Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21679.t1 | XP_003610966.1 | 97.1 | 379 | 10 | 1 | 1 | 379 | 1 | 378 | 7.00E-184 | 653.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21679.t1 | Q99J36 | 32.5 | 197 | 123 | 4 | 184 | 377 | 81 | 270 | 6.5e-21 | 103.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21679.t1 | G7K999 | 97.1 | 379 | 10 | 1 | 1 | 379 | 1 | 378 | 5.0e-184 | 653.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21679.t1 | MTR_5g009010 | 96.570 | 379 | 12 | 1 | 1 | 379 | 1 | 378 | 0.0 | 741 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21679.t1 | AT5G12410 | 54.762 | 378 | 148 | 6 | 12 | 377 | 9 | 375 | 5.75e-132 | 383 |
Find 83 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGGCAATTTCAACTATTA+TGG | 0.192469 | 5.2:-2763262 | None:intergenic |
| CGCTTTGCCAAGCTTGAATC+AGG | 0.273895 | 5.2:+2762483 | MS.gene21679:CDS |
| GGCAGACTGTTTGCTTGATC+GGG | 0.303852 | 5.2:+2763868 | MS.gene21679:intron |
| AAATGCGCCAACAAGTGATT+TGG | 0.316855 | 5.2:+2761526 | MS.gene21679:CDS |
| TCAGATCCTCCTAAAATTGA+TGG | 0.322675 | 5.2:+2761386 | MS.gene21679:CDS |
| CCCGATACTGCTGCCGCCGC+CGG | 0.331092 | 5.2:+2759969 | MS.gene21679:CDS |
| ACCGGCGGCGGCAGCAGTAT+CGG | 0.364568 | 5.2:-2759970 | None:intergenic |
| ATCCGGTTAACGATCTCGTT+GGG | 0.365210 | 5.2:-2762558 | None:intergenic |
| CCGGCGGCGGCAGCAGTATC+GGG | 0.387466 | 5.2:-2759969 | None:intergenic |
| GCATGCTCAGGCTGGGGATA+AGG | 0.395820 | 5.2:+2761412 | MS.gene21679:CDS |
| ATCTTCAATTAACTTATCAA+TGG | 0.396744 | 5.2:-2761573 | None:intergenic |
| CTCCTCATCATCGTCACTAC+TGG | 0.397151 | 5.2:-2761249 | None:intergenic |
| ATGGCTAGTATTGTCGCTAT+TGG | 0.397862 | 5.2:-2761342 | None:intergenic |
| CTATTGGAAACATCCAGTTT+AGG | 0.400292 | 5.2:-2761326 | None:intergenic |
| TATGAAGCCCGGGCAAATAC+TGG | 0.408924 | 5.2:+2763156 | MS.gene21679:CDS |
| TGGCAGACTGTTTGCTTGAT+CGG | 0.410558 | 5.2:+2763867 | MS.gene21679:intron |
| TGACGATGATGAGGAGGAAG+AGG | 0.418381 | 5.2:+2761256 | MS.gene21679:CDS |
| TTTCACCTGTTTCATTGTCA+TGG | 0.428481 | 5.2:-2761361 | None:intergenic |
| AGTTGTCCAAGTACAATATT+AGG | 0.433079 | 5.2:+2763910 | MS.gene21679:CDS |
| AATGCGCCAACAAGTGATTT+GGG | 0.444791 | 5.2:+2761527 | MS.gene21679:CDS |
| CCATAATAGTTGAAATTGCC+AGG | 0.445233 | 5.2:+2763262 | MS.gene21679:CDS |
| ATGGTTTGCATGCTCAGGCT+GGG | 0.458167 | 5.2:+2761405 | MS.gene21679:CDS |
| GAATACGAACCCTTCTTCAC+TGG | 0.458548 | 5.2:-2760121 | None:intergenic |
| GATGGTTTGCATGCTCAGGC+TGG | 0.459066 | 5.2:+2761404 | MS.gene21679:CDS |
| ACTAGCCATGACAATGAAAC+AGG | 0.461113 | 5.2:+2761356 | MS.gene21679:CDS |
| TCTGCAGAAACCAGTGAAGA+AGG | 0.464908 | 5.2:+2760111 | MS.gene21679:intron |
| TCGGACAACTTTGTCACACT+TGG | 0.474464 | 5.2:-2761182 | None:intergenic |
| GCCAGAAGGAAGTGAGGAAA+AGG | 0.476120 | 5.2:+2761292 | MS.gene21679:CDS |
| ATTCAAATGCGGAAGAAAGA+TGG | 0.476734 | 5.2:+2762525 | MS.gene21679:CDS |
| TTACTGAGGTCAACTTTATG+AGG | 0.482532 | 5.2:-2763228 | None:intergenic |
| AAGGCTACTAGTGATGATAA+AGG | 0.486381 | 5.2:+2761431 | MS.gene21679:CDS |
| AATTGATGGTTTGCATGCTC+AGG | 0.494441 | 5.2:+2761400 | MS.gene21679:CDS |
| TAACTGCCTAATATTGTACT+TGG | 0.498069 | 5.2:-2763916 | None:intergenic |
| GCCCCAACGAGATCGTTAAC+CGG | 0.500331 | 5.2:+2762556 | MS.gene21679:CDS |
| AAAAGCAATCCAGCCTCTTG+TGG | 0.500551 | 5.2:+2762756 | MS.gene21679:CDS |
| AGTACTGCTCCACAAGAGGC+TGG | 0.501229 | 5.2:-2762765 | None:intergenic |
| AGGTCAACTTTATGAGGTGC+AGG | 0.509742 | 5.2:-2763222 | None:intergenic |
| TGTCAACACCAGTATTTGCC+CGG | 0.510087 | 5.2:-2763164 | None:intergenic |
| GATACTGCTGCCGCCGCCGG+TGG | 0.511273 | 5.2:+2759972 | MS.gene21679:CDS |
