Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026044.t1 | AES82636.2 | 98.3 | 661 | 11 | 0 | 1 | 661 | 59 | 719 | 0.00E+00 | 1252.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026044.t1 | Q08647 | 34.1 | 706 | 342 | 21 | 2 | 661 | 36 | 664 | 5.2e-87 | 324.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026044.t1 | G7L1T8 | 98.3 | 661 | 11 | 0 | 1 | 661 | 59 | 719 | 0.0e+00 | 1252.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene026044.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026044 | MS.gene21679 | PPI |
| MS.gene026044 | MS.gene21951 | PPI |
| MS.gene026044 | MS.gene42882 | PPI |
| MS.gene026044 | MS.gene024701 | PPI |
| MS.gene026044 | MS.gene98681 | PPI |
| MS.gene026044 | MS.gene024348 | PPI |
| MS.gene026044 | MS.gene22289 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026044.t1 | MTR_7g114850 | 98.487 | 661 | 10 | 0 | 1 | 661 | 59 | 719 | 0.0 | 1345 |
| MS.gene026044.t1 | MTR_7g114860 | 87.688 | 398 | 23 | 5 | 663 | 1058 | 110 | 483 | 0.0 | 650 |
| MS.gene026044.t1 | MTR_1g081180 | 46.789 | 436 | 173 | 15 | 667 | 1063 | 98 | 513 | 8.23e-98 | 321 |
| MS.gene026044.t1 | MTR_1g098870 | 32.353 | 272 | 134 | 7 | 804 | 1059 | 229 | 466 | 5.01e-32 | 133 |
| MS.gene026044.t1 | MTR_1g098870 | 42.424 | 99 | 47 | 2 | 956 | 1054 | 55 | 143 | 2.21e-14 | 77.8 |
| MS.gene026044.t1 | MTR_2g026725 | 31.250 | 256 | 137 | 9 | 816 | 1052 | 114 | 349 | 3.42e-29 | 121 |
| MS.gene026044.t1 | MTR_1g098900 | 58.000 | 100 | 33 | 2 | 956 | 1055 | 454 | 544 | 6.23e-28 | 121 |
| MS.gene026044.t1 | MTR_1g098900 | 44.792 | 96 | 43 | 2 | 956 | 1051 | 57 | 142 | 3.93e-15 | 80.5 |
| MS.gene026044.t1 | MTR_6g035370 | 55.238 | 105 | 38 | 2 | 956 | 1060 | 464 | 559 | 2.21e-27 | 119 |
| MS.gene026044.t1 | MTR_6g035370 | 41.837 | 98 | 47 | 2 | 956 | 1053 | 55 | 142 | 2.19e-14 | 78.2 |
| MS.gene026044.t1 | MTR_1g492790 | 42.268 | 97 | 45 | 3 | 956 | 1051 | 114 | 200 | 4.37e-13 | 73.6 |
| MS.gene026044.t1 | MTR_1g060990 | 38.462 | 104 | 53 | 3 | 956 | 1058 | 131 | 224 | 2.01e-12 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026044.t1 | AT3G04820 | 59.195 | 696 | 226 | 7 | 1 | 662 | 37 | 708 | 0.0 | 822 |
| MS.gene026044.t1 | AT5G28300 | 47.143 | 280 | 93 | 7 | 813 | 1054 | 296 | 558 | 1.71e-63 | 228 |
| MS.gene026044.t1 | AT1G76890 | 38.182 | 275 | 130 | 10 | 791 | 1055 | 243 | 487 | 4.16e-39 | 154 |
| MS.gene026044.t1 | AT1G76890 | 36.111 | 144 | 76 | 4 | 956 | 1093 | 41 | 174 | 5.29e-15 | 80.1 |
| MS.gene026044.t1 | AT1G33240 | 34.444 | 270 | 132 | 8 | 815 | 1052 | 227 | 483 | 1.16e-29 | 126 |
| MS.gene026044.t1 | AT5G47660 | 30.769 | 247 | 143 | 7 | 807 | 1052 | 169 | 388 | 3.30e-26 | 112 |
| MS.gene026044.t1 | AT1G76880 | 54.000 | 100 | 37 | 2 | 956 | 1055 | 408 | 498 | 5.93e-26 | 114 |
| MS.gene026044.t1 | AT1G76880 | 39.535 | 129 | 59 | 4 | 947 | 1066 | 48 | 166 | 9.26e-16 | 82.4 |
| MS.gene026044.t1 | AT1G33240 | 56.701 | 97 | 33 | 3 | 956 | 1052 | 435 | 522 | 5.04e-25 | 112 |
