Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40831.t1 | XP_003591163.1 | 98.9 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 8.70E-95 | 356.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40831.t1 | Q940B0 | 84.0 | 187 | 30 | 0 | 1 | 187 | 1 | 187 | 6.5e-83 | 308.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40831.t1 | G7I8R4 | 98.9 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 6.3e-95 | 356.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049876 | MS.gene40831 | 0.820658 | 6.10E-53 | -1.69E-46 |
| MS.gene050290 | MS.gene40831 | 0.819316 | 1.24E-52 | -1.69E-46 |
| MS.gene050791 | MS.gene40831 | 0.828181 | 1.04E-54 | -1.69E-46 |
| MS.gene050912 | MS.gene40831 | 0.805366 | 1.38E-49 | -1.69E-46 |
| MS.gene051904 | MS.gene40831 | 0.820807 | 5.64E-53 | -1.69E-46 |
| MS.gene052412 | MS.gene40831 | 0.814215 | 1.73E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene40831 | 0.827132 | 1.85E-54 | -1.69E-46 |
| MS.gene054937 | MS.gene40831 | 0.824108 | 9.65E-54 | -1.69E-46 |
| MS.gene056917 | MS.gene40831 | 0.851033 | 1.16E-60 | -1.69E-46 |
| MS.gene057092 | MS.gene40831 | 0.855001 | 8.45E-62 | -1.69E-46 |
| MS.gene057235 | MS.gene40831 | 0.825141 | 5.51E-54 | -1.69E-46 |
| MS.gene060856 | MS.gene40831 | 0.817375 | 3.41E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40831 | MS.gene26792 | PPI |
| MS.gene40831 | MS.gene22957 | PPI |
| MS.gene40831 | MS.gene23126 | PPI |
| MS.gene40831 | MS.gene06999 | PPI |
| MS.gene025709 | MS.gene40831 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40831.t1 | MTR_1g083460 | 98.930 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 7.86e-133 | 370 |
| MS.gene40831.t1 | MTR_7g108805 | 92.021 | 188 | 14 | 1 | 1 | 187 | 1 | 188 | 2.42e-122 | 343 |
| MS.gene40831.t1 | MTR_7g112880 | 85.561 | 187 | 27 | 0 | 1 | 187 | 1 | 187 | 7.92e-117 | 329 |
| MS.gene40831.t1 | MTR_7g112880 | 82.836 | 134 | 23 | 0 | 54 | 187 | 1 | 134 | 7.48e-80 | 234 |
| MS.gene40831.t1 | MTR_4g005170 | 94.545 | 55 | 3 | 0 | 133 | 187 | 582 | 636 | 1.09e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40831.t1 | AT5G27850 | 83.957 | 187 | 30 | 0 | 1 | 187 | 1 | 187 | 1.12e-113 | 321 |
| MS.gene40831.t1 | AT3G05590 | 83.422 | 187 | 31 | 0 | 1 | 187 | 1 | 187 | 3.73e-113 | 320 |
| MS.gene40831.t1 | AT2G47570 | 76.344 | 186 | 43 | 1 | 3 | 187 | 1 | 186 | 1.50e-100 | 288 |
| MS.gene40831.t1 | AT3G05590 | 82.836 | 134 | 23 | 0 | 54 | 187 | 1 | 134 | 3.76e-79 | 232 |
| MS.gene40831.t1 | AT3G05590 | 82.836 | 134 | 23 | 0 | 54 | 187 | 1 | 134 | 3.76e-79 | 232 |
