AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026877

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026877.t1 MTR_2g075820 97.533 527 13 0 1 527 1 527 0.0 1042
MS.gene026877.t1 MTR_2g075820 97.343 527 13 1 1 527 1 526 0.0 1036
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026877.t1 AT1G78650 45.037 544 244 14 1 525 1 508 7.89e-121 365

Find 104 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATTCGATTTCGTGAATT+AGG 0.080211 2.2:+17894644 None:intergenic
GAGGTTCGTTGGCAAGCTTC+TGG 0.168208 2.2:-17891388 MS.gene026877:CDS
TCCTTATTTACACAAATTTC+TGG 0.169560 2.2:+17890771 None:intergenic
CTCTGGCACTGCGCAAGGCT+TGG 0.218626 2.2:+17891346 None:intergenic
CCTTCAGAAGTTGTTGAAAA+TGG 0.223428 2.2:-17891164 MS.gene026877:intron
GTATCCTTATCATCTTTCTT+TGG 0.258986 2.2:+17890392 None:intergenic
CTGATAACTGATAAATCTTT+TGG 0.274120 2.2:+17890846 None:intergenic
GATAAAAGTGGCTCTGTTAA+TGG 0.294110 2.2:-17891410 MS.gene026877:CDS
TGTTATATGTAGGTTGCTTC+AGG 0.309652 2.2:-17894296 MS.gene026877:intron
TCCAGAAATTTGTGTAAATA+AGG 0.325298 2.2:-17890772 MS.gene026877:CDS
GTGAATTAGGGATAGGGTTT+CGG 0.334535 2.2:+17894657 None:intergenic
TCTGGCACTGCGCAAGGCTT+GGG 0.341878 2.2:+17891347 None:intergenic
TCCCAAGCAATTATCAGCTT+TGG 0.343926 2.2:+17893054 None:intergenic
AGATTCGATTTCGTGAATTA+GGG 0.347776 2.2:+17894645 None:intergenic
TCTTTAGATGACAGTTTACT+AGG 0.350822 2.2:+17890987 None:intergenic
TACCATGTAAGGCTTGTTAC+TGG 0.354891 2.2:-17894196 MS.gene026877:CDS
CAAAGCACAGCTGCATCCTT+TGG 0.355427 2.2:+17893121 None:intergenic
TGAAATTAAGCCATTGGTTA+AGG 0.359015 2.2:-17890904 MS.gene026877:CDS
ATCAGCAAGTGCACAAGTAC+TGG 0.359563 2.2:-17890828 MS.gene026877:CDS
CTTCAGTAACTGAAGTAGTC+TGG 0.361033 2.2:-17890433 MS.gene026877:intron
TATCATCAAATGAAGCAAAA+AGG 0.364120 2.2:-17894436 MS.gene026877:intron
CTGCTTCATGAGCACAAGTT+TGG 0.365644 2.2:+17891141 None:intergenic
CACTAACCCGTTAACAGCTT+TGG 0.369733 2.2:+17890322 None:intergenic
TGGTGTATGCTTTGTCTGGC+TGG 0.371747 2.2:-17894240 MS.gene026877:CDS
GAAAGAATATTGCCCTGTTT+CGG 0.377321 2.2:+17889769 None:intergenic
GCTGGTAGCTTCTTAGTTGC+CGG 0.379978 2.2:+17889847 None:intergenic
AAACATAAAGGATCCGAAAC+AGG 0.382350 2.2:-17889782 MS.gene026877:CDS
ACCAATGGCTTAATTTCAAC+CGG 0.383656 2.2:+17890909 None:intergenic
GTTACTGGGACAATGCTTGC+AGG 0.384169 2.2:-17894181 MS.gene026877:intron
AGGTTCGTTGGCAAGCTTCT+GGG 0.384533 2.2:-17891387 MS.gene026877:CDS
CAAAGGATGCAGCTGTGCTT+TGG 0.395728 2.2:-17893120 MS.gene026877:CDS
TGAACAACATTACTCTTTGT+TGG 0.409982 2.2:+17891623 None:intergenic
TTCCAAAGCTGATAATTGCT+TGG 0.418548 2.2:-17893056 MS.gene026877:CDS
GAAGTGGTGTATGCTTTGTC+TGG 0.418622 2.2:-17894244 MS.gene026877:CDS
TCTTCCTCGTTCATCAATCC+TGG 0.420011 2.2:+17890695 None:intergenic
CCTGTTGGATGATCTTCTTA+AGG 0.423040 2.2:+17891079 None:intergenic
TCCAAAGCTGATAATTGCTT+GGG 0.428396 2.2:-17893055 MS.gene026877:CDS
AGTAAAATCTGTAGTAGGCT+TGG 0.430762 2.2:-17891648 MS.gene026877:CDS
CGATTTCGTGAATTAGGGAT+AGG 0.433982 2.2:+17894650 None:intergenic
TTGTGCTCATGAAGCAGTAC+TGG 0.437428 2.2:-17891135 MS.gene026877:CDS
ACATCTACCAAAGCTGTTAA+CGG 0.446705 2.2:-17890329 MS.gene026877:CDS
GTAAAATCTGTAGTAGGCTT+GGG 0.450654 2.2:-17891647 MS.gene026877:CDS