| TGAGAGCTTCGCGAGTGGCT+TGG | 0.520060 | 5.2:-2760198 | None:intergenic |
| TCATTACACCCTGGTGTGCA+AGG | 0.521238 | 5.2:+2760142 | MS.gene21679:CDS |
| TTGCAGCACTCTTTCACAGC+CGG | 0.524969 | 5.2:-2761500 | None:intergenic |
| ATGCTGCTGATGTCACTATC+CGG | 0.531589 | 5.2:-2762575 | None:intergenic |
| AGAACTGAGAGACAAGAGTA+AGG | 0.536916 | 5.2:+2761604 | MS.gene21679:CDS |
| GGGCAAATACTGGTGTTGAC+AGG | 0.537044 | 5.2:+2763166 | MS.gene21679:CDS |
| TATCCGGTTAACGATCTCGT+TGG | 0.539404 | 5.2:-2762559 | None:intergenic |
| TGGTTTGCATGCTCAGGCTG+GGG | 0.542396 | 5.2:+2761406 | MS.gene21679:CDS |
| AAAGGCTCATGCTTTACTTG+AGG | 0.548357 | 5.2:-2763940 | None:intergenic |
| TGCTGTGATGTATGAAGCCC+GGG | 0.549023 | 5.2:+2763146 | MS.gene21679:CDS |
| TGATGAGGAGGAAGAGGAGA+AGG | 0.556136 | 5.2:+2761262 | MS.gene21679:CDS |
| CTGCAGAAACCAGTGAAGAA+GGG | 0.559458 | 5.2:+2760112 | MS.gene21679:intron |
| ATTACAACCTGATTCAAGCT+TGG | 0.559965 | 5.2:-2762490 | None:intergenic |
| TTGCTGTGATGTATGAAGCC+CGG | 0.561353 | 5.2:+2763145 | MS.gene21679:CDS |
| CAGCACTCTTTCACAGCCGG+TGG | 0.561979 | 5.2:-2761497 | None:intergenic |
| CGGGGTCATTGAGAAGTACA+AGG | 0.563046 | 5.2:+2763887 | MS.gene21679:CDS |
| AGTCTCATGTTATGCTTCAA+AGG | 0.565719 | 5.2:+2762723 | MS.gene21679:CDS |
| ATGCACAGTATTACCTTCTG+TGG | 0.570175 | 5.2:-2762808 | None:intergenic |
| GTCAACACCAGTATTTGCCC+GGG | 0.570407 | 5.2:-2763163 | None:intergenic |
| TGACATCAGCAGCATCGACT+AGG | 0.577556 | 5.2:+2762583 | MS.gene21679:CDS |
| TCCGGTTAACGATCTCGTTG+GGG | 0.579623 | 5.2:-2762557 | None:intergenic |
| AAGCTTGAATCAGGTTGTAA+TGG | 0.585307 | 5.2:+2762492 | MS.gene21679:CDS |
| GAGAAGGCGCAAGTGCCAGA+AGG | 0.586468 | 5.2:+2761278 | MS.gene21679:CDS |
| GCAGACTGTTTGCTTGATCG+GGG | 0.589916 | 5.2:+2763869 | MS.gene21679:intron |
| AAAGATAGCTGATGAGCCAC+CGG | 0.594350 | 5.2:+2761481 | MS.gene21679:CDS |
| TCTCTTCTTTCCACCGGCGG+CGG | 0.600339 | 5.2:-2759982 | None:intergenic |
| GTGTGGTATTTATTCAAATG+CGG | 0.602556 | 5.2:+2762514 | MS.gene21679:CDS |
| AAATACTGGTGTTGACAGGA+TGG | 0.603355 | 5.2:+2763170 | MS.gene21679:CDS |
| TTCCAGTAGTGACGATGATG+AGG | 0.604964 | 5.2:+2761247 | MS.gene21679:CDS |
| AGAAGGAAGTGAGGAAAAGG+AGG | 0.606127 | 5.2:+2761295 | MS.gene21679:CDS |
| CATAATAGTTGAAATTGCCA+GGG | 0.614211 | 5.2:+2763263 | MS.gene21679:CDS |
| TGTGGAGCAGTACTTTCCCG+TGG | 0.617448 | 5.2:+2762774 | MS.gene21679:CDS |
| GCATAACATGAGACTTCGAT+AGG | 0.618502 | 5.2:-2762715 | None:intergenic |
| GGAAAGTACTGCTCCACAAG+AGG | 0.628857 | 5.2:-2762769 | None:intergenic |
| CAGTAGTGACGATGATGAGG+AGG | 0.634098 | 5.2:+2761250 | MS.gene21679:CDS |
| GAAGGAGAAGATACGTTGTG+AGG | 0.634745 | 5.2:-2760017 | None:intergenic |
| GGAAACTCAAAATCCACAGA+AGG | 0.636552 | 5.2:+2762795 | MS.gene21679:CDS |
| GATGGAAATAATTGATGCTG+TGG | 0.636669 | 5.2:+2763188 | MS.gene21679:CDS |
| CTCATGTTATGCTTCAAAGG+AGG | 0.639066 | 5.2:+2762726 | MS.gene21679:CDS |
| AATAGTGAGAGCTTCGCGAG+TGG | 0.646111 | 5.2:-2760203 | None:intergenic |
| GCAAGTGCCAGAAGGAAGTG+AGG | 0.646484 | 5.2:+2761286 | MS.gene21679:CDS |
| CGACTAGGAAACATATGTCG+AGG | 0.650767 | 5.2:+2762598 | MS.gene21679:CDS |
| GGTTCGTATTCATTACACCC+TGG | 0.684951 | 5.2:+2760133 | MS.gene21679:CDS |
| TGAATCAGGTTGTAATGGTG+TGG | 0.685447 | 5.2:+2762497 | MS.gene21679:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAACTTAG+AGG | + | chr5.2:2760609-2760628 | MS.gene21679:intron | 10.0% |
| !!! | GATTTTTTTTTAATAATTTC+TGG | + | chr5.2:2761704-2761723 | MS.gene21679:intron | 10.0% |
| !!! | TATATTTATCATTTTTTTCT+CGG | + | chr5.2:2762252-2762271 | MS.gene21679:intron | 10.0% |
