Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026875.t1 | XP_003596313.1 | 92.9 | 424 | 30 | 0 | 1 | 424 | 24 | 447 | 4.00E-215 | 757.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026875.t1 | Q9EQ28 | 27.1 | 340 | 206 | 12 | 1 | 316 | 21 | 342 | 4.1e-11 | 70.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026875.t1 | G7ITE6 | 92.9 | 424 | 30 | 0 | 1 | 424 | 24 | 447 | 2.9e-215 | 757.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene017982 | MS.gene026875 | PPI |
MS.gene013296 | MS.gene026875 | PPI |
MS.gene40912 | MS.gene026875 | PPI |
MS.gene072401 | MS.gene026875 | PPI |
MS.gene05640 | MS.gene026875 | PPI |
MS.gene049266 | MS.gene026875 | PPI |
MS.gene08109 | MS.gene026875 | PPI |
MS.gene04079 | MS.gene026875 | PPI |
MS.gene06380 | MS.gene026875 | PPI |
MS.gene026875 | MS.gene04620 | PPI |
MS.gene04418 | MS.gene026875 | PPI |
MS.gene52656 | MS.gene026875 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026875.t1 | MTR_2g075820 | 97.170 | 424 | 12 | 0 | 1 | 424 | 24 | 447 | 0.0 | 839 |
MS.gene026875.t1 | MTR_2g075820 | 96.934 | 424 | 12 | 1 | 1 | 424 | 24 | 446 | 0.0 | 832 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026875.t1 | AT1G78650 | 41.876 | 437 | 211 | 11 | 1 | 424 | 24 | 430 | 4.05e-86 | 272 |
Find 77 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGGTTCGTTGGCAAGCTTC+TGG | 0.168208 | 2.4:-21565261 | MS.gene026875:CDS |
TCCTTATTTACACAAATTTC+TGG | 0.169560 | 2.4:+21564645 | None:intergenic |
GAGTTAAAACAATGCATTTA+AGG | 0.201437 | 2.4:+21564538 | None:intergenic |
CTCTGGCACTGCGCAAGGCT+TGG | 0.218626 | 2.4:+21565219 | None:intergenic |
CCTTCAGAAGTTGTTGAAAA+TGG | 0.223428 | 2.4:-21565038 | MS.gene026875:intron |
CTGATAACTGATAAATCTTT+TGG | 0.274120 | 2.4:+21564720 | None:intergenic |
GATAAAAGTGGCTCTGTTAA+TGG | 0.294110 | 2.4:-21565283 | MS.gene026875:CDS |
TGTTATATGTAGGTTGCTTC+AGG | 0.309652 | 2.4:-21568168 | MS.gene026875:intron |
GTGACTTCTACACTATAATA+TGG | 0.315529 | 2.4:+21564500 | None:intergenic |
TCCAGAAATTTGTGTAAATA+AGG | 0.325298 | 2.4:-21564646 | MS.gene026875:CDS |
TGAAATTAAGCCATTGGTTA+AGG | 0.332494 | 2.4:-21564778 | MS.gene026875:CDS |
TCTGGCACTGCGCAAGGCTT+GGG | 0.341878 | 2.4:+21565220 | None:intergenic |
TCCCAAGCAATTATCAGCTT+TGG | 0.343926 | 2.4:+21566926 | None:intergenic |
TCTTTAGATGACAGTTTACT+AGG | 0.350822 | 2.4:+21564861 | None:intergenic |
TACCATGTAAGGCTTGTTAC+TGG | 0.354891 | 2.4:-21568068 | MS.gene026875:CDS |
CAAAGCACAGCTGCATCCTT+TGG | 0.355427 | 2.4:+21566993 | None:intergenic |
ATCAGCAAGTGCACAAGTAC+TGG | 0.359563 | 2.4:-21564702 | MS.gene026875:CDS |
TATCATCAAATGAAGCAAAA+AGG | 0.364120 | 2.4:-21568308 | MS.gene026875:intron |
CTGCTTCATGAGCACAAGTT+TGG | 0.365644 | 2.4:+21565015 | None:intergenic |
TGGTGTATGCTTTGTCTGGC+TGG | 0.371747 | 2.4:-21568112 | MS.gene026875:CDS |
ACCAATGGCTTAATTTCAAC+CGG | 0.383656 | 2.4:+21564783 | None:intergenic |
GTTACTGGGACAATGCTTGC+AGG | 0.384169 | 2.4:-21568053 | MS.gene026875:intron |
AGGTTCGTTGGCAAGCTTCT+GGG | 0.384533 | 2.4:-21565260 | MS.gene026875:CDS |
CAAAGGATGCAGCTGTGCTT+TGG | 0.395728 | 2.4:-21566992 | MS.gene026875:CDS |
TGAACAACATTACTCTTTGT+TGG | 0.409982 | 2.4:+21565496 | None:intergenic |
TTCCAAAGCTGATAATTGCT+TGG | 0.418548 | 2.4:-21566928 | MS.gene026875:CDS |
GAAGTGGTGTATGCTTTGTC+TGG | 0.418622 | 2.4:-21568116 | MS.gene026875:CDS |
TCTTCCTCGTTCATCAATCC+TGG | 0.420011 | 2.4:+21564569 | None:intergenic |
CCTGTTGGATGATCTTCTTA+AGG | 0.423040 | 2.4:+21564953 | None:intergenic |
TCCAAAGCTGATAATTGCTT+GGG | 0.428396 | 2.4:-21566927 | MS.gene026875:CDS |
AGTAAAATCTGTAGTAGGCT+TGG | 0.430762 | 2.4:-21565521 | MS.gene026875:CDS |
TTGTGCTCATGAAGCAGTAC+TGG | 0.437428 | 2.4:-21565009 | MS.gene026875:CDS |
AGTTAAAACAATGCATTTAA+GGG | 0.444285 | 2.4:+21564539 | None:intergenic |