| MS.gene40831.t1 | AT5G27850 | 82.090 | 134 | 24 | 0 | 54 | 187 | 1 | 134 | 1.34e-77 | 228 |
Find 59 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCGATCAGTTGGCTCTT+AGG | 0.165548 | 1.2:-59879227 | MS.gene40831:CDS |
| TATTCTTGCCCTTGCCTTCT+CGG | 0.231639 | 1.2:+59879275 | None:intergenic |
| AGATAGATATCATTGGATTT+TGG | 0.265066 | 1.2:+59880409 | None:intergenic |
| ACTGCTTCACGAGCATTCTT+TGG | 0.271538 | 1.2:+59878535 | None:intergenic |
| TGATATCTATCTCAAGCTTT+TGG | 0.326212 | 1.2:-59880398 | MS.gene40831:CDS |
| GTTGGCTCTTAGGGCCCCTC+TGG | 0.332505 | 1.2:-59879217 | MS.gene40831:CDS |
| AGCTTTATCGGTTCCTTGTT+CGG | 0.346996 | 1.2:-59879596 | MS.gene40831:CDS |
| CGGTTCCTTGTTCGGAGAAC+TGG | 0.351555 | 1.2:-59879588 | MS.gene40831:CDS |
| TGGATGCAGGTCCTTCTTAG+AGG | 0.370140 | 1.2:-59878559 | MS.gene40831:intron |
| ATTCGATCAGTTGGCTCTTA+GGG | 0.374062 | 1.2:-59879226 | MS.gene40831:CDS |
| CACACCAAACCTTATGTTAG+AGG | 0.380593 | 1.2:-59878475 | MS.gene40831:CDS |
| CTTGACTTTCCTCTAACATA+AGG | 0.385554 | 1.2:+59878466 | None:intergenic |
| CTGCTTCACGAGCATTCTTT+GGG | 0.387440 | 1.2:+59878536 | None:intergenic |
| CCTGAGTGCTGTAACCTTGA+TGG | 0.411463 | 1.2:+59879302 | None:intergenic |
| CTTTCCTCTAACATAAGGTT+TGG | 0.422789 | 1.2:+59878471 | None:intergenic |
| GGTAAAATTGCTGTCGTGGT+GGG | 0.429219 | 1.2:-59879363 | MS.gene40831:CDS |
| TAAGGTTTGGTGTGGCTTTG+TGG | 0.445512 | 1.2:+59878484 | None:intergenic |
| AAGCTTGAGATAGATATCAT+TGG | 0.447582 | 1.2:+59880402 | None:intergenic |
| AAGCACTTTGGTCGTGCTCC+TGG | 0.452826 | 1.2:-59878511 | MS.gene40831:CDS |
| TTTGTAGGGTATCGATCTTA+AGG | 0.453950 | 1.2:-59880467 | MS.gene40831:intron |
| CATTCTTTGGGCCTCTAAGA+AGG | 0.473658 | 1.2:+59878548 | None:intergenic |
| AAGGTTTGGTGTGGCTTTGT+GGG | 0.474825 | 1.2:+59878485 | None:intergenic |
| ATCAACCTTGACAAAGATAG+TGG | 0.491899 | 1.2:+59879507 | None:intergenic |
| GTGTGGCTTTGTGGGACACC+AGG | 0.492305 | 1.2:+59878493 | None:intergenic |
| GTAAAATTGCTGTCGTGGTG+GGG | 0.493129 | 1.2:-59879362 | MS.gene40831:CDS |
| CAAGAGGTTGTTTATGAGCA+AGG | 0.493391 | 1.2:-59879541 | MS.gene40831:CDS |
| CTCTAACATAAGGTTTGGTG+TGG | 0.503784 | 1.2:+59878476 | None:intergenic |
| ATGCTTAACATTCGATCAGT+TGG | 0.511340 | 1.2:-59879235 | MS.gene40831:CDS |
| TAATGAAGTTCCAGCCATCA+AGG | 0.511887 | 1.2:-59879316 | MS.gene40831:CDS |
| TTGAGAAGGCTAGAGGAAAG+AGG | 0.516701 | 1.2:-59878438 | MS.gene40831:CDS |
| CGTGAAGCAGTTAAGCACTT+TGG | 0.533436 | 1.2:-59878523 | MS.gene40831:CDS |
