Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025979.t1 | XP_004516473.1 | 83.5 | 412 | 66 | 1 | 4 | 415 | 4 | 413 | 1.00E-183 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025979.t1 | Q8VXY7 | 65.0 | 408 | 140 | 2 | 10 | 415 | 44 | 450 | 7.3e-143 | 508.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025979.t1 | A0A1S2Z7N2 | 83.5 | 412 | 66 | 1 | 4 | 415 | 4 | 413 | 7.2e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59641 | MS.gene025979 | PPI |
| MS.gene036758 | MS.gene025979 | PPI |
| MS.gene59944 | MS.gene025979 | PPI |
| MS.gene036759 | MS.gene025979 | PPI |
| MS.gene62397 | MS.gene025979 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025979.t1 | MTR_0003s0470 | 86.616 | 396 | 51 | 1 | 20 | 415 | 22 | 415 | 0.0 | 695 |
| MS.gene025979.t1 | MTR_3g462280 | 85.783 | 415 | 53 | 3 | 4 | 415 | 12 | 423 | 0.0 | 687 |
| MS.gene025979.t1 | MTR_4g114710 | 47.208 | 394 | 196 | 3 | 24 | 415 | 15 | 398 | 9.33e-115 | 341 |
| MS.gene025979.t1 | MTR_0008s0170 | 32.512 | 406 | 247 | 8 | 28 | 415 | 14 | 410 | 1.09e-57 | 194 |
| MS.gene025979.t1 | MTR_0008s0130 | 32.840 | 405 | 243 | 10 | 30 | 415 | 16 | 410 | 1.84e-55 | 189 |
| MS.gene025979.t1 | MTR_2g011600 | 32.203 | 413 | 237 | 11 | 30 | 415 | 23 | 419 | 2.91e-52 | 181 |
| MS.gene025979.t1 | MTR_4g050990 | 33.252 | 409 | 240 | 9 | 28 | 415 | 14 | 410 | 3.89e-51 | 177 |
| MS.gene025979.t1 | MTR_2g089520 | 33.252 | 409 | 240 | 9 | 28 | 415 | 14 | 410 | 3.89e-51 | 177 |
| MS.gene025979.t1 | MTR_2g011580 | 32.558 | 387 | 231 | 9 | 49 | 415 | 2 | 378 | 8.37e-51 | 176 |
| MS.gene025979.t1 | MTR_2g047968 | 33.092 | 414 | 241 | 11 | 24 | 415 | 11 | 410 | 5.88e-50 | 175 |
| MS.gene025979.t1 | MTR_2g011600 | 32.312 | 359 | 204 | 10 | 84 | 415 | 22 | 368 | 1.50e-44 | 159 |
| MS.gene025979.t1 | MTR_1g071120 | 30.606 | 330 | 199 | 8 | 30 | 341 | 58 | 375 | 3.80e-38 | 142 |
| MS.gene025979.t1 | MTR_8g007285 | 29.714 | 350 | 213 | 9 | 92 | 415 | 20 | 362 | 2.42e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025979.t1 | AT1G70330 | 65.865 | 416 | 139 | 2 | 2 | 415 | 36 | 450 | 0.0 | 537 |
| MS.gene025979.t1 | AT1G02630 | 47.704 | 392 | 189 | 5 | 24 | 415 | 14 | 389 | 7.47e-122 | 359 |
| MS.gene025979.t1 | AT1G02630 | 40.816 | 392 | 172 | 6 | 24 | 415 | 14 | 345 | 1.62e-91 | 280 |
| MS.gene025979.t1 | AT4G05120 | 32.203 | 413 | 238 | 11 | 28 | 415 | 17 | 412 | 1.18e-50 | 176 |
| MS.gene025979.t1 | AT4G05120 | 32.203 | 413 | 238 | 11 | 28 | 415 | 17 | 412 | 1.18e-50 | 176 |
| MS.gene025979.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 2.71e-48 | 170 |
| MS.gene025979.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 2.71e-48 | 170 |
| MS.gene025979.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 8.06e-48 | 169 |
| MS.gene025979.t1 | AT4G05130 | 30.175 | 401 | 244 | 11 | 37 | 415 | 26 | 412 | 2.46e-47 | 167 |
| MS.gene025979.t1 | AT1G61630 | 29.684 | 411 | 253 | 9 | 28 | 415 | 15 | 412 | 5.39e-46 | 164 |
