Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42882.t1 | XP_003623387.1 | 96.8 | 838 | 24 | 1 | 1 | 835 | 1 | 838 | 0.00E+00 | 1327.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42882.t1 | Q6DRN3 | 31.6 | 586 | 318 | 15 | 193 | 748 | 214 | 746 | 2.4e-60 | 235.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42882.t1 | G7KTA4 | 96.8 | 838 | 24 | 1 | 1 | 835 | 1 | 838 | 0.0e+00 | 1327.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene42882 | 0.808583 | 2.88E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene42882 | 0.800258 | 1.57E-48 | -1.69E-46 |
| MS.gene049824 | MS.gene42882 | 0.803533 | 3.33E-49 | -1.69E-46 |
| MS.gene050885 | MS.gene42882 | 0.844238 | 8.56E-59 | -1.69E-46 |
| MS.gene052717 | MS.gene42882 | 0.871882 | 4.87E-67 | -1.69E-46 |
| MS.gene053007 | MS.gene42882 | 0.848127 | 7.47E-60 | -1.69E-46 |
| MS.gene053122 | MS.gene42882 | 0.855113 | 7.84E-62 | -1.69E-46 |
| MS.gene053226 | MS.gene42882 | 0.808458 | 3.07E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene42882 | 0.810802 | 9.62E-51 | -1.69E-46 |
| MS.gene056403 | MS.gene42882 | 0.846109 | 2.67E-59 | -1.69E-46 |
| MS.gene056529 | MS.gene42882 | 0.801894 | 7.26E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene42882 | 0.848862 | 4.67E-60 | -1.69E-46 |
| MS.gene05689 | MS.gene42882 | 0.889408 | 2.49E-73 | -1.69E-46 |
| MS.gene05985 | MS.gene42882 | -0.80113 | 1.04E-48 | -1.69E-46 |
| MS.gene059901 | MS.gene42882 | -0.828369 | 9.34E-55 | -1.69E-46 |
| MS.gene059935 | MS.gene42882 | 0.86469 | 1.01E-64 | -1.69E-46 |
| MS.gene060830 | MS.gene42882 | 0.836819 | 7.48E-57 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42882.t1 | MTR_7g070240 | 97.494 | 838 | 18 | 1 | 1 | 835 | 1 | 838 | 0.0 | 1670 |
| MS.gene42882.t1 | MTR_7g070240 | 96.914 | 648 | 17 | 1 | 1 | 645 | 1 | 648 | 0.0 | 1284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42882.t1 | AT1G79150 | 55.583 | 824 | 329 | 13 | 1 | 810 | 1 | 801 | 0.0 | 865 |
Find 190 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCGGCGGAAGAAGGATTT+TGG | 0.173668 | 7.2:+33116354 | None:intergenic |
| TCTTTGCTTGGACCATTTAC+TGG | 0.183655 | 7.2:+33115193 | None:intergenic |
| CCTGATTGACCTTGATTTCC+TGG | 0.201655 | 7.2:-33109848 | MS.gene42882:CDS |
| AAATTTAAAGACAAGAAATT+TGG | 0.239380 | 7.2:-33111343 | MS.gene42882:CDS |
| AGCTAGTAAAGGAGAGGATT+TGG | 0.248449 | 7.2:+33107592 | None:intergenic |
| TTTGTTCAAAACTTAGTTCT+TGG | 0.255299 | 7.2:+33107549 | None:intergenic |
| TCAGATACAGTCAGACATTT+AGG | 0.262035 | 7.2:+33109763 | None:intergenic |
| ATCCTTCAGAAATTTAATAT+TGG | 0.266075 | 7.2:+33113373 | None:intergenic |
| TGCTTCCTTGATTTCTTCCT+TGG | 0.288923 | 7.2:-33116254 | MS.gene42882:CDS |