GTAAAATCTGTAGTAGGCTT+GGG | 0.450654 | 2.4:-21565520 | MS.gene026875:CDS |
ACCGGTTGAAATTAAGCCAT+TGG | 0.457997 | 2.4:-21564784 | MS.gene026875:CDS |
ATAATTGCTTGGGAGACAAT+AGG | 0.464445 | 2.4:-21566917 | MS.gene026875:intron |
GATCATCCAACAGGAAAAGA+AGG | 0.466706 | 2.4:-21564944 | MS.gene026875:CDS |
CCAGAAGTAAAATCTGTAGT+AGG | 0.467548 | 2.4:-21565526 | MS.gene026875:CDS |
GTATTCCTAGCTACCATGTA+AGG | 0.471927 | 2.4:-21568079 | MS.gene026875:CDS |
AAGGAACGAGGATGGACAAC+CGG | 0.480561 | 2.4:-21565563 | MS.gene026875:CDS |
TTTCTCCTCTTAGGTGAACC+TGG | 0.487423 | 2.4:+21564603 | None:intergenic |
CTCTGTTAATGGAGGTTCGT+TGG | 0.494085 | 2.4:-21565272 | MS.gene026875:CDS |
CCTTAAGAAGATCATCCAAC+AGG | 0.498177 | 2.4:-21564953 | MS.gene026875:CDS |
GAAGCACAGGAAGAGTTTGA+TGG | 0.504579 | 2.4:-21567056 | MS.gene026875:CDS |
TCTCTCCAGGTTCACCTAAG+AGG | 0.514966 | 2.4:-21564608 | MS.gene026875:CDS |
AGCAATGGTACAGGAAATGC+AGG | 0.517649 | 2.4:-21565388 | MS.gene026875:CDS |
AACATGATTTCAAAACCTGC+AGG | 0.524551 | 2.4:-21565187 | MS.gene026875:intron |
GGTTCGTTGGCAAGCTTCTG+GGG | 0.540265 | 2.4:-21565259 | MS.gene026875:CDS |
GGAGAAAAGTGATGAAGACC+AGG | 0.540800 | 2.4:-21564587 | MS.gene026875:CDS |
ACTCTTTCATCCTTAACCAA+TGG | 0.541274 | 2.4:+21564768 | None:intergenic |
GACAGTTTACTAGGGACCTC+AGG | 0.543644 | 2.4:+21564870 | None:intergenic |
ACAAGCCTTACATGGTAGCT+AGG | 0.543674 | 2.4:+21568074 | None:intergenic |
TCTGGAGTGGCAGAAACTGC+CGG | 0.547602 | 2.4:+21565544 | None:intergenic |
AATTTCAGGTTTCATACAAG+TGG | 0.549313 | 2.4:-21568350 | None:intergenic |
AAGAGTGAAAGCAATGGTAC+AGG | 0.550651 | 2.4:-21565397 | MS.gene026875:CDS |
AAGTCTCTTCCCTTGCCCGC+AGG | 0.555927 | 2.4:-21565325 | MS.gene026875:CDS |
CTTTAGATGACAGTTTACTA+GGG | 0.562262 | 2.4:+21564862 | None:intergenic |
ACCATGTAAGGCTTGTTACT+GGG | 0.562390 | 2.4:-21568067 | MS.gene026875:CDS |
AAGCACAGGAAGAGTTTGAT+GGG | 0.563128 | 2.4:-21567055 | MS.gene026875:CDS |
TGATCTCAAAACACAGAATG+TGG | 0.563793 | 2.4:-21565431 | MS.gene026875:CDS |
TCCCAGTAACAAGCCTTACA+TGG | 0.567820 | 2.4:+21568066 | None:intergenic |
TAGCTTGCACACTATATACC+TGG | 0.568621 | 2.4:+21567021 | None:intergenic |
TGATGGGAAATGCTCAGTCC+AGG | 0.568705 | 2.4:-21567039 | MS.gene026875:CDS |
CAAGCCTTGCGCAGTGCCAG+AGG | 0.577317 | 2.4:-21565218 | MS.gene026875:CDS |
TCAGCAAGTGCACAAGTACT+GGG | 0.578189 | 2.4:-21564701 | MS.gene026875:CDS |
ACATGAGGATGGGTTGGAAG+TGG | 0.582631 | 2.4:-21568132 | MS.gene026875:CDS |
AAAGGACAAGCTGATAAAAG+TGG | 0.583030 | 2.4:-21565295 | MS.gene026875:CDS |
ATTGATGAACGAGGAAGAGA+AGG | 0.588225 | 2.4:-21564564 | MS.gene026875:CDS |
ATCATCCAACAGGAAAAGAA+GGG | 0.618627 | 2.4:-21564943 | MS.gene026875:CDS |
TGTGCTCATGAAGCAGTACT+GGG | 0.619552 | 2.4:-21565008 | MS.gene026875:CDS |
TGTGCAAGCTAGTATTCCAA+AGG | 0.641371 | 2.4:-21567009 | MS.gene026875:CDS |
AAAAGTGGCTCTGTTAATGG+AGG | 0.643109 | 2.4:-21565280 | MS.gene026875:CDS |
GATGTCAAGAGTGAAAGCAA+TGG | 0.672437 | 2.4:-21565403 | MS.gene026875:CDS |
ATAATATGGAAGAAAGAACC+CGG | 0.686118 | 2.4:+21564514 | None:intergenic |
CATCAGTTTAGCATCACCTG+AGG | 0.714142 | 2.4:-21564886 | MS.gene026875:CDS |
AAGACCAGGATTGATGAACG+AGG | 0.744480 | 2.4:-21564573 | MS.gene026875:CDS |
CTGGGTGACAGTGATGACGA+TGG | 0.808132 | 2.4:-21564990 | MS.gene026875:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATATTAGATTGATTATTT+TGG | + | chr2.4:21567021-21567040 | None:intergenic | 10.0% |
!!! | GGAATTTTTTTTTTTTTTTT+TGG | - | chr2.4:21566855-21566874 | MS.gene026875:intron | 10.0% |
!! | AATTAATATTATAGTTGTAG+CGG | - | chr2.4:21564849-21564868 | MS.gene026875:CDS | 15.0% |
!! | ATGTTCAGTTAAAAAAAAAT+TGG | - | chr2.4:21565668-21565687 | MS.gene026875:intron | 15.0% |
!! | GATATAATATAATATGATTC+TGG | - | chr2.4:21566712-21566731 | MS.gene026875:intron | 15.0% |