| MS.gene025979.t1 | AT4G05140 | 29.238 | 407 | 259 | 10 | 28 | 415 | 17 | 413 | 1.70e-43 | 157 |
| MS.gene025979.t1 | AT3G09990 | 29.383 | 405 | 244 | 9 | 37 | 415 | 25 | 413 | 3.33e-43 | 156 |
Find 103 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGGGCTGTTGGGATTTC+AGG | 0.094893 | 7.1:-1642072 | MS.gene025979:CDS |
| GCTCTATTATAGCTTGGTTT+TGG | 0.174004 | 7.1:-1641013 | MS.gene025979:CDS |
| ACACTATTAACGTGTCTCTT+AGG | 0.195857 | 7.1:-1641158 | MS.gene025979:CDS |
| TACACGCAGGCGGTCATTGC+TGG | 0.225351 | 7.1:-1641988 | MS.gene025979:CDS |
| AGTGTGTTCTTCTTAGTTAT+TGG | 0.230173 | 7.1:-1641047 | MS.gene025979:CDS |
| TTCATTATAGTACTTTATAA+TGG | 0.242520 | 7.1:+1641559 | None:intergenic |
| TTGGTGCAGGGATCTATTCT+TGG | 0.258857 | 7.1:-1642036 | MS.gene025979:CDS |
| TGGCTCCGCCGGTGAGTTGC+CGG | 0.310687 | 7.1:-1642016 | MS.gene025979:CDS |
| TTCTTCTACCTTCATGTTCA+AGG | 0.339199 | 7.1:-1642443 | MS.gene025979:CDS |
| ACACATTAAAGCAAGTAATA+AGG | 0.345288 | 7.1:+1641330 | None:intergenic |
| ATCTCTGTCCGGAAGAATTT+CGG | 0.346613 | 7.1:+1641188 | None:intergenic |
| TTAGTTATTGGTCTGGCTGC+TGG | 0.347855 | 7.1:-1641035 | MS.gene025979:CDS |
| AAGCAAGTAATAAGGAGAAT+TGG | 0.349646 | 7.1:+1641338 | None:intergenic |
| ACGTCACTGCTGGGGCTGTT+GGG | 0.361788 | 7.1:-1642080 | MS.gene025979:CDS |
| TACGTCACTGCTGGGGCTGT+TGG | 0.363518 | 7.1:-1642081 | MS.gene025979:CDS |
| CTTGATGTCGTGTATGTTAA+GGG | 0.366056 | 7.1:-1642129 | MS.gene025979:CDS |
| TTTAATGTGTTTGACCTTGT+TGG | 0.367568 | 7.1:-1641317 | MS.gene025979:CDS |
| CTCTGCATGCTGCAACTTCA+CGG | 0.371199 | 7.1:+1641085 | None:intergenic |
| CTATAATGAACTTAAGATTC+AGG | 0.375812 | 7.1:-1641546 | MS.gene025979:CDS |
| TTCAGGTGTGGCTAATGCTT+TGG | 0.388115 | 7.1:-1642055 | MS.gene025979:CDS |
| ATACGGTCAACGCTTGCATC+GGG | 0.388734 | 7.1:+1642294 | None:intergenic |
| TCATTATAGTACTTTATAAT+GGG | 0.388994 | 7.1:+1641560 | None:intergenic |
| ACTCTCAGCTTCTTAAAGAT+TGG | 0.396591 | 7.1:-1641364 | MS.gene025979:CDS |
| ACACGCAGGCGGTCATTGCT+GGG | 0.398252 | 7.1:-1641987 | MS.gene025979:CDS |
| TGCACGGTCCGAAATTCTTC+CGG | 0.401715 | 7.1:-1641196 | MS.gene025979:CDS |
| CTGCTGGCTCTATTATAGCT+TGG | 0.403267 | 7.1:-1641019 | MS.gene025979:CDS |
| GTCGAGTCGGGTTGTATAAC+GGG | 0.404515 | 7.1:-1642107 | MS.gene025979:CDS |
| GTGACGCTTGCAATATTTCC+TGG | 0.410311 | 7.1:-1641407 | MS.gene025979:CDS |
| GGGTGCTTGTTTCTTTCCTA+AGG | 0.415931 | 7.1:-1641709 | MS.gene025979:CDS |
| CACTATTAACGTGTCTCTTA+GGG | 0.428475 | 7.1:-1641157 | MS.gene025979:CDS |
| GTTCTTCTTAGTTATTGGTC+TGG | 0.429994 | 7.1:-1641042 | MS.gene025979:CDS |
| CTGTCTGGAGATCAACTGTA+TGG | 0.434174 | 7.1:-1641484 | MS.gene025979:CDS |
| GGTCGAGTCGGGTTGTATAA+CGG | 0.441509 | 7.1:-1642108 | MS.gene025979:CDS |
| GCTTGATGTCGTGTATGTTA+AGG | 0.447841 | 7.1:-1642130 | MS.gene025979:CDS |
| GTCCTTTGACAGTATCTGTC+TGG | 0.460668 | 7.1:-1641499 | MS.gene025979:CDS |