| TATTAAATTTCTGAAGGATT+TGG | 0.293005 | 7.2:-33113369 | MS.gene42882:CDS |
| TCACCTTATGGCCTCATTAC+TGG | 0.303949 | 7.2:+33112630 | None:intergenic |
| TGCCCTTGCCTCGGTACTTT+GGG | 0.304884 | 7.2:-33107711 | MS.gene42882:CDS |
| CGCTGCATTTATAAAACGTT+TGG | 0.305579 | 7.2:-33109048 | MS.gene42882:CDS |
| CTCTCCTTTACTAGCTTTCA+AGG | 0.311272 | 7.2:-33107585 | MS.gene42882:CDS |
| GAGGATGACAATGAAGAAAA+AGG | 0.313039 | 7.2:-33115160 | MS.gene42882:CDS |
| CTCTGTTTCTGGCACAATTC+CGG | 0.317238 | 7.2:-33108780 | MS.gene42882:intron |
| ACGCGGACGGCACCAGTAAA+TGG | 0.320448 | 7.2:-33115205 | MS.gene42882:CDS |
| GCAAGGGCACCGCTTAAATT+AGG | 0.328915 | 7.2:+33107725 | None:intergenic |
| GTGCCCTTGCCTCGGTACTT+TGG | 0.335238 | 7.2:-33107712 | MS.gene42882:CDS |
| ATAATAGACTTGTCCATCTA+AGG | 0.337068 | 7.2:+33115343 | None:intergenic |
| TTCCTTTAGCCTGGATGTTA+TGG | 0.340824 | 7.2:-33111120 | MS.gene42882:CDS |
| TGAGCAACGACGCATGAAAA+AGG | 0.342698 | 7.2:-33115432 | MS.gene42882:CDS |
| TCTCCACTTTCCTCTTTGCT+TGG | 0.345526 | 7.2:+33115181 | None:intergenic |
| AACAGAAGAAACAGGTTTGC+AGG | 0.348092 | 7.2:-33115396 | MS.gene42882:CDS |
| TATCATACCTCAATGGAATC+AGG | 0.348420 | 7.2:+33111709 | None:intergenic |
| AAATTAGGATCAGTTGAATA+TGG | 0.350567 | 7.2:+33107740 | None:intergenic |
| AGTGCCCCAGGGTTTGCTTC+AGG | 0.354543 | 7.2:+33109943 | None:intergenic |
| AGCACCACAGTCTACAGTTT+TGG | 0.359811 | 7.2:-33115035 | MS.gene42882:intron |
| TTCTCACTTGGTGATTGATT+TGG | 0.364973 | 7.2:+33116228 | None:intergenic |
| TAAAACACACCTGACAACTA+TGG | 0.370900 | 7.2:+33111019 | None:intergenic |
| CAATGTCCAGCTATCGAATC+AGG | 0.382532 | 7.2:-33113138 | MS.gene42882:intron |
| CAACTTTCGTGAAACCTTGT+TGG | 0.387488 | 7.2:-33112677 | MS.gene42882:CDS |
| CTTCCTGTCAAGTCCTTAGA+TGG | 0.390368 | 7.2:-33115356 | MS.gene42882:CDS |
| AGGTTTCACGAAAGTTGAAA+TGG | 0.393897 | 7.2:+33112683 | None:intergenic |
| GGAATCTCCGGTGGGAGGTC+CGG | 0.394041 | 7.2:+33116337 | None:intergenic |
| CTCGTACTTGAATACAGGCC+TGG | 0.395896 | 7.2:-33109643 | MS.gene42882:CDS |
| TTTCGTTCTCCTTGATATCA+TGG | 0.396020 | 7.2:+33107387 | None:intergenic |
| AACATTCAAGGCATCAAGAT+TGG | 0.398151 | 7.2:+33109699 | None:intergenic |
| CAATGGAATCAGGGTGCAAC+TGG | 0.400559 | 7.2:+33111719 | None:intergenic |
| AGAAATTTAATATTGGACTC+TGG | 0.407619 | 7.2:+33113380 | None:intergenic |
| GAAATTTAATATTGGACTCT+GGG | 0.413237 | 7.2:+33113381 | None:intergenic |
| CAAGGCTGCTTCCTTTAGCC+TGG | 0.420576 | 7.2:-33111129 | MS.gene42882:CDS |
| GTTCAGTGCTCATGCTTGAA+AGG | 0.426198 | 7.2:+33107633 | None:intergenic |
| CTGATTGACCTTGATTTCCT+GGG | 0.428434 | 7.2:-33109847 | MS.gene42882:CDS |
| CTTGTCTCTTTCATTTGATG+AGG | 0.433392 | 7.2:-33111401 | MS.gene42882:CDS |
| CGAAAGGTTGAGAAGTAAGA+TGG | 0.434234 | 7.2:-33107369 | MS.gene42882:CDS |