| TTGGCTCTTAGGGCCCCTCT+GGG | 0.540521 | 1.2:-59879216 | MS.gene40831:CDS |
| AGGTAAAATTGCTGTCGTGG+TGG | 0.541180 | 1.2:-59879364 | MS.gene40831:CDS |
| TAAAATTGCTGTCGTGGTGG+GGG | 0.545281 | 1.2:-59879361 | MS.gene40831:CDS |
| TCAGGTTTACCGAGAAGGCA+AGG | 0.546899 | 1.2:-59879284 | MS.gene40831:CDS |
| TCAATGCTGTTATACTCAAG+AGG | 0.549427 | 1.2:-59879557 | MS.gene40831:CDS |
| TGCTGCCAGTTCTCCGAACA+AGG | 0.549972 | 1.2:+59879583 | None:intergenic |
| AGGCAAGGGCAAGAATAGAA+AGG | 0.551093 | 1.2:-59879269 | MS.gene40831:CDS |
| AGTGCTGTAACCTTGATGGC+TGG | 0.551868 | 1.2:+59879306 | None:intergenic |
| GGCAAGGGCAAGAATAGAAA+GGG | 0.553936 | 1.2:-59879268 | MS.gene40831:CDS |
| AGATTGACAAACCTTGCCAT+TGG | 0.555253 | 1.2:+59879476 | None:intergenic |
| TAGGGTATCGATCTTAAGGC+AGG | 0.555670 | 1.2:-59880463 | MS.gene40831:CDS |
| AGCACTCAGGTTTACCGAGA+AGG | 0.559032 | 1.2:-59879289 | MS.gene40831:CDS |
| CCATCAAGGTTACAGCACTC+AGG | 0.567655 | 1.2:-59879302 | MS.gene40831:CDS |
| AACCTCCACTATCTTTGTCA+AGG | 0.576324 | 1.2:-59879512 | MS.gene40831:CDS |
| GGCCCCTCTGGGACAAAACA+CGG | 0.583895 | 1.2:-59879205 | MS.gene40831:intron |
| AGGAAGATTGAGAAGGCTAG+AGG | 0.612753 | 1.2:-59878445 | MS.gene40831:CDS |
| AGGGCAAGAATAGAAAGGGC+TGG | 0.616183 | 1.2:-59879264 | MS.gene40831:CDS |
| CAGGTTTACCGAGAAGGCAA+GGG | 0.616460 | 1.2:-59879283 | MS.gene40831:CDS |
| GATCAAGTATACCAATGGCA+AGG | 0.626076 | 1.2:-59879487 | MS.gene40831:intron |
| AAAGTCAAGGAAGATTGAGA+AGG | 0.626317 | 1.2:-59878452 | MS.gene40831:CDS |
| TGGCTGGAACTTCATTAACA+CGG | 0.640444 | 1.2:+59879322 | None:intergenic |
| AGGTTGATCAAGTATACCAA+TGG | 0.643281 | 1.2:-59879492 | MS.gene40831:CDS |
| AACCTTGACAAAGATAGTGG+AGG | 0.643571 | 1.2:+59879510 | None:intergenic |
| GGAAGGTAAAATTGCTGTCG+TGG | 0.652028 | 1.2:-59879367 | MS.gene40831:CDS |
| AGAGGAAAGAGGAAGAGCAG+AGG | 0.670040 | 1.2:-59878427 | MS.gene40831:CDS |
| GGTATCGATCTTAAGGCAGG+AGG | 0.692243 | 1.2:-59880460 | MS.gene40831:CDS |
| CTTATGTTAGAGGAAAGTCA+AGG | 0.705037 | 1.2:-59878465 | MS.gene40831:CDS |
| GCAAGAATAGAAAGGGCTGG+TGG | 0.708893 | 1.2:-59879261 | MS.gene40831:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAATAATTT+AGG | + | chr1.2:59879024-59879043 | None:intergenic | 0.0% |
| !!! | GATTTTAATAATATAATACT+TGG | - | chr1.2:59880389-59880408 | MS.gene40831:intron | 10.0% |
| !!! | TATTATTGTTTTAAAAAACA+AGG | - | chr1.2:59879037-59879056 | MS.gene40831:intron | 10.0% |
| !!! | TGTTTTCAAAATATTATTAT+GGG | - | chr1.2:59878941-59878960 | MS.gene40831:intron | 10.0% |