| GCATCGGCTATTTGTTCCCA+TGG | 0.462726 | 7.1:-1642359 | MS.gene025979:CDS |
| CAACGCTTGCATCGGGGTAA+AGG | 0.467006 | 7.1:+1642301 | None:intergenic |
| ATACCACTTGATTGTTCCTA+AGG | 0.474334 | 7.1:+1641457 | None:intergenic |
| TGTGGCTAATGCTTTGGTGC+AGG | 0.485275 | 7.1:-1642049 | MS.gene025979:CDS |
| CACGCAGGCGGTCATTGCTG+GGG | 0.489338 | 7.1:-1641986 | MS.gene025979:CDS |
| AGAAAGTAGCAGAAGACAAA+TGG | 0.493821 | 7.1:-1642413 | MS.gene025979:CDS |
| TTAGGAACAATCAAGTGGTA+TGG | 0.496112 | 7.1:-1641455 | MS.gene025979:CDS |
| ACCATTGTCGTCTTCAACGG+CGG | 0.502286 | 7.1:+1641520 | None:intergenic |
| GTTTACACGCAAGATGCCTC+TGG | 0.510856 | 7.1:-1641671 | MS.gene025979:CDS |
| TTGCAGCATGCAGAGACTGC+GGG | 0.517119 | 7.1:-1641077 | MS.gene025979:CDS |
| TGTCTCTTAGGGCTTACAAA+TGG | 0.520478 | 7.1:-1641146 | MS.gene025979:CDS |
| TGCAAGCATCCTAAGAAGAG+AGG | 0.520652 | 7.1:+1641215 | None:intergenic |
| AATGAGATTTGTGTCGGTTG+AGG | 0.521136 | 7.1:+1642214 | None:intergenic |
| CTCTTCTTAGGATGCTTGCA+CGG | 0.521892 | 7.1:-1641212 | MS.gene025979:CDS |
| TGTATGTTAAGGGTCGAGTC+GGG | 0.521957 | 7.1:-1642119 | MS.gene025979:CDS |
| ACAATCAAGTGGTATGGGCT+CGG | 0.529311 | 7.1:-1641449 | MS.gene025979:CDS |
| ACCGCCTGCGTGTACCTCTC+CGG | 0.532675 | 7.1:+1641997 | None:intergenic |
| GGCTGTTGGGATTTCAGGTG+TGG | 0.535654 | 7.1:-1642067 | MS.gene025979:CDS |
| AAATCATCAATACACTGGTA+AGG | 0.536010 | 7.1:+1641120 | None:intergenic |
| TCAACTGTATGGGATACCTT+AGG | 0.538806 | 7.1:-1641473 | MS.gene025979:CDS |
| TGTGATTATGTTCATATGCA+TGG | 0.539930 | 7.1:-1641609 | MS.gene025979:CDS |
| GATACGGTCAACGCTTGCAT+CGG | 0.540085 | 7.1:+1642293 | None:intergenic |
| GTGTATGTTAAGGGTCGAGT+CGG | 0.540507 | 7.1:-1642120 | MS.gene025979:CDS |
| GGATCTATTCTTGGCTCCGC+CGG | 0.541157 | 7.1:-1642027 | MS.gene025979:CDS |
| ATCTACTTCACACTTGGCAT+CGG | 0.551559 | 7.1:-1642375 | MS.gene025979:CDS |
| TTTGTCGTCCTTGAACATGA+AGG | 0.552481 | 7.1:+1642435 | None:intergenic |
| TAGGAACAATCAAGTGGTAT+GGG | 0.556979 | 7.1:-1641454 | MS.gene025979:CDS |
| GTGGCTAATGCTTTGGTGCA+GGG | 0.564289 | 7.1:-1642048 | MS.gene025979:CDS |
| AGACACGTTAATAGTGTCAC+AGG | 0.565534 | 7.1:+1641164 | None:intergenic |
| AGGACCATTGTCGTCTTCAA+CGG | 0.572794 | 7.1:+1641517 | None:intergenic |
| AACATACACGACATCAAGCA+AGG | 0.573774 | 7.1:+1642134 | None:intergenic |
| GTGTCACAGGAATCTCTGTC+CGG | 0.575678 | 7.1:+1641177 | None:intergenic |
| GTACCTCTCCGGCAACTCAC+CGG | 0.590223 | 7.1:+1642008 | None:intergenic |
| AGCTAAAATCATCAATACAC+TGG | 0.598738 | 7.1:+1641115 | None:intergenic |
| TGCAAAGTAGAGCAAAGATA+CGG | 0.603721 | 7.1:+1642277 | None:intergenic |
| ACATCTTCTGTAATGTAACC+AGG | 0.604109 | 7.1:+1641389 | None:intergenic |
| ACGCAGGCGGTCATTGCTGG+GGG | 0.609305 | 7.1:-1641985 | MS.gene025979:CDS |
| TATATAATCTACTTCACACT+TGG | 0.609971 | 7.1:-1642381 | MS.gene025979:CDS |
| GTTGCAGCATGCAGAGACTG+CGG | 0.611240 | 7.1:-1641078 | MS.gene025979:CDS |