!!! | AGTATTTTAGTTTTTTGATA+AGG | - | chr2.4:21565989-21566008 | MS.gene026875:intron | 15.0% |
!!! | TAATTTTTATCTCATAAACT+TGG | - | chr2.4:21565300-21565319 | MS.gene026875:CDS | 15.0% |
!!! | TATTAGTCTATTAGAATATA+TGG | - | chr2.4:21566032-21566051 | MS.gene026875:intron | 15.0% |
!!! | TTGAAAATTTTGTTATATGT+AGG | - | chr2.4:21564676-21564695 | MS.gene026875:CDS | 15.0% |
!!! | TTTTTTTATGAACACTAAAT+TGG | + | chr2.4:21566556-21566575 | None:intergenic | 15.0% |
!! | AACTAACTCAATTTAGATTT+AGG | - | chr2.4:21565606-21565625 | MS.gene026875:intron | 20.0% |
!! | AATCTAATATTTCAATCTTC+TGG | - | chr2.4:21567029-21567048 | MS.gene026875:CDS | 20.0% |
!! | ACATGAAAGAAACATTATTA+GGG | + | chr2.4:21566429-21566448 | None:intergenic | 20.0% |
!! | AGGGAAAAAAATACAATTAA+TGG | + | chr2.4:21565214-21565233 | None:intergenic | 20.0% |
!! | AGTTAAAACAATGCATTTAA+GGG | + | chr2.4:21568318-21568337 | None:intergenic | 20.0% |
!! | ATATATTCAATAAACCTGAA+TGG | + | chr2.4:21567700-21567719 | None:intergenic | 20.0% |
!! | TCTGATATTAAAATGTAGAA+TGG | - | chr2.4:21566690-21566709 | MS.gene026875:intron | 20.0% |
! | AAATAAGGATAGTGCAAAAA+AGG | - | chr2.4:21568223-21568242 | MS.gene026875:intron | 25.0% |
! | AACTCAATTTAGATTTAGGT+GGG | - | chr2.4:21565610-21565629 | MS.gene026875:intron | 25.0% |
! | ATAAGAAAATAGCACAACAA+GGG | + | chr2.4:21566646-21566665 | None:intergenic | 25.0% |
! | CACATGAAAGAAACATTATT+AGG | + | chr2.4:21566430-21566449 | None:intergenic | 25.0% |
! | CTTCATTAATGAAGTTATTG+AGG | + | chr2.4:21567086-21567105 | None:intergenic | 25.0% |
! | GAGTTAAAACAATGCATTTA+AGG | + | chr2.4:21568319-21568338 | None:intergenic | 25.0% |
! | GATAATTTGAGTAAATGTCT+TGG | - | chr2.4:21564941-21564960 | MS.gene026875:CDS | 25.0% |
! | TAACTCAATTTAGATTTAGG+TGG | - | chr2.4:21565609-21565628 | MS.gene026875:intron | 25.0% |
! | TATAACTATAATCATCGAGA+AGG | + | chr2.4:21567743-21567762 | None:intergenic | 25.0% |
! | TATCATCAAATGAAGCAAAA+AGG | - | chr2.4:21564546-21564565 | MS.gene026875:CDS | 25.0% |
! | TCCAGAAATTTGTGTAAATA+AGG | - | chr2.4:21568208-21568227 | MS.gene026875:intron | 25.0% |
! | TTGAAAACAAACATAACTGA+TGG | - | chr2.4:21565401-21565420 | MS.gene026875:CDS | 25.0% |
!! | ATAACTGATAAATCTTTTGG+TGG | + | chr2.4:21568134-21568153 | None:intergenic | 25.0% |
!! | CTCTAATTCTTTTGTACAAA+GGG | - | chr2.4:21567264-21567283 | MS.gene026875:intron | 25.0% |
!! | CTGATAACTGATAAATCTTT+TGG | + | chr2.4:21568137-21568156 | None:intergenic | 25.0% |
!! | GAACTGACAAATTTTCTTTT+TGG | - | chr2.4:21566170-21566189 | MS.gene026875:intron | 25.0% |
!! | TCCTTATTTACACAAATTTC+TGG | + | chr2.4:21568212-21568231 | None:intergenic | 25.0% |
!! | TCTCTAATTCTTTTGTACAA+AGG | - | chr2.4:21567263-21567282 | MS.gene026875:intron | 25.0% |
!!! | ATTGATGGGTTTTTTTACTA+TGG | - | chr2.4:21564635-21564654 | MS.gene026875:CDS | 25.0% |
!!! | GAAATTTTTTCTCAACTCAT+TGG | + | chr2.4:21565706-21565725 | None:intergenic | 25.0% |
!!! | TGACTTTTTGTCATTTTGTT+CGG | + | chr2.4:21568021-21568040 | None:intergenic | 25.0% |
!!! | TGCTTTGAATTTTGATTTAC+CGG | - | chr2.4:21568052-21568071 | MS.gene026875:intron | 25.0% |
!!! | TTTAGTTTTATGCAGTTGAT+GGG | - | chr2.4:21564576-21564595 | MS.gene026875:CDS | 25.0% |
!!! | TTTTAGTTTTATGCAGTTGA+TGG | - | chr2.4:21564575-21564594 | MS.gene026875:CDS | 25.0% |
AACGTTACCCAAAAAATTTC+TGG | + | chr2.4:21566252-21566271 | None:intergenic | 30.0% | |
AAGCAAGTCATGATATTAGT+AGG | - | chr2.4:21566076-21566095 | MS.gene026875:intron | 30.0% | |
AATTGACCATACCAAAATGA+TGG | + | chr2.4:21565559-21565578 | None:intergenic | 30.0% | |
ATAATATGGAAGAAAGAACC+CGG | + | chr2.4:21568343-21568362 | None:intergenic | 30.0% | |
ATCAAATGAAGCAAAAAGGT+AGG | - | chr2.4:21564550-21564569 | MS.gene026875:CDS | 30.0% | |
ATTGACCATACCAAAATGAT+GGG | + | chr2.4:21565558-21565577 | None:intergenic | 30.0% | |