| !! | AATGAAATATAACCAAAAAT+AGG | + | chr1.2:59878891-59878910 | None:intergenic | 15.0% |
| !! | AGTCAAAAAAAAAAATCATT+GGG | + | chr1.2:59878724-59878743 | None:intergenic | 15.0% |
| !! | TAGTCAAAAAAAAAAATCAT+TGG | + | chr1.2:59878725-59878744 | None:intergenic | 15.0% |
| !!! | AATCTTTTCTTAAAATTAAC+TGG | - | chr1.2:59879995-59880014 | MS.gene40831:intron | 15.0% |
| !!! | ATCTTTTCTTAAAATTAACT+GGG | - | chr1.2:59879996-59880015 | MS.gene40831:intron | 15.0% |
| !!! | CTGTTTTCAAAATATTATTA+TGG | - | chr1.2:59878940-59878959 | MS.gene40831:intron | 15.0% |
| !!! | GTTTTAGCTTTATAAAAAAA+TGG | + | chr1.2:59879209-59879228 | None:intergenic | 15.0% |
| !!! | TTAATAGAAGTGATTTTTAT+GGG | - | chr1.2:59879103-59879122 | MS.gene40831:intron | 15.0% |
| !!! | TTAATTTTAAGCAAAGATTT+AGG | + | chr1.2:59880120-59880139 | None:intergenic | 15.0% |
| !! | TAGATATATGAGAAAAATGA+GGG | + | chr1.2:59879239-59879258 | None:intergenic | 20.0% |
| !! | TCAGTTTACTATAGTTATAA+TGG | - | chr1.2:59879552-59879571 | MS.gene40831:CDS | 20.0% |
| !!! | AAGTTTAATTTATAATGCTG+AGG | - | chr1.2:59878772-59878791 | MS.gene40831:intron | 20.0% |
| !!! | AGTTTAATTTATAATGCTGA+GGG | - | chr1.2:59878773-59878792 | MS.gene40831:intron | 20.0% |
| !!! | GTTAATAGAAGTGATTTTTA+TGG | - | chr1.2:59879102-59879121 | MS.gene40831:intron | 20.0% |
| !!! | TATTGTTTTAAAAAACAAGG+AGG | - | chr1.2:59879040-59879059 | MS.gene40831:intron | 20.0% |
| !!! | TTACATTGAATTGTTTTGAT+TGG | - | chr1.2:59879336-59879355 | MS.gene40831:CDS | 20.0% |
| !!! | TTTTTGGTTATATTTCATTG+CGG | - | chr1.2:59878892-59878911 | MS.gene40831:intron | 20.0% |
| ! | AAGAAATAACATAAAGCTAC+AGG | + | chr1.2:59878654-59878673 | None:intergenic | 25.0% |
| ! | AAGGTTTGATAGAATGAAAA+AGG | - | chr1.2:59880347-59880366 | MS.gene40831:intron | 25.0% |
| ! | AATTCAAACGTAAGAAACAA+TGG | + | chr1.2:59878477-59878496 | None:intergenic | 25.0% |
| ! | AGAAATAACATAAAGCTACA+GGG | + | chr1.2:59878653-59878672 | None:intergenic | 25.0% |
| ! | ATAATATAATACTTGGATGC+AGG | - | chr1.2:59880396-59880415 | MS.gene40831:CDS | 25.0% |
| ! | CAAAAAGACGTTAAATAATC+AGG | + | chr1.2:59879884-59879903 | None:intergenic | 25.0% |
| ! | GTAGATATATGAGAAAAATG+AGG | + | chr1.2:59879240-59879259 | None:intergenic | 25.0% |
| ! | GTTGAAATGTAAGCAAAAAT+GGG | - | chr1.2:59878856-59878875 | MS.gene40831:intron | 25.0% |
| ! | TATAACTTTGATCTTGAACA+AGG | + | chr1.2:59880080-59880099 | None:intergenic | 25.0% |
| ! | TATAGTTGTGTTCTTTATTG+TGG | - | chr1.2:59880272-59880291 | MS.gene40831:intron | 25.0% |
