Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23126.t1 | XP_003626231.1 | 99.4 | 163 | 1 | 0 | 1 | 163 | 1 | 163 | 1.50E-83 | 318.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23126.t1 | O65729 | 86.9 | 160 | 20 | 1 | 4 | 163 | 1 | 159 | 1.6e-73 | 276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23126.t1 | B7FMF5 | 99.4 | 163 | 1 | 0 | 1 | 163 | 1 | 163 | 1.1e-83 | 318.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049876 | MS.gene23126 | 0.832451 | 9.38E-56 | -1.69E-46 |
| MS.gene050281 | MS.gene23126 | 0.813263 | 2.80E-51 | -1.69E-46 |
| MS.gene050290 | MS.gene23126 | 0.860686 | 1.74E-63 | -1.69E-46 |
| MS.gene050916 | MS.gene23126 | 0.901665 | 2.13E-78 | -1.69E-46 |
| MS.gene051904 | MS.gene23126 | 0.839842 | 1.24E-57 | -1.69E-46 |
| MS.gene054937 | MS.gene23126 | 0.834165 | 3.51E-56 | -1.69E-46 |
| MS.gene056917 | MS.gene23126 | 0.811052 | 8.49E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025709 | MS.gene23126 | PPI |
| MS.gene22957 | MS.gene23126 | PPI |
| MS.gene40831 | MS.gene23126 | PPI |
| MS.gene06999 | MS.gene23126 | PPI |
| MS.gene26792 | MS.gene23126 | PPI |
| MS.gene23126 | MS.gene26792 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23126.t1 | MTR_7g112880 | 99.465 | 187 | 1 | 0 | 1 | 187 | 1 | 187 | 3.71e-135 | 375 |
| MS.gene23126.t1 | MTR_7g108805 | 87.234 | 188 | 23 | 1 | 1 | 187 | 1 | 188 | 5.97e-117 | 330 |
| MS.gene23126.t1 | MTR_1g083460 | 86.096 | 187 | 26 | 0 | 1 | 187 | 1 | 187 | 1.39e-116 | 328 |
| MS.gene23126.t1 | MTR_7g112880 | 99.254 | 134 | 1 | 0 | 54 | 187 | 1 | 134 | 1.57e-94 | 271 |
| MS.gene23126.t1 | MTR_4g005170 | 85.455 | 55 | 8 | 0 | 133 | 187 | 582 | 636 | 5.74e-24 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23126.t1 | AT5G27850 | 81.818 | 187 | 34 | 0 | 1 | 187 | 1 | 187 | 8.05e-113 | 319 |
| MS.gene23126.t1 | AT3G05590 | 81.283 | 187 | 35 | 0 | 1 | 187 | 1 | 187 | 4.55e-112 | 317 |
| MS.gene23126.t1 | AT2G47570 | 75.269 | 186 | 45 | 1 | 3 | 187 | 1 | 186 | 1.02e-100 | 288 |
| MS.gene23126.t1 | AT3G05590 | 80.597 | 134 | 26 | 0 | 54 | 187 | 1 | 134 | 9.64e-79 | 231 |
| MS.gene23126.t1 | AT3G05590 | 80.597 | 134 | 26 | 0 | 54 | 187 | 1 | 134 | 9.64e-79 | 231 |
| MS.gene23126.t1 | AT5G27850 | 79.851 | 134 | 27 | 0 | 54 | 187 | 1 | 134 | 1.78e-77 | 228 |
Find 65 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGAAGAGTAGAGGATTT+AGG | 0.132509 | 7.2:+4192405 | MS.gene23126:CDS |
| GAGGAAGAGTAGAGGATTTA+GGG | 0.159004 | 7.2:+4192406 | MS.gene23126:CDS |
| ACTGCTTCCCTAGCATTCTT+TGG | 0.206364 | 7.2:-4192290 | None:intergenic |
| ATCAACTTTGACAGAGAAAT+TGG | 0.227766 | 7.2:-4190795 | None:intergenic |
| TAGCATTCTTTGGGCCTCTT+AGG | 0.233236 | 7.2:-4192280 | None:intergenic |
| AGGTAGATATCATTGGATTT+AGG | 0.281327 | 7.2:-4189393 | None:intergenic |
| GGTAAAATTGGTGTCGTTGT+GGG | 0.314974 | 7.2:+4190950 | MS.gene23126:CDS |
| CTGCTTCCCTAGCATTCTTT+GGG | 0.325698 | 7.2:-4192289 | None:intergenic |
| CTTCCCTTTGATCTTACATA+AGG | 0.356102 | 7.2:-4192359 | None:intergenic |
| GGGCTGTAACAGATGATATC+AGG | 0.365645 | 7.2:+4190972 | MS.gene23126:CDS |
| TATATCGCTTCCTTGTTAGA+AGG | 0.375930 | 7.2:+4190709 | MS.gene23126:CDS |
| GTTATGCAGGACGGTAAAAT+TGG | 0.388471 | 7.2:+4190938 | MS.gene23126:intron |
| GGATTTAGGTTCGGTTCGTT+TGG | 0.400306 | 7.2:-4189379 | None:intergenic |
| GAGCTTGAGGTAGATATCAT+TGG | 0.411467 | 7.2:-4189400 | None:intergenic |
| CTTTGATCTTACATAAGGCT+TGG | 0.418522 | 7.2:-4192354 | None:intergenic |
| CAGGGGATCGATCTCAAAGC+TGG | 0.420599 | 7.2:+4189339 | MS.gene23126:intron |
| GATATCATTGGATTTAGGTT+CGG | 0.438911 | 7.2:-4189388 | None:intergenic |