| MS.gene026044.t1 | AT1G33240 | 42.708 | 96 | 45 | 2 | 956 | 1051 | 62 | 147 | 3.75e-16 | 84.0 |
| MS.gene026044.t1 | AT1G33240 | 56.701 | 97 | 33 | 3 | 956 | 1052 | 435 | 522 | 6.40e-25 | 112 |
| MS.gene026044.t1 | AT1G33240 | 42.708 | 96 | 45 | 2 | 956 | 1051 | 62 | 147 | 3.52e-16 | 84.0 |
| MS.gene026044.t1 | AT3G10000 | 40.000 | 100 | 50 | 3 | 956 | 1054 | 88 | 178 | 1.28e-13 | 75.1 |
| MS.gene026044.t1 | AT5G03680 | 38.776 | 98 | 49 | 3 | 956 | 1052 | 119 | 206 | 1.37e-12 | 72.4 |
| MS.gene026044.t1 | AT5G03680 | 26.506 | 249 | 150 | 10 | 806 | 1046 | 284 | 507 | 6.78e-11 | 67.0 |
| MS.gene026044.t1 | AT3G10000 | 36.364 | 99 | 45 | 3 | 956 | 1054 | 88 | 168 | 4.65e-11 | 67.0 |
Find 216 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTATTCCACGAACTTTA+AGG | 0.099204 | 7.3:+2383806 | MS.gene026044:CDS |
| GTATTAAAGTGGGTGATTTC+TGG | 0.173309 | 7.3:+2382665 | MS.gene026044:CDS |
| AGATTGTTACAAGGATTATT+AGG | 0.181963 | 7.3:-2403482 | None:intergenic |
| TACCAAACAACTTCTCATTA+AGG | 0.205495 | 7.3:-2382645 | None:intergenic |
| GAGACAGATTTAGATAAAAT+TGG | 0.218605 | 7.3:+2399331 | MS.gene026044:CDS |
| CGCACTGTGTTGACAATTAT+AGG | 0.247542 | 7.3:-2399364 | None:intergenic |
| ACAGTAGAGGTTCTGAAAAT+TGG | 0.256567 | 7.3:+2380841 | MS.gene026044:CDS |
| TATCTTTGTTCTCCTTATAA+AGG | 0.275273 | 7.3:-2381681 | None:intergenic |
| TGATCAACGGTGGTGGAGTT+TGG | 0.283034 | 7.3:-2402672 | None:intergenic |
| TGTGGTAATATTACTTCCTT+TGG | 0.298357 | 7.3:-2399454 | None:intergenic |
| TGCTACATTTCCAACCTTCC+TGG | 0.299243 | 7.3:+2379673 | MS.gene026044:CDS |
| TTATAGGTTTCACCTTTATA+AGG | 0.313323 | 7.3:+2381669 | MS.gene026044:intron |
| CAAAGATACCCAGGAAGCTT+TGG | 0.321227 | 7.3:+2381696 | MS.gene026044:CDS |
| TAGGGAAAACTTCAAGTTCC+TGG | 0.321615 | 7.3:+2380692 | MS.gene026044:CDS |
| CCGTTTCAGCAACTAAGAAT+TGG | 0.321676 | 7.3:-2383581 | None:intergenic |
| GAACTGAGTTGATGAAAATA+AGG | 0.325543 | 7.3:-2403893 | None:intergenic |
| CGTTTCAGCAACTAAGAATT+GGG | 0.329151 | 7.3:-2383580 | None:intergenic |
| CTCGGTCACCATGAATTCTA+TGG | 0.329174 | 7.3:+2379627 | None:intergenic |
| TACAATATGACCATTTGAAT+TGG | 0.335962 | 7.3:-2403984 | None:intergenic |
| GGATTCTGATGCGTCTAGTT+TGG | 0.338991 | 7.3:+2380123 | MS.gene026044:CDS |
| TTCTCGATCACTAGTGTTAC+TGG | 0.339169 | 7.3:+2399117 | MS.gene026044:CDS |
| GTGTTCTTCCATAGAATTCA+TGG | 0.340177 | 7.3:-2379635 | None:intergenic |
| GGAACTGAACAAGTAGTATT+AGG | 0.341715 | 7.3:+2384873 | MS.gene026044:intron |
| GTTGAAGGAAATAGTAATAA+AGG | 0.341852 | 7.3:+2403710 | MS.gene026044:CDS |
| CATCATCAGAGCTCTCTAAT+TGG | 0.343057 | 7.3:-2399429 | None:intergenic |
| GATTGTTACAAGGATTATTA+GGG | 0.345761 | 7.3:-2403481 | None:intergenic |
| TCTGCTATCACATTAGAAAA+AGG | 0.348185 | 7.3:-2403518 | None:intergenic |
| ATGTTCACTGCTCAGCGTTT+TGG | 0.349350 | 7.3:+2383256 | MS.gene026044:intron |
| AACTGACAGTCGAGATCATT+TGG | 0.352346 | 7.3:+2382417 | MS.gene026044:intron |
| AAAGCCTGCAAGTAGTTTCC+AGG | 0.358570 | 7.3:-2383781 | None:intergenic |
| AGAAACCAATTGACTTTGAA+TGG | 0.360331 | 7.3:+2399160 | MS.gene026044:CDS |