| GGTTTCACGAAAGTTGAAAT+GGG | 0.434629 | 7.2:+33112684 | None:intergenic |
| GTCAGGCCTGAAGCAAACCC+TGG | 0.435526 | 7.2:-33109949 | MS.gene42882:intron |
| ACTTGGACTTCTATCCCTCT+TGG | 0.436086 | 7.2:-33113309 | MS.gene42882:CDS |
| ACAATCTCGTACTTGAATAC+AGG | 0.439384 | 7.2:-33109648 | MS.gene42882:CDS |
| GGGGCACTTTCTGCTGCAGT+TGG | 0.444294 | 7.2:-33109928 | MS.gene42882:CDS |
| CCAGGAAATCAAGGTCAATC+AGG | 0.448333 | 7.2:+33109848 | None:intergenic |
| TATGGTTCTCCATGATATCA+AGG | 0.449090 | 7.2:-33107396 | MS.gene42882:CDS |
| AGGATTTGGAGAGGAAGACT+TGG | 0.451776 | 7.2:+33107606 | None:intergenic |
| TGCCTTGAATGTTGATCTAC+AGG | 0.453178 | 7.2:-33109689 | MS.gene42882:CDS |
| TAGATGGACAAGTCTATTAT+CGG | 0.455650 | 7.2:-33115340 | MS.gene42882:CDS |
| AAGTGTAAACTTGCAGAGTT+GGG | 0.459973 | 7.2:-33113422 | MS.gene42882:CDS |
| TAAGTCACTCTTTACAAATG+AGG | 0.461486 | 7.2:-33111812 | MS.gene42882:CDS |
| CAGAGATCAAGGAGAGGTGC+TGG | 0.466813 | 7.2:-33109126 | MS.gene42882:CDS |
| ACAATGGTCGATCATTTACT+TGG | 0.467077 | 7.2:+33107281 | None:intergenic |
| GGGAAAGAAACAAGGGAAAG+AGG | 0.470117 | 7.2:-33115080 | MS.gene42882:CDS |
| GCTACATTGTCACTGTCTGT+TGG | 0.472467 | 7.2:-33109026 | MS.gene42882:CDS |
| GAAGTGTAAACTTGCAGAGT+TGG | 0.474407 | 7.2:-33113423 | MS.gene42882:CDS |
| CTCCATAACATCCAGGCTAA+AGG | 0.475833 | 7.2:+33111118 | None:intergenic |
| TGATGCTAAAGACGATGCTT+TGG | 0.479084 | 7.2:-33115465 | MS.gene42882:CDS |
| GTCGCCATCGTTGATATAGC+TGG | 0.481654 | 7.2:+33107659 | None:intergenic |
| CATTTGAAAATACTTGCTGC+TGG | 0.484809 | 7.2:-33109811 | MS.gene42882:CDS |
| CCTTGTTGGACGCGACTGTC+AGG | 0.485009 | 7.2:-33112663 | MS.gene42882:CDS |
| AGAGGTGGCTAAAGAAGAAG+TGG | 0.485345 | 7.2:-33115062 | MS.gene42882:CDS |
| GTGGGAGGTCCGGCGGAAGA+AGG | 0.486048 | 7.2:+33116347 | None:intergenic |
| CTTAAGAAAATTAGAAAAGA+GGG | 0.488504 | 7.2:-33115100 | MS.gene42882:CDS |
| CGATGCAGTCCATAGTTGTC+AGG | 0.489215 | 7.2:-33111028 | MS.gene42882:intron |
| GGAATATTCGACTTCATCGT+CGG | 0.490161 | 7.2:+33116315 | None:intergenic |
| CAAGTACGAGATTGTAAAGA+TGG | 0.492958 | 7.2:+33109656 | None:intergenic |
| GACGAATTTGACATCGTCAT+CGG | 0.493235 | 7.2:+33116294 | None:intergenic |
| TATAGCTGGATGATAGTGTT+TGG | 0.493942 | 7.2:+33107673 | None:intergenic |
| AGAAAAGAGGGAAAGAAACA+AGG | 0.495735 | 7.2:-33115088 | MS.gene42882:CDS |
| ACTGCAGCAGAAAGTGCCCC+AGG | 0.495917 | 7.2:+33109931 | None:intergenic |
| TGCACTTGACATTCTTGAGA+AGG | 0.497396 | 7.2:+33108834 | None:intergenic |
| AATCAGGCTTCCTACTGAAA+AGG | 0.498838 | 7.2:-33113122 | MS.gene42882:CDS |
| TGTAAAGAGTGACTTAATTG+TGG | 0.505650 | 7.2:+33111819 | None:intergenic |
| GCCCAAAATCCTTCTTCCGC+CGG | 0.506587 | 7.2:-33116356 | MS.gene42882:CDS |