CTATTACATGTTCCAAAACT+TGG | - | chr2.4:21566394-21566413 | MS.gene026875:intron | 30.0% | |
CTTTAGATGACAGTTTACTA+GGG | + | chr2.4:21567995-21568014 | None:intergenic | 30.0% | |
CTTTCATGTGACCAAAAAAT+GGG | - | chr2.4:21566440-21566459 | MS.gene026875:intron | 30.0% | |
GAAAAAATTTCATGTCACTC+TGG | - | chr2.4:21565715-21565734 | MS.gene026875:intron | 30.0% | |
GATAAGAAAATAGCACAACA+AGG | + | chr2.4:21566647-21566666 | None:intergenic | 30.0% | |
GGTTCTTTCTTCCATATTAT+AGG | - | chr2.4:21568343-21568362 | MS.gene026875:CDS | 30.0% | |
GTAATAGTGATAGATTGTCT+TGG | + | chr2.4:21566381-21566400 | None:intergenic | 30.0% | |
TAAGAAAATAGCACAACAAG+GGG | + | chr2.4:21566645-21566664 | None:intergenic | 30.0% | |
TATTAGACATGCCTTCAATT+AGG | - | chr2.4:21565146-21565165 | MS.gene026875:intron | 30.0% | |
TCAAATGAAGCAAAAAGGTA+GGG | - | chr2.4:21564551-21564570 | MS.gene026875:CDS | 30.0% | |
TCTTTAGATGACAGTTTACT+AGG | + | chr2.4:21567996-21568015 | None:intergenic | 30.0% | |
TCTTTCATGTGACCAAAAAA+TGG | - | chr2.4:21566439-21566458 | MS.gene026875:intron | 30.0% | |
TGAAAGAAACATTATTAGGG+AGG | + | chr2.4:21566426-21566445 | None:intergenic | 30.0% | |
TGAACAACATTACTCTTTGT+TGG | + | chr2.4:21567361-21567380 | None:intergenic | 30.0% | |
TGAGTTTATGCTTGTTTGTT+TGG | - | chr2.4:21565351-21565370 | MS.gene026875:CDS | 30.0% | |
TGTCAGTGTTGTATTATTGT+CGG | - | chr2.4:21565122-21565141 | MS.gene026875:intron | 30.0% | |
TTCATGTCATGGTTTCATAT+AGG | + | chr2.4:21565515-21565534 | None:intergenic | 30.0% | |
TTGTTGAAAAACATGAGGAT+GGG | - | chr2.4:21564712-21564731 | MS.gene026875:CDS | 30.0% | |
TTTAAGTGTCAGTGCTATAT+AGG | - | chr2.4:21565001-21565020 | MS.gene026875:CDS | 30.0% | |
TTTCTGTGAATTGCTTTAGT+AGG | - | chr2.4:21566270-21566289 | MS.gene026875:intron | 30.0% | |
TTTGTAGCCAGAAAAAAAAG+TGG | - | chr2.4:21566944-21566963 | MS.gene026875:CDS | 30.0% | |
TTTGTTGAAAAACATGAGGA+TGG | - | chr2.4:21564711-21564730 | MS.gene026875:CDS | 30.0% | |
! | ATCATGTTACTATTTTCCTC+TGG | + | chr2.4:21567655-21567674 | None:intergenic | 30.0% |
! | CTTTTGTACAAAGGGTAAAA+AGG | - | chr2.4:21567272-21567291 | MS.gene026875:intron | 30.0% |
! | GAATTGTGTGCTATGTTTTT+AGG | + | chr2.4:21567391-21567410 | None:intergenic | 30.0% |
! | TGAAATTAAGCCATTGGTTA+AGG | - | chr2.4:21568076-21568095 | MS.gene026875:CDS | 30.0% |
!! | ACTAATATCATGACTTGCTT+GGG | + | chr2.4:21566076-21566095 | None:intergenic | 30.0% |
!! | GTGTTTTCTTCATAGTTTTG+TGG | - | chr2.4:21565324-21565343 | MS.gene026875:CDS | 30.0% |
!! | TACTAATATCATGACTTGCT+TGG | + | chr2.4:21566077-21566096 | None:intergenic | 30.0% |
!! | TGTTGCTTTGTGAAATTGAT+GGG | - | chr2.4:21564621-21564640 | MS.gene026875:CDS | 30.0% |
!! | TTGTTGCTTTGTGAAATTGA+TGG | - | chr2.4:21564620-21564639 | MS.gene026875:CDS | 30.0% |
!!! | AATGCATTGTTTTAACTCAC+CGG | - | chr2.4:21568321-21568340 | MS.gene026875:CDS | 30.0% |
!!! | ACAAGAGACCAGAAATTTTT+TGG | - | chr2.4:21566241-21566260 | MS.gene026875:intron | 30.0% |
!!! | CAAGAGACCAGAAATTTTTT+GGG | - | chr2.4:21566242-21566261 | MS.gene026875:intron | 30.0% |
AAAGGACAAGCTGATAAAAG+TGG | - | chr2.4:21567559-21567578 | MS.gene026875:intron | 35.0% | |
AACATGATTTCAAAACCTGC+AGG | - | chr2.4:21567667-21567686 | MS.gene026875:intron | 35.0% | |
AACCATGACATGAACCAATT+TGG | - | chr2.4:21565521-21565540 | MS.gene026875:CDS | 35.0% | |
ACCAATGGCTTAATTTCAAC+CGG | + | chr2.4:21568074-21568093 | None:intergenic | 35.0% | |
ACTCTTTCATCCTTAACCAA+TGG | + | chr2.4:21568089-21568108 | None:intergenic | 35.0% | |
AGTAAAATCTGTAGTAGGCT+TGG | - | chr2.4:21567333-21567352 | MS.gene026875:intron | 35.0% | |
ATAATTGCTTGGGAGACAAT+AGG | - | chr2.4:21565937-21565956 | MS.gene026875:intron | 35.0% | |
ATCATCCAACAGGAAAAGAA+GGG | - | chr2.4:21567911-21567930 | MS.gene026875:intron | 35.0% | |