| !!! | TTTTTTATTTAAAGGTTTAT+CGG | - | chr5.2:2761204-2761223 | None:intergenic | 10.0% |
| !! | AAAAAAATCATATGATATGT+TGG | - | chr5.2:2761693-2761712 | None:intergenic | 15.0% |
| !! | AAAAAATAATCTAATACATG+CGG | - | chr5.2:2762844-2762863 | None:intergenic | 15.0% |
| !! | AAAAAATTGATACACATTAA+TGG | - | chr5.2:2761049-2761068 | None:intergenic | 15.0% |
| !! | AAAAATTGATACACATTAAT+GGG | - | chr5.2:2761048-2761067 | None:intergenic | 15.0% |
| !! | ACTTTAAGCTATAAATAAAT+TGG | - | chr5.2:2760447-2760466 | None:intergenic | 15.0% |
| !! | ATATAATCTTGAATATGATA+TGG | - | chr5.2:2761864-2761883 | None:intergenic | 15.0% |
| !! | ATTGAATCTTATTAAAGTAA+AGG | - | chr5.2:2760980-2760999 | None:intergenic | 15.0% |
| !! | TAAATTAGATTTAACATGTT+TGG | - | chr5.2:2760513-2760532 | None:intergenic | 15.0% |
| !!! | AACGTGATTTTTTTATTTAA+AGG | - | chr5.2:2761212-2761231 | None:intergenic | 15.0% |
| !!! | AATTTCAATAATTTTTTCGA+TGG | - | chr5.2:2762945-2762964 | None:intergenic | 15.0% |
| !!! | GATTTTGAATTAATTGATTA+TGG | + | chr5.2:2760316-2760335 | MS.gene21679:intron | 15.0% |
| !!! | TGTATAATTTTTTATCAGTT+TGG | + | chr5.2:2763818-2763837 | MS.gene21679:intron | 15.0% |
| !! | AAGGAATAAAGAGATATATA+CGG | - | chr5.2:2761976-2761995 | None:intergenic | 20.0% |
| !! | AATAAAAATGAGCAAATTCA+TGG | - | chr5.2:2760279-2760298 | None:intergenic | 20.0% |
| !! | ACTAACAATAGAAACAATAA+AGG | - | chr5.2:2761075-2761094 | None:intergenic | 20.0% |
| !! | ATAATTTCACACAAAACATT+GGG | - | chr5.2:2763475-2763494 | None:intergenic | 20.0% |
| !! | ATCTTCAATTAACTTATCAA+TGG | - | chr5.2:2761576-2761595 | None:intergenic | 20.0% |
| !! | CAAGAAAAAACTTCAAAAAA+TGG | - | chr5.2:2763370-2763389 | None:intergenic | 20.0% |
| !! | CATAGATTTATGTATGTTTA+CGG | + | chr5.2:2760555-2760574 | MS.gene21679:intron | 20.0% |
| !! | GAATAGAATAATATACAGAA+TGG | - | chr5.2:2761646-2761665 | None:intergenic | 20.0% |
| !! | TAAACATACATAAATCTATG+AGG | - | chr5.2:2760555-2760574 | None:intergenic | 20.0% |
| !! | TTTAATTATGAAATCCCTAT+TGG | + | chr5.2:2763520-2763539 | MS.gene21679:intron | 20.0% |
| !! | TTTATCAATTTATACAAGTG+AGG | + | chr5.2:2761020-2761039 | MS.gene21679:intron | 20.0% |
| !!! | AAACATACTTTTTGACAAAT+AGG | - | chr5.2:2763553-2763572 | None:intergenic | 20.0% |
| ! | AAACTACACATACAAAATAC+TGG | - | chr5.2:2763127-2763146 | None:intergenic | 25.0% |
| ! | AAAGGATACTTATACTTCAA+GGG | + | chr5.2:2762148-2762167 | MS.gene21679:intron | 25.0% |
| ! | AAATAGGTTTCTTTCCAATA+GGG | - | chr5.2:2763537-2763556 | None:intergenic | 25.0% |
| ! | AAGATTGAAATTGAAAGAAG+AGG | - | chr5.2:2760049-2760068 | None:intergenic | 25.0% |
| ! | AGAAGTTGAGTTTAACTAAT+AGG | + | chr5.2:2760633-2760652 | MS.gene21679:intron | 25.0% |
| ! | AGTGACAACAAATTATCTAA+TGG | - | chr5.2:2762997-2763016 | None:intergenic | 25.0% |
| ! | ATAATCTAGCATAGAAAACA+AGG | - | chr5.2:2761995-2762014 | None:intergenic | 25.0% |
| ! | CAATACAGTATATTCAAGAT+AGG | + | chr5.2:2761785-2761804 | MS.gene21679:intron | 25.0% |
| ! | CATAATTTCACACAAAACAT+TGG | - | chr5.2:2763476-2763495 | None:intergenic | 25.0% |
| ! | CATTGAAACATAAGAAAACA+AGG | - | chr5.2:2761947-2761966 | None:intergenic | 25.0% |
| ! | CTTAAAGTTAGAATCAATTC+TGG | + | chr5.2:2760459-2760478 | MS.gene21679:intron | 25.0% |
| ! | GTTTATCATATTCTCTTTGA+TGG | + | chr5.2:2760729-2760748 | MS.gene21679:intron | 25.0% |
| ! | TAAAGGATACTTATACTTCA+AGG | + | chr5.2:2762147-2762166 | MS.gene21679:intron | 25.0% |
| !! | TGTGAAATTATGCATTTTCA+TGG | + | chr5.2:2763484-2763503 | MS.gene21679:intron | 25.0% |
| !! | TTGAAATTTTGAATACACTG+CGG | + | chr5.2:2760813-2760832 | MS.gene21679:intron | 25.0% |