| TCTACTCTTCCTCTTTCCTC+TGG | 0.440211 | 7.2:-4192396 | None:intergenic |
| GGGCAAGTTGATCAAATGTT+AGG | 0.445307 | 7.2:-4191081 | None:intergenic |
| CGGTAAAATTGGTGTCGTTG+TGG | 0.446137 | 7.2:+4190949 | MS.gene23126:CDS |
| TTTGTCCAAGGGGAGCTCTA+AGG | 0.449212 | 7.2:-4191102 | None:intergenic |
| GTGCCGTCTCTGTGAACCTA+AGG | 0.461512 | 7.2:-4191027 | None:intergenic |
| AAGCCTTATGTAAGATCAAA+GGG | 0.467688 | 7.2:+4192356 | MS.gene23126:CDS |
| AAACACTTTGGTCGTGCTCC+TGG | 0.468460 | 7.2:+4192314 | MS.gene23126:CDS |
| GTAAAATTGGTGTCGTTGTG+GGG | 0.476743 | 7.2:+4190951 | MS.gene23126:CDS |
| CATTCTTTGGGCCTCTTAGG+AGG | 0.481833 | 7.2:-4192277 | None:intergenic |
| TAAGAGGCCCAAAGAATGCT+AGG | 0.491610 | 7.2:+4192282 | MS.gene23126:CDS |
| CAAGCCTTATGTAAGATCAA+AGG | 0.498391 | 7.2:+4192355 | MS.gene23126:CDS |
| TTGTCCAAGGGGAGCTCTAA+GGG | 0.500585 | 7.2:-4191101 | None:intergenic |
| TGAATTCAGGTCCTCCTAAG+AGG | 0.506122 | 7.2:+4192266 | MS.gene23126:intron |
| AAGAGAAGGCCAGAGGAAAG+AGG | 0.507573 | 7.2:+4192387 | MS.gene23126:CDS |
| GAATGGCTGTGTGGCACACC+AGG | 0.520029 | 7.2:-4192332 | None:intergenic |
| ATCTTACATAAGGCTTGGAA+TGG | 0.527336 | 7.2:-4192349 | None:intergenic |
| TGCCCTTAGGTTCACAGAGA+CGG | 0.538036 | 7.2:+4191024 | MS.gene23126:CDS |
| AAAGTTGATCGAGTACATGA+AGG | 0.551641 | 7.2:+4190809 | MS.gene23126:CDS |
| AAGTTGATCGAGTACATGAA+GGG | 0.557741 | 7.2:+4190810 | MS.gene23126:CDS |
| GGACCTTGACGAGGAGCTTG+AGG | 0.569815 | 7.2:-4189413 | None:intergenic |
| AGGGGATCGATCTCAAAGCT+GGG | 0.574140 | 7.2:+4189340 | MS.gene23126:intron |
| CTTGCCCTTAGAGCTCCCCT+TGG | 0.575267 | 7.2:+4191097 | MS.gene23126:CDS |
| TGCTGTCAGTCCTTCTAACA+AGG | 0.579764 | 7.2:-4190719 | None:intergenic |
| GGCTGTAACAGATGATATCA+GGG | 0.589836 | 7.2:+4190973 | MS.gene23126:CDS |
| AGGGAAGCAGTAAAACACTT+TGG | 0.592083 | 7.2:+4192302 | MS.gene23126:CDS |
| CAAGCGCTTGTTCATGAGCA+AGG | 0.595633 | 7.2:+4190761 | MS.gene23126:CDS |
| AACTTTGACAGAGAAATTGG+AGG | 0.595797 | 7.2:-4190792 | None:intergenic |
| AAAGGGAAGGAAACAAGAGA+AGG | 0.607313 | 7.2:+4192373 | MS.gene23126:CDS |
| CGTGCAAGAATAGAGAAGGC+GGG | 0.608166 | 7.2:+4191049 | MS.gene23126:CDS |
| TTGACAGAGAAATTGGAGGT+CGG | 0.608358 | 7.2:-4190788 | None:intergenic |
| TGCCGTCTCTGTGAACCTAA+GGG | 0.611665 | 7.2:-4191026 | None:intergenic |
| CTACCTCAAGCTCCTCGTCA+AGG | 0.612377 | 7.2:+4189410 | MS.gene23126:CDS |
| TAAAATTGGTGTCGTTGTGG+GGG | 0.613763 | 7.2:+4190952 | MS.gene23126:CDS |
| CTTATGTAAGATCAAAGGGA+AGG | 0.618781 | 7.2:+4192360 | MS.gene23126:CDS |
| GGCACGTGCAAGAATAGAGA+AGG | 0.623253 | 7.2:+4191045 | MS.gene23126:CDS |
| AGGAAACAAGAGAAGGCCAG+AGG | 0.627136 | 7.2:+4192380 | MS.gene23126:CDS |
| AGAGGAAAGAGGAAGAGTAG+AGG | 0.627781 | 7.2:+4192398 | MS.gene23126:CDS |
| AGCTCCCCTTGGACAAAACA+CGG | 0.631576 | 7.2:+4191108 | MS.gene23126:CDS |
| AAGAGGCCCAAAGAATGCTA+GGG | 0.636036 | 7.2:+4192283 | MS.gene23126:CDS |
| GGGGATCGATCTCAAAGCTG+GGG | 0.637375 | 7.2:+4189341 | MS.gene23126:intron |
| AAATGGAATGGACCTTGACG+AGG | 0.641410 | 7.2:-4189422 | None:intergenic |
| AGTTGATCGAGTACATGAAG+GGG | 0.649783 | 7.2:+4190811 | MS.gene23126:CDS |
| GATCGAGTACATGAAGGGGA+AGG | 0.663524 | 7.2:+4190815 | MS.gene23126:CDS |
| ACGTGCAAGAATAGAGAAGG+CGG | 0.663924 | 7.2:+4191048 | MS.gene23126:CDS |
| GCAAGAATAGAGAAGGCGGG+TGG | 0.710757 | 7.2:+4191052 | MS.gene23126:CDS |
| GGGATCGATCTCAAAGCTGG+GGG | 0.738953 | 7.2:+4189342 | MS.gene23126:CDS |
| GACTGACAGCAATTTCAATG+CGG | 0.745385 | 7.2:+4190731 | MS.gene23126:CDS |