| ! | TGCATAGGTAAATTTCAAAA+TGG | + | chr1.2:59879581-59879600 | None:intergenic | 25.0% |
| ! | TGTTGAAATGTAAGCAAAAA+TGG | - | chr1.2:59878855-59878874 | MS.gene40831:intron | 25.0% |
| ! | TTCTTAAAATTAACTGTCTG+TGG | - | chr1.2:59880001-59880020 | MS.gene40831:intron | 25.0% |
| !! | AGATAGATATCATTGGATTT+TGG | + | chr1.2:59878562-59878581 | None:intergenic | 25.0% |
| !! | TGTCATTGACAAACAATTTT+AGG | - | chr1.2:59878678-59878697 | MS.gene40831:intron | 25.0% |
| !! | TTTTCTTAAAATTAACTGGG+AGG | - | chr1.2:59880241-59880260 | MS.gene40831:intron | 25.0% |
| !!! | ATTTTGAAATTTACCTATGC+AGG | - | chr1.2:59879580-59879599 | MS.gene40831:CDS | 25.0% |
| !!! | TAGTTTTGTGTTCTTTATTG+TGG | - | chr1.2:59880034-59880053 | MS.gene40831:intron | 25.0% |
| !!! | TGATTGAACTTTTTAGAGTA+TGG | - | chr1.2:59879902-59879921 | MS.gene40831:intron | 25.0% |
| !!! | TTTTACATGATCAGCTTTAT+CGG | - | chr1.2:59879360-59879379 | MS.gene40831:CDS | 25.0% |
| AAGCTTGAGATAGATATCAT+TGG | + | chr1.2:59878569-59878588 | None:intergenic | 30.0% | |
| ACGTTTGAATTGAACTTTGT+AGG | - | chr1.2:59878486-59878505 | MS.gene40831:CDS | 30.0% | |
| CGTTTGAATTGAACTTTGTA+GGG | - | chr1.2:59878487-59878506 | MS.gene40831:CDS | 30.0% | |
| TATTATGGGTGTGTTTGTTT+AGG | - | chr1.2:59878955-59878974 | MS.gene40831:intron | 30.0% | |
| TGTGTAACTATTGTGATGTA+AGG | - | chr1.2:59880328-59880347 | MS.gene40831:intron | 30.0% | |
| TTGCTTACATTTCAACATAG+AGG | + | chr1.2:59878852-59878871 | None:intergenic | 30.0% | |
| ! | TGATATCTATCTCAAGCTTT+TGG | - | chr1.2:59878570-59878589 | MS.gene40831:intron | 30.0% |
| ! | TTTTCTCTACTCTCTAACAA+AGG | - | chr1.2:59880173-59880192 | MS.gene40831:intron | 30.0% |
| ! | TTTTTGACCCTAAAATGAGT+TGG | - | chr1.2:59878993-59879012 | MS.gene40831:intron | 30.0% |
| AAAGTCAAGGAAGATTGAGA+AGG | - | chr1.2:59880516-59880535 | MS.gene40831:intron | 35.0% | |
| ATCAACCTTGACAAAGATAG+TGG | + | chr1.2:59879464-59879483 | None:intergenic | 35.0% | |
| ATGCTTAACATTCGATCAGT+TGG | - | chr1.2:59879733-59879752 | MS.gene40831:intron | 35.0% | |
| ATTGTGGTCGAATATGTTTC+AGG | - | chr1.2:59880050-59880069 | MS.gene40831:intron | 35.0% | |
| CACTATAGTGATTCCTTTGT+TGG | + | chr1.2:59879947-59879966 | None:intergenic | 35.0% | |
| CTTATGTTAGAGGAAAGTCA+AGG | - | chr1.2:59880503-59880522 | MS.gene40831:intron | 35.0% | |
| CTTGACTTTCCTCTAACATA+AGG | + | chr1.2:59880505-59880524 | None:intergenic | 35.0% | |
| CTTTCCTCTAACATAAGGTT+TGG | + | chr1.2:59880500-59880519 | None:intergenic | 35.0% | |