| AAAGATACCCAGGAAGCTTT+GGG | 0.362115 | 7.3:+2381697 | MS.gene026044:CDS |
| ATAACTTATAACTTCAGTTT+CGG | 0.362929 | 7.3:-2380065 | None:intergenic |
| TGCAGTAACCTAGCTGAGTT+TGG | 0.364718 | 7.3:+2402876 | MS.gene026044:intron |
| TCCCTTAATGAGAAGTTGTT+TGG | 0.368656 | 7.3:+2382643 | MS.gene026044:CDS |
| TCGAGATCATTTGGATTTGC+GGG | 0.369117 | 7.3:+2382426 | MS.gene026044:CDS |
| CTCTGTCTTGGTCAGCTATT+CGG | 0.371127 | 7.3:+2382789 | MS.gene026044:CDS |
| CGAATCATCTTCTTCGTGTT+GGG | 0.376149 | 7.3:-2403084 | None:intergenic |
| GAATCCTTTAAGTCTCTTGC+GGG | 0.385870 | 7.3:+2380100 | MS.gene026044:CDS |
| AAAGATACCAATGATGTTGC+TGG | 0.386798 | 7.3:+2383540 | MS.gene026044:CDS |
| ATACACTTTGACAATATCAT+TGG | 0.387320 | 7.3:-2389649 | None:intergenic |
| GTTGGATGTTTGGTTAATTG+AGG | 0.388574 | 7.3:-2403959 | None:intergenic |
| TGAATTGGAGGTTGGATGTT+TGG | 0.388613 | 7.3:-2403969 | None:intergenic |
| GATCAACGGTGGTGGAGTTT+GGG | 0.391573 | 7.3:-2402671 | None:intergenic |
| GTCATCATCATCACAGTGTT+TGG | 0.398713 | 7.3:-2403126 | None:intergenic |
| GTACATGAAGTAGATTTAGA+TGG | 0.399108 | 7.3:+2379818 | MS.gene026044:CDS |
| CATGGCTTCATTAACTACTT+TGG | 0.402779 | 7.3:+2383027 | MS.gene026044:CDS |
| ACCAAACAACTTCTCATTAA+GGG | 0.404620 | 7.3:-2382644 | None:intergenic |
| CCGACGTCATCATCACATTC+AGG | 0.410342 | 7.3:-2384951 | None:intergenic |
| CTAGTGTTACTGGAAGTTAC+AGG | 0.422890 | 7.3:+2399127 | MS.gene026044:CDS |
| CAGTCTTCTGATTCTCCAAT+GGG | 0.423197 | 7.3:+2404025 | MS.gene026044:CDS |
| AAATCCTGGAAACTACTTGC+AGG | 0.424190 | 7.3:+2383777 | MS.gene026044:CDS |
| CTCTCCGATTACTCTTTCTC+CGG | 0.424800 | 7.3:+2380189 | MS.gene026044:CDS |
| GTCGAGATCATTTGGATTTG+CGG | 0.432531 | 7.3:+2382425 | MS.gene026044:intron |
| TCGAATCATCTTCTTCGTGT+TGG | 0.432686 | 7.3:-2403085 | None:intergenic |
| AGGTCAACTTGAGAGCAGTA+TGG | 0.438734 | 7.3:-2399513 | None:intergenic |
| TCCCATGTGATGAGTTGATC+TGG | 0.439124 | 7.3:-2402766 | None:intergenic |
| CACATCATCCTTAAAGTTCG+TGG | 0.439826 | 7.3:-2383814 | None:intergenic |
| CCAATTCTTAGTTGCTGAAA+CGG | 0.442115 | 7.3:+2383581 | MS.gene026044:CDS |
| CTCTGAAGGGATGTTTGAGT+TGG | 0.442279 | 7.3:+2403751 | MS.gene026044:CDS |
| CTTGAAGATCACTAACAAAC+CGG | 0.444929 | 7.3:-2402995 | None:intergenic |
| GTTCAAGAATTCAATGATGT+TGG | 0.446172 | 7.3:-2403405 | None:intergenic |
| CATTGGAGCCGCATTACTCC+GGG | 0.446329 | 7.3:+2383303 | MS.gene026044:CDS |
| AAGTTCGTCGTTAGTCCAGC+TGG | 0.453547 | 7.3:-2402701 | None:intergenic |
| CCTTGTTGTGCCTACAGTAA+TGG | 0.454776 | 7.3:+2403589 | MS.gene026044:CDS |
| GCATTGGAGCCGCATTACTC+CGG | 0.456062 | 7.3:+2383302 | MS.gene026044:CDS |
| GAATCCGGAGAAAGAGTAAT+CGG | 0.456760 | 7.3:-2380193 | None:intergenic |
| TTGTCCAGTTATGTTAATGA+AGG | 0.457437 | 7.3:+2382765 | MS.gene026044:intron |
| AAAATGCTGGCAAGTTCCTT+AGG | 0.459083 | 7.3:+2380868 | MS.gene026044:CDS |
| TCAGAACCTCTACTGTCAAA+AGG | 0.461761 | 7.3:-2380834 | None:intergenic |
| AGAAGCAACAATAATGTTGA+AGG | 0.463341 | 7.3:+2403695 | MS.gene026044:CDS |