| TAAGGCTTGGAATGGCTGTG+TGG | 0.750805 | 7.2:-4192341 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACGATAAAATAAAAATTA+TGG | - | chr7.2:4189705-4189724 | None:intergenic | 10.0% |
| !!! | ATTTTGTAAAAATAATAAAG+GGG | - | chr7.2:4191899-4191918 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTGAAAG+AGG | + | chr7.2:4192116-4192135 | MS.gene23126:intron | 10.0% |
| !! | AACATGTATAATTTCAAAAA+GGG | + | chr7.2:4192158-4192177 | MS.gene23126:intron | 15.0% |
| !! | AACTAAACAATTATAATTTC+TGG | - | chr7.2:4190875-4190894 | None:intergenic | 15.0% |
| !! | AGAATGCAAATTATTTATAA+TGG | - | chr7.2:4190364-4190383 | None:intergenic | 15.0% |
| !! | ATATTCATCATAACATAAAA+TGG | - | chr7.2:4191825-4191844 | None:intergenic | 15.0% |
| !! | ATTTGAAGAATTTAATTAGA+TGG | + | chr7.2:4191917-4191936 | MS.gene23126:intron | 15.0% |
| !!! | AATGATCTATCTTATTTTAT+GGG | - | chr7.2:4191684-4191703 | None:intergenic | 15.0% |
| !!! | AGTATTTTTTATGATTTGTA+GGG | + | chr7.2:4192189-4192208 | MS.gene23126:intron | 15.0% |
| !!! | ATTTTATAAGACATAGAAAA+TGG | - | chr7.2:4189442-4189461 | None:intergenic | 15.0% |
| !!! | TAATGATCTATCTTATTTTA+TGG | - | chr7.2:4191685-4191704 | None:intergenic | 15.0% |
| !!! | TAGTATTTTTTATGATTTGT+AGG | + | chr7.2:4192188-4192207 | MS.gene23126:intron | 15.0% |
| !! | AAAAAATGTTTATGATTGTG+TGG | + | chr7.2:4190587-4190606 | MS.gene23126:intron | 20.0% |
| !! | AAATTTCCTATGAATTAAGT+TGG | - | chr7.2:4191434-4191453 | None:intergenic | 20.0% |
| !! | AACTTTGACATTAACAAAAA+TGG | - | chr7.2:4190402-4190421 | None:intergenic | 20.0% |
| !! | AATGGGTATAATTTCATAAA+AGG | - | chr7.2:4191519-4191538 | None:intergenic | 20.0% |
| !! | ACATGTATAATTTCAAAAAG+GGG | + | chr7.2:4192159-4192178 | MS.gene23126:intron | 20.0% |
| !! | AGCTTAATTATCAACAAAAA+AGG | - | chr7.2:4189934-4189953 | None:intergenic | 20.0% |
| !! | ATGATGAATATACATAAAGT+CGG | + | chr7.2:4191834-4191853 | MS.gene23126:intron | 20.0% |
| !! | ATGGGTATAATTTCATAAAA+GGG | - | chr7.2:4191518-4191537 | None:intergenic | 20.0% |
| !! | ATTCAACAAGTATATGAATT+AGG | - | chr7.2:4192251-4192270 | None:intergenic | 20.0% |
| !! | ATTTCATAAAAGGGTAAAAT+TGG | - | chr7.2:4191509-4191528 | None:intergenic | 20.0% |
| !! | CTTTAATATCAATATACTGA+GGG | + | chr7.2:4190530-4190549 | MS.gene23126:intron | 20.0% |
| !! | GAACATGTATAATTTCAAAA+AGG | + | chr7.2:4192157-4192176 | MS.gene23126:intron | 20.0% |
| !! | GTCAAAGTTAATAACATATA+AGG | + | chr7.2:4190413-4190432 | MS.gene23126:intron | 20.0% |
| !! | GTTAATAACATATAAGGATT+TGG | + | chr7.2:4190419-4190438 | MS.gene23126:intron | 20.0% |
| !! | TAATTTGAATTTGATATGCA+GGG | + | chr7.2:4189321-4189340 | MS.gene23126:intron | 20.0% |
| !! | TCTTTAATATCAATATACTG+AGG | + | chr7.2:4190529-4190548 | MS.gene23126:intron | 20.0% |
| !!! | AAATTACTTTTCAATGTATC+AGG | - | chr7.2:4189868-4189887 | None:intergenic | 20.0% |
| !!! | ATGATCTATCTTATTTTATG+GGG | - | chr7.2:4191683-4191702 | None:intergenic | 20.0% |
| !!! | GTATTTTTTATGATTTGTAG+GGG | + | chr7.2:4192190-4192209 | MS.gene23126:intron | 20.0% |
| !!! | TCATCAATTATAAGAGATTT+TGG | + | chr7.2:4191231-4191250 | MS.gene23126:intron | 20.0% |
| !!! | TTAATTTGAATTTGATATGC+AGG | + | chr7.2:4189320-4189339 | MS.gene23126:intron | 20.0% |
| ! | AAATAATAAAGGGGAAAATG+TGG | - | chr7.2:4191890-4191909 | None:intergenic | 25.0% |
| ! | AATTTGAATTTGATATGCAG+GGG | + | chr7.2:4189322-4189341 | MS.gene23126:intron | 25.0% |
| ! | ATAAGACATAGAAAATGGAA+TGG | - | chr7.2:4189437-4189456 | None:intergenic | 25.0% |
| ! | ATTCTATCTCCATATGAAAA+TGG | - | chr7.2:4189822-4189841 | None:intergenic | 25.0% |
| ! | GTAAAATTGGCATTTCATTA+TGG | - | chr7.2:4191496-4191515 | None:intergenic | 25.0% |
