Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06999.t1 | XP_013450365.1 | 100 | 188 | 0 | 0 | 1 | 188 | 1 | 188 | 7.90E-96 | 359.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06999.t1 | Q940B0 | 84.6 | 188 | 28 | 1 | 1 | 188 | 1 | 187 | 1.9e-82 | 306.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06999.t1 | A0A072U5K2 | 100.0 | 188 | 0 | 0 | 1 | 188 | 1 | 188 | 5.7e-96 | 359.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene06999 | 0.900781 | 5.19E-78 | -1.69E-46 |
| MS.gene049376 | MS.gene06999 | 0.826797 | 2.23E-54 | -1.69E-46 |
| MS.gene049387 | MS.gene06999 | 0.830762 | 2.45E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene06999 | 0.840902 | 6.57E-58 | -1.69E-46 |
| MS.gene051925 | MS.gene06999 | 0.905696 | 3.27E-80 | -1.69E-46 |
| MS.gene051927 | MS.gene06999 | 0.873675 | 1.22E-67 | -1.69E-46 |
| MS.gene052664 | MS.gene06999 | 0.819034 | 1.44E-52 | -1.69E-46 |
| MS.gene052666 | MS.gene06999 | 0.92854 | 2.50E-92 | -1.69E-46 |
| MS.gene057272 | MS.gene06999 | 0.819619 | 1.06E-52 | -1.69E-46 |
| MS.gene057321 | MS.gene06999 | 0.847889 | 8.69E-60 | -1.69E-46 |
| MS.gene057643 | MS.gene06999 | 0.839754 | 1.31E-57 | -1.69E-46 |
| MS.gene059340 | MS.gene06999 | 0.819095 | 1.39E-52 | -1.69E-46 |
| MS.gene060483 | MS.gene06999 | 0.840431 | 8.73E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06999 | MS.gene26792 | PPI |
| MS.gene06999 | MS.gene23126 | PPI |
| MS.gene40831 | MS.gene06999 | PPI |
| MS.gene025709 | MS.gene06999 | PPI |
| MS.gene22957 | MS.gene06999 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06999.t1 | MTR_7g108805 | 100.000 | 188 | 0 | 0 | 1 | 188 | 1 | 188 | 2.08e-134 | 374 |
| MS.gene06999.t1 | MTR_1g083460 | 91.489 | 188 | 15 | 1 | 1 | 188 | 1 | 187 | 1.02e-121 | 342 |
| MS.gene06999.t1 | MTR_7g112880 | 86.702 | 188 | 24 | 1 | 1 | 188 | 1 | 187 | 8.53e-117 | 329 |
| MS.gene06999.t1 | MTR_7g112880 | 84.444 | 135 | 20 | 1 | 54 | 188 | 1 | 134 | 1.17e-79 | 233 |
| MS.gene06999.t1 | MTR_4g005170 | 83.929 | 56 | 8 | 1 | 133 | 188 | 582 | 636 | 8.87e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06999.t1 | AT5G27850 | 84.574 | 188 | 28 | 1 | 1 | 188 | 1 | 187 | 2.25e-113 | 320 |
| MS.gene06999.t1 | AT3G05590 | 83.511 | 188 | 30 | 1 | 1 | 188 | 1 | 187 | 3.60e-111 | 315 |
| MS.gene06999.t1 | AT2G47570 | 77.540 | 187 | 40 | 2 | 3 | 188 | 1 | 186 | 9.40e-101 | 288 |
| MS.gene06999.t1 | AT5G27850 | 82.963 | 135 | 22 | 1 | 54 | 188 | 1 | 134 | 1.19e-77 | 228 |
| MS.gene06999.t1 | AT3G05590 | 82.222 | 135 | 23 | 1 | 54 | 188 | 1 | 134 | 4.63e-77 | 227 |
| MS.gene06999.t1 | AT3G05590 | 82.222 | 135 | 23 | 1 | 54 | 188 | 1 | 134 | 4.63e-77 | 227 |