| !!! | CTTTGTTGATTTCTTAGTAA+AGG | + | chr5.2:2762130-2762149 | MS.gene21679:intron | 25.0% |
| !!! | TCAACTATTATGGTTTTATC+AGG | - | chr5.2:2763255-2763274 | None:intergenic | 25.0% |
| !!! | TCTCAAATATTTGCTTTTGA+TGG | + | chr5.2:2762195-2762214 | MS.gene21679:intron | 25.0% |
| !!! | TGTTTTGTTATACCATCTTT+CGG | + | chr5.2:2763741-2763760 | MS.gene21679:intron | 25.0% |
| AAAGTTAGAATCAATTCTGG+AGG | + | chr5.2:2760462-2760481 | MS.gene21679:intron | 30.0% | |
| AAATTGAAAGAAGAGGTGAA+GGG | - | chr5.2:2760042-2760061 | None:intergenic | 30.0% | |
| AACAACAATTGTGTCTTGTA+AGG | - | chr5.2:2763050-2763069 | None:intergenic | 30.0% | |
| ACTGTGTTAGCAATTTAAGT+TGG | - | chr5.2:2763661-2763680 | None:intergenic | 30.0% | |
| AGTTGTCCAAGTACAATATT+AGG | + | chr5.2:2763910-2763929 | MS.gene21679:CDS | 30.0% | |
| ATACCATAAAGTATGCAGAA+AGG | + | chr5.2:2760771-2760790 | MS.gene21679:intron | 30.0% | |
| ATGGTATAACAAAACAAGTC+AGG | - | chr5.2:2763737-2763756 | None:intergenic | 30.0% | |
| ATGTTTACGGAGAAGTTAAA+TGG | + | chr5.2:2760568-2760587 | MS.gene21679:intron | 30.0% | |
| CAAATAGGTTTCTTTCCAAT+AGG | - | chr5.2:2763538-2763557 | None:intergenic | 30.0% | |
| CATAATAGTTGAAATTGCCA+GGG | + | chr5.2:2763263-2763282 | MS.gene21679:CDS | 30.0% | |
| CTTAAATTGCTAACACAGTT+AGG | + | chr5.2:2763662-2763681 | MS.gene21679:intron | 30.0% | |
| GAAAGCGGTTATAAGAAAAA+AGG | - | chr5.2:2760257-2760276 | None:intergenic | 30.0% | |
| GAAATGTGAAACAAATCCTT+AGG | - | chr5.2:2762392-2762411 | None:intergenic | 30.0% | |
| GTGTAGTTTAAGTGTTAGTT+TGG | + | chr5.2:2760875-2760894 | MS.gene21679:intron | 30.0% | |
| GTGTGGTATTTATTCAAATG+CGG | + | chr5.2:2762514-2762533 | MS.gene21679:CDS | 30.0% | |
| TAACTGCCTAATATTGTACT+TGG | - | chr5.2:2763919-2763938 | None:intergenic | 30.0% | |
| TCATATTCTCTTTGATGGAA+AGG | + | chr5.2:2760734-2760753 | MS.gene21679:intron | 30.0% | |
| TGAAAGGAATGGAAATAATC+TGG | - | chr5.2:2763398-2763417 | None:intergenic | 30.0% | |
| TGCAAGACAAATTGAAACAA+TGG | - | chr5.2:2761131-2761150 | None:intergenic | 30.0% | |
| TGGCATTAACTTAAAGATAG+CGG | + | chr5.2:2760895-2760914 | MS.gene21679:intron | 30.0% | |
| TGGTATAACAAAACAAGTCA+GGG | - | chr5.2:2763736-2763755 | None:intergenic | 30.0% | |
| TGTTTACGGAGAAGTTAAAT+GGG | + | chr5.2:2760569-2760588 | MS.gene21679:intron | 30.0% | |
| TTTGTTAATTAAGTAGTGGC+AGG | + | chr5.2:2762220-2762239 | MS.gene21679:intron | 30.0% | |
| ! | AGAACGATTTTGAACTCTAA+AGG | - | chr5.2:2762096-2762115 | None:intergenic | 30.0% |
| ! | CATACTATATTTTCCATCTC+AGG | - | chr5.2:2762057-2762076 | None:intergenic | 30.0% |
| ! | GGCTTTTGTTAATTAAGTAG+TGG | + | chr5.2:2762216-2762235 | MS.gene21679:intron | 30.0% |
| ! | TGATTTGGGTGAAAAAAAAG+TGG | + | chr5.2:2761541-2761560 | MS.gene21679:CDS | 30.0% |
| ! | TTTCCTTTTCATTTGTGAGT+AGG | + | chr5.2:2762408-2762427 | MS.gene21679:intron | 30.0% |
| ! | TTTTACGAAGAGCTAATTGA+TGG | + | chr5.2:2761152-2761171 | MS.gene21679:CDS | 30.0% |
| !! | GTAATAGCAGTTGATTTGAA+AGG | - | chr5.2:2763414-2763433 | None:intergenic | 30.0% |
| !!! | CTCGGAAGATTTTGATTTTT+GGG | + | chr5.2:2762270-2762289 | MS.gene21679:intron | 30.0% |
| !!! | CTTCAGCATTTTAGTTTATG+TGG | - | chr5.2:2763688-2763707 | None:intergenic | 30.0% |
| !!! | TCTCGGAAGATTTTGATTTT+TGG | + | chr5.2:2762269-2762288 | MS.gene21679:intron | 30.0% |
| AAAGAAGGACAAGTGAAAGA+AGG | - | chr5.2:2762028-2762047 | None:intergenic | 35.0% | |
| AAGGCTACTAGTGATGATAA+AGG | + | chr5.2:2761431-2761450 | MS.gene21679:CDS | 35.0% | |
| AAGTTATACTCCAATGCACA+AGG | - | chr5.2:2762346-2762365 | None:intergenic | 35.0% | |