| GATCTCACCATTGTTAAACT+TGG | 0.506724 | 7.2:-33113326 | MS.gene42882:CDS |
| TCGTACTTGAATACAGGCCT+GGG | 0.508085 | 7.2:-33109642 | MS.gene42882:CDS |
| TGAAAAGGAACAAGAAATGA+AGG | 0.508555 | 7.2:-33113107 | MS.gene42882:CDS |
| TGTCAAGTGCAGAAATCTGT+TGG | 0.509667 | 7.2:-33108822 | MS.gene42882:CDS |
| TGTTGGATCTGCAGACTCCA+TGG | 0.511900 | 7.2:-33109009 | MS.gene42882:CDS |
| ACTTAAGAAAATTAGAAAAG+AGG | 0.513083 | 7.2:-33115101 | MS.gene42882:CDS |
| ACTTTCTGCTGCAGTTGGAA+TGG | 0.514173 | 7.2:-33109923 | MS.gene42882:CDS |
| AAGTCACTCTTTACAAATGA+GGG | 0.514376 | 7.2:-33111811 | MS.gene42882:CDS |
| GGTGTCCAAGGAAGAAATCA+AGG | 0.515889 | 7.2:+33116249 | None:intergenic |
| GCTCCAGTAATGAGGCCATA+AGG | 0.516391 | 7.2:-33112633 | MS.gene42882:intron |
| GCTATATCAACGATGGCGAC+AGG | 0.516476 | 7.2:-33107656 | MS.gene42882:CDS |
| ACTTCATCGTCGGGAATCTC+CGG | 0.517078 | 7.2:+33116325 | None:intergenic |
| GTCCAATATTAAATTTCTGA+AGG | 0.517646 | 7.2:-33113375 | MS.gene42882:CDS |
| TGTCCATCTAAGGACTTGAC+AGG | 0.522856 | 7.2:+33115353 | None:intergenic |
| GGTACAGCTATCTAAAGATA+AGG | 0.526417 | 7.2:-33113348 | MS.gene42882:CDS |
| GAATATTCGACTTCATCGTC+GGG | 0.526890 | 7.2:+33116316 | None:intergenic |
| GTCCTGTAGATCAACATTCA+AGG | 0.527209 | 7.2:+33109687 | None:intergenic |
| AACTCTCCTCTCTGCATACA+AGG | 0.527866 | 7.2:-33113047 | MS.gene42882:intron |
| TTAGATCACCCAGGAAATCA+AGG | 0.530257 | 7.2:+33109839 | None:intergenic |
| GTCTCTTCTCCATAACATCC+AGG | 0.533894 | 7.2:+33111111 | None:intergenic |
| ATCTCTGAAAACAGCCAAGA+GGG | 0.534575 | 7.2:+33113295 | None:intergenic |
| TCAGGCCTGAAGCAAACCCT+GGG | 0.535947 | 7.2:-33109948 | MS.gene42882:intron |
| TTTAAGCGGTGCCCTTGCCT+CGG | 0.537575 | 7.2:-33107720 | MS.gene42882:CDS |
| GAAAAGAGGGAAAGAAACAA+GGG | 0.539173 | 7.2:-33115087 | MS.gene42882:CDS |
| ATCTCCGGTGGGAGGTCCGG+CGG | 0.539283 | 7.2:+33116340 | None:intergenic |
| TCTTGCGAGGTCTGAACAGA+TGG | 0.540752 | 7.2:-33111377 | MS.gene42882:CDS |
| TTCAGACATGGATCAAGCAA+TGG | 0.541177 | 7.2:+33109892 | None:intergenic |
| GGACAAGTCTATTATCGGAC+AGG | 0.541730 | 7.2:-33115335 | MS.gene42882:intron |
| TCAGACATGGATCAAGCAAT+GGG | 0.542395 | 7.2:+33109893 | None:intergenic |
| TTCCCAAAGTACCGAGGCAA+GGG | 0.544124 | 7.2:+33107709 | None:intergenic |
| GGACTCTGGGTCTGTTAGCA+AGG | 0.549508 | 7.2:+33113394 | None:intergenic |
| AAAATGACAGAAAGAAAAGC+AGG | 0.551759 | 7.2:-33111279 | MS.gene42882:CDS |
| TAGGCAGCATGACATGCAAA+AGG | 0.553177 | 7.2:-33109072 | MS.gene42882:CDS |
| ACATGGATCAAGCAATGGGT+GGG | 0.554678 | 7.2:+33109897 | None:intergenic |
| GAGGTCTGAACAGATGGAAA+AGG | 0.557653 | 7.2:-33111371 | MS.gene42882:CDS |
| TCTTCCGCCGGACCTCCCAC+CGG | 0.559973 | 7.2:-33116344 | MS.gene42882:CDS |