Find 54 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGGTACGTTTAGTCTTCT+TGG | 0.192478 | 7.2:-5215031 | None:intergenic |
| TTATGAAGTACCTGCAATTA+AGG | 0.289178 | 7.2:+5215834 | MS.gene06999:CDS |
| CTGGCTCTTAGAGCTCCTTT+AGG | 0.297513 | 7.2:+5215934 | MS.gene06999:CDS |
| AGGTAGATATCATTGGATTT+TGG | 0.303386 | 7.2:-5215054 | None:intergenic |
| AGCCACCACTATCACTTTCT+AGG | 0.308293 | 7.2:+5215274 | MS.gene06999:CDS |
| TGGCTCTTAGAGCTCCTTTA+GGG | 0.321716 | 7.2:+5215935 | MS.gene06999:CDS |
| GTGCCGTGACAGATGACATT+AGG | 0.331949 | 7.2:+5215809 | MS.gene06999:CDS |
| ATGTTTCAGGTTCTTCTTAG+AGG | 0.334993 | 7.2:+5216581 | MS.gene06999:intron |
| GACTGAAAGTAATTTCAATA+AGG | 0.349360 | 7.2:+5215215 | MS.gene06999:CDS |
| AGAGCAGTTACCTTAATTGC+AGG | 0.362185 | 7.2:-5215844 | None:intergenic |
| TCAATAAGGTTATCCTTAAG+AGG | 0.371127 | 7.2:+5215229 | MS.gene06999:CDS |
| TGCTCATGAAAAGCCTCTTA+AGG | 0.380870 | 7.2:-5215242 | None:intergenic |
| TTGAAGCCGCTAGAGGAAAA+AGG | 0.383923 | 7.2:+5216705 | MS.gene06999:CDS |
| CTACCTCAAGCTTCTCGTTA+AGG | 0.389550 | 7.2:+5215071 | MS.gene06999:CDS |
| TGCCGTGACAGATGACATTA+GGG | 0.403697 | 7.2:+5215810 | MS.gene06999:CDS |
| CAATTAAGGTAACTGCTCTA+AGG | 0.406837 | 7.2:+5215848 | MS.gene06999:CDS |
| AAGCTTGAGGTAGATATCAT+TGG | 0.411467 | 7.2:-5215061 | None:intergenic |
| GTGCCTCACCTTTGATCAGC+TGG | 0.415929 | 7.2:+5215915 | MS.gene06999:CDS |
| TGCTCTAAGGTTCACCGAAA+AGG | 0.469427 | 7.2:+5215861 | MS.gene06999:CDS |
| TTCGCAGGGTATCGATTTGA+AGG | 0.470824 | 7.2:+5214996 | MS.gene06999:intron |
| GGTAAGATTGCTGTAGTTGT+TGG | 0.475236 | 7.2:+5215787 | MS.gene06999:CDS |
| AAGCACTTTGGACGAGCTCC+TGG | 0.482073 | 7.2:+5216629 | MS.gene06999:CDS |
| CGTGAGGCTGTCAAGCACTT+TGG | 0.482505 | 7.2:+5216617 | MS.gene06999:CDS |
| CAGGGTATCGATTTGAAGGC+AGG | 0.483139 | 7.2:+5215000 | MS.gene06999:intron |
| TAAGGTTCACCGAAAAGGCC+AGG | 0.486544 | 7.2:+5215866 | MS.gene06999:CDS |
| CATACCGTGTTCTGCCCTAA+AGG | 0.491830 | 7.2:-5215949 | None:intergenic |
| AGCCTTCTCAATTCTAGCCC+TGG | 0.500353 | 7.2:-5215884 | None:intergenic |
| GCGATTATATACCTTTCCCT+TGG | 0.506650 | 7.2:-5215310 | None:intergenic |
| GTGTTGCTGTGTGGCACACC+AGG | 0.524962 | 7.2:-5216647 | None:intergenic |
| CAGTCCTTCGAACAAGGAAA+CGG | 0.531384 | 7.2:-5215197 | None:intergenic |
| TACTTTCAGTCCTTCGAACA+AGG | 0.547564 | 7.2:-5215203 | None:intergenic |
| ATCAACCTAGAAAGTGATAG+TGG | 0.548653 | 7.2:-5215279 | None:intergenic |
| CTAGAATTGAGAAGGCTGGT+GGG | 0.553032 | 7.2:+5215890 | MS.gene06999:CDS |
| AGGTTGATTCGTTACACCAA+GGG | 0.558600 | 7.2:+5215294 | MS.gene06999:CDS |