| ACAAGTGAAAGAAGGAAACA+TGG | - | chr5.2:2762020-2762039 | None:intergenic | 35.0% | |
| ACACCTACTCACAAATGAAA+AGG | - | chr5.2:2762414-2762433 | None:intergenic | 35.0% | |
| AGTCTCATGTTATGCTTCAA+AGG | + | chr5.2:2762723-2762742 | MS.gene21679:CDS | 35.0% | |
| ATGAGCAAATTCATGGAAAG+CGG | - | chr5.2:2760272-2760291 | None:intergenic | 35.0% | |
| ATTACAACCTGATTCAAGCT+TGG | - | chr5.2:2762493-2762512 | None:intergenic | 35.0% | |
| ATTCAAATGCGGAAGAAAGA+TGG | + | chr5.2:2762525-2762544 | MS.gene21679:CDS | 35.0% | |
| ATTTCACACAAAACATTGGG+TGG | - | chr5.2:2763472-2763491 | None:intergenic | 35.0% | |
| CATCCTTTCTGCATACTTTA+TGG | - | chr5.2:2760777-2760796 | None:intergenic | 35.0% | |
| CCATAATAGTTGAAATTGCC+AGG | + | chr5.2:2763262-2763281 | MS.gene21679:CDS | 35.0% | |
| CCTGGCAATTTCAACTATTA+TGG | - | chr5.2:2763265-2763284 | None:intergenic | 35.0% | |
| CTATTGGAAACATCCAGTTT+AGG | - | chr5.2:2761329-2761348 | None:intergenic | 35.0% | |
| GAAATTGAAAGAAGAGGTGA+AGG | - | chr5.2:2760043-2760062 | None:intergenic | 35.0% | |
| GATGGAAATAATTGATGCTG+TGG | + | chr5.2:2763188-2763207 | MS.gene21679:CDS | 35.0% | |
| GCGGTTATAAGAAAAAAGGA+AGG | - | chr5.2:2760253-2760272 | None:intergenic | 35.0% | |
| GTGCATTGGAGTATAACTTT+GGG | + | chr5.2:2762347-2762366 | MS.gene21679:intron | 35.0% | |
| GTGTGTAAACTTTGTGCAAT+AGG | - | chr5.2:2762869-2762888 | None:intergenic | 35.0% | |
| TCAGATCCTCCTAAAATTGA+TGG | + | chr5.2:2761386-2761405 | MS.gene21679:CDS | 35.0% | |
| TGCATTGGAGTATAACTTTG+GGG | + | chr5.2:2762348-2762367 | MS.gene21679:intron | 35.0% | |
| TGTGCATTGGAGTATAACTT+TGG | + | chr5.2:2762346-2762365 | MS.gene21679:intron | 35.0% | |
| TTACTGAGGTCAACTTTATG+AGG | - | chr5.2:2763231-2763250 | None:intergenic | 35.0% | |
| TTCAAAAAATGGCTGCTACT+CGG | - | chr5.2:2763359-2763378 | None:intergenic | 35.0% | |
| TTTCACCTGTTTCATTGTCA+TGG | - | chr5.2:2761364-2761383 | None:intergenic | 35.0% | |
| ! | AAGCTTGAATCAGGTTGTAA+TGG | + | chr5.2:2762492-2762511 | MS.gene21679:CDS | 35.0% |
| ! | ACTAATGCATGCTGTTTGTT+TGG | + | chr5.2:2763847-2763866 | MS.gene21679:intron | 35.0% |
| ! | ACTGGTTTCTGCAGAAATTA+CGG | - | chr5.2:2760106-2760125 | None:intergenic | 35.0% |
| ! | CTCATCAGCTATCTTTTCTA+TGG | - | chr5.2:2761477-2761496 | None:intergenic | 35.0% |
| ! | GCATGCAAACCATCAATTTT+AGG | - | chr5.2:2761398-2761417 | None:intergenic | 35.0% |
| ! | GCTATCTTTTCTATGGTCTT+AGG | - | chr5.2:2761470-2761489 | None:intergenic | 35.0% |
| ! | GCTTTGCTCAAACTTTTATG+TGG | + | chr5.2:2761726-2761745 | MS.gene21679:intron | 35.0% |
| ! | TGCAAACCATCAATTTTAGG+AGG | - | chr5.2:2761395-2761414 | None:intergenic | 35.0% |
| ! | TTTTCACCCAAATCACTTGT+TGG | - | chr5.2:2761536-2761555 | None:intergenic | 35.0% |
| !! | AGCAGTTGATTTGAAAGGAA+TGG | - | chr5.2:2763409-2763428 | None:intergenic | 35.0% |
| !!! | TGGTTTTATCAGGATTACTG+AGG | - | chr5.2:2763245-2763264 | None:intergenic | 35.0% |
| AAATGCGCCAACAAGTGATT+TGG | + | chr5.2:2761526-2761545 | MS.gene21679:CDS | 40.0% | |
| AAATTCAGCCTTTCTTACCC+TGG | - | chr5.2:2763283-2763302 | None:intergenic | 40.0% | |
| AAGAAACGCTGATACATTGC+TGG | + | chr5.2:2762663-2762682 | MS.gene21679:intron | 40.0% | |
| AATGCGCCAACAAGTGATTT+GGG | + | chr5.2:2761527-2761546 | MS.gene21679:CDS | 40.0% | |
| ACTAGCCATGACAATGAAAC+AGG | + | chr5.2:2761356-2761375 | MS.gene21679:CDS | 40.0% | |
| AGAACTGAGAGACAAGAGTA+AGG | + | chr5.2:2761604-2761623 | MS.gene21679:CDS | 40.0% | |
| ATGAAAAAACCTTGCACACC+AGG | - | chr5.2:2760154-2760173 | None:intergenic | 40.0% | |
| ATGCACAGTATTACCTTCTG+TGG | - | chr5.2:2762811-2762830 | None:intergenic | 40.0% | |