| ! | TCTCTATCAATTCATATTGA+CGG | - | chr7.2:4191994-4192013 | None:intergenic | 25.0% |
| ! | TTAAAATAAAATACACTGCG+AGG | - | chr7.2:4189633-4189652 | None:intergenic | 25.0% |
| ! | TTATGTGATTATTGTGATCA+AGG | + | chr7.2:4189491-4189510 | MS.gene23126:intron | 25.0% |
| !! | AATTTTATTCCTGGACTTTA+TGG | - | chr7.2:4190066-4190085 | None:intergenic | 25.0% |
| !! | ACTATGATCTAATTTTCTCA+TGG | + | chr7.2:4190906-4190925 | MS.gene23126:intron | 25.0% |
| !! | CTATGATCTAATTTTCTCAT+GGG | + | chr7.2:4190907-4190926 | MS.gene23126:intron | 25.0% |
| !! | TGGTTTGAATGGTATATTTT+TGG | + | chr7.2:4191276-4191295 | MS.gene23126:intron | 25.0% |
| !! | TTCATATACTTGTTGAATTC+AGG | + | chr7.2:4192253-4192272 | MS.gene23126:intron | 25.0% |
| !! | TTTGTGTTGTATTTTCAATC+TGG | + | chr7.2:4192083-4192102 | MS.gene23126:intron | 25.0% |
| !! | TTTTCAATTCCAGAAACATA+TGG | - | chr7.2:4191557-4191576 | None:intergenic | 25.0% |
| !!! | TAGATTTTATTTTTCACGCT+AGG | + | chr7.2:4191703-4191722 | MS.gene23126:intron | 25.0% |
| !!! | TGCTCTAAAAACACAAATAT+TGG | - | chr7.2:4191146-4191165 | None:intergenic | 25.0% |
| !!! | TTTGGAACTAATTTTATTCC+TGG | - | chr7.2:4190075-4190094 | None:intergenic | 25.0% |
| !!! | TTTTAGAGTAGATAGAGATT+AGG | - | chr7.2:4189255-4189274 | None:intergenic | 25.0% |
| !!! | TTTTGGTGTCTATTTTAGAT+TGG | + | chr7.2:4191248-4191267 | MS.gene23126:intron | 25.0% |
| AAACATATGGTTATGGTGAT+GGG | - | chr7.2:4191544-4191563 | None:intergenic | 30.0% | |
| AATTATAGTCCTAGACCTTA+CGG | - | chr7.2:4189766-4189785 | None:intergenic | 30.0% | |
| ACTTATAATGCGAATACATG+TGG | + | chr7.2:4189956-4189975 | MS.gene23126:intron | 30.0% | |
| AGGTAGATATCATTGGATTT+AGG | - | chr7.2:4189396-4189415 | None:intergenic | 30.0% | |
| ATAGCATAAAACACACACTA+AGG | - | chr7.2:4190005-4190024 | None:intergenic | 30.0% | |
| ATCAACTTTGACAGAGAAAT+TGG | - | chr7.2:4190798-4190817 | None:intergenic | 30.0% | |
| ATGAAGCCAACTTAATTCAT+AGG | + | chr7.2:4191425-4191444 | MS.gene23126:intron | 30.0% | |
| ATGCATATACTTAGTCCTAA+TGG | - | chr7.2:4190131-4190150 | None:intergenic | 30.0% | |
| ATGGTTAAAAGTAACATCAC+TGG | - | chr7.2:4190487-4190506 | None:intergenic | 30.0% | |
| ATTCCAGAAACATATGGTTA+TGG | - | chr7.2:4191551-4191570 | None:intergenic | 30.0% | |
| GAGAAAGGGAAATTGATTAA+AGG | - | chr7.2:4191641-4191660 | None:intergenic | 30.0% | |
| GTTGGAACTAATTATATTCC+TGG | - | chr7.2:4190277-4190296 | None:intergenic | 30.0% | |
| TATTAAAAATTGCTGCCCTT+AGG | + | chr7.2:4191011-4191030 | MS.gene23126:CDS | 30.0% | |
| TGAAAAATCAAATCCGTTGA+AGG | - | chr7.2:4191794-4191813 | None:intergenic | 30.0% | |
| TGAATTGATAGAGACATTCT+TGG | + | chr7.2:4192000-4192019 | MS.gene23126:intron | 30.0% | |
| TGATACGAAGAAGATAACTA+TGG | + | chr7.2:4191943-4191962 | MS.gene23126:intron | 30.0% | |
| TGGTTAAAAGTAACATCACT+GGG | - | chr7.2:4190486-4190505 | None:intergenic | 30.0% | |
| TTGGAACTAATTGTATTCCT+TGG | - | chr7.2:4189594-4189613 | None:intergenic | 30.0% | |
| ! | AAATGTGTTTTCGATCAACT+TGG | - | chr7.2:4190198-4190217 | None:intergenic | 30.0% |
| ! | AAGCCTTATGTAAGATCAAA+GGG | + | chr7.2:4192356-4192375 | MS.gene23126:CDS | 30.0% |
| ! | ACTTTTCAATGTATCAGGAA+TGG | - | chr7.2:4189863-4189882 | None:intergenic | 30.0% |
| ! | ATTAAAGGAGTGTGATTGAT+AGG | - | chr7.2:4191626-4191645 | None:intergenic | 30.0% |
| ! | CATTCATGAATTGATAGCAA+AGG | - | chr7.2:4191736-4191755 | None:intergenic | 30.0% |
| ! | CATTTCATTATGGTTTGTAG+GGG | - | chr7.2:4191486-4191505 | None:intergenic | 30.0% |
| ! | GATATCATTGGATTTAGGTT+CGG | - | chr7.2:4189391-4189410 | None:intergenic | 30.0% |