| AGGTAGAAGAAGAACAATGG+TGG | 0.611992 | 7.1:+1642455 | None:intergenic |
| CTGTGATGAATGCGTTCCAT+GGG | 0.612636 | 7.1:+1642343 | None:intergenic |
| TGTCTGGAGATCAACTGTAT+GGG | 0.613864 | 7.1:-1641483 | MS.gene025979:CDS |
| GCAAGCATCCTAAGAAGAGA+GGG | 0.616215 | 7.1:+1641216 | None:intergenic |
| GCTGTGATGAATGCGTTCCA+TGG | 0.616389 | 7.1:+1642342 | None:intergenic |
| CGTGGGAATGAGATTTGTGT+CGG | 0.618153 | 7.1:+1642208 | None:intergenic |
| AATCTTTAAGAAGCTGAGAG+TGG | 0.626615 | 7.1:+1641366 | None:intergenic |
| CCTCTCCGGCAACTCACCGG+CGG | 0.634884 | 7.1:+1642011 | None:intergenic |
| CTCCAGACAGATACTGTCAA+AGG | 0.635770 | 7.1:+1641497 | None:intergenic |
| AAGCAAGGGAACTATGAGGA+GGG | 0.636359 | 7.1:+1642149 | None:intergenic |
| ATCCAACGTTGATCCTCACG+TGG | 0.642546 | 7.1:+1642190 | None:intergenic |
| CCGCCGGTGAGTTGCCGGAG+AGG | 0.644765 | 7.1:-1642011 | MS.gene025979:CDS |
| AAGGTAAGAGAAGTAATCAA+CGG | 0.645014 | 7.1:+1642320 | None:intergenic |
| CAAGCAAGGGAACTATGAGG+AGG | 0.646036 | 7.1:+1642148 | None:intergenic |
| CATCAAGCAAGGGAACTATG+AGG | 0.650180 | 7.1:+1642145 | None:intergenic |
| GCCGGAGAGGTACACGCAGG+CGG | 0.656282 | 7.1:-1641998 | MS.gene025979:CDS |
| ACATACACGACATCAAGCAA+GGG | 0.657824 | 7.1:+1642135 | None:intergenic |
| TCCCACGTGAGGATCAACGT+TGG | 0.661083 | 7.1:-1642192 | MS.gene025979:CDS |
| TGAAGGTAGAAGAAGAACAA+TGG | 0.668431 | 7.1:+1642452 | None:intergenic |
| ACAAATCTCATTCCCACGTG+AGG | 0.669174 | 7.1:-1642203 | MS.gene025979:CDS |
| TGCAGCATGCAGAGACTGCG+GGG | 0.670996 | 7.1:-1641076 | MS.gene025979:CDS |
| TACGGTCAACGCTTGCATCG+GGG | 0.672941 | 7.1:+1642295 | None:intergenic |
| ATACCTTAGGAACAATCAAG+TGG | 0.685947 | 7.1:-1641460 | MS.gene025979:CDS |
| GGTTGAGGATGATGATGATG+AGG | 0.690333 | 7.1:+1642229 | None:intergenic |
| GCCGCCGTTGAAGACGACAA+TGG | 0.692231 | 7.1:-1641521 | MS.gene025979:CDS |
| TAATGAACTTAAGATTCAGG+CGG | 0.703355 | 7.1:-1641543 | MS.gene025979:CDS |
| TCCAACGTTGATCCTCACGT+GGG | 0.722026 | 7.1:+1642191 | None:intergenic |
| GTTGCCGGAGAGGTACACGC+AGG | 0.746866 | 7.1:-1642001 | MS.gene025979:CDS |
| CTAGAAGGTATACTGCAGTG+AGG | 0.762315 | 7.1:+1641288 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATAGTACTTTATAAT+GGG | + | chr7.1:1641918-1641937 | None:intergenic | 15.0% |
| !! | TTCATTATAGTACTTTATAA+TGG | + | chr7.1:1641919-1641938 | None:intergenic | 15.0% |
| !! | AATAAAACATGATATGAGAA+TGG | + | chr7.1:1641605-1641624 | None:intergenic | 20.0% |
| !! | ATAAAACATGATATGAGAAT+GGG | + | chr7.1:1641604-1641623 | None:intergenic | 20.0% |
| !! | GAAAGAAAAAAAAAAGAAGA+AGG | + | chr7.1:1641538-1641557 | None:intergenic | 20.0% |
| ! | ACACATTAAAGCAAGTAATA+AGG | + | chr7.1:1642148-1642167 | None:intergenic | 25.0% |
| ! | CTATAATGAACTTAAGATTC+AGG | - | chr7.1:1641929-1641948 | MS.gene025979:intron | 25.0% |
| ! | TATATAATCTACTTCACACT+TGG | - | chr7.1:1641094-1641113 | MS.gene025979:CDS | 25.0% |