CATCTACCAAAGCTGTTAAC+GGG 0.457690 2.2:-17890328 MS.gene026877:intron
ACCGGTTGAAATTAAGCCAT+TGG 0.457997 2.2:-17890910 MS.gene026877:CDS
CCAGTAGTATTTGATGTAGC+TGG 0.458491 2.2:+17889829 None:intergenic
ATAATTGCTTGGGAGACAAT+AGG 0.464445 2.2:-17893045 MS.gene026877:intron
GATCATCCAACAGGAAAAGA+AGG 0.466706 2.2:-17891070 MS.gene026877:CDS
CCAGAAGTAAAATCTGTAGT+AGG 0.467548 2.2:-17891653 MS.gene026877:CDS
CAAGAAAGCAGGAAACATAA+AGG 0.467823 2.2:-17889794 MS.gene026877:CDS
GTATTCCTAGCTACCATGTA+AGG 0.471927 2.2:-17894207 MS.gene026877:CDS
AGAGCCAAAGAAAGATGATA+AGG 0.473200 2.2:-17890396 MS.gene026877:CDS
CCAGCTACATCAAATACTAC+TGG 0.479108 2.2:-17889829 MS.gene026877:CDS
AAGGAACGAGGATGGACAAC+CGG 0.480561 2.2:-17891690 MS.gene026877:CDS
TTTCTCCTCTTAGGTGAACC+TGG 0.487423 2.2:+17890729 None:intergenic
CTCTGTTAATGGAGGTTCGT+TGG 0.494085 2.2:-17891399 MS.gene026877:CDS
CCTTAAGAAGATCATCCAAC+AGG 0.498177 2.2:-17891079 MS.gene026877:CDS
GAAGCACAGGAAGAGTTTGA+TGG 0.504579 2.2:-17893184 MS.gene026877:CDS
TTCAGTAACTGAAGTAGTCT+GGG 0.507974 2.2:-17890432 MS.gene026877:intron
TCTCTCCAGGTTCACCTAAG+AGG 0.514966 2.2:-17890734 MS.gene026877:CDS
AGCAATGGTACAGGAAATGC+AGG 0.517649 2.2:-17891515 MS.gene026877:CDS
AACATGATTTCAAAACCTGC+AGG 0.524551 2.2:-17891314 MS.gene026877:intron
AGAGGAGGAAGCAAGAAAGC+AGG 0.527546 2.2:-17889805 MS.gene026877:CDS
ACTCTTTCTTCCTTAACCAA+TGG 0.531169 2.2:+17890894 None:intergenic
GATTTCGTGAATTAGGGATA+GGG 0.531861 2.2:+17894651 None:intergenic
GGTTCGTTGGCAAGCTTCTG+GGG 0.540265 2.2:-17891386 MS.gene026877:CDS
GGAGAAAAGTGATGAAGACC+AGG 0.540800 2.2:-17890713 MS.gene026877:CDS
GACAGTTTACTAGGGACCTC+AGG 0.543644 2.2:+17890996 None:intergenic
ACAAGCCTTACATGGTAGCT+AGG 0.543674 2.2:+17894202 None:intergenic
AGGGTTTCGGTGTTCGACAT+CGG 0.547592 2.2:+17894670 None:intergenic
TCTGGAGTGGCAGAAACTGC+CGG 0.547602 2.2:+17891671 None:intergenic
AATTTCAGGTTTCATACAAG+TGG 0.549313 2.2:-17894478 MS.gene026877:intron
AAGAGTGAAAGCAATGGTAC+AGG 0.550651 2.2:-17891524 MS.gene026877:CDS
TCATTGCATTTCCAGTGCAC+CGG 0.551186 2.2:-17889866 MS.gene026877:intron
ACATCAAATACTACTGGAAG+AGG 0.555136 2.2:-17889823 MS.gene026877:CDS
AAGTCTCTTCCCTTGCCCGC+AGG 0.555927 2.2:-17891452 MS.gene026877:CDS
TAACTGAAGTAGTCTGGGAG+GGG 0.560193 2.2:-17890427 MS.gene026877:CDS
CTTTAGATGACAGTTTACTA+GGG 0.562262 2.2:+17890988 None:intergenic
ACCATGTAAGGCTTGTTACT+GGG 0.562390 2.2:-17894195 MS.gene026877:CDS
AAGCACAGGAAGAGTTTGAT+GGG 0.563128 2.2:-17893183 MS.gene026877:CDS
TGATCTCAAAACACAGAATG+TGG 0.563793 2.2:-17891558 MS.gene026877:CDS
TACAACTAAGAAAGCTGATA+CGG 0.567031 2.2:-17890372 MS.gene026877:CDS
TCCCAGTAACAAGCCTTACA+TGG 0.567820 2.2:+17894194 None:intergenic
TAGCTTGCACACTATATACC+TGG 0.568621 2.2:+17893149 None:intergenic
TGATGGGAAATGCTCAGTCC+AGG 0.568705 2.2:-17893167 MS.gene026877:CDS
AACTGAAGTAGTCTGGGAGG+GGG 0.575395 2.2:-17890426 MS.gene026877:CDS
CAAGCCTTGCGCAGTGCCAG+AGG 0.577317 2.2:-17891345 MS.gene026877:CDS
TCAGCAAGTGCACAAGTACT+GGG 0.578189 2.2:-17890827 MS.gene026877:CDS
ACATGAGGATGGGTTGGAAG+TGG 0.582631 2.2:-17894260 MS.gene026877:CDS
AAAGGACAAGCTGATAAAAG+TGG 0.583030 2.2:-17891422 MS.gene026877:CDS
ATTGATGAACGAGGAAGAGA