| ! | GCATTTCATTATGGTTTGTA+GGG | - | chr7.2:4191487-4191506 | None:intergenic | 30.0% |
| !! | GTCTTCTCTGTATTTAGTTT+TGG | + | chr7.2:4189291-4189310 | MS.gene23126:intron | 30.0% |
| !! | TAGGTGTTTGTTGTTGATAT+AGG | + | chr7.2:4190450-4190469 | MS.gene23126:intron | 30.0% |
| !! | TCTATTTTAGATTGGAGACT+TGG | + | chr7.2:4191256-4191275 | MS.gene23126:intron | 30.0% |
| AACTTTGACAGAGAAATTGG+AGG | - | chr7.2:4190795-4190814 | None:intergenic | 35.0% | |
| AATTATATTCCTGGACCTTC+CGG | - | chr7.2:4190268-4190287 | None:intergenic | 35.0% | |
| AGAAGATAACTATGGAACTG+AGG | + | chr7.2:4191951-4191970 | MS.gene23126:intron | 35.0% | |
| ATACTTAGTCCTAATGGTGA+TGG | - | chr7.2:4190125-4190144 | None:intergenic | 35.0% | |
| ATCATAATTGATCCCCATAC+CGG | - | chr7.2:4192032-4192051 | None:intergenic | 35.0% | |
| ATCCATTGCGTCATTATGAT+TGG | + | chr7.2:4191185-4191204 | MS.gene23126:intron | 35.0% | |
| ATCTGAAGAAGTGAGAGAAA+GGG | - | chr7.2:4191655-4191674 | None:intergenic | 35.0% | |
| ATCTTACATAAGGCTTGGAA+TGG | - | chr7.2:4192352-4192371 | None:intergenic | 35.0% | |
| ATGGGATTATTGTGTTATGC+AGG | + | chr7.2:4190925-4190944 | MS.gene23126:intron | 35.0% | |
| CTTATGTAAGATCAAAGGGA+AGG | + | chr7.2:4192360-4192379 | MS.gene23126:CDS | 35.0% | |
| CTTCCCTTTGATCTTACATA+AGG | - | chr7.2:4192362-4192381 | None:intergenic | 35.0% | |
| CTTTGATCTTACATAAGGCT+TGG | - | chr7.2:4192357-4192376 | None:intergenic | 35.0% | |
| GAAACATATGGTTATGGTGA+TGG | - | chr7.2:4191545-4191564 | None:intergenic | 35.0% | |
| GATTATTGTGTTATGCAGGA+CGG | + | chr7.2:4190929-4190948 | MS.gene23126:intron | 35.0% | |
| GTATGGGGATCAATTATGAT+AGG | + | chr7.2:4192032-4192051 | MS.gene23126:intron | 35.0% | |
| TAATGACGCAATGGATAGTA+AGG | - | chr7.2:4191181-4191200 | None:intergenic | 35.0% | |
| TATATCGCTTCCTTGTTAGA+AGG | + | chr7.2:4190709-4190728 | MS.gene23126:CDS | 35.0% | |
| TCACCATAACCATATGTTTC+TGG | + | chr7.2:4191545-4191564 | MS.gene23126:intron | 35.0% | |
| TCATGTAATCAGCATTAGCA+TGG | - | chr7.2:4190506-4190525 | None:intergenic | 35.0% | |
| TCCATTGCGTCATTATGATT+GGG | + | chr7.2:4191186-4191205 | MS.gene23126:intron | 35.0% | |
| TGCAACACATGGAATTAGAA+TGG | - | chr7.2:4190681-4190700 | None:intergenic | 35.0% | |
| TGTTGTTGATATAGGACTTG+AGG | + | chr7.2:4190458-4190477 | MS.gene23126:intron | 35.0% | |
| TTGGCTTCATAAAAGCTTGT+TGG | - | chr7.2:4191415-4191434 | None:intergenic | 35.0% | |
| ! | AAAGTTGATCGAGTACATGA+AGG | + | chr7.2:4190809-4190828 | MS.gene23126:CDS | 35.0% |
| ! | AAGTTGATCGAGTACATGAA+GGG | + | chr7.2:4190810-4190829 | MS.gene23126:CDS | 35.0% |
| ! | AGGGCAGCAATTTTTAATAC+TGG | - | chr7.2:4191010-4191029 | None:intergenic | 35.0% |
| ! | CAAGCCTTATGTAAGATCAA+AGG | + | chr7.2:4192355-4192374 | MS.gene23126:CDS | 35.0% |
| ! | GGCATTTCATTATGGTTTGT+AGG | - | chr7.2:4191488-4191507 | None:intergenic | 35.0% |
| ! | GGGCAGCAATTTTTAATACT+GGG | - | chr7.2:4191009-4191028 | None:intergenic | 35.0% |
| ! | TAAGGATTTGGCTTCATGAT+AGG | + | chr7.2:4190431-4190450 | MS.gene23126:intron | 35.0% |
| ! | TTTATGATTTGTAGGGGTAG+AGG | + | chr7.2:4192196-4192215 | MS.gene23126:intron | 35.0% |
| !! | AATTGTATTCCTTGGCCTTA+CGG | - | chr7.2:4189586-4189605 | None:intergenic | 35.0% |
| AAAGAGGAAACACATGCTGA+TGG | + | chr7.2:4192132-4192151 | MS.gene23126:intron | 40.0% | |
| AAAGGGAAGGAAACAAGAGA+AGG | + | chr7.2:4192373-4192392 | MS.gene23126:CDS | 40.0% | |
| AAGAGGAAACACATGCTGAT+GGG | + | chr7.2:4192133-4192152 | MS.gene23126:intron | 40.0% | |
| AATCAAATCCGTTGAAGGAG+AGG | - | chr7.2:4191789-4191808 | None:intergenic | 40.0% | |
| AATGTATCAGGAATGGTTCC+TGG | - | chr7.2:4189856-4189875 | None:intergenic | 40.0% | |