| TACTCTGTGTCACTTGAGCT+AGG | 0.463574 | 7.3:-2403548 | None:intergenic |
| TTTATTAATCAAATTAGTGC+TGG | 0.466579 | 7.3:+2380151 | MS.gene026044:CDS |
| ACAGATTTACAATCACATTA+CGG | 0.467355 | 7.3:+2382814 | MS.gene026044:CDS |
| GGGGTGCTTGGACATATGCT+TGG | 0.467796 | 7.3:+2381718 | MS.gene026044:CDS |
| AATATGACCATTTGAATTGG+AGG | 0.468145 | 7.3:-2403981 | None:intergenic |
| TACAGTAATGGAGAAATTAG+AGG | 0.476780 | 7.3:+2403601 | MS.gene026044:CDS |
| AGAAAAGGTCAATGGATTCA+AGG | 0.476864 | 7.3:+2403864 | MS.gene026044:CDS |
| ATGTACCATTCAAAGTCAAT+TGG | 0.478182 | 7.3:-2399165 | None:intergenic |
| GATCTTCAAGATCTTTATCA+AGG | 0.479140 | 7.3:+2403008 | MS.gene026044:CDS |
| ACCTCTACTGTCAAAAGGCT+TGG | 0.484633 | 7.3:-2380829 | None:intergenic |
| CGATGGGATTTATCAGAATC+CGG | 0.485429 | 7.3:-2380208 | None:intergenic |
| GAAGAGTGCTCAAAATTGTA+AGG | 0.485968 | 7.3:+2402905 | MS.gene026044:CDS |
| TGATGATGACAAGGTGATGA+TGG | 0.486019 | 7.3:+2403139 | MS.gene026044:CDS |
| AAAGCTGCTGCAGATTCCTT+AGG | 0.490229 | 7.3:+2383000 | MS.gene026044:CDS |
| CATCCAACCTCCAATTCAAA+TGG | 0.490841 | 7.3:+2403974 | MS.gene026044:CDS |
| TAATGGAGAAATTAGAGGAT+AGG | 0.491187 | 7.3:+2403606 | MS.gene026044:CDS |
| TAGTAATAAAGGACCTTTGT+GGG | 0.496078 | 7.3:+2403721 | MS.gene026044:CDS |
| AAAAGTTTAAAACAAAATCC+TGG | 0.496973 | 7.3:+2383763 | MS.gene026044:CDS |
| GCGTGCACTAAATGAGCAAA+AGG | 0.498418 | 7.3:+2399384 | MS.gene026044:CDS |
| TCAAGAAAAGCTTGCTAGAG+AGG | 0.499159 | 7.3:+2403304 | MS.gene026044:CDS |
| AGTGCCAACACTTCATCTCT+TGG | 0.501001 | 7.3:-2403638 | None:intergenic |
| AGAAATTAGAGGATAGGAGA+AGG | 0.501494 | 7.3:+2403612 | MS.gene026044:CDS |
| TCTGAAGGGATGTTTGAGTT+GGG | 0.503163 | 7.3:+2403752 | MS.gene026044:CDS |
| GGAATCTAAGCTTGCAGCAG+TGG | 0.504509 | 7.3:+2379880 | MS.gene026044:CDS |
| GTTAATGAAGGACTCTGTCT+TGG | 0.505352 | 7.3:+2382777 | MS.gene026044:CDS |
| AATAACGAAGATGAAGTCTC+TGG | 0.506425 | 7.3:+2384990 | MS.gene026044:CDS |
| GGAACAACGCAGCAAGTACA+AGG | 0.508464 | 7.3:+2384649 | MS.gene026044:CDS |
| ACTTTGACAATATCATTGGT+TGG | 0.509849 | 7.3:-2389645 | None:intergenic |
| TGACCATTTGAATTGGAGGT+TGG | 0.512037 | 7.3:-2403977 | None:intergenic |
| TCAGTCTTCTGATTCTCCAA+TGG | 0.512323 | 7.3:+2404024 | MS.gene026044:CDS |
| TTTAAAACTCCACGGAAGCC+AGG | 0.512523 | 7.3:-2379691 | None:intergenic |
| GCGTGCTGTCACGACCCAAC+AGG | 0.513803 | 7.3:+2382461 | MS.gene026044:CDS |
| TTGTTGTGAATAAGAAGAAA+AGG | 0.514743 | 7.3:+2403849 | MS.gene026044:CDS |
| TCCACGGAAGCCAGGAAGGT+TGG | 0.519048 | 7.3:-2379683 | None:intergenic |
| GAAAATTGGCCAGAAAATGC+TGG | 0.523262 | 7.3:+2380855 | MS.gene026044:CDS |
| GTTCTTGTTTCAGAGTGTCC+AGG | 0.523822 | 7.3:+2380021 | MS.gene026044:intron |
| CTTAGTTGCTGAAACGGCCG+TGG | 0.523904 | 7.3:+2383587 | MS.gene026044:CDS |
| CAAAAGAAATAGCTATGTAA+AGG | 0.523910 | 7.3:+2385025 | MS.gene026044:CDS |
| GAATCGATGATCAACGGTGG+TGG | 0.526899 | 7.3:-2402679 | None:intergenic |
| TTCTTCATCTTATGCGACAA+TGG | 0.529849 | 7.3:+2399546 | MS.gene026044:CDS |
| TCTAATTTCTCCATTACTGT+AGG | 0.530749 | 7.3:-2403599 | None:intergenic |