| TAAAAGCAACGATGCAACAT+TGG | 0.562126 | 7.2:+33109734 | None:intergenic |
| GGATCTGCAGACTCCATGGC+TGG | 0.564792 | 7.2:-33109005 | MS.gene42882:intron |
| TCATCGTCGGGAATCTCCGG+TGG | 0.565791 | 7.2:+33116328 | None:intergenic |
| AAGCAACGATGCAACATTGG+AGG | 0.566366 | 7.2:+33109737 | None:intergenic |
| GGACTTGTATCATACCTCAA+TGG | 0.567565 | 7.2:+33111702 | None:intergenic |
| AATGCTACATCAGATTCCAT+TGG | 0.568259 | 7.2:-33107482 | MS.gene42882:CDS |
| TTGGAAAATGACACTGGAGG+GGG | 0.568636 | 7.2:-33108803 | MS.gene42882:CDS |
| TGATCCATGTCTGAAGGGAC+TGG | 0.569504 | 7.2:-33109884 | MS.gene42882:CDS |
| TTTGCCAGTCCCTTCAGACA+TGG | 0.571273 | 7.2:+33109880 | None:intergenic |
| ACTGCAACAAGCTGAAATGA+AGG | 0.571899 | 7.2:+33112739 | None:intergenic |
| CGTTACTGCAGTGGAACCAA+TGG | 0.571963 | 7.2:+33107466 | None:intergenic |
| TGTTGGAAAATGACACTGGA+GGG | 0.572592 | 7.2:-33108805 | MS.gene42882:CDS |
| ATATTAAAACATACCAGCCA+TGG | 0.576684 | 7.2:+33108992 | None:intergenic |
| GTATCCTAAGGCATGTTACA+CGG | 0.576755 | 7.2:-33115493 | MS.gene42882:intron |
| GTAAAGGAGAGGATTTGGAG+AGG | 0.577373 | 7.2:+33107597 | None:intergenic |
| GAACATAAGCTCCAGTAATG+AGG | 0.577735 | 7.2:-33112641 | MS.gene42882:CDS |
| GGTCCAAGCAAAGAGGAAAG+TGG | 0.578852 | 7.2:-33115184 | MS.gene42882:CDS |
| TTGCTTGATCCATGTCTGAA+GGG | 0.579716 | 7.2:-33109889 | MS.gene42882:CDS |
| TATCCTAAGGCATGTTACAC+GGG | 0.580959 | 7.2:-33115492 | MS.gene42882:intron |
| TCAACTGATCCTAATTTAAG+CGG | 0.581329 | 7.2:-33107734 | MS.gene42882:CDS |
| GACATGGATCAAGCAATGGG+TGG | 0.583349 | 7.2:+33109896 | None:intergenic |
| ATGTCCTTGAAAGCTAGTAA+AGG | 0.584546 | 7.2:+33107581 | None:intergenic |
| AATCTGTTGGAAAATGACAC+TGG | 0.587092 | 7.2:-33108809 | MS.gene42882:CDS |
| ATTGCTTGATCCATGTCTGA+AGG | 0.589017 | 7.2:-33109890 | MS.gene42882:CDS |
| ACATGGTGGCGAAGCTACTG+TGG | 0.591883 | 7.2:-33111785 | MS.gene42882:CDS |
| ATCATACCTCAATGGAATCA+GGG | 0.594474 | 7.2:+33111710 | None:intergenic |
| CATGGATCAAGCAATGGGTG+GGG | 0.594556 | 7.2:+33109898 | None:intergenic |
| GAGATGCTTTACTGTGACCA+AGG | 0.594849 | 7.2:+33108856 | None:intergenic |
| GTTGCACCCTGATTCCATTG+AGG | 0.596771 | 7.2:-33111716 | MS.gene42882:intron |
| GTTCCCAAAGTACCGAGGCA+AGG | 0.598489 | 7.2:+33107708 | None:intergenic |
| GTCATCAGGCTTACTTGCAA+AGG | 0.600005 | 7.2:-33112783 | MS.gene42882:intron |
| GGTGATTGATTTGGTGTCCA+AGG | 0.602110 | 7.2:+33116237 | None:intergenic |
| GTTGGAAAATGACACTGGAG+GGG | 0.604318 | 7.2:-33108804 | MS.gene42882:CDS |
| CCTGACAGTCGCGTCCAACA+AGG | 0.609536 | 7.2:+33112663 | None:intergenic |
| CGTCGGGAATCTCCGGTGGG+AGG | 0.613865 | 7.2:+33116332 | None:intergenic |
| ATGATATCAAGGAGAACGAA+AGG | 0.614882 | 7.2:-33107385 | MS.gene42882:CDS |
| GTTTCACGAAAGTTGAAATG+GGG | 0.615913 | 7.2:+33112685 | None:intergenic |