ATTAGTGTTGTAATCGCCAT+TGG | + | chr2.4:21566205-21566224 | None:intergenic | 35.0% | |
ATTTGTCAGTTCAGTATGAG+TGG | + | chr2.4:21566162-21566181 | None:intergenic | 35.0% | |
CATATTCCAAAAGCAGAAGA+TGG | + | chr2.4:21566507-21566526 | None:intergenic | 35.0% | |
CCAGAAGTAAAATCTGTAGT+AGG | - | chr2.4:21567328-21567347 | MS.gene026875:intron | 35.0% | |
CCTACTTCCTAATGTTTGTA+AGG | + | chr2.4:21565745-21565764 | None:intergenic | 35.0% | |
CCTGTACAAAAAGATGCTAA+AGG | + | chr2.4:21565463-21565482 | None:intergenic | 35.0% | |
CCTTACAAACATTAGGAAGT+AGG | - | chr2.4:21565742-21565761 | MS.gene026875:intron | 35.0% | |
CCTTCAGAAGTTGTTGAAAA+TGG | - | chr2.4:21567816-21567835 | MS.gene026875:intron | 35.0% | |
CTGTCTTATATGTGTCTTTG+CGG | - | chr2.4:21567191-21567210 | MS.gene026875:intron | 35.0% | |
GTAAAATCTGTAGTAGGCTT+GGG | - | chr2.4:21567334-21567353 | MS.gene026875:intron | 35.0% | |
TCCAAAGCTGATAATTGCTT+GGG | - | chr2.4:21565927-21565946 | MS.gene026875:intron | 35.0% | |
TGAACTATGAAGGTTAGACA+CGG | - | chr2.4:21564878-21564897 | MS.gene026875:CDS | 35.0% | |
TGATCTCAAAACACAGAATG+TGG | - | chr2.4:21567423-21567442 | MS.gene026875:intron | 35.0% | |
TGTACAGGAACTGAAGTAAT+TGG | - | chr2.4:21565475-21565494 | MS.gene026875:CDS | 35.0% | |
TGTTATATGTAGGTTGCTTC+AGG | - | chr2.4:21564686-21564705 | MS.gene026875:CDS | 35.0% | |
TTCCAAAGCTGATAATTGCT+TGG | - | chr2.4:21565926-21565945 | MS.gene026875:intron | 35.0% | |
! | AAGAATTTTCTTTTACCGCC+AGG | - | chr2.4:21567130-21567149 | MS.gene026875:intron | 35.0% |
! | ACAAACATAACTGATGGTGA+TGG | - | chr2.4:21565407-21565426 | MS.gene026875:CDS | 35.0% |
! | ACAGTGAAGTATTAAGCAGT+AGG | + | chr2.4:21565234-21565253 | None:intergenic | 35.0% |
! | CAGTGAAGTATTAAGCAGTA+GGG | + | chr2.4:21565233-21565252 | None:intergenic | 35.0% |
! | CCATTTTCAACAACTTCTGA+AGG | + | chr2.4:21567819-21567838 | None:intergenic | 35.0% |
! | CCTACTACAGATTTTACTTC+TGG | + | chr2.4:21567331-21567350 | None:intergenic | 35.0% |
! | CCTTTAGCATCTTTTTGTAC+AGG | - | chr2.4:21565460-21565479 | MS.gene026875:CDS | 35.0% |
! | GACTTTTCTTTCTCTGCAAT+AGG | + | chr2.4:21567514-21567533 | None:intergenic | 35.0% |
! | GATAAAAGTGGCTCTGTTAA+TGG | - | chr2.4:21567571-21567590 | MS.gene026875:intron | 35.0% |
! | GGCTAACTAGCATATTTTTC+AGG | - | chr2.4:21567230-21567249 | MS.gene026875:intron | 35.0% |
! | GTTTTTCTGACCCATCATTT+TGG | - | chr2.4:21565545-21565564 | MS.gene026875:CDS | 35.0% |
!! | AAAGCTGCTTTGAAAAGTAG+GGG | - | chr2.4:21566834-21566853 | MS.gene026875:intron | 35.0% |
!! | AGAAAGCTGCTTTGAAAAGT+AGG | - | chr2.4:21566832-21566851 | MS.gene026875:intron | 35.0% |
!! | CACTGATTCAGAAGCTTTAT+TGG | + | chr2.4:21566904-21566923 | None:intergenic | 35.0% |
!! | CTAATATCATGACTTGCTTG+GGG | + | chr2.4:21566075-21566094 | None:intergenic | 35.0% |
!! | CTGATAAATCTTTTGGTGGT+TGG | + | chr2.4:21568130-21568149 | None:intergenic | 35.0% |
!! | GAAAGCTGCTTTGAAAAGTA+GGG | - | chr2.4:21566833-21566852 | MS.gene026875:intron | 35.0% |
!! | GGAGTTTGTTGAAAAACATG+AGG | - | chr2.4:21564707-21564726 | MS.gene026875:CDS | 35.0% |
!! | TAAATGTCTTGGTGTCGTAT+TGG | - | chr2.4:21564952-21564971 | MS.gene026875:CDS | 35.0% |
!! | TAATATCATGACTTGCTTGG+GGG | + | chr2.4:21566074-21566093 | None:intergenic | 35.0% |
!! | TACAGATTTTACTTCTGGAG+TGG | + | chr2.4:21567326-21567345 | None:intergenic | 35.0% |
!! | TCTTTCCATTGCTTTTGTGT+GGG | - | chr2.4:21566589-21566608 | MS.gene026875:intron | 35.0% |
!! | TTCATCACTTTTCTCCTCTT+AGG | + | chr2.4:21568263-21568282 | None:intergenic | 35.0% |
!!! | AGCATATTTTTCAGGTTCTG+TGG | - | chr2.4:21567238-21567257 | MS.gene026875:intron | 35.0% |
!!! | ATGCATTGTTTTAACTCACC+GGG | - | chr2.4:21568322-21568341 | MS.gene026875:CDS | 35.0% |