| GAATGAAAAAGGTTACTCTG+AGG | - | chr1.2:59880358-59880377 | MS.gene40831:intron | 35.0% | |
| TCAATGCTGTTATACTCAAG+AGG | - | chr1.2:59879411-59879430 | MS.gene40831:intron | 35.0% | |
| TGAAATTTACCTATGCAGGA+AGG | - | chr1.2:59879584-59879603 | MS.gene40831:CDS | 35.0% | |
| TGGTTATATTTCATTGCGGA+TGG | - | chr1.2:59878896-59878915 | MS.gene40831:intron | 35.0% | |
| ! | AGGAAAAGCCAACTCATTTT+AGG | + | chr1.2:59879004-59879023 | None:intergenic | 35.0% |
| ! | AGGTTGATCAAGTATACCAA+TGG | - | chr1.2:59879476-59879495 | MS.gene40831:intron | 35.0% |
| ! | ATTTCACATTTTCCCTCTAG+CGG | - | chr1.2:59880303-59880322 | MS.gene40831:intron | 35.0% |
| ! | GCTGTCATTTATTGGATTGA+TGG | - | chr1.2:59880214-59880233 | MS.gene40831:intron | 35.0% |
| ! | GGAAAAGCCAACTCATTTTA+GGG | + | chr1.2:59879003-59879022 | None:intergenic | 35.0% |
| ! | GGGTCGAAAAAACCTATTTT+TGG | - | chr1.2:59878876-59878895 | MS.gene40831:intron | 35.0% |
| ! | GTGCTATTGCTGTCATTTAA+TGG | - | chr1.2:59879964-59879983 | MS.gene40831:intron | 35.0% |
| !! | TTTGTAGGGTATCGATCTTA+AGG | - | chr1.2:59878501-59878520 | MS.gene40831:CDS | 35.0% |
| AACCTCCACTATCTTTGTCA+AGG | - | chr1.2:59879456-59879475 | MS.gene40831:intron | 40.0% | |
| AGATTGACAAACCTTGCCAT+TGG | + | chr1.2:59879495-59879514 | None:intergenic | 40.0% | |
| ATAGTTACACAAACCGCTAG+AGG | + | chr1.2:59880319-59880338 | None:intergenic | 40.0% | |
| CAAGAGGTTGTTTATGAGCA+AGG | - | chr1.2:59879427-59879446 | MS.gene40831:intron | 40.0% | |
| CACACCAAACCTTATGTTAG+AGG | - | chr1.2:59880493-59880512 | MS.gene40831:intron | 40.0% | |
| GATCAAGTATACCAATGGCA+AGG | - | chr1.2:59879481-59879500 | MS.gene40831:intron | 40.0% | |
| TAATGAAGTTCCAGCCATCA+AGG | - | chr1.2:59879652-59879671 | MS.gene40831:intron | 40.0% | |
| TAGTTACACAAACCGCTAGA+GGG | + | chr1.2:59880318-59880337 | None:intergenic | 40.0% | |
| TGGCTGGAACTTCATTAACA+CGG | + | chr1.2:59879649-59879668 | None:intergenic | 40.0% | |
| TTCTCTCTAGTCTCCAACAA+AGG | - | chr1.2:59879931-59879950 | MS.gene40831:intron | 40.0% | |
| ! | AACCTTGACAAAGATAGTGG+AGG | + | chr1.2:59879461-59879480 | None:intergenic | 40.0% |
| ! | ATTCGATCAGTTGGCTCTTA+GGG | - | chr1.2:59879742-59879761 | MS.gene40831:intron | 40.0% |
| ! | CTATCTCAAGCTTTTGGTCA+AGG | - | chr1.2:59878576-59878595 | MS.gene40831:intron | 40.0% |
| ! | GCAATTTTACCTTCCTGCAT+AGG | + | chr1.2:59879596-59879615 | None:intergenic | 40.0% |
| ! | GTGCTGTTGCTGTCATTTAT+TGG | - | chr1.2:59880206-59880225 | MS.gene40831:intron | 40.0% |