| TAGAAGTCCAAGTTTAACAA+TGG | 0.616701 | 7.2:+33113319 | None:intergenic |
| GAATGAACTCGTTACTGCAG+TGG | 0.617086 | 7.2:+33107457 | None:intergenic |
| GTAGGTTGAAGCTGATTACA+AGG | 0.620124 | 7.2:-33111147 | MS.gene42882:intron |
| CTTGAAAGCTAGTAAAGGAG+AGG | 0.628043 | 7.2:+33107586 | None:intergenic |
| GTCGATTTCGAAGACAAGAG+AGG | 0.634635 | 7.2:-33111251 | MS.gene42882:CDS |
| TTTACAAATGAGGGTAAACA+TGG | 0.634841 | 7.2:-33111802 | MS.gene42882:CDS |
| CATTTGATGAGGATCTTGCG+AGG | 0.635745 | 7.2:-33111390 | MS.gene42882:CDS |
| AGTAAATGGTCCAAGCAAAG+AGG | 0.639853 | 7.2:-33115191 | MS.gene42882:CDS |
| TTGAAAATACTTGCTGCTGG+AGG | 0.643680 | 7.2:-33109808 | MS.gene42882:CDS |
| CATCGTCGGGAATCTCCGGT+GGG | 0.646575 | 7.2:+33116329 | None:intergenic |
| AACAAGAGGAAACGATCACA+TGG | 0.651184 | 7.2:-33107506 | MS.gene42882:CDS |
| CTGCAGCAGAAAGTGCCCCA+GGG | 0.653084 | 7.2:+33109932 | None:intergenic |
| TACTTGAATACAGGCCTGGG+AGG | 0.657851 | 7.2:-33109639 | MS.gene42882:intron |
| TGCTGGAGGTAGCAACACAT+CGG | 0.659375 | 7.2:-33109794 | MS.gene42882:CDS |
| GTATTAAATTAAACAACAAG+AGG | 0.659524 | 7.2:-33107520 | MS.gene42882:CDS |
| AGATAATGTTGTGTGACGAT+AGG | 0.661685 | 7.2:-33109091 | MS.gene42882:CDS |
| ACATTCAGCAGCCACGCGGA+CGG | 0.664487 | 7.2:-33115218 | MS.gene42882:intron |
| AATGGTTCATTAGATCACCC+AGG | 0.667630 | 7.2:+33109830 | None:intergenic |
| TATCTCTGAAAACAGCCAAG+AGG | 0.668166 | 7.2:+33113294 | None:intergenic |
| AAGCAAAGAGGAAAGTGGAG+AGG | 0.669101 | 7.2:-33115179 | MS.gene42882:CDS |
| CTGTTGGAAAATGACACTGG+AGG | 0.671859 | 7.2:-33108806 | MS.gene42882:CDS |
| AAGCTACTGTGGAGGCTGTG+CGG | 0.674455 | 7.2:-33111774 | MS.gene42882:CDS |
| TCATCCAGCTATATCAACGA+TGG | 0.682549 | 7.2:-33107663 | MS.gene42882:CDS |
| GATTTCGAAGACAAGAGAGG+AGG | 0.684368 | 7.2:-33111248 | MS.gene42882:intron |
| ATTTACTGGTGCCGTCCGCG+TGG | 0.691197 | 7.2:+33115207 | None:intergenic |
| ACAAATGAGGGTAAACATGG+TGG | 0.697493 | 7.2:-33111799 | MS.gene42882:CDS |
| TATACCAAAACTGTAGACTG+TGG | 0.701077 | 7.2:+33115031 | None:intergenic |
| ACTGAGTTCCCAAAGTACCG+AGG | 0.704577 | 7.2:+33107703 | None:intergenic |
| AAAGAAACAAGGGAAAGAGG+TGG | 0.707757 | 7.2:-33115077 | MS.gene42882:CDS |
| TATGAACCTTGTATGCAGAG+AGG | 0.709150 | 7.2:+33113041 | None:intergenic |
| TGGTGGCGAAGCTACTGTGG+AGG | 0.710292 | 7.2:-33111782 | MS.gene42882:CDS |
| ATGGAACAGAGATCAAGGAG+AGG | 0.717938 | 7.2:-33109132 | MS.gene42882:intron |
| CAGGCCTGAAGCAAACCCTG+GGG | 0.724330 | 7.2:-33109947 | MS.gene42882:CDS |
| TCTCACATTCAGCAGCCACG+CGG | 0.781446 | 7.2:-33115222 | MS.gene42882:intron |
| AGTAACGAGTTCATTCAACG+AGG | 0.819067 | 7.2:-33107450 | MS.gene42882:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 33107292 | 33116401 | 33107292 | ID=MS.gene42882 |