!!! | CAAACCACCACTTTTTTTTC+TGG | + | chr2.4:21566954-21566973 | None:intergenic | 35.0% |
!!! | CATTTTTTATGCAGAAGCAC+AGG | - | chr2.4:21565785-21565804 | MS.gene026875:intron | 35.0% |
!!! | GCATATTTTTCAGGTTCTGT+GGG | - | chr2.4:21567239-21567258 | MS.gene026875:intron | 35.0% |
!!! | TTGTGTGCTATGTTTTTAGG+AGG | + | chr2.4:21567388-21567407 | None:intergenic | 35.0% |
!!! | TTTTTGGTTCTCTTTGCCAA+TGG | - | chr2.4:21566186-21566205 | MS.gene026875:intron | 35.0% |
AAATATGCTAGTTAGCCACC+AGG | + | chr2.4:21567227-21567246 | None:intergenic | 40.0% | |
AAGAGTGAAAGCAATGGTAC+AGG | - | chr2.4:21567457-21567476 | MS.gene026875:intron | 40.0% | |
AAGCACAGGAAGAGTTTGAT+GGG | - | chr2.4:21565799-21565818 | MS.gene026875:intron | 40.0% | |
ACAAAGGGTAAAAAGGAACG+AGG | - | chr2.4:21567279-21567298 | MS.gene026875:intron | 40.0% | |
ACCGGTTGAAATTAAGCCAT+TGG | - | chr2.4:21568070-21568089 | MS.gene026875:CDS | 40.0% | |
ATTGATGAACGAGGAAGAGA+AGG | - | chr2.4:21568290-21568309 | MS.gene026875:intron | 40.0% | |
CCTGTTGGATGATCTTCTTA+AGG | + | chr2.4:21567904-21567923 | None:intergenic | 40.0% | |
CCTTAAGAAGATCATCCAAC+AGG | - | chr2.4:21567901-21567920 | MS.gene026875:intron | 40.0% | |
GAAATTCGAGAAACCAAACC+AGG | - | chr2.4:21566475-21566494 | MS.gene026875:intron | 40.0% | |
GATCATCCAACAGGAAAAGA+AGG | - | chr2.4:21567910-21567929 | MS.gene026875:intron | 40.0% | |
GATGTCAAGAGTGAAAGCAA+TGG | - | chr2.4:21567451-21567470 | MS.gene026875:intron | 40.0% | |
GCGGCAATTATGAACTATGA+AGG | - | chr2.4:21564868-21564887 | MS.gene026875:CDS | 40.0% | |
GGGTCAGAAAAACACCAAAT+TGG | + | chr2.4:21565538-21565557 | None:intergenic | 40.0% | |
GTAGCCAGAAAAAAAAGTGG+TGG | - | chr2.4:21566947-21566966 | MS.gene026875:CDS | 40.0% | |
GTATTCCTAGCTACCATGTA+AGG | - | chr2.4:21564775-21564794 | MS.gene026875:CDS | 40.0% | |
GTGCTCTATCATTCCAATAG+TGG | + | chr2.4:21566534-21566553 | None:intergenic | 40.0% | |
TCCCAAGCAATTATCAGCTT+TGG | + | chr2.4:21565931-21565950 | None:intergenic | 40.0% | |
TGAAAAACATGAGGATGGGT+TGG | - | chr2.4:21564716-21564735 | MS.gene026875:CDS | 40.0% | |
TGAAACCCACACAAAAGCAA+TGG | + | chr2.4:21566597-21566616 | None:intergenic | 40.0% | |
TGATTTCAAAACCTGCAGGT+TGG | - | chr2.4:21567671-21567690 | MS.gene026875:intron | 40.0% | |
TGGAATATGCTCTCCACTAT+TGG | - | chr2.4:21566518-21566537 | MS.gene026875:intron | 40.0% | |
TGTCAGTGCTATATAGGTAC+CGG | - | chr2.4:21565007-21565026 | MS.gene026875:CDS | 40.0% | |
TGTGCAAGCTAGTATTCCAA+AGG | - | chr2.4:21565845-21565864 | MS.gene026875:intron | 40.0% | |
TGTTGTGCAATTACATGTCC+TGG | + | chr2.4:21566797-21566816 | None:intergenic | 40.0% | |
TTCCAAAAGCAGAAGATGGA+AGG | + | chr2.4:21566503-21566522 | None:intergenic | 40.0% | |
! | AAAAGTGGCTCTGTTAATGG+AGG | - | chr2.4:21567574-21567593 | MS.gene026875:intron | 40.0% |
! | ATCCTTCCATCTTCTGCTTT+TGG | - | chr2.4:21566498-21566517 | MS.gene026875:intron | 40.0% |
! | ATGCCTTCAATTAGGAGTGT+TGG | - | chr2.4:21565154-21565173 | MS.gene026875:intron | 40.0% |
! | CACCAAATTGGTTCATGTCA+TGG | + | chr2.4:21565526-21565545 | None:intergenic | 40.0% |
! | GGGAGGAAAAAACCAAGTTT+TGG | + | chr2.4:21566409-21566428 | None:intergenic | 40.0% |
! | GGTTTGAGTGTCAAGCTTTT+GGG | - | chr2.4:21565372-21565391 | MS.gene026875:CDS | 40.0% |
! | GTTTGAGTGTCAAGCTTTTG+GGG | - | chr2.4:21565373-21565392 | MS.gene026875:CDS | 40.0% |
! | TAGCTTGCACACTATATACC+TGG | + | chr2.4:21565836-21565855 | None:intergenic | 40.0% |
! | TGGAGTGCCTTACAAACATT+AGG | - | chr2.4:21565735-21565754 | MS.gene026875:intron | 40.0% |
! | TGGTTTGAGTGTCAAGCTTT+TGG | - | chr2.4:21565371-21565390 | MS.gene026875:CDS | 40.0% |
! | TTGTCCTTTCTTTTTGCCTG+CGG | + | chr2.4:21567548-21567567 | None:intergenic | 40.0% |
!! | ACCATGTAAGGCTTGTTACT+GGG | - | chr2.4:21564787-21564806 | MS.gene026875:CDS | 40.0% |