| TCTAAATCTGTCTCTACCAA+TGG | 0.530928 | 7.3:-2399322 | None:intergenic |
| GAATAAGAAGAAAAGGTCAA+TGG | 0.531680 | 7.3:+2403856 | MS.gene026044:CDS |
| TGAATCCTTTAAGTCTCTTG+CGG | 0.531699 | 7.3:+2380099 | MS.gene026044:CDS |
| GAAGTTGTTTGGTATTAAAG+TGG | 0.532395 | 7.3:+2382654 | MS.gene026044:CDS |
| CGTTGATCATCGATTCCAGC+TGG | 0.533603 | 7.3:+2402686 | MS.gene026044:CDS |
| GCAGTAACCTAGCTGAGTTT+GGG | 0.534684 | 7.3:+2402877 | MS.gene026044:intron |
| CAAGATCTTTATCAAGGTGG+TGG | 0.535018 | 7.3:+2403014 | MS.gene026044:CDS |
| AATGAAGCCATGCCGTCCTA+AGG | 0.537439 | 7.3:-2383016 | None:intergenic |
| GGTCAACTTGAGAGCAGTAT+GGG | 0.537715 | 7.3:-2399512 | None:intergenic |
| AAGTGTCCCAGCAACATCAT+TGG | 0.539742 | 7.3:-2383547 | None:intergenic |
| AGGAAGGTTGGAAATGTAGC+AGG | 0.540849 | 7.3:-2379671 | None:intergenic |
| ACTCTGTGTCACTTGAGCTA+GGG | 0.543713 | 7.3:-2403547 | None:intergenic |
| TCTTGATCCCAAACTCAGCT+AGG | 0.544804 | 7.3:-2402884 | None:intergenic |
| CATCGACTGTGTCAGTGACC+AGG | 0.548446 | 7.3:-2380710 | None:intergenic |
| ATCCGTGTGAGATTGAATTC+TGG | 0.549735 | 7.3:+2380756 | MS.gene026044:CDS |
| AGATGAAGAAGGAAGAGTAA+AGG | 0.549861 | 7.3:-2399533 | None:intergenic |
| GATCAAACTTACCCTGGCAT+AGG | 0.550095 | 7.3:-2389499 | None:intergenic |
| TCTGTGCCCACTCATCGCAT+TGG | 0.551760 | 7.3:+2383286 | MS.gene026044:CDS |
| ATAGTTATCAAAGCTATTTG+TGG | 0.553588 | 7.3:+2384628 | MS.gene026044:CDS |
| AGTCTTGAGAGCTGGAGTCA+TGG | 0.554121 | 7.3:-2399489 | None:intergenic |
| TCGTATTTATACTACCCCAT+TGG | 0.554200 | 7.3:-2404040 | None:intergenic |
| GATGTCATCCTTCCTATGCC+AGG | 0.554785 | 7.3:+2389487 | MS.gene026044:CDS |
| TGGACATATGCTTGGCGTCA+AGG | 0.557654 | 7.3:+2381726 | MS.gene026044:CDS |
| ACCTTTGCTTTAAAACTCCA+CGG | 0.557959 | 7.3:-2379699 | None:intergenic |
| TCAACATTTCAAATCTATCA+CGG | 0.560758 | 7.3:-2403193 | None:intergenic |
| TCTATGGAAGAACACGATGT+TGG | 0.562361 | 7.3:+2379643 | MS.gene026044:CDS |
| ACAAGTAGTATTAGGAGACT+TGG | 0.563868 | 7.3:+2384881 | MS.gene026044:CDS |
| TCCAACCTTCCTGGCTTCCG+TGG | 0.564068 | 7.3:+2379682 | MS.gene026044:CDS |
| CCATTACTGTAGGCACAACA+AGG | 0.565092 | 7.3:-2403589 | None:intergenic |
| GACTGATACTAACCGTCCGA+TGG | 0.567131 | 7.3:-2380225 | None:intergenic |
| TACTGATAGTAATAAGCCAT+TGG | 0.567717 | 7.3:+2399306 | MS.gene026044:CDS |
| AGTATGGGAGTCTTGAGAGC+TGG | 0.568108 | 7.3:-2399497 | None:intergenic |
| AGCTTGCTAGAGAGGAAGCA+TGG | 0.569276 | 7.3:+2403312 | MS.gene026044:CDS |
| AAGATACCAATGATGTTGCT+GGG | 0.573340 | 7.3:+2383541 | MS.gene026044:CDS |
| TTGTGGGAGAGAATCTCTGA+AGG | 0.575460 | 7.3:+2403737 | MS.gene026044:CDS |
| GCAGATTCCTTAGGACGGCA+TGG | 0.576928 | 7.3:+2383009 | MS.gene026044:CDS |
| ATTTGGATTTGCGGGTACAA+AGG | 0.577304 | 7.3:+2382434 | MS.gene026044:CDS |
| ATAGTAATAAAGGACCTTTG+TGG | 0.578204 | 7.3:+2403720 | MS.gene026044:CDS |
| TCCCAGATCAACTCATCACA+TGG | 0.578469 | 7.3:+2402764 | MS.gene026044:CDS |
| GAGCTCTGATGATGCTCCAA+AGG | 0.578873 | 7.3:+2399438 | MS.gene026044:CDS |