| chr7.2 | mRNA | 33107292 | 33116401 | 33107292 | ID=MS.gene42882.t1;Parent=MS.gene42882 |
| chr7.2 | exon | 33116235 | 33116401 | 33116235 | ID=MS.gene42882.t1.exon1;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33116235 | 33116401 | 33116235 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33115336 | 33115505 | 33115336 | ID=MS.gene42882.t1.exon2;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33115336 | 33115505 | 33115336 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33115036 | 33115229 | 33115036 | ID=MS.gene42882.t1.exon3;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33115036 | 33115229 | 33115036 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33113284 | 33113492 | 33113284 | ID=MS.gene42882.t1.exon4;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33113284 | 33113492 | 33113284 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33113048 | 33113150 | 33113048 | ID=MS.gene42882.t1.exon5;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33113048 | 33113150 | 33113048 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33112634 | 33112797 | 33112634 | ID=MS.gene42882.t1.exon6;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33112634 | 33112797 | 33112634 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33111717 | 33111855 | 33111717 | ID=MS.gene42882.t1.exon7;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33111717 | 33111855 | 33111717 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33111249 | 33111428 | 33111249 | ID=MS.gene42882.t1.exon8;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33111249 | 33111428 | 33111249 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33111029 | 33111165 | 33111029 | ID=MS.gene42882.t1.exon9;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33111029 | 33111165 | 33111029 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33109640 | 33109966 | 33109640 | ID=MS.gene42882.t1.exon10;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33109640 | 33109966 | 33109640 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33109006 | 33109145 | 33109006 | ID=MS.gene42882.t1.exon11;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33109006 | 33109145 | 33109006 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33108781 | 33108878 | 33108781 | ID=MS.gene42882.t1.exon12;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33108781 | 33108878 | 33108781 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| chr7.2 | exon | 33107292 | 33107771 | 33107292 | ID=MS.gene42882.t1.exon13;Parent=MS.gene42882.t1 |
| chr7.2 | CDS | 33107292 | 33107771 | 33107292 | ID=cds.MS.gene42882.t1;Parent=MS.gene42882.t1 |
| Gene Sequence |
| Protein sequence |