| ACTTTATGGTCTCATAGAGC+TGG | - | chr7.2:4190052-4190071 | None:intergenic | 40.0% | |
| AGAGGAAGAGTAGAGGATTT+AGG | + | chr7.2:4192405-4192424 | MS.gene23126:CDS | 40.0% | |
| AGGGAAGCAGTAAAACACTT+TGG | + | chr7.2:4192302-4192321 | MS.gene23126:CDS | 40.0% | |
| AGTCTCAGACAAATGTGTGT+TGG | - | chr7.2:4190295-4190314 | None:intergenic | 40.0% | |
| AGTTGATCGAGTACATGAAG+GGG | + | chr7.2:4190811-4190830 | MS.gene23126:CDS | 40.0% | |
| ATAGAATAGCTTCTTCAGCC+AGG | + | chr7.2:4189835-4189854 | MS.gene23126:intron | 40.0% | |
| ATAGCTGATTGTGCAACACA+TGG | - | chr7.2:4190692-4190711 | None:intergenic | 40.0% | |
| CTTTATGGTCTCATAGAGCT+GGG | - | chr7.2:4190051-4190070 | None:intergenic | 40.0% | |
| GACTGACAGCAATTTCAATG+CGG | + | chr7.2:4190731-4190750 | MS.gene23126:CDS | 40.0% | |
| GAGCTTGAGGTAGATATCAT+TGG | - | chr7.2:4189403-4189422 | None:intergenic | 40.0% | |
| GAGGAAGAGTAGAGGATTTA+GGG | + | chr7.2:4192406-4192425 | MS.gene23126:CDS | 40.0% | |
| GATCTGAAGAAGTGAGAGAA+AGG | - | chr7.2:4191656-4191675 | None:intergenic | 40.0% | |
| GGCTGTAACAGATGATATCA+GGG | + | chr7.2:4190973-4190992 | MS.gene23126:CDS | 40.0% | |
| GTTATGCAGGACGGTAAAAT+TGG | + | chr7.2:4190938-4190957 | MS.gene23126:intron | 40.0% | |
| TCCCAATCATAATGACGCAA+TGG | - | chr7.2:4191190-4191209 | None:intergenic | 40.0% | |
| TCTATGAGACCATAAAGTCC+AGG | + | chr7.2:4190054-4190073 | MS.gene23126:intron | 40.0% | |
| TGGTAAGCTCAACATAACCA+AGG | - | chr7.2:4191395-4191414 | None:intergenic | 40.0% | |
| TTCCTGTGAGTAGTTGTGAT+GGG | + | chr7.2:4191365-4191384 | MS.gene23126:intron | 40.0% | |
| TTGACAGAGAAATTGGAGGT+CGG | - | chr7.2:4190791-4190810 | None:intergenic | 40.0% | |
| ! | ATTATGGTTTGTAGGGGTAG+AGG | - | chr7.2:4191480-4191499 | None:intergenic | 40.0% |
| ! | CCTCTCAGTCCATTTTCATA+TGG | + | chr7.2:4189810-4189829 | MS.gene23126:intron | 40.0% |
| ! | GATTGGAGACTTGGTTTGAA+TGG | + | chr7.2:4191265-4191284 | MS.gene23126:intron | 40.0% |
| ! | TCATACCGTGTTTTGTCCAA+GGG | - | chr7.2:4191116-4191135 | None:intergenic | 40.0% |
| ! | TCATTTTGCCTCTCCTTCAA+CGG | + | chr7.2:4191778-4191797 | MS.gene23126:intron | 40.0% |
| !! | CCATATGAAAATGGACTGAG+AGG | - | chr7.2:4189813-4189832 | None:intergenic | 40.0% |
| !! | GGGCAAGTTGATCAAATGTT+AGG | - | chr7.2:4191084-4191103 | None:intergenic | 40.0% |
| !! | GGTAAAATTGGTGTCGTTGT+GGG | + | chr7.2:4190950-4190969 | MS.gene23126:CDS | 40.0% |
| !! | GTAAAATTGGTGTCGTTGTG+GGG | + | chr7.2:4190951-4190970 | MS.gene23126:CDS | 40.0% |
| !! | TAAAATTGGTGTCGTTGTGG+GGG | + | chr7.2:4190952-4190971 | MS.gene23126:CDS | 40.0% |
| AAATGGAATGGACCTTGACG+AGG | - | chr7.2:4189425-4189444 | None:intergenic | 45.0% | |
| AAGAGGCCCAAAGAATGCTA+GGG | + | chr7.2:4192283-4192302 | MS.gene23126:CDS | 45.0% | |
| AATGTGATCCCAGCTCTATG+AGG | + | chr7.2:4189560-4189579 | MS.gene23126:intron | 45.0% | |
| ACGTGCAAGAATAGAGAAGG+CGG | + | chr7.2:4191048-4191067 | MS.gene23126:CDS | 45.0% | |
| ACTGCTTCCCTAGCATTCTT+TGG | - | chr7.2:4192293-4192312 | None:intergenic | 45.0% | |
| AGAGGAAAGAGGAAGAGTAG+AGG | + | chr7.2:4192398-4192417 | MS.gene23126:CDS | 45.0% | |
| AGGCTCAGACAAATGTGTGT+TGG | - | chr7.2:4189613-4189632 | None:intergenic | 45.0% | |
| ATCCCATCACAACTACTCAC+AGG | - | chr7.2:4191370-4191389 | None:intergenic | 45.0% | |
| ATTCTTGGAGCTTTCCGGTA+TGG | + | chr7.2:4192015-4192034 | MS.gene23126:intron | 45.0% | |
| CTGCTTCCCTAGCATTCTTT+GGG | - | chr7.2:4192292-4192311 | None:intergenic | 45.0% | |
| CTTCCTGTGAGTAGTTGTGA+TGG | + | chr7.2:4191364-4191383 | MS.gene23126:intron | 45.0% | |