| ATGGCGTGATATCAATTTGC+AGG | - | chr5.2:2761112-2761131 | None:intergenic | 40.0% | |
| ATGGCTAGTATTGTCGCTAT+TGG | - | chr5.2:2761345-2761364 | None:intergenic | 40.0% | |
| ATTGGGTGGATGATTTAGCA+GGG | - | chr5.2:2763458-2763477 | None:intergenic | 40.0% | |
| CATCTCAGGAGTCATAAAGA+AGG | - | chr5.2:2762043-2762062 | None:intergenic | 40.0% | |
| CTCATGTTATGCTTCAAAGG+AGG | + | chr5.2:2762726-2762745 | MS.gene21679:CDS | 40.0% | |
| CTTCTTTATGACTCCTGAGA+TGG | + | chr5.2:2762041-2762060 | MS.gene21679:intron | 40.0% | |
| GACTTCTTGCTTCTCTTCAA+TGG | + | chr5.2:2763609-2763628 | MS.gene21679:intron | 40.0% | |
| GCACAAGGAACTGAAGAATT+AGG | - | chr5.2:2762331-2762350 | None:intergenic | 40.0% | |
| GCATAACATGAGACTTCGAT+AGG | - | chr5.2:2762718-2762737 | None:intergenic | 40.0% | |
| GGAAACTCAAAATCCACAGA+AGG | + | chr5.2:2762795-2762814 | MS.gene21679:CDS | 40.0% | |
| TACTGCATCTACTCTTGCTT+TGG | + | chr5.2:2763573-2763592 | MS.gene21679:intron | 40.0% | |
| TCAAAAAATGGCTGCTACTC+GGG | - | chr5.2:2763358-2763377 | None:intergenic | 40.0% | |
| TGAAAAAACCTTGCACACCA+GGG | - | chr5.2:2760153-2760172 | None:intergenic | 40.0% | |
| TGAAATTGCCAGGGTAAGAA+AGG | + | chr5.2:2763272-2763291 | MS.gene21679:intron | 40.0% | |
| TGTGAAACAAATCCTTAGGC+AGG | - | chr5.2:2762388-2762407 | None:intergenic | 40.0% | |
| TTCTTCAGTTCCTTGTGCAT+TGG | + | chr5.2:2762333-2762352 | MS.gene21679:intron | 40.0% | |
| ! | AATTGATGGTTTGCATGCTC+AGG | + | chr5.2:2761400-2761419 | MS.gene21679:CDS | 40.0% |
| ! | ATACATTGCTGGCTACTTCT+AGG | + | chr5.2:2762674-2762693 | MS.gene21679:intron | 40.0% |
| ! | TAGGTGTGTGTTTTGCTAAG+AGG | + | chr5.2:2762427-2762446 | MS.gene21679:intron | 40.0% |
| ! | TGAATCAGGTTGTAATGGTG+TGG | + | chr5.2:2762497-2762516 | MS.gene21679:CDS | 40.0% |
| ! | TTTTTCATCACTTGCGATGG+TGG | + | chr5.2:2760166-2760185 | MS.gene21679:CDS | 40.0% |
| !! | AAATACTGGTGTTGACAGGA+TGG | + | chr5.2:2763170-2763189 | MS.gene21679:CDS | 40.0% |
| !!! | CTGTGGATTTTGAGTTTCCA+CGG | - | chr5.2:2762794-2762813 | None:intergenic | 40.0% |
| !!! | GGTTTTTTCATCACTTGCGA+TGG | + | chr5.2:2760163-2760182 | MS.gene21679:CDS | 40.0% |
| !!! | TGTGGATTTTGAGTTTCCAC+GGG | - | chr5.2:2762793-2762812 | None:intergenic | 40.0% |
| AAAAGCAATCCAGCCTCTTG+TGG | + | chr5.2:2762756-2762775 | MS.gene21679:CDS | 45.0% | |
| AAAGATAGCTGATGAGCCAC+CGG | + | chr5.2:2761481-2761500 | MS.gene21679:CDS | 45.0% | |
| AGAAGGAAGTGAGGAAAAGG+AGG | + | chr5.2:2761295-2761314 | MS.gene21679:CDS | 45.0% | |
| AGGTCAACTTTATGAGGTGC+AGG | - | chr5.2:2763225-2763244 | None:intergenic | 45.0% | |
| ATACACTGCGGATCTGCTTA+CGG | + | chr5.2:2760825-2760844 | MS.gene21679:intron | 45.0% | |
| ATCCGGTTAACGATCTCGTT+GGG | - | chr5.2:2762561-2762580 | None:intergenic | 45.0% | |
| ATGCTGCTGATGTCACTATC+CGG | - | chr5.2:2762578-2762597 | None:intergenic | 45.0% | |
| CATTGGGTGGATGATTTAGC+AGG | - | chr5.2:2763459-2763478 | None:intergenic | 45.0% | |
| CGACTAGGAAACATATGTCG+AGG | + | chr5.2:2762598-2762617 | MS.gene21679:CDS | 45.0% | |
| CGGGAAATACATGGCATGAT+GGG | - | chr5.2:2763339-2763358 | None:intergenic | 45.0% | |
| CTGCAGAAACCAGTGAAGAA+GGG | + | chr5.2:2760112-2760131 | MS.gene21679:intron | 45.0% | |
| CTTATCCCACTAAGTGCAGT+CGG | - | chr5.2:2761830-2761849 | None:intergenic | 45.0% | |
| GAAGGAGAAGATACGTTGTG+AGG | - | chr5.2:2760020-2760039 | None:intergenic | 45.0% | |
| GAATACGAACCCTTCTTCAC+TGG | - | chr5.2:2760124-2760143 | None:intergenic | 45.0% | |
| GAGCATTTCTCACCGAAAGA+TGG | - | chr5.2:2763756-2763775 | None:intergenic | 45.0% | |
| GGAGGACAAAAAGCCTAAAC+TGG | + | chr5.2:2761313-2761332 | MS.gene21679:CDS | 45.0% | |