| ! | TGAATGGAAAATAATGTGTA+AGG | - | chr7.1:1641676-1641695 | MS.gene025979:CDS | 25.0% |
| !! | GTAAATGGTTTTTCATTTCA+GGG | - | chr7.1:1641745-1641764 | MS.gene025979:intron | 25.0% |
| !! | TAAATGGTTTTTCATTTCAG+GGG | - | chr7.1:1641746-1641765 | MS.gene025979:intron | 25.0% |
| !!! | TTTTTTTCTTTCCCTACTTT+TGG | - | chr7.1:1641546-1641565 | MS.gene025979:CDS | 25.0% |
| AAATCATCAATACACTGGTA+AGG | + | chr7.1:1642358-1642377 | None:intergenic | 30.0% | |
| AAGCAAGTAATAAGGAGAAT+TGG | + | chr7.1:1642140-1642159 | None:intergenic | 30.0% | |
| AAGGTAAGAGAAGTAATCAA+CGG | + | chr7.1:1641158-1641177 | None:intergenic | 30.0% | |
| AGCTAAAATCATCAATACAC+TGG | + | chr7.1:1642363-1642382 | None:intergenic | 30.0% | |
| AGTGTGTTCTTCTTAGTTAT+TGG | - | chr7.1:1642428-1642447 | MS.gene025979:CDS | 30.0% | |
| GAGAATGCAAAAATTGCAAT+CGG | - | chr7.1:1642209-1642228 | MS.gene025979:CDS | 30.0% | |
| TAATGAACTTAAGATTCAGG+CGG | - | chr7.1:1641932-1641951 | MS.gene025979:intron | 30.0% | |
| TGTGATTATGTTCATATGCA+TGG | - | chr7.1:1641866-1641885 | MS.gene025979:intron | 30.0% | |
| TTTAATGTGTTTGACCTTGT+TGG | - | chr7.1:1642158-1642177 | MS.gene025979:CDS | 30.0% | |
| ! | ATTGCTTGTTTCTTGAACTT+TGG | - | chr7.1:1641718-1641737 | MS.gene025979:intron | 30.0% |
| ! | CAATTTTTGCATTCTCTAGA+AGG | + | chr7.1:1642205-1642224 | None:intergenic | 30.0% |
| ! | CAGCTTTTGTAAATATCCTT+AGG | + | chr7.1:1641785-1641804 | None:intergenic | 30.0% |
| ! | GGTAAATGGTTTTTCATTTC+AGG | - | chr7.1:1641744-1641763 | MS.gene025979:intron | 30.0% |
| ! | TTGAACTTTGGAAAGGTAAA+TGG | - | chr7.1:1641730-1641749 | MS.gene025979:intron | 30.0% |
| ! | TTGTTTCTTGAACTTTGGAA+AGG | - | chr7.1:1641723-1641742 | MS.gene025979:intron | 30.0% |
| !! | CTCTATTATAGCTTGGTTTT+GGG | - | chr7.1:1642463-1642482 | MS.gene025979:CDS | 30.0% |
| !!! | AGTTTTTTGTTTGCTGGATT+TGG | - | chr7.1:1641650-1641669 | MS.gene025979:CDS | 30.0% |
| !!! | GCAAATAGTTTTTTGTTTGC+TGG | - | chr7.1:1641644-1641663 | MS.gene025979:CDS | 30.0% |
| !!! | GTTTTTTGTTTGCTGGATTT+GGG | - | chr7.1:1641651-1641670 | MS.gene025979:CDS | 30.0% |
| ACACAACTTCAACCAAAAGT+AGG | + | chr7.1:1641561-1641580 | None:intergenic | 35.0% | |
| ACACTATTAACGTGTCTCTT+AGG | - | chr7.1:1642317-1642336 | MS.gene025979:CDS | 35.0% | |
| ACATCTTCTGTAATGTAACC+AGG | + | chr7.1:1642089-1642108 | None:intergenic | 35.0% | |
| ACTCTCAGCTTCTTAAAGAT+TGG | - | chr7.1:1642111-1642130 | MS.gene025979:CDS | 35.0% | |
| AGAAAGTAGCAGAAGACAAA+TGG | - | chr7.1:1641062-1641081 | MS.gene025979:CDS | 35.0% | |
| ATACCACTTGATTGTTCCTA+AGG | + | chr7.1:1642021-1642040 | None:intergenic | 35.0% | |
| ATACCTTAGGAACAATCAAG+TGG | - | chr7.1:1642015-1642034 | MS.gene025979:CDS | 35.0% | |
| CACAACTTCAACCAAAAGTA+GGG | + | chr7.1:1641560-1641579 | None:intergenic | 35.0% | |
| CACTATTAACGTGTCTCTTA+GGG | - | chr7.1:1642318-1642337 | MS.gene025979:CDS | 35.0% | |
| CTTGATGTCGTGTATGTTAA+GGG | - | chr7.1:1641346-1641365 | MS.gene025979:CDS | 35.0% | |