| AAAGTGCTTGACAGCCTCAC+GGG | 0.558822 | 7.2:-5216615 | None:intergenic |
| GATTCGTTACACCAAGGGAA+AGG | 0.565427 | 7.2:+5215299 | MS.gene06999:CDS |
| TATACCGTTTCCTTGTTCGA+AGG | 0.566828 | 7.2:+5215193 | MS.gene06999:CDS |
| AGGGCTAGAATTGAGAAGGC+TGG | 0.575107 | 7.2:+5215886 | MS.gene06999:CDS |
| CAAAGTGCTTGACAGCCTCA+CGG | 0.580659 | 7.2:-5216616 | None:intergenic |
| CGAAAGGTTGAAGCCGCTAG+AGG | 0.583684 | 7.2:+5216698 | MS.gene06999:CDS |
| GCTAGAATTGAGAAGGCTGG+TGG | 0.586828 | 7.2:+5215889 | MS.gene06999:CDS |
| TCTAAGAGCCAGCTGATCAA+AGG | 0.589919 | 7.2:-5215923 | None:intergenic |
| TAGAATTGAGAAGGCTGGTG+GGG | 0.601753 | 7.2:+5215891 | MS.gene06999:CDS |
| AACCCTAATGTCATCTGTCA+CGG | 0.612086 | 7.2:-5215812 | None:intergenic |
| GGCCAGGGCTAGAATTGAGA+AGG | 0.617622 | 7.2:+5215882 | MS.gene06999:CDS |
| AGCTCCTTTAGGGCAGAACA+CGG | 0.621376 | 7.2:+5215945 | MS.gene06999:CDS |
| AACACTAAGCCCTATGTCCG+TGG | 0.624133 | 7.2:+5216665 | MS.gene06999:CDS |
| AAGGTTCACCGAAAAGGCCA+GGG | 0.631182 | 7.2:+5215867 | MS.gene06999:CDS |
| ATACCTTAACGAGAAGCTTG+AGG | 0.644428 | 7.2:-5215074 | None:intergenic |
| TAGGTTGATTCGTTACACCA+AGG | 0.646840 | 7.2:+5215293 | MS.gene06999:CDS |
| AACCTAGAAAGTGATAGTGG+TGG | 0.668105 | 7.2:-5215276 | None:intergenic |
| GAGCCAGCTGATCAAAGGTG+AGG | 0.684975 | 7.2:-5215918 | None:intergenic |
| GGTATCGATTTGAAGGCAGG+AGG | 0.701621 | 7.2:+5215003 | MS.gene06999:CDS |
| TAGGGCTTAGTGTTGCTGTG+TGG | 0.709531 | 7.2:-5216656 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTTGTATTTATAACAA+AGG | + | chr7.2:5215366-5215385 | MS.gene06999:intron | 15.0% |
| !!! | TGGTAAACATATTATTTTAT+AGG | - | chr7.2:5216321-5216340 | None:intergenic | 15.0% |
| !!! | TGTTATAAACTTTTAATCTT+CGG | - | chr7.2:5216066-5216085 | None:intergenic | 15.0% |
| !!! | TTTACTTTGTTTTGAAATAT+TGG | + | chr7.2:5216233-5216252 | MS.gene06999:intron | 15.0% |
| !! | AACTAAAGCAAAATAAAAAC+AGG | - | chr7.2:5216360-5216379 | None:intergenic | 20.0% |
| !! | TCCTAAAGTTGTAATAAAAA+AGG | - | chr7.2:5216474-5216493 | None:intergenic | 20.0% |
| !!! | TATTATTTTATAGGCTGTAT+TGG | - | chr7.2:5216312-5216331 | None:intergenic | 20.0% |
| !!! | TTTTCTTGTATTAATGTTTC+AGG | + | chr7.2:5216568-5216587 | MS.gene06999:intron | 20.0% |
| ! | AAAAAAAAAGCCTATGACAT+GGG | - | chr7.2:5215618-5215637 | None:intergenic | 25.0% |
| ! | ACAAAGTAAAACAAAAACAC+AGG | - | chr7.2:5216223-5216242 | None:intergenic | 25.0% |
| ! | ATAAAAAAGGCAGCAAAAAT+AGG | - | chr7.2:5216461-5216480 | None:intergenic | 25.0% |
| ! | GAATAGAATGATAAATGAAG+AGG | + | chr7.2:5216194-5216213 | MS.gene06999:intron | 25.0% |