| GGTTCGTATTCATTACACCC+TGG | + | chr5.2:2760133-2760152 | MS.gene21679:CDS | 45.0% | |
| TATCCGGTTAACGATCTCGT+TGG | - | chr5.2:2762562-2762581 | None:intergenic | 45.0% | |
| TCGGACAACTTTGTCACACT+TGG | - | chr5.2:2761185-2761204 | None:intergenic | 45.0% | |
| TCGGGAAATACATGGCATGA+TGG | - | chr5.2:2763340-2763359 | None:intergenic | 45.0% | |
| TCTGCAGAAACCAGTGAAGA+AGG | + | chr5.2:2760111-2760130 | MS.gene21679:intron | 45.0% | |
| TGAAAGAAGAGGTGAAGGGA+AGG | - | chr5.2:2760038-2760057 | None:intergenic | 45.0% | |
| TGGCAGACTGTTTGCTTGAT+CGG | + | chr5.2:2763867-2763886 | MS.gene21679:intron | 45.0% | |
| TGTCAACACCAGTATTTGCC+CGG | - | chr5.2:2763167-2763186 | None:intergenic | 45.0% | |
| TTCCAGTAGTGACGATGATG+AGG | + | chr5.2:2761247-2761266 | MS.gene21679:CDS | 45.0% | |
| TTGCTGTGATGTATGAAGCC+CGG | + | chr5.2:2763145-2763164 | MS.gene21679:CDS | 45.0% | |
| TTGGGTGGATGATTTAGCAG+GGG | - | chr5.2:2763457-2763476 | None:intergenic | 45.0% | |
| ! | CGATGGTAAAGCTACTTTCC+AGG | - | chr5.2:2762928-2762947 | None:intergenic | 45.0% |
| ! | GCGTTTTCTCTTCTTTCCAC+CGG | - | chr5.2:2759991-2760010 | None:intergenic | 45.0% |
| ! | TCCTTTTCCTCACTTCCTTC+TGG | - | chr5.2:2761296-2761315 | None:intergenic | 45.0% |
| ! | TTTTCTCTTCTTTCCACCGG+CGG | - | chr5.2:2759988-2760007 | None:intergenic | 45.0% |
| !! | AGTATAACTTTGGGGCACTG+GGG | + | chr5.2:2762356-2762375 | MS.gene21679:intron | 45.0% |
| !! | GAGTATAACTTTGGGGCACT+GGG | + | chr5.2:2762355-2762374 | MS.gene21679:intron | 45.0% |
| AATAGTGAGAGCTTCGCGAG+TGG | - | chr5.2:2760206-2760225 | None:intergenic | 50.0% | |
| ACTAAGTGCAGTCGGCTACA+TGG | - | chr5.2:2761822-2761841 | None:intergenic | 50.0% | |
| ATGTAGCCGACTGCACTTAG+TGG | + | chr5.2:2761821-2761840 | MS.gene21679:intron | 50.0% | |
| CAGTAGTGACGATGATGAGG+AGG | + | chr5.2:2761250-2761269 | MS.gene21679:CDS | 50.0% | |
| CGACTGCACTTAGTGGGATA+AGG | + | chr5.2:2761828-2761847 | MS.gene21679:intron | 50.0% | |
| CGCTTTGCCAAGCTTGAATC+AGG | + | chr5.2:2762483-2762502 | MS.gene21679:CDS | 50.0% | |
| CTCCTCATCATCGTCACTAC+TGG | - | chr5.2:2761252-2761271 | None:intergenic | 50.0% | |
| GCAAAGCATGAGAGCAATCC+TGG | + | chr5.2:2762907-2762926 | MS.gene21679:intron | 50.0% | |
| GCACTTAGTGGGATAAGGCT+TGG | + | chr5.2:2761833-2761852 | MS.gene21679:intron | 50.0% | |
| GCAGACTGTTTGCTTGATCG+GGG | + | chr5.2:2763869-2763888 | MS.gene21679:intron | 50.0% | |
| GCATCTACTCTTGCTTTGGC+TGG | + | chr5.2:2763577-2763596 | MS.gene21679:intron | 50.0% | |
| GCCAGAAGGAAGTGAGGAAA+AGG | + | chr5.2:2761292-2761311 | MS.gene21679:CDS | 50.0% | |
| GCGGATCTGCTTACGGAATA+TGG | + | chr5.2:2760832-2760851 | MS.gene21679:intron | 50.0% | |
| GCTGCTACTCGGGAAATACA+TGG | - | chr5.2:2763348-2763367 | None:intergenic | 50.0% | |
| GGCAGACTGTTTGCTTGATC+GGG | + | chr5.2:2763868-2763887 | MS.gene21679:intron | 50.0% | |
| GTCAACACCAGTATTTGCCC+GGG | - | chr5.2:2763166-2763185 | None:intergenic | 50.0% | |
| TATGAAGCCCGGGCAAATAC+TGG | + | chr5.2:2763156-2763175 | MS.gene21679:CDS | 50.0% | |
| TCATTACACCCTGGTGTGCA+AGG | + | chr5.2:2760142-2760161 | MS.gene21679:CDS | 50.0% | |
| TCCGGTTAACGATCTCGTTG+GGG | - | chr5.2:2762560-2762579 | None:intergenic | 50.0% | |
| TGACGATGATGAGGAGGAAG+AGG | + | chr5.2:2761256-2761275 | MS.gene21679:CDS | 50.0% | |
| TGATGAGGAGGAAGAGGAGA+AGG | + | chr5.2:2761262-2761281 | MS.gene21679:CDS | 50.0% | |
| TGCTGTGATGTATGAAGCCC+GGG | + | chr5.2:2763146-2763165 | MS.gene21679:CDS | 50.0% | |
| TGTAGCCGACTGCACTTAGT+GGG | + | chr5.2:2761822-2761841 | MS.gene21679:intron | 50.0% | |
| TTGCAGCACTCTTTCACAGC+CGG | - | chr5.2:2761503-2761522 | None:intergenic | 50.0% | |