| GTTCTTCTTAGTTATTGGTC+TGG | - | chr7.1:1642433-1642452 | MS.gene025979:CDS | 35.0% | |
| TAGGAACAATCAAGTGGTAT+GGG | - | chr7.1:1642021-1642040 | MS.gene025979:CDS | 35.0% | |
| TGAAGGTAGAAGAAGAACAA+TGG | + | chr7.1:1641026-1641045 | None:intergenic | 35.0% | |
| TGCAAAGTAGAGCAAAGATA+CGG | + | chr7.1:1641201-1641220 | None:intergenic | 35.0% | |
| TTAGGAACAATCAAGTGGTA+TGG | - | chr7.1:1642020-1642039 | MS.gene025979:CDS | 35.0% | |
| TTCTTCTACCTTCATGTTCA+AGG | - | chr7.1:1641032-1641051 | MS.gene025979:CDS | 35.0% | |
| ! | AATCTTTAAGAAGCTGAGAG+TGG | + | chr7.1:1642112-1642131 | None:intergenic | 35.0% |
| ! | GCTCTATTATAGCTTGGTTT+TGG | - | chr7.1:1642462-1642481 | MS.gene025979:CDS | 35.0% |
| !! | TTGTTTTTCCCTCTCTTCTT+AGG | - | chr7.1:1642251-1642270 | MS.gene025979:CDS | 35.0% |
| AACATACACGACATCAAGCA+AGG | + | chr7.1:1641344-1641363 | None:intergenic | 40.0% | |
| ACATACACGACATCAAGCAA+GGG | + | chr7.1:1641343-1641362 | None:intergenic | 40.0% | |
| AGACACGTTAATAGTGTCAC+AGG | + | chr7.1:1642314-1642333 | None:intergenic | 40.0% | |
| AGGTAGAAGAAGAACAATGG+TGG | + | chr7.1:1641023-1641042 | None:intergenic | 40.0% | |
| ATCTACTTCACACTTGGCAT+CGG | - | chr7.1:1641100-1641119 | MS.gene025979:CDS | 40.0% | |
| ATCTCTGTCCGGAAGAATTT+CGG | + | chr7.1:1642290-1642309 | None:intergenic | 40.0% | |
| GCTTGATGTCGTGTATGTTA+AGG | - | chr7.1:1641345-1641364 | MS.gene025979:CDS | 40.0% | |
| TCAACTGTATGGGATACCTT+AGG | - | chr7.1:1642002-1642021 | MS.gene025979:CDS | 40.0% | |
| TGTCTCTTAGGGCTTACAAA+TGG | - | chr7.1:1642329-1642348 | MS.gene025979:CDS | 40.0% | |
| TGTCTGGAGATCAACTGTAT+GGG | - | chr7.1:1641992-1642011 | MS.gene025979:CDS | 40.0% | |
| TTTGTCGTCCTTGAACATGA+AGG | + | chr7.1:1641043-1641062 | None:intergenic | 40.0% | |
| ! | AGAGATTAGCACTCTTTTGC+AGG | + | chr7.1:1641830-1641849 | None:intergenic | 40.0% |
| ! | TTGCTGGATTTGGGTTTGAA+TGG | - | chr7.1:1641660-1641679 | MS.gene025979:CDS | 40.0% |
| !! | AATGAGATTTGTGTCGGTTG+AGG | + | chr7.1:1641264-1641283 | None:intergenic | 40.0% |
| AAGCAAGGGAACTATGAGGA+GGG | + | chr7.1:1641329-1641348 | None:intergenic | 45.0% | |
| ACAAATCTCATTCCCACGTG+AGG | - | chr7.1:1641272-1641291 | MS.gene025979:CDS | 45.0% | |
| ACAATCAAGTGGTATGGGCT+CGG | - | chr7.1:1642026-1642045 | MS.gene025979:CDS | 45.0% | |
| AGGACCATTGTCGTCTTCAA+CGG | + | chr7.1:1641961-1641980 | None:intergenic | 45.0% | |
| CATCAAGCAAGGGAACTATG+AGG | + | chr7.1:1641333-1641352 | None:intergenic | 45.0% | |
| CGTGGGAATGAGATTTGTGT+CGG | + | chr7.1:1641270-1641289 | None:intergenic | 45.0% | |
| CTCCAGACAGATACTGTCAA+AGG | + | chr7.1:1641981-1642000 | None:intergenic | 45.0% | |
| CTCTTCTTAGGATGCTTGCA+CGG | - | chr7.1:1642263-1642282 | MS.gene025979:CDS | 45.0% | |
| CTGTCTGGAGATCAACTGTA+TGG | - | chr7.1:1641991-1642010 | MS.gene025979:CDS | 45.0% | |
| CTGTGATGAATGCGTTCCAT+GGG | + | chr7.1:1641135-1641154 | None:intergenic | 45.0% | |