| ! | GACTGAAAGTAATTTCAATA+AGG | + | chr7.2:5215215-5215234 | MS.gene06999:CDS | 25.0% |
| ! | GTTATTGTGAATCTGAATAA+TGG | + | chr7.2:5215120-5215139 | MS.gene06999:intron | 25.0% |
| ! | TAAAAAAAAAGCCTATGACA+TGG | - | chr7.2:5215619-5215638 | None:intergenic | 25.0% |
| !! | CAGAAAGTATAACAGTTATA+AGG | - | chr7.2:5216287-5216306 | None:intergenic | 25.0% |
| !! | TTATTACAACTTTAGGAGAA+AGG | + | chr7.2:5216477-5216496 | MS.gene06999:intron | 25.0% |
| !!! | GCCTTTTTTATTACAACTTT+AGG | + | chr7.2:5216470-5216489 | MS.gene06999:intron | 25.0% |
| !!! | TTGCTGTAATTTTAGAAGTT+TGG | + | chr7.2:5216031-5216050 | MS.gene06999:intron | 25.0% |
| !!! | TTTTTTCTTTCTCTGGTATT+AGG | + | chr7.2:5215762-5215781 | MS.gene06999:intron | 25.0% |
| AAAACATGACTTCATACAAG+TGG | - | chr7.2:5216136-5216155 | None:intergenic | 30.0% | |
| ATTAAGACAACATACATCTG+AGG | + | chr7.2:5216536-5216555 | MS.gene06999:intron | 30.0% | |
| CAAGAGTAGAAAATGAATGA+AGG | - | chr7.2:5215101-5215120 | None:intergenic | 30.0% | |
| CAATTGCATGAAGTTTAGTT+TGG | - | chr7.2:5216099-5216118 | None:intergenic | 30.0% | |
| TCAAATAAGCGAATCAAAAC+AGG | + | chr7.2:5215592-5215611 | MS.gene06999:intron | 30.0% | |
| TCAATAAGGTTATCCTTAAG+AGG | + | chr7.2:5215229-5215248 | MS.gene06999:CDS | 30.0% | |
| ! | AGGTAGATATCATTGGATTT+TGG | - | chr7.2:5215057-5215076 | None:intergenic | 30.0% |
| ! | TGCATGTATGCTTTTAGATA+CGG | + | chr7.2:5215670-5215689 | MS.gene06999:intron | 30.0% |
| ! | TTATGAAGTACCTGCAATTA+AGG | + | chr7.2:5215834-5215853 | MS.gene06999:CDS | 30.0% |
| !! | GCTTTTAGATACGGTTTTAT+TGG | + | chr7.2:5215679-5215698 | MS.gene06999:intron | 30.0% |
| !! | TTGTCTTAATTTGCAAAGAG+TGG | - | chr7.2:5216526-5216545 | None:intergenic | 30.0% |
| !!! | GTTCACTTTTTTTCTTTCTC+TGG | + | chr7.2:5215755-5215774 | MS.gene06999:intron | 30.0% |
| AAGCTTGAGGTAGATATCAT+TGG | - | chr7.2:5215064-5215083 | None:intergenic | 35.0% | |
| ATCAACCTAGAAAGTGATAG+TGG | - | chr7.2:5215282-5215301 | None:intergenic | 35.0% | |
| CAATTAAGGTAACTGCTCTA+AGG | + | chr7.2:5215848-5215867 | MS.gene06999:CDS | 35.0% | |
| GAGTTAGTTAGAAGAAATGG+TGG | - | chr7.2:5214942-5214961 | None:intergenic | 35.0% | |
| TCGGAGTTAGTTAGAAGAAA+TGG | - | chr7.2:5214945-5214964 | None:intergenic | 35.0% | |
| TTCTTTCTCTGGTATTAGGA+GGG | + | chr7.2:5215766-5215785 | MS.gene06999:intron | 35.0% | |
| TTTCTTTCTCTGGTATTAGG+AGG | + | chr7.2:5215765-5215784 | MS.gene06999:intron | 35.0% | |
| ! | GCGGCAAATTAGATCAATTT+TGG | + | chr7.2:5216416-5216435 | MS.gene06999:intron | 35.0% |
| ! | TGTTTTTCCAAACACTCGTA+CGG | + | chr7.2:5215548-5215567 | MS.gene06999:intron | 35.0% |