| ! | ATGGTTTGCATGCTCAGGCT+GGG | + | chr5.2:2761405-2761424 | MS.gene21679:CDS | 50.0% |
| ! | CGGGGTCATTGAGAAGTACA+AGG | + | chr5.2:2763887-2763906 | MS.gene21679:CDS | 50.0% |
| !! | GGAAAGTACTGCTCCACAAG+AGG | - | chr5.2:2762772-2762791 | None:intergenic | 50.0% |
| !! | GGAGTATAACTTTGGGGCAC+TGG | + | chr5.2:2762354-2762373 | MS.gene21679:intron | 50.0% |
| !! | GGGCAAATACTGGTGTTGAC+AGG | + | chr5.2:2763166-2763185 | MS.gene21679:CDS | 50.0% |
| !! | TGACATCAGCAGCATCGACT+AGG | + | chr5.2:2762583-2762602 | MS.gene21679:CDS | 50.0% |
| AGTACTGCTCCACAAGAGGC+TGG | - | chr5.2:2762768-2762787 | None:intergenic | 55.0% | |
| GCAAGTGCCAGAAGGAAGTG+AGG | + | chr5.2:2761286-2761305 | MS.gene21679:CDS | 55.0% | |
| GCCCCAACGAGATCGTTAAC+CGG | + | chr5.2:2762556-2762575 | MS.gene21679:CDS | 55.0% | |
| TGTGGAGCAGTACTTTCCCG+TGG | + | chr5.2:2762774-2762793 | MS.gene21679:CDS | 55.0% | |
| ! | GATGGTTTGCATGCTCAGGC+TGG | + | chr5.2:2761404-2761423 | MS.gene21679:CDS | 55.0% |
| ! | TGGTTTGCATGCTCAGGCTG+GGG | + | chr5.2:2761406-2761425 | MS.gene21679:CDS | 55.0% |
| CAGCACTCTTTCACAGCCGG+TGG | - | chr5.2:2761500-2761519 | None:intergenic | 60.0% | |
| GCATGCTCAGGCTGGGGATA+AGG | + | chr5.2:2761412-2761431 | MS.gene21679:CDS | 60.0% | |
| TCTCTTCTTTCCACCGGCGG+CGG | - | chr5.2:2759985-2760004 | None:intergenic | 60.0% | |
| TGAGAGCTTCGCGAGTGGCT+TGG | - | chr5.2:2760201-2760220 | None:intergenic | 60.0% | |
| ! | GAGAAGGCGCAAGTGCCAGA+AGG | + | chr5.2:2761278-2761297 | MS.gene21679:CDS | 60.0% |
| !! | ACTTTGGGGCACTGGGGCTG+AGG | + | chr5.2:2762362-2762381 | MS.gene21679:intron | 65.0% |
| ACCGGCGGCGGCAGCAGTAT+CGG | - | chr5.2:2759973-2759992 | None:intergenic | 70.0% | |
| CTGGGGCTGAGGCCTGCCTA+AGG | + | chr5.2:2762373-2762392 | MS.gene21679:intron | 70.0% | |
| CCCGATACTGCTGCCGCCGC+CGG | + | chr5.2:2759969-2759988 | MS.gene21679:CDS | 75.0% | |
| CCGGCGGCGGCAGCAGTATC+GGG | - | chr5.2:2759972-2759991 | None:intergenic | 75.0% | |
| GATACTGCTGCCGCCGCCGG+TGG | + | chr5.2:2759972-2759991 | MS.gene21679:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 2759963 | 2763956 | 2759963 | ID=MS.gene21679 |
| chr5.2 | mRNA | 2759963 | 2763956 | 2759963 | ID=MS.gene21679.t1;Parent=MS.gene21679 |
| chr5.2 | exon | 2759963 | 2760025 | 2759963 | ID=MS.gene21679.t1.exon1;Parent=MS.gene21679.t1 |
| chr5.2 | CDS | 2759963 | 2760025 | 2759963 | ID=cds.MS.gene21679.t1;Parent=MS.gene21679.t1 |
| chr5.2 | exon | 2760118 | 2760234 | 2760118 | ID=MS.gene21679.t1.exon2;Parent=MS.gene21679.t1 |
| chr5.2 | CDS | 2760118 | 2760234 | 2760118 | ID=cds.MS.gene21679.t1;Parent=MS.gene21679.t1 |
| chr5.2 | exon | 2761152 | 2761625 | 2761152 | ID=MS.gene21679.t1.exon3;Parent=MS.gene21679.t1 |
| chr5.2 | CDS | 2761152 | 2761625 | 2761152 | ID=cds.MS.gene21679.t1;Parent=MS.gene21679.t1 |
| chr5.2 | exon | 2762480 | 2762619 | 2762480 | ID=MS.gene21679.t1.exon4;Parent=MS.gene21679.t1 |
| chr5.2 | CDS | 2762480 | 2762619 | 2762480 | ID=cds.MS.gene21679.t1;Parent=MS.gene21679.t1 |
| chr5.2 | exon | 2762696 | 2762816 | 2762696 | ID=MS.gene21679.t1.exon5;Parent=MS.gene21679.t1 |
| chr5.2 | CDS | 2762696 | 2762816 | 2762696 | ID=cds.MS.gene21679.t1;Parent=MS.gene21679.t1 |
| chr5.2 | exon | 2763144 | 2763284 | 2763144 | ID=MS.gene21679.t1.exon6;Parent=MS.gene21679.t1 |
| chr5.2 | CDS | 2763144 | 2763284 | 2763144 | ID=cds.MS.gene21679.t1;Parent=MS.gene21679.t1 |
| chr5.2 | exon | 2763873 | 2763956 | 2763873 | ID=MS.gene21679.t1.exon7;Parent=MS.gene21679.t1 |
| chr5.2 | CDS | 2763873 | 2763956 | 2763873 | ID=cds.MS.gene21679.t1;Parent=MS.gene21679.t1 |
| Gene Sequence |
| Protein sequence |