + | chr7.4:6398087-6398106 | None:intergenic | 50.0% |
| AAGCACTTTGGACGAGCTCC+TGG | - | chr7.4:6399788-6399807 | MS.gene025709:CDS | 55.0% | |
| AGGTCCCAAAAATGCCCGTG+AGG | - | chr7.4:6399760-6399779 | MS.gene025709:CDS | 55.0% | |
| CGAAAGGTTGAAGCCGCTAG+AGG | - | chr7.4:6399857-6399876 | MS.gene025709:intron | 55.0% | |
| CGTGAGGCTGTCAAGCACTT+TGG | - | chr7.4:6399776-6399795 | MS.gene025709:CDS | 55.0% | |
| GAGCCAGCTGATCAAAGGTG+AGG | + | chr7.4:6399080-6399099 | None:intergenic | 55.0% | |
| GGCCAGGGCTAGAATTGAGA+AGG | - | chr7.4:6399041-6399060 | MS.gene025709:intron | 55.0% | |
| GTGCCTCACCTTTGATCAGC+TGG | - | chr7.4:6399074-6399093 | MS.gene025709:intron | 55.0% | |
| ! | GACAGCCTCACGGGCATTTT+TGG | + | chr7.4:6399768-6399787 | None:intergenic | 55.0% |
| !! | AAGAAATGGTGGCGCCGATG+GGG | + | chr7.4:6398086-6398105 | None:intergenic | 55.0% |
| GCCGATGGGGATTGTAGAGG+AGG | + | chr7.4:6398073-6398092 | None:intergenic | 60.0% | |
| ! | GTGTTGCTGTGTGGCACACC+AGG | + | chr7.4:6399809-6399828 | None:intergenic | 60.0% |
| !! | GGCGCCGATGGGGATTGTAG+AGG | + | chr7.4:6398076-6398095 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 6398060 | 6399910 | 6398060 | ID=MS.gene025709 |
| chr7.4 | mRNA | 6398060 | 6399910 | 6398060 | ID=MS.gene025709.t1;Parent=MS.gene025709 |
| chr7.4 | exon | 6399908 | 6399910 | 6399908 | ID=MS.gene025709.t1.exon1;Parent=MS.gene025709.t1 |
| chr7.4 | CDS | 6399908 | 6399910 | 6399908 | ID=cds.MS.gene025709.t1;Parent=MS.gene025709.t1 |
| chr7.4 | exon | 6399723 | 6399812 | 6399723 | ID=MS.gene025709.t1.exon2;Parent=MS.gene025709.t1 |
| chr7.4 | CDS | 6399723 | 6399812 | 6399723 | ID=cds.MS.gene025709.t1;Parent=MS.gene025709.t1 |
| chr7.4 | exon | 6399491 | 6399619 | 6399491 | ID=MS.gene025709.t1.exon3;Parent=MS.gene025709.t1 |
| chr7.4 | CDS | 6399491 | 6399619 | 6399491 | ID=cds.MS.gene025709.t1;Parent=MS.gene025709.t1 |
| chr7.4 | exon | 6398845 | 6399027 | 6398845 | ID=MS.gene025709.t1.exon4;Parent=MS.gene025709.t1 |
| chr7.4 | CDS | 6398845 | 6399027 | 6398845 | ID=cds.MS.gene025709.t1;Parent=MS.gene025709.t1 |
| chr7.4 | exon | 6398060 | 6398221 | 6398060 | ID=MS.gene025709.t1.exon5;Parent=MS.gene025709.t1 |
| chr7.4 | CDS | 6398060 | 6398221 | 6398060 | ID=cds.MS.gene025709.t1;Parent=MS.gene025709.t1 |
| Gene Sequence |
| Protein sequence |