| GAGACATTCTTGGAGCTTTC+CGG | + | chr7.2:4192010-4192029 | MS.gene23126:intron | 45.0% | |
| GGGCTGTAACAGATGATATC+AGG | + | chr7.2:4190972-4190991 | MS.gene23126:CDS | 45.0% | |
| TAAGAGGCCCAAAGAATGCT+AGG | + | chr7.2:4192282-4192301 | MS.gene23126:CDS | 45.0% | |
| TAGCATTCTTTGGGCCTCTT+AGG | - | chr7.2:4192283-4192302 | None:intergenic | 45.0% | |
| TCTACTCTTCCTCTTTCCTC+TGG | - | chr7.2:4192399-4192418 | None:intergenic | 45.0% | |
| TCTCTCACACCATCACCATT+AGG | + | chr7.2:4190113-4190132 | MS.gene23126:intron | 45.0% | |
| TGAATTCAGGTCCTCCTAAG+AGG | + | chr7.2:4192266-4192285 | MS.gene23126:intron | 45.0% | |
| TGCTGTCAGTCCTTCTAACA+AGG | - | chr7.2:4190722-4190741 | None:intergenic | 45.0% | |
| TTCTTGGAGCTTTCCGGTAT+GGG | + | chr7.2:4192016-4192035 | MS.gene23126:intron | 45.0% | |
| ! | AGGGGTAGAGGTATAAGTGT+TGG | - | chr7.2:4191468-4191487 | None:intergenic | 45.0% |
| ! | CACACATTTGTCTGAGACTC+TGG | + | chr7.2:4190296-4190315 | MS.gene23126:intron | 45.0% |
| ! | CATACCGTGTTTTGTCCAAG+GGG | - | chr7.2:4191115-4191134 | None:intergenic | 45.0% |
| ! | CTCATACCGTGTTTTGTCCA+AGG | - | chr7.2:4191117-4191136 | None:intergenic | 45.0% |
| ! | GGATTTAGGTTCGGTTCGTT+TGG | - | chr7.2:4189382-4189401 | None:intergenic | 45.0% |
| ! | GGGGTAGAGGTATAAGTGTT+GGG | - | chr7.2:4191467-4191486 | None:intergenic | 45.0% |
| ! | GGGTAGAGGTATAAGTGTTG+GGG | - | chr7.2:4191466-4191485 | None:intergenic | 45.0% |
| ! | TAGTTGTGATGGGATAGCCT+TGG | + | chr7.2:4191375-4191394 | MS.gene23126:intron | 45.0% |
| !! | AGGTATAAGTGTTGGGGTGT+AGG | - | chr7.2:4191460-4191479 | None:intergenic | 45.0% |
| !! | CGGTAAAATTGGTGTCGTTG+TGG | + | chr7.2:4190949-4190968 | MS.gene23126:CDS | 45.0% |
| !! | GGTATAAGTGTTGGGGTGTA+GGG | - | chr7.2:4191459-4191478 | None:intergenic | 45.0% |
| !! | GGTTATGGTGATGGGTGAAT+GGG | - | chr7.2:4191536-4191555 | None:intergenic | 45.0% |
| !! | TGGTTATGGTGATGGGTGAA+TGG | - | chr7.2:4191537-4191556 | None:intergenic | 45.0% |
| !! | TAAATAAATAAATACAAAAA+CGG | - | chr7.2:4189470-4189489 | None:intergenic | 5.0% |
| !!! | AAATTTTGTAAAAATAATAA+AGG | - | chr7.2:4191901-4191920 | None:intergenic | 5.0% |
| !!! | AATTTTGTAAAAATAATAAA+GGG | - | chr7.2:4191900-4191919 | None:intergenic | 5.0% |
| AAACACTTTGGTCGTGCTCC+TGG | + | chr7.2:4192314-4192333 | MS.gene23126:CDS | 50.0% | |
| AAGAGAAGGCCAGAGGAAAG+AGG | + | chr7.2:4192387-4192406 | MS.gene23126:CDS | 50.0% | |
| AGCTCCCCTTGGACAAAACA+CGG | + | chr7.2:4191108-4191127 | MS.gene23126:CDS | 50.0% | |
| AGGAAACAAGAGAAGGCCAG+AGG | + | chr7.2:4192380-4192399 | MS.gene23126:CDS | 50.0% | |
| AGGGGATCGATCTCAAAGCT+GGG | + | chr7.2:4189340-4189359 | MS.gene23126:intron | 50.0% | |
| AGGTATAGCTGTTGGGGTGT+AGG | + | chr7.2:4192216-4192235 | MS.gene23126:intron | 50.0% | |
| CAAGCGCTTGTTCATGAGCA+AGG | + | chr7.2:4190761-4190780 | MS.gene23126:CDS | 50.0% | |
| CATTCTTTGGGCCTCTTAGG+AGG | - | chr7.2:4192280-4192299 | None:intergenic | 50.0% | |
| CGTGCAAGAATAGAGAAGGC+GGG | + | chr7.2:4191049-4191068 | MS.gene23126:CDS | 50.0% | |
| GATCGAGTACATGAAGGGGA+AGG | + | chr7.2:4190815-4190834 | MS.gene23126:CDS | 50.0% | |
| GGCACGTGCAAGAATAGAGA+AGG | + | chr7.2:4191045-4191064 | MS.gene23126:CDS | 50.0% | |
| GGTATAGCTGTTGGGGTGTA+GGG | + | chr7.2:4192217-4192236 | MS.gene23126:intron | 50.0% | |
| TAAGGCTTGGAATGGCTGTG+TGG | - | chr7.2:4192344-4192363 | None:intergenic | 50.0% | |
| TCTATGAGGCCGTAAGGTCT+AGG | + | chr7.2:4189754-4189773 | MS.gene23126:intron | 50.0% | |
| TCTTGGAGCTTTCCGGTATG+GGG | + | chr7.2:4192017-4192036 | MS.gene23126:intron | 50.0% | |
| TGATCCCAGCTCTATGAGAC+CGG | + | chr7.2:4190044-4190063 | MS.gene23126:intron | 50.0% | |