!! | ATTGCTTTTGTGTGGGTTTC+AGG | - | chr2.4:21566596-21566615 | MS.gene026875:intron | 40.0% |
!! | GTCGTATTGGTGTCAGATAT+CGG | - | chr2.4:21564965-21564984 | MS.gene026875:CDS | 40.0% |
!! | GTCTTTCCATTGCTTTTGTG+TGG | - | chr2.4:21566588-21566607 | MS.gene026875:intron | 40.0% |
!! | TACCATGTAAGGCTTGTTAC+TGG | - | chr2.4:21564786-21564805 | MS.gene026875:CDS | 40.0% |
!! | TCGTATTGGTGTCAGATATC+GGG | - | chr2.4:21564966-21564985 | MS.gene026875:CDS | 40.0% |
!! | TCTGACCCATCATTTTGGTA+TGG | - | chr2.4:21565550-21565569 | MS.gene026875:CDS | 40.0% |
!!! | ACTGACACTGACCCATTTTT+TGG | + | chr2.4:21566454-21566473 | None:intergenic | 40.0% |
!!! | GTGCTATGTTTTTAGGAGGT+TGG | + | chr2.4:21567384-21567403 | None:intergenic | 40.0% |
AAGACCAGGATTGATGAACG+AGG | - | chr2.4:21568281-21568300 | MS.gene026875:intron | 45.0% | |
AAGATGGAAGGATCCTGGTT+TGG | + | chr2.4:21566491-21566510 | None:intergenic | 45.0% | |
AATGTGTGATGCATCTCTCC+AGG | - | chr2.4:21566776-21566795 | MS.gene026875:intron | 45.0% | |
ACAAGCCTTACATGGTAGCT+AGG | + | chr2.4:21564783-21564802 | None:intergenic | 45.0% | |
AGCAATGGTACAGGAAATGC+AGG | - | chr2.4:21567466-21567485 | MS.gene026875:intron | 45.0% | |
AGGGTAAAAAGGAACGAGGA+TGG | - | chr2.4:21567283-21567302 | MS.gene026875:intron | 45.0% | |
AGTGCAAAAAAGGTCTCTCC+AGG | - | chr2.4:21568233-21568252 | MS.gene026875:intron | 45.0% | |
ATCAGCAAGTGCACAAGTAC+TGG | - | chr2.4:21568152-21568171 | MS.gene026875:CDS | 45.0% | |
ATGAGTGGCATCAAATCTGC+TGG | + | chr2.4:21566147-21566166 | None:intergenic | 45.0% | |
CATCAGTTTAGCATCACCTG+AGG | - | chr2.4:21567968-21567987 | MS.gene026875:intron | 45.0% | |
CTAGTTAGCCACCAGGAATT+AGG | + | chr2.4:21567220-21567239 | None:intergenic | 45.0% | |
CTCTGTTAATGGAGGTTCGT+TGG | - | chr2.4:21567582-21567601 | MS.gene026875:intron | 45.0% | |
CTGCTTCATGAGCACAAGTT+TGG | + | chr2.4:21567842-21567861 | None:intergenic | 45.0% | |
CTTTGCGGTTTCCTAATTCC+TGG | - | chr2.4:21567206-21567225 | MS.gene026875:intron | 45.0% | |
GAAGCACAGGAAGAGTTTGA+TGG | - | chr2.4:21565798-21565817 | MS.gene026875:intron | 45.0% | |
GAAGTGGTGTATGCTTTGTC+TGG | - | chr2.4:21564738-21564757 | MS.gene026875:CDS | 45.0% | |
GCACCAACACTCCTAATTGA+AGG | + | chr2.4:21565160-21565179 | None:intergenic | 45.0% | |
GGAGAAAAGTGATGAAGACC+AGG | - | chr2.4:21568267-21568286 | MS.gene026875:intron | 45.0% | |
GTGTGTCTGTTTGACATGTC+CGG | + | chr2.4:21565029-21565048 | None:intergenic | 45.0% | |
TCAGCAAGTGCACAAGTACT+GGG | - | chr2.4:21568153-21568172 | MS.gene026875:CDS | 45.0% | |
TCCCAGTAACAAGCCTTACA+TGG | + | chr2.4:21564791-21564810 | None:intergenic | 45.0% | |
TCTTCCTCGTTCATCAATCC+TGG | + | chr2.4:21568288-21568307 | None:intergenic | 45.0% | |
TGTGCTCATGAAGCAGTACT+GGG | - | chr2.4:21567846-21567865 | MS.gene026875:intron | 45.0% | |
TTGCTTGGGAGACAATAGGT+AGG | - | chr2.4:21565941-21565960 | MS.gene026875:intron | 45.0% | |
TTGTGCTCATGAAGCAGTAC+TGG | - | chr2.4:21567845-21567864 | MS.gene026875:intron | 45.0% | |
TTTCTCCTCTTAGGTGAACC+TGG | + | chr2.4:21568254-21568273 | None:intergenic | 45.0% | |
! | GACAACCCTTCTTTTCCTGT+TGG | + | chr2.4:21567919-21567938 | None:intergenic | 45.0% |
! | TGTCCTTTCTTTTTGCCTGC+GGG | + | chr2.4:21567547-21567566 | None:intergenic | 45.0% |
!! | CAGTGTCGATGTATCAGTGT+CGG | + | chr2.4:21564919-21564938 | None:intergenic | 45.0% |
!! | TAATTATTGAATATATATTA+CGG | + | chr2.4:21566310-21566329 | None:intergenic | 5.0% |
AAGGAACGAGGATGGACAAC+CGG | - | chr2.4:21567291-21567310 | MS.gene026875:intron | 50.0% | |
AGAGTTCAAGACTGAGCACC+TGG | + | chr2.4:21567151-21567170 | None:intergenic | 50.0% | |
AGCAGAAGATGGAAGGATCC+TGG | + | chr2.4:21566496-21566515 | None:intergenic | 50.0% | |
AGGTTCGTTGGCAAGCTTCT+GGG | - | chr2.4:21567594-21567613 | MS.gene026875:intron | 50.0% | |