| AAGTTGTTTGGTATTAAAGT+GGG | 0.579913 | 7.3:+2382655 | MS.gene026044:CDS |
| TAACACTTGTAGTAGACTTG+AGG | 0.580589 | 7.3:-2403667 | None:intergenic |
| TGCGGCTCCAATGCGATGAG+TGG | 0.581485 | 7.3:-2383293 | None:intergenic |
| GAATCAGAAGACTGAGCTTG+AGG | 0.581830 | 7.3:-2404016 | None:intergenic |
| TTGAACAAATATCTAGCCAC+AGG | 0.583846 | 7.3:+2403422 | MS.gene026044:CDS |
| AGGCACAACAAGGGTAGAAG+TGG | 0.586674 | 7.3:-2403579 | None:intergenic |
| ACTGATACTAACCGTCCGAT+GGG | 0.586844 | 7.3:-2380224 | None:intergenic |
| ATCTGGGAAGAAATTGTGAA+TGG | 0.587163 | 7.3:-2402749 | None:intergenic |
| CCCATGTGATGAGTTGATCT+GGG | 0.588059 | 7.3:-2402765 | None:intergenic |
| TTTGATTTAAGATTGTTACA+AGG | 0.590503 | 7.3:-2403491 | None:intergenic |
| GCTTGCAGCAGTGGAATCGA+AGG | 0.594762 | 7.3:+2379889 | MS.gene026044:CDS |
| TTGGAGCCGCATTACTCCGG+GGG | 0.597347 | 7.3:+2383305 | MS.gene026044:CDS |
| AAGCTTAGATTCCTCAGCAA+GGG | 0.597669 | 7.3:-2379870 | None:intergenic |
| GCGGCTCCAATGCGATGAGT+GGG | 0.599315 | 7.3:-2383292 | None:intergenic |
| TTGAAGATCACTAACAAACC+GGG | 0.601696 | 7.3:-2402994 | None:intergenic |
| AAACTCCACGGAAGCCAGGA+AGG | 0.602329 | 7.3:-2379687 | None:intergenic |
| AAACTTACCCTGGCATAGGA+AGG | 0.605512 | 7.3:-2389495 | None:intergenic |
| CTCAGCAAGGGCTTCAAGTG+AGG | 0.605993 | 7.3:-2379858 | None:intergenic |
| CAAGCTTAGATTCCTCAGCA+AGG | 0.606287 | 7.3:-2379871 | None:intergenic |
| TCAGAAGACTGAGCTTGAGG+TGG | 0.606482 | 7.3:-2404013 | None:intergenic |
| CTCACTTGAAGCCCTTGCTG+AGG | 0.608156 | 7.3:+2379859 | MS.gene026044:CDS |
| CTGGTCACTGACACAGTCGA+TGG | 0.608501 | 7.3:+2380711 | MS.gene026044:CDS |
| ATCCTTTAAGTCTCTTGCGG+GGG | 0.609691 | 7.3:+2380102 | MS.gene026044:CDS |
| GTGGCCAAGAGATGAAGTGT+TGG | 0.612713 | 7.3:+2403634 | MS.gene026044:CDS |
| AGGTGTTGTTGCAGATTCTG+TGG | 0.615804 | 7.3:+2382969 | MS.gene026044:CDS |
| ATGTCATCCTTCCTATGCCA+GGG | 0.617570 | 7.3:+2389488 | MS.gene026044:CDS |
| ATTAATCAAATTAGTGCTGG+CGG | 0.620417 | 7.3:+2380154 | MS.gene026044:CDS |
| CACCAGAATTCAATCTCACA+CGG | 0.620819 | 7.3:-2380758 | None:intergenic |
| CTTCAAGATCTTTATCAAGG+TGG | 0.622674 | 7.3:+2403011 | MS.gene026044:CDS |
| TCACATGGGACCATGTCTCA+AGG | 0.623811 | 7.3:+2402779 | MS.gene026044:CDS |
| GATTGAAAGGATGAACATGA+TGG | 0.625916 | 7.3:+2403346 | MS.gene026044:CDS |
| AATTAGAGGATAGGAGAAGG+TGG | 0.625991 | 7.3:+2403615 | MS.gene026044:CDS |
| TTCTGATAAATCCCATCGGA+CGG | 0.626859 | 7.3:+2380213 | MS.gene026044:CDS |
| CGTGTGAGATTGAATTCTGG+TGG | 0.627135 | 7.3:+2380759 | MS.gene026044:CDS |
| TAAGGAGAACAAAGATACCC+AGG | 0.627641 | 7.3:+2381687 | MS.gene026044:CDS |
| TAATTACGTACCTTGAGACA+TGG | 0.636193 | 7.3:-2402789 | None:intergenic |
| AATCCTTTAAGTCTCTTGCG+GGG | 0.637072 | 7.3:+2380101 | MS.gene026044:CDS |
| ATAATGATAATAATTTCCCC+CGG | 0.637802 | 7.3:+2402976 | MS.gene026044:CDS |
| CAGCTGGAATCGATGATCAA+CGG | 0.638993 | 7.3:-2402685 | None:intergenic |
| ATTGTCGCATAAGATGAAGA+AGG | 0.639357 | 7.3:-2399544 | None:intergenic |
| CTGCTGCAGATTCCTTAGGA+CGG | 0.641421 | 7.3:+2383004 | MS.gene026044:CDS |