| ! | TTGGATAATGCTGTTACTTG+CGG | + | chr7.2:5216252-5216271 | MS.gene06999:intron | 35.0% |
| !! | ATGTTTCAGGTTCTTCTTAG+AGG | + | chr7.2:5216581-5216600 | MS.gene06999:intron | 35.0% |
| !! | GATATCATTGGATTTTGGTG+CGG | - | chr7.2:5215052-5215071 | None:intergenic | 35.0% |
| !! | GGTTGATGAAGAGATAACAT+TGG | + | chr7.2:5215700-5215719 | MS.gene06999:intron | 35.0% |
| !!! | CCTTTCGTGATTTTTTTCCA+CGG | - | chr7.2:5216685-5216704 | None:intergenic | 35.0% |
| !!! | GATTTTTTTCCACGGACATA+GGG | - | chr7.2:5216677-5216696 | None:intergenic | 35.0% |
| !!! | TGATTTTTTTCCACGGACAT+AGG | - | chr7.2:5216678-5216697 | None:intergenic | 35.0% |
| AACCCTAATGTCATCTGTCA+CGG | - | chr7.2:5215815-5215834 | None:intergenic | 40.0% | |
| ACTTCTATACCTATCTGCTG+CGG | + | chr7.2:5216397-5216416 | MS.gene06999:intron | 40.0% | |
| AGAGCAGTTACCTTAATTGC+AGG | - | chr7.2:5215847-5215866 | None:intergenic | 40.0% | |
| ATACCTTAACGAGAAGCTTG+AGG | - | chr7.2:5215077-5215096 | None:intergenic | 40.0% | |
| CCGTGGAAAAAAATCACGAA+AGG | + | chr7.2:5216682-5216701 | MS.gene06999:CDS | 40.0% | |
| GCGATTATATACCTTTCCCT+TGG | - | chr7.2:5215313-5215332 | None:intergenic | 40.0% | |
| GGTAAGATTGCTGTAGTTGT+TGG | + | chr7.2:5215787-5215806 | MS.gene06999:CDS | 40.0% | |
| TACTTTCAGTCCTTCGAACA+AGG | - | chr7.2:5215206-5215225 | None:intergenic | 40.0% | |
| TATACCGTTTCCTTGTTCGA+AGG | + | chr7.2:5215193-5215212 | MS.gene06999:CDS | 40.0% | |
| TGCTCATGAAAAGCCTCTTA+AGG | - | chr7.2:5215245-5215264 | None:intergenic | 40.0% | |
| ! | ATAAGTACCGTACGAGTGTT+TGG | - | chr7.2:5215558-5215577 | None:intergenic | 40.0% |
| ! | CAGGAAGTACACTAGATTTG+TGG | - | chr7.2:5216341-5216360 | None:intergenic | 40.0% |
| !! | AACCTAGAAAGTGATAGTGG+TGG | - | chr7.2:5215279-5215298 | None:intergenic | 40.0% |
| !! | AGGTTGATTCGTTACACCAA+GGG | + | chr7.2:5215294-5215313 | MS.gene06999:CDS | 40.0% |
| !! | TAGGTTGATTCGTTACACCA+AGG | + | chr7.2:5215293-5215312 | MS.gene06999:CDS | 40.0% |
| AGAAAGAGGAGTGAGATGAG+AGG | - | chr7.2:5214971-5214990 | None:intergenic | 45.0% | |
| AGAGGAAAAAGGAAGAGCAG+AGG | + | chr7.2:5216716-5216735 | MS.gene06999:CDS | 45.0% | |
| AGCCACCACTATCACTTTCT+AGG | + | chr7.2:5215274-5215293 | MS.gene06999:CDS | 45.0% | |
| CAGTCCTTCGAACAAGGAAA+CGG | - | chr7.2:5215200-5215219 | None:intergenic | 45.0% | |
| CTACCTCAAGCTTCTCGTTA+AGG | + | chr7.2:5215071-5215090 | MS.gene06999:CDS | 45.0% | |
| CTAGAATTGAGAAGGCTGGT+GGG | + | chr7.2:5215890-5215909 | MS.gene06999:CDS | 45.0% | |
| GATTCGTTACACCAAGGGAA+AGG | + | chr7.2:5215299-5215318 | MS.gene06999:CDS | 45.0% | |
| GGAGTGAGATGAGAGGTTAT+CGG | - | chr7.2:5214964-5214983 | None:intergenic | 45.0% | |