| TGCAGAGGCTCAGACAAGTT+TGG | - | chr7.2:4190093-4190112 | None:intergenic | 50.0% | |
| TGCCCTTAGGTTCACAGAGA+CGG | + | chr7.2:4191024-4191043 | MS.gene23126:CDS | 50.0% | |
| TGCCGTCTCTGTGAACCTAA+GGG | - | chr7.2:4191029-4191048 | None:intergenic | 50.0% | |
| TTTGTCCAAGGGGAGCTCTA+AGG | - | chr7.2:4191105-4191124 | None:intergenic | 50.0% | |
| ! | AGGGGTAGAGGTATAGCTGT+TGG | + | chr7.2:4192208-4192227 | MS.gene23126:intron | 50.0% |
| ! | GGGGTAGAGGTATAGCTGTT+GGG | + | chr7.2:4192209-4192228 | MS.gene23126:intron | 50.0% |
| ! | GGGTAGAGGTATAGCTGTTG+GGG | + | chr7.2:4192210-4192229 | MS.gene23126:intron | 50.0% |
| ! | TGATGGTGTGAGAGATGCAG+AGG | - | chr7.2:4190108-4190127 | None:intergenic | 50.0% |
| ! | TTGTCCAAGGGGAGCTCTAA+GGG | - | chr7.2:4191104-4191123 | None:intergenic | 50.0% |
| ACCTTACGGCCTCATAGAGC+TGG | - | chr7.2:4189752-4189771 | None:intergenic | 55.0% | |
| ACCTTCCGGTCTCATAGAGC+TGG | - | chr7.2:4190254-4190273 | None:intergenic | 55.0% | |
| CAGGGGATCGATCTCAAAGC+TGG | + | chr7.2:4189339-4189358 | MS.gene23126:intron | 55.0% | |
| CCTTACGGCCTCATAGAGCT+GGG | - | chr7.2:4189571-4189590 | None:intergenic | 55.0% | |
| CCTTCCGGTCTCATAGAGCT+GGG | - | chr7.2:4190253-4190272 | None:intergenic | 55.0% | |
| CTACCTCAAGCTCCTCGTCA+AGG | + | chr7.2:4189410-4189429 | MS.gene23126:CDS | 55.0% | |
| GCAAGAATAGAGAAGGCGGG+TGG | + | chr7.2:4191052-4191071 | MS.gene23126:CDS | 55.0% | |
| GGGATCGATCTCAAAGCTGG+GGG | + | chr7.2:4189342-4189361 | MS.gene23126:CDS | 55.0% | |
| GGGGATCGATCTCAAAGCTG+GGG | + | chr7.2:4189341-4189360 | MS.gene23126:intron | 55.0% | |
| GTGCCGTCTCTGTGAACCTA+AGG | - | chr7.2:4191030-4191049 | None:intergenic | 55.0% | |
| TCTATGAGACCGGAAGGTCC+AGG | + | chr7.2:4190256-4190275 | MS.gene23126:intron | 55.0% | |
| TCTATGAGGCCGTAAGGCCA+AGG | + | chr7.2:4189574-4189593 | MS.gene23126:intron | 55.0% | |
| CCCAGCTCTATGAGACCGGA+AGG | + | chr7.2:4190250-4190269 | MS.gene23126:intron | 60.0% | |
| CCCAGCTCTATGAGGCCGTA+AGG | + | chr7.2:4189568-4189587 | MS.gene23126:intron | 60.0% | |
| CTTGCCCTTAGAGCTCCCCT+TGG | + | chr7.2:4191097-4191116 | MS.gene23126:CDS | 60.0% | |
| GAATGGCTGTGTGGCACACC+AGG | - | chr7.2:4192335-4192354 | None:intergenic | 60.0% | |
| GCCTTACGGCCTCATAGAGC+TGG | - | chr7.2:4189572-4189591 | None:intergenic | 60.0% | |
| GGACCTTGACGAGGAGCTTG+AGG | - | chr7.2:4189416-4189435 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4189235 | 4192433 | 4189235 | ID=MS.gene23126 |
| chr7.2 | mRNA | 4189235 | 4192433 | 4189235 | ID=MS.gene23126.t1;Parent=MS.gene23126 |
| chr7.2 | exon | 4189235 | 4189237 | 4189235 | ID=MS.gene23126.t1.exon1;Parent=MS.gene23126.t1 |
| chr7.2 | CDS | 4189235 | 4189237 | 4189235 | ID=cds.MS.gene23126.t1;Parent=MS.gene23126.t1 |
| chr7.2 | exon | 4189342 | 4189431 | 4189342 | ID=MS.gene23126.t1.exon2;Parent=MS.gene23126.t1 |
| chr7.2 | CDS | 4189342 | 4189431 | 4189342 | ID=cds.MS.gene23126.t1;Parent=MS.gene23126.t1 |
| chr7.2 | exon | 4190708 | 4190836 | 4190708 | ID=MS.gene23126.t1.exon3;Parent=MS.gene23126.t1 |
| chr7.2 | CDS | 4190708 | 4190836 | 4190708 | ID=cds.MS.gene23126.t1;Parent=MS.gene23126.t1 |
| chr7.2 | exon | 4190947 | 4191129 | 4190947 | ID=MS.gene23126.t1.exon4;Parent=MS.gene23126.t1 |
| chr7.2 | CDS | 4190947 | 4191129 | 4190947 | ID=cds.MS.gene23126.t1;Parent=MS.gene23126.t1 |
| chr7.2 | exon | 4192275 | 4192433 | 4192275 | ID=MS.gene23126.t1.exon5;Parent=MS.gene23126.t1 |
| chr7.2 | CDS | 4192275 | 4192433 | 4192275 | ID=cds.MS.gene23126.t1;Parent=MS.gene23126.t1 |
| Gene Sequence |
| Protein sequence |