| AAGATACCCAGGAAGCTTTG+GGG | 0.643057 | 7.3:+2381698 | MS.gene026044:CDS |
| TCATGGACAGATTCATCATG+TGG | 0.643774 | 7.3:-2399472 | None:intergenic |
| GTGTTACTGGAAGTTACAGG+AGG | 0.646693 | 7.3:+2399130 | MS.gene026044:CDS |
| AGATACCCAGGAAGCTTTGG+GGG | 0.654854 | 7.3:+2381699 | MS.gene026044:CDS |
| TCAGAGATTCTCTCCCACAA+AGG | 0.658578 | 7.3:-2403734 | None:intergenic |
| ATTGGAGCCGCATTACTCCG+GGG | 0.660145 | 7.3:+2383304 | MS.gene026044:CDS |
| TGAAGATCACTAACAAACCG+GGG | 0.660207 | 7.3:-2402993 | None:intergenic |
| TGTTACTGGAAGTTACAGGA+GGG | 0.664004 | 7.3:+2399131 | MS.gene026044:CDS |
| TGTGGGAGAGAATCTCTGAA+GGG | 0.668713 | 7.3:+2403738 | MS.gene026044:CDS |
| GTTTCAGCAACTAAGAATTG+GGG | 0.674354 | 7.3:-2383579 | None:intergenic |
| CGGATTCTGATAAATCCCAT+CGG | 0.680035 | 7.3:+2380209 | MS.gene026044:CDS |
| CCCAGATCAACTCATCACAT+GGG | 0.681423 | 7.3:+2402765 | MS.gene026044:CDS |
| CATTACTGTAGGCACAACAA+GGG | 0.692959 | 7.3:-2403588 | None:intergenic |
| TCTGGTGGATCCAACAACAA+CGG | 0.703810 | 7.3:+2380774 | MS.gene026044:CDS |
| GATACAAGAGAAGTGCAAAG+AGG | 0.707168 | 7.3:+2403774 | MS.gene026044:CDS |
| TGGAGCCGCATTACTCCGGG+GGG | 0.716731 | 7.3:+2383306 | MS.gene026044:CDS |
| AGTCTTCTGATTCTCCAATG+GGG | 0.718372 | 7.3:+2404026 | MS.gene026044:CDS |
| GAAGATCACTAACAAACCGG+GGG | 0.720209 | 7.3:-2402992 | None:intergenic |
| CTGGAATCGATGATCAACGG+TGG | 0.722514 | 7.3:-2402682 | None:intergenic |
| AGAAGAAGAAGAATATCCTG+TGG | 0.722719 | 7.3:-2403438 | None:intergenic |
| GAACAACGCAGCAAGTACAA+GGG | 0.728444 | 7.3:+2384650 | MS.gene026044:CDS |
| ACACTGTGATGATGATGACA+AGG | 0.735096 | 7.3:+2403130 | MS.gene026044:CDS |
| CCTGAATGTGATGATGACGT+CGG | 0.787939 | 7.3:+2384951 | MS.gene026044:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 2379637 | 2404051 | 2379637 | ID=MS.gene026044 |
| chr7.3 | mRNA | 2379637 | 2404051 | 2379637 | ID=MS.gene026044.t1;Parent=MS.gene026044 |
| chr7.3 | exon | 2379637 | 2379719 | 2379637 | ID=MS.gene026044.t1.exon1;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2379637 | 2379719 | 2379637 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2379802 | 2379910 | 2379802 | ID=MS.gene026044.t1.exon2;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2379802 | 2379910 | 2379802 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2380034 | 2380234 | 2380034 | ID=MS.gene026044.t1.exon3;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2380034 | 2380234 | 2380034 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2380675 | 2380889 | 2380675 | ID=MS.gene026044.t1.exon4;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2380675 | 2380889 | 2380675 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2381675 | 2381747 | 2381675 | ID=MS.gene026044.t1.exon5;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2381675 | 2381747 | 2381675 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2382426 | 2382482 | 2382426 | ID=MS.gene026044.t1.exon6;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2382426 | 2382482 | 2382426 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2382607 | 2382686 | 2382607 | ID=MS.gene026044.t1.exon7;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2382607 | 2382686 | 2382607 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2382773 | 2382835 | 2382773 | ID=MS.gene026044.t1.exon8;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2382773 | 2382835 | 2382773 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2382969 | 2383056 | 2382969 | ID=MS.gene026044.t1.exon9;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2382969 | 2383056 | 2382969 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2383271 | 2383342 | 2383271 | ID=MS.gene026044.t1.exon10;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2383271 | 2383342 | 2383271 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2383525 | 2383608 | 2383525 | ID=MS.gene026044.t1.exon11;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2383525 | 2383608 | 2383525 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2383760 | 2383833 | 2383760 | ID=MS.gene026044.t1.exon12;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2383760 | 2383833 | 2383760 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2384620 | 2384684 | 2384620 | ID=MS.gene026044.t1.exon13;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2384620 | 2384684 | 2384620 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2384874 | 2385046 | 2384874 | ID=MS.gene026044.t1.exon14;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2384874 | 2385046 | 2384874 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2389442 | 2389509 | 2389442 | ID=MS.gene026044.t1.exon15;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2389442 | 2389509 | 2389442 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2389629 | 2389689 | 2389629 | ID=MS.gene026044.t1.exon16;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2389629 | 2389689 | 2389629 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2398954 | 2398991 | 2398954 | ID=MS.gene026044.t1.exon17;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2398954 | 2398991 | 2398954 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2399113 | 2399181 | 2399113 | ID=MS.gene026044.t1.exon18;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2399113 | 2399181 | 2399113 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2399291 | 2399600 | 2399291 | ID=MS.gene026044.t1.exon19;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2399291 | 2399600 | 2399291 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2402670 | 2402800 | 2402670 | ID=MS.gene026044.t1.exon20;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2402670 | 2402800 | 2402670 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| chr7.3 | exon | 2402881 | 2404051 | 2402881 | ID=MS.gene026044.t1.exon21;Parent=MS.gene026044.t1 |
| chr7.3 | CDS | 2402881 | 2404051 | 2402881 | ID=cds.MS.gene026044.t1;Parent=MS.gene026044.t1 |
| Gene Sequence |
| Protein sequence |