| TAGAATTGAGAAGGCTGGTG+GGG | + | chr7.2:5215891-5215910 | MS.gene06999:CDS | 45.0% | |
| TCAAAACAGGCCCATGTCAT+AGG | + | chr7.2:5215605-5215624 | MS.gene06999:intron | 45.0% | |
| TCTAAGAGCCAGCTGATCAA+AGG | - | chr7.2:5215926-5215945 | None:intergenic | 45.0% | |
| TGCCGTGACAGATGACATTA+GGG | + | chr7.2:5215810-5215829 | MS.gene06999:CDS | 45.0% | |
| TGGCTCTTAGAGCTCCTTTA+GGG | + | chr7.2:5215935-5215954 | MS.gene06999:CDS | 45.0% | |
| TTGAAGCCGCTAGAGGAAAA+AGG | + | chr7.2:5216705-5216724 | MS.gene06999:CDS | 45.0% | |
| ! | CCTCTTTCTCTCTTTTCGCA+GGG | + | chr7.2:5214982-5215001 | MS.gene06999:intron | 45.0% |
| ! | GCTCTTCCTTTTTCCTCTAG+CGG | - | chr7.2:5216714-5216733 | None:intergenic | 45.0% |
| ! | TCCTCTTTCTCTCTTTTCGC+AGG | + | chr7.2:5214981-5215000 | MS.gene06999:intron | 45.0% |
| ! | TCTAATTTGCCGCAGCAGAT+AGG | - | chr7.2:5216409-5216428 | None:intergenic | 45.0% |
| ! | TGCGGTACGTTTAGTCTTCT+TGG | - | chr7.2:5215034-5215053 | None:intergenic | 45.0% |
| !! | AATTCTAGCCCTGGCCTTTT+CGG | - | chr7.2:5215878-5215897 | None:intergenic | 45.0% |
| !! | TGCTCTAAGGTTCACCGAAA+AGG | + | chr7.2:5215861-5215880 | MS.gene06999:CDS | 45.0% |
| !! | TTCGCAGGGTATCGATTTGA+AGG | + | chr7.2:5214996-5215015 | MS.gene06999:intron | 45.0% |
| AACACTAAGCCCTATGTCCG+TGG | + | chr7.2:5216665-5216684 | MS.gene06999:CDS | 50.0% | |
| AAGGTTCACCGAAAAGGCCA+GGG | + | chr7.2:5215867-5215886 | MS.gene06999:CDS | 50.0% | |
| AGCCTTCTCAATTCTAGCCC+TGG | - | chr7.2:5215887-5215906 | None:intergenic | 50.0% | |
| AGGGCTAGAATTGAGAAGGC+TGG | + | chr7.2:5215886-5215905 | MS.gene06999:CDS | 50.0% | |
| CATACCGTGTTCTGCCCTAA+AGG | - | chr7.2:5215952-5215971 | None:intergenic | 50.0% | |
| CCCTGCGAAAAGAGAGAAAG+AGG | - | chr7.2:5214985-5215004 | None:intergenic | 50.0% | |
| GCTAGAATTGAGAAGGCTGG+TGG | + | chr7.2:5215889-5215908 | MS.gene06999:CDS | 50.0% | |
| GTGCCGTGACAGATGACATT+AGG | + | chr7.2:5215809-5215828 | MS.gene06999:CDS | 50.0% | |
| TAAGGTTCACCGAAAAGGCC+AGG | + | chr7.2:5215866-5215885 | MS.gene06999:CDS | 50.0% | |
| TCCTCCTCTACAATCCCCAT+CGG | + | chr7.2:5214914-5214933 | MS.gene06999:intron | 50.0% | |
| ! | AAAGTGCTTGACAGCCTCAC+GGG | - | chr7.2:5216618-5216637 | None:intergenic | 50.0% |
| ! | ACAGCCTCACGGGCATTTTT+GGG | - | chr7.2:5216608-5216627 | None:intergenic | 50.0% |
| ! | CAAAGTGCTTGACAGCCTCA+CGG | - | chr7.2:5216619-5216638 | None:intergenic | 50.0% |
| ! | CTGGCTCTTAGAGCTCCTTT+AGG | + | chr7.2:5215934-5215953 | MS.gene06999:CDS | 50.0% |
| ! | TAGGGCTTAGTGTTGCTGTG+TGG | - | chr7.2:5216659-5216678 | None:intergenic | 50.0% |
| !! | AGCTCCTTTAGGGCAGAACA+CGG | + | chr7.2:5215945-5215964 | MS.gene06999:CDS | 50.0% |