| !! | AGCTTTATCGGTTCCTTGTT+CGG | - | chr1.2:59879372-59879391 | MS.gene40831:intron | 40.0% |
| !! | AGGTTACTCTGAGGTTATAG+AGG | - | chr1.2:59880367-59880386 | MS.gene40831:intron | 40.0% |
| !! | CTCTAACATAAGGTTTGGTG+TGG | + | chr1.2:59880495-59880514 | None:intergenic | 40.0% |
| ACTGCTTCACGAGCATTCTT+TGG | + | chr1.2:59880436-59880455 | None:intergenic | 45.0% | |
| AGGAAGATTGAGAAGGCTAG+AGG | - | chr1.2:59880523-59880542 | MS.gene40831:intron | 45.0% | |
| AGGCAAGGGCAAGAATAGAA+AGG | - | chr1.2:59879699-59879718 | MS.gene40831:intron | 45.0% | |
| AGGTAAAATTGCTGTCGTGG+TGG | - | chr1.2:59879604-59879623 | MS.gene40831:intron | 45.0% | |
| CGTGAAGCAGTTAAGCACTT+TGG | - | chr1.2:59880445-59880464 | MS.gene40831:CDS | 45.0% | |
| CTGCTTCACGAGCATTCTTT+GGG | + | chr1.2:59880435-59880454 | None:intergenic | 45.0% | |
| GGAAGGTAAAATTGCTGTCG+TGG | - | chr1.2:59879601-59879620 | MS.gene40831:intron | 45.0% | |
| GGCAAGGGCAAGAATAGAAA+GGG | - | chr1.2:59879700-59879719 | MS.gene40831:intron | 45.0% | |
| GGTAAAATTGCTGTCGTGGT+GGG | - | chr1.2:59879605-59879624 | MS.gene40831:intron | 45.0% | |
| GTAAAATTGCTGTCGTGGTG+GGG | - | chr1.2:59879606-59879625 | MS.gene40831:intron | 45.0% | |
| TAAAATTGCTGTCGTGGTGG+GGG | - | chr1.2:59879607-59879626 | MS.gene40831:intron | 45.0% | |
| TATTCTTGCCCTTGCCTTCT+CGG | + | chr1.2:59879696-59879715 | None:intergenic | 45.0% | |
| TTGAGAAGGCTAGAGGAAAG+AGG | - | chr1.2:59880530-59880549 | MS.gene40831:intron | 45.0% | |
| ! | ATACCGTGTTTTGTCCCAGA+GGG | + | chr1.2:59879769-59879788 | None:intergenic | 45.0% |
| ! | CATTCGATCAGTTGGCTCTT+AGG | - | chr1.2:59879741-59879760 | MS.gene40831:intron | 45.0% |
| ! | CATTCTTTGGGCCTCTAAGA+AGG | + | chr1.2:59880423-59880442 | None:intergenic | 45.0% |
| !! | AAGGTTTGGTGTGGCTTTGT+GGG | + | chr1.2:59880486-59880505 | None:intergenic | 45.0% |
| !! | TAAGGTTTGGTGTGGCTTTG+TGG | + | chr1.2:59880487-59880506 | None:intergenic | 45.0% |
| !! | TAGGGTATCGATCTTAAGGC+AGG | - | chr1.2:59878505-59878524 | MS.gene40831:CDS | 45.0% |
| AGAGGAAAGAGGAAGAGCAG+AGG | - | chr1.2:59880541-59880560 | MS.gene40831:intron | 50.0% | |
| AGCACTCAGGTTTACCGAGA+AGG | - | chr1.2:59879679-59879698 | MS.gene40831:intron | 50.0% | |
| AGGGCAAGAATAGAAAGGGC+TGG | - | chr1.2:59879704-59879723 | MS.gene40831:intron | 50.0% | |
| CAGGTTTACCGAGAAGGCAA+GGG | - | chr1.2:59879685-59879704 | MS.gene40831:intron | 50.0% | |
| CCATCAAGGTTACAGCACTC+AGG | - | chr1.2:59879666-59879685 | MS.gene40831:intron | 50.0% | |
| GCAAGAATAGAAAGGGCTGG+TGG | - | chr1.2:59879707-59879726 | MS.gene40831:intron | 50.0% | |