CAAAGCACAGCTGCATCCTT+TGG | + | chr2.4:21565864-21565883 | None:intergenic | 50.0% | |
CAAAGGATGCAGCTGTGCTT+TGG | - | chr2.4:21565862-21565881 | MS.gene026875:intron | 50.0% | |
CACAACAAGGGGTGAGAAAG+AGG | + | chr2.4:21566634-21566653 | None:intergenic | 50.0% | |
CTGAATGGAAACCAACCTGC+AGG | + | chr2.4:21567685-21567704 | None:intergenic | 50.0% | |
GACAGTTTACTAGGGACCTC+AGG | + | chr2.4:21567987-21568006 | None:intergenic | 50.0% | |
GTTACTGGGACAATGCTTGC+AGG | - | chr2.4:21564801-21564820 | MS.gene026875:CDS | 50.0% | |
TCTCTCCAGGTTCACCTAAG+AGG | - | chr2.4:21568246-21568265 | MS.gene026875:intron | 50.0% | |
TGATGGGAAATGCTCAGTCC+AGG | - | chr2.4:21565815-21565834 | MS.gene026875:intron | 50.0% | |
TGCGGTTTCCTAATTCCTGG+TGG | - | chr2.4:21567209-21567228 | MS.gene026875:intron | 50.0% | |
TGGTGTATGCTTTGTCTGGC+TGG | - | chr2.4:21564742-21564761 | MS.gene026875:CDS | 50.0% | |
TTGCCCGCAGGCAAAAAGAA+AGG | - | chr2.4:21567541-21567560 | MS.gene026875:intron | 50.0% | |
! | CAAGGCTTGGGTTTTGCAGA+TGG | + | chr2.4:21567625-21567644 | None:intergenic | 50.0% |
! | TTCTTTTTGCCTGCGGGCAA+GGG | + | chr2.4:21567541-21567560 | None:intergenic | 50.0% |
! | TTTCTTTTTGCCTGCGGGCA+AGG | + | chr2.4:21567542-21567561 | None:intergenic | 50.0% |
!! | ACATGAGGATGGGTTGGAAG+TGG | - | chr2.4:21564722-21564741 | MS.gene026875:CDS | 50.0% |
!! | CTGCAGGTTGGTTTCCATTC+AGG | - | chr2.4:21567683-21567702 | MS.gene026875:intron | 50.0% |
!! | TTAGGAGTGTTGGTGCTGCA+TGG | - | chr2.4:21565164-21565183 | MS.gene026875:intron | 50.0% |
!!! | AGTGTCAAGCTTTTGGGGTC+AGG | - | chr2.4:21565378-21565397 | MS.gene026875:CDS | 50.0% |
GAGGTTCGTTGGCAAGCTTC+TGG | - | chr2.4:21567593-21567612 | MS.gene026875:intron | 55.0% | |
GGTTCGTTGGCAAGCTTCTG+GGG | - | chr2.4:21567595-21567614 | MS.gene026875:intron | 55.0% | |
GTTCAAGACTGAGCACCTGG+CGG | + | chr2.4:21567148-21567167 | None:intergenic | 55.0% | |
! | CTGGGTGACAGTGATGACGA+TGG | - | chr2.4:21567864-21567883 | MS.gene026875:intron | 55.0% |
! | TCTGGAGTGGCAGAAACTGC+CGG | + | chr2.4:21567313-21567332 | None:intergenic | 55.0% |
! | TTTTCCTCTGGCACTGCGCA+AGG | + | chr2.4:21567643-21567662 | None:intergenic | 55.0% |
!! | TGTGTGGGTTTCAGGTTCGC+TGG | - | chr2.4:21566604-21566623 | MS.gene026875:intron | 55.0% |
AAGTCTCTTCCCTTGCCCGC+AGG | - | chr2.4:21567529-21567548 | MS.gene026875:intron | 60.0% | |
TCTGGCACTGCGCAAGGCTT+GGG | + | chr2.4:21567637-21567656 | None:intergenic | 60.0% | |
CAAGCCTTGCGCAGTGCCAG+AGG | - | chr2.4:21567636-21567655 | MS.gene026875:intron | 65.0% | |
CTCTGGCACTGCGCAAGGCT+TGG | + | chr2.4:21567638-21567657 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 21564512 | 21568364 | 21564512 | ID=MS.gene026875 |
chr2.4 | mRNA | 21564512 | 21568364 | 21564512 | ID=MS.gene026875.t1;Parent=MS.gene026875 |
chr2.4 | exon | 21568309 | 21568364 | 21568309 | ID=MS.gene026875.t1.exon1;Parent=MS.gene026875.t1 |
chr2.4 | CDS | 21568309 | 21568364 | 21568309 | ID=cds.MS.gene026875.t1;Parent=MS.gene026875.t1 |
chr2.4 | exon | 21568054 | 21568178 | 21568054 | ID=MS.gene026875.t1.exon2;Parent=MS.gene026875.t1 |
chr2.4 | CDS | 21568054 | 21568178 | 21568054 | ID=cds.MS.gene026875.t1;Parent=MS.gene026875.t1 |
chr2.4 | exon | 21566918 | 21567077 | 21566918 | ID=MS.gene026875.t1.exon3;Parent=MS.gene026875.t1 |
chr2.4 | CDS | 21566918 | 21567077 | 21566918 | ID=cds.MS.gene026875.t1;Parent=MS.gene026875.t1 |
chr2.4 | exon | 21565188 | 21565624 | 21565188 | ID=MS.gene026875.t1.exon4;Parent=MS.gene026875.t1 |
chr2.4 | CDS | 21565188 | 21565624 | 21565188 | ID=cds.MS.gene026875.t1;Parent=MS.gene026875.t1 |
chr2.4 | exon | 21564512 | 21565053 | 21564512 | ID=MS.gene026875.t1.exon5;Parent=MS.gene026875.t1 |
chr2.4 | CDS | 21564512 | 21565053 | 21564512 | ID=cds.MS.gene026875.t1;Parent=MS.gene026875.t1 |
Gene Sequence |
Protein sequence |