| GCAAGCATCCTAAGAAGAGA+GGG | + | chr7.1:1642262-1642281 | None:intergenic | 45.0% | |
| GTCCTTTGACAGTATCTGTC+TGG | - | chr7.1:1641976-1641995 | MS.gene025979:CDS | 45.0% | |
| GTGACGCTTGCAATATTTCC+TGG | - | chr7.1:1642068-1642087 | MS.gene025979:CDS | 45.0% | |
| GTGTATGTTAAGGGTCGAGT+CGG | - | chr7.1:1641355-1641374 | MS.gene025979:CDS | 45.0% | |
| TGCAAGCATCCTAAGAAGAG+AGG | + | chr7.1:1642263-1642282 | None:intergenic | 45.0% | |
| TGTATGTTAAGGGTCGAGTC+GGG | - | chr7.1:1641356-1641375 | MS.gene025979:CDS | 45.0% | |
| TTCAGGTGTGGCTAATGCTT+TGG | - | chr7.1:1641420-1641439 | MS.gene025979:CDS | 45.0% | |
| TTGGTGCAGGGATCTATTCT+TGG | - | chr7.1:1641439-1641458 | MS.gene025979:CDS | 45.0% | |
| ! | CTAGAAGGTATACTGCAGTG+AGG | + | chr7.1:1642190-1642209 | None:intergenic | 45.0% |
| ! | GGGTGCTTGTTTCTTTCCTA+AGG | - | chr7.1:1641766-1641785 | MS.gene025979:intron | 45.0% |
| ! | GGTTGAGGATGATGATGATG+AGG | + | chr7.1:1641249-1641268 | None:intergenic | 45.0% |
| ! | TGCTGCAACTTCACGGTTTT+AGG | + | chr7.1:1642386-1642405 | None:intergenic | 45.0% |
| ! | TTAGTTATTGGTCTGGCTGC+TGG | - | chr7.1:1642440-1642459 | MS.gene025979:CDS | 45.0% |
| !! | CTGCTGGCTCTATTATAGCT+TGG | - | chr7.1:1642456-1642475 | MS.gene025979:CDS | 45.0% |
| ACCATTGTCGTCTTCAACGG+CGG | + | chr7.1:1641958-1641977 | None:intergenic | 50.0% | |
| ATACGGTCAACGCTTGCATC+GGG | + | chr7.1:1641184-1641203 | None:intergenic | 50.0% | |
| ATCCAACGTTGATCCTCACG+TGG | + | chr7.1:1641288-1641307 | None:intergenic | 50.0% | |
| CAAGCAAGGGAACTATGAGG+AGG | + | chr7.1:1641330-1641349 | None:intergenic | 50.0% | |
| CTCTGCATGCTGCAACTTCA+CGG | + | chr7.1:1642393-1642412 | None:intergenic | 50.0% | |
| GATACGGTCAACGCTTGCAT+CGG | + | chr7.1:1641185-1641204 | None:intergenic | 50.0% | |
| GCTGTGATGAATGCGTTCCA+TGG | + | chr7.1:1641136-1641155 | None:intergenic | 50.0% | |
| GTGTCACAGGAATCTCTGTC+CGG | + | chr7.1:1642301-1642320 | None:intergenic | 50.0% | |
| GTTTACACGCAAGATGCCTC+TGG | - | chr7.1:1641804-1641823 | MS.gene025979:intron | 50.0% | |
| TCCAACGTTGATCCTCACGT+GGG | + | chr7.1:1641287-1641306 | None:intergenic | 50.0% | |
| TGCACGGTCCGAAATTCTTC+CGG | - | chr7.1:1642279-1642298 | MS.gene025979:CDS | 50.0% | |
| ! | ACGGGTTTTACGTCACTGCT+GGG | - | chr7.1:1641386-1641405 | MS.gene025979:CDS | 50.0% |
| ! | CAGTGAGGCTTTTGCCAACA+AGG | + | chr7.1:1642175-1642194 | None:intergenic | 50.0% |
| ! | GGTCGAGTCGGGTTGTATAA+CGG | - | chr7.1:1641367-1641386 | MS.gene025979:CDS | 50.0% |
| ! | GTCGAGTCGGGTTGTATAAC+GGG | - | chr7.1:1641368-1641387 | MS.gene025979:CDS | 50.0% |
| ! | GTGGCTAATGCTTTGGTGCA+GGG | - | chr7.1:1641427-1641446 | MS.gene025979:CDS | 50.0% |
| ! | TGTGGCTAATGCTTTGGTGC+AGG | - | chr7.1:1641426-1641445 | MS.gene025979:CDS | 50.0% |
| !! | AACGGGTTTTACGTCACTGC+TGG | - | chr7.1:1641385-1641404 | MS.gene025979:CDS | 50.0% |
| !! | GCATCGGCTATTTGTTCCCA+TGG | - | chr7.1:1641116-1641135 | MS.gene025979:CDS | 50.0% |
| CAACGCTTGCATCGGGGTAA+AGG | + | chr7.1:1641177-1641196 | None:intergenic | 55.0% | |
| GGATCTATTCTTGGCTCCGC+CGG | - | chr7.1:1641448-1641467 | MS.gene025979:CDS | 55.0% | |
| GTTGCAGCATGCAGAGACTG+CGG | - | chr7.1:1642397-1642416 | MS.gene025979:CDS | 55.0% | |
| TACGGTCAACGCTTGCATCG+GGG | + | chr7.1:1641183-1641202 | None:intergenic | 55.0% | |
| TCCCACGTGAGGATCAACGT+TGG | - | chr7.1:1641283-1641302 | MS.gene025979:CDS | 55.0% | |
| TTGCAGCATGCAGAGACTGC+GGG | - | chr7.1:1642398-1642417 | MS.gene025979:CDS | 55.0% | |
| ! | AGCACTCTTTTGCAGGCCAG+AGG | + | chr7.1:1641823-1641842 | None:intergenic | 55.0% |
| ! | CGGGTTTTACGTCACTGCTG+GGG | - | chr7.1:1641387-1641406 | MS.gene025979:CDS | 55.0% |
| ! | GGCTGTTGGGATTTCAGGTG+TGG | - | chr7.1:1641408-1641427 | MS.gene025979:CDS | 55.0% |
| ACACGCAGGCGGTCATTGCT+GGG | - | chr7.1:1641488-1641507 | MS.gene025979:CDS | 60.0% | |
| ACGTCACTGCTGGGGCTGTT+GGG | - | chr7.1:1641395-1641414 | MS.gene025979:CDS | 60.0% | |
| GCCGCCGTTGAAGACGACAA+TGG | - | chr7.1:1641954-1641973 | MS.gene025979:intron | 60.0% | |
| GCTGGGGCTGTTGGGATTTC+AGG | - | chr7.1:1641403-1641422 | MS.gene025979:CDS | 60.0% | |
| GTACCTCTCCGGCAACTCAC+CGG | + | chr7.1:1641470-1641489 | None:intergenic | 60.0% | |
| TACACGCAGGCGGTCATTGC+TGG | - | chr7.1:1641487-1641506 | MS.gene025979:CDS | 60.0% | |
| TACGTCACTGCTGGGGCTGT+TGG | - | chr7.1:1641394-1641413 | MS.gene025979:CDS | 60.0% | |
| TGCAGCATGCAGAGACTGCG+GGG | - | chr7.1:1642399-1642418 | MS.gene025979:CDS | 60.0% | |
| !! | ATTGCTGGGGGTGCTGCTTC+TGG | - | chr7.1:1641502-1641521 | MS.gene025979:CDS | 60.0% |
| ACCGCCTGCGTGTACCTCTC+CGG | + | chr7.1:1641481-1641500 | None:intergenic | 65.0% | |
| ACGCAGGCGGTCATTGCTGG+GGG | - | chr7.1:1641490-1641509 | MS.gene025979:CDS | 65.0% | |
| CACGCAGGCGGTCATTGCTG+GGG | - | chr7.1:1641489-1641508 | MS.gene025979:CDS | 65.0% | |
| ! | GTTGCCGGAGAGGTACACGC+AGG | - | chr7.1:1641474-1641493 | MS.gene025979:CDS | 65.0% |
| CCTCTCCGGCAACTCACCGG+CGG | + | chr7.1:1641467-1641486 | None:intergenic | 70.0% | |
| TGGCTCCGCCGGTGAGTTGC+CGG | - | chr7.1:1641459-1641478 | MS.gene025979:CDS | 70.0% | |
| ! | GCCGGAGAGGTACACGCAGG+CGG | - | chr7.1:1641477-1641496 | MS.gene025979:CDS | 70.0% |
| CCGCCGGTGAGTTGCCGGAG+AGG | - | chr7.1:1641464-1641483 | MS.gene025979:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 1641004 | 1642493 | 1641004 | ID=MS.gene025979 |
| chr7.1 | mRNA | 1641004 | 1642493 | 1641004 | ID=MS.gene025979.t1;Parent=MS.gene025979 |
| chr7.1 | exon | 1641974 | 1642493 | 1641974 | ID=MS.gene025979.t1.exon1;Parent=MS.gene025979.t1 |
| chr7.1 | CDS | 1641974 | 1642493 | 1641974 | ID=cds.MS.gene025979.t1;Parent=MS.gene025979.t1 |
| chr7.1 | exon | 1641004 | 1641731 | 1641004 | ID=MS.gene025979.t1.exon2;Parent=MS.gene025979.t1 |
| chr7.1 | CDS | 1641004 | 1641731 | 1641004 | ID=cds.MS.gene025979.t1;Parent=MS.gene025979.t1 |
| Gene Sequence |
| Protein sequence |