| TCAGGTTTACCGAGAAGGCA+AGG | - | chr1.2:59879684-59879703 | MS.gene40831:intron | 50.0% | |
| TGGATGCAGGTCCTTCTTAG+AGG | - | chr1.2:59880409-59880428 | MS.gene40831:CDS | 50.0% | |
| ! | AGTGCTGTAACCTTGATGGC+TGG | + | chr1.2:59879665-59879684 | None:intergenic | 50.0% |
| ! | CATACCGTGTTTTGTCCCAG+AGG | + | chr1.2:59879770-59879789 | None:intergenic | 50.0% |
| ! | CCTGAGTGCTGTAACCTTGA+TGG | + | chr1.2:59879669-59879688 | None:intergenic | 50.0% |
| ! | TACCGTGTTTTGTCCCAGAG+GGG | + | chr1.2:59879768-59879787 | None:intergenic | 50.0% |
| !! | GGTATCGATCTTAAGGCAGG+AGG | - | chr1.2:59878508-59878527 | MS.gene40831:CDS | 50.0% |
| AAGCACTTTGGTCGTGCTCC+TGG | - | chr1.2:59880457-59880476 | MS.gene40831:CDS | 55.0% | |
| CGGTTCCTTGTTCGGAGAAC+TGG | - | chr1.2:59879380-59879399 | MS.gene40831:intron | 55.0% | |
| TGCTGCCAGTTCTCCGAACA+AGG | + | chr1.2:59879388-59879407 | None:intergenic | 55.0% | |
| ! | TTGGCTCTTAGGGCCCCTCT+GGG | - | chr1.2:59879752-59879771 | MS.gene40831:intron | 60.0% |
| !! | GGCCCCTCTGGGACAAAACA+CGG | - | chr1.2:59879763-59879782 | MS.gene40831:intron | 60.0% |
| !! | GTGTGGCTTTGTGGGACACC+AGG | + | chr1.2:59880478-59880497 | None:intergenic | 60.0% |
| ! | GTTGGCTCTTAGGGCCCCTC+TGG | - | chr1.2:59879751-59879770 | MS.gene40831:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 59878414 | 59880576 | 59878414 | ID=MS.gene40831 |
| chr1.2 | mRNA | 59878414 | 59880576 | 59878414 | ID=MS.gene40831.t1;Parent=MS.gene40831 |
| chr1.2 | exon | 59880574 | 59880576 | 59880574 | ID=MS.gene40831.t1.exon1;Parent=MS.gene40831.t1 |
| chr1.2 | CDS | 59880574 | 59880576 | 59880574 | ID=cds.MS.gene40831.t1;Parent=MS.gene40831.t1 |
| chr1.2 | exon | 59880393 | 59880482 | 59880393 | ID=MS.gene40831.t1.exon2;Parent=MS.gene40831.t1 |
| chr1.2 | CDS | 59880393 | 59880482 | 59880393 | ID=cds.MS.gene40831.t1;Parent=MS.gene40831.t1 |
| chr1.2 | exon | 59879488 | 59879616 | 59879488 | ID=MS.gene40831.t1.exon3;Parent=MS.gene40831.t1 |
| chr1.2 | CDS | 59879488 | 59879616 | 59879488 | ID=cds.MS.gene40831.t1;Parent=MS.gene40831.t1 |
| chr1.2 | exon | 59879206 | 59879388 | 59879206 | ID=MS.gene40831.t1.exon4;Parent=MS.gene40831.t1 |
| chr1.2 | CDS | 59879206 | 59879388 | 59879206 | ID=cds.MS.gene40831.t1;Parent=MS.gene40831.t1 |
| chr1.2 | exon | 59878414 | 59878572 | 59878414 | ID=MS.gene40831.t1.exon5;Parent=MS.gene40831.t1 |
| chr1.2 | CDS | 59878414 | 59878572 | 59878414 | ID=cds.MS.gene40831.t1;Parent=MS.gene40831.t1 |
| Gene Sequence |
| Protein sequence |