| !! | CAGGGTATCGATTTGAAGGC+AGG | + | chr7.2:5215000-5215019 | MS.gene06999:intron | 50.0% |
| !! | GGTATCGATTTGAAGGCAGG+AGG | + | chr7.2:5215003-5215022 | MS.gene06999:CDS | 50.0% |
| AAGCACTTTGGACGAGCTCC+TGG | + | chr7.2:5216629-5216648 | MS.gene06999:CDS | 55.0% | |
| AGGTCCCAAAAATGCCCGTG+AGG | + | chr7.2:5216601-5216620 | MS.gene06999:CDS | 55.0% | |
| CGAAAGGTTGAAGCCGCTAG+AGG | + | chr7.2:5216698-5216717 | MS.gene06999:CDS | 55.0% | |
| CGTGAGGCTGTCAAGCACTT+TGG | + | chr7.2:5216617-5216636 | MS.gene06999:CDS | 55.0% | |
| GAGCCAGCTGATCAAAGGTG+AGG | - | chr7.2:5215921-5215940 | None:intergenic | 55.0% | |
| GGCCAGGGCTAGAATTGAGA+AGG | + | chr7.2:5215882-5215901 | MS.gene06999:CDS | 55.0% | |
| GTGCCTCACCTTTGATCAGC+TGG | + | chr7.2:5215915-5215934 | MS.gene06999:CDS | 55.0% | |
| ! | AGAAGAAATGGTGGCGCCGA+TGG | - | chr7.2:5214933-5214952 | None:intergenic | 55.0% |
| ! | GACAGCCTCACGGGCATTTT+TGG | - | chr7.2:5216609-5216628 | None:intergenic | 55.0% |
| !! | AAGAAATGGTGGCGCCGATG+GGG | - | chr7.2:5214931-5214950 | None:intergenic | 55.0% |
| !! | GAAGAAATGGTGGCGCCGAT+GGG | - | chr7.2:5214932-5214951 | None:intergenic | 55.0% |
| GCCGATGGGGATTGTAGAGG+AGG | - | chr7.2:5214918-5214937 | None:intergenic | 60.0% | |
| ! | GTGTTGCTGTGTGGCACACC+AGG | - | chr7.2:5216650-5216669 | None:intergenic | 60.0% |
| !! | GGCGCCGATGGGGATTGTAG+AGG | - | chr7.2:5214921-5214940 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 5214905 | 5216751 | 5214905 | ID=MS.gene06999 |
| chr7.2 | mRNA | 5214905 | 5216751 | 5214905 | ID=MS.gene06999.t1;Parent=MS.gene06999 |
| chr7.2 | exon | 5214905 | 5214907 | 5214905 | ID=MS.gene06999.t1.exon1;Parent=MS.gene06999.t1 |
| chr7.2 | CDS | 5214905 | 5214907 | 5214905 | ID=cds.MS.gene06999.t1;Parent=MS.gene06999.t1 |
| chr7.2 | exon | 5215003 | 5215092 | 5215003 | ID=MS.gene06999.t1.exon2;Parent=MS.gene06999.t1 |
| chr7.2 | CDS | 5215003 | 5215092 | 5215003 | ID=cds.MS.gene06999.t1;Parent=MS.gene06999.t1 |
| chr7.2 | exon | 5215192 | 5215320 | 5215192 | ID=MS.gene06999.t1.exon3;Parent=MS.gene06999.t1 |
| chr7.2 | CDS | 5215192 | 5215320 | 5215192 | ID=cds.MS.gene06999.t1;Parent=MS.gene06999.t1 |
| chr7.2 | exon | 5215784 | 5215966 | 5215784 | ID=MS.gene06999.t1.exon4;Parent=MS.gene06999.t1 |
| chr7.2 | CDS | 5215784 | 5215966 | 5215784 | ID=cds.MS.gene06999.t1;Parent=MS.gene06999.t1 |
| chr7.2 | exon | 5216590 | 5216751 | 5216590 | ID=MS.gene06999.t1.exon5;Parent=MS.gene06999.t1 |
| chr7.2 | CDS | 5216590 | 5216751 | 5216590 | ID=cds.MS.gene06999.t1;Parent=MS.gene06999.t1 |
| Gene Sequence |
| Protein sequence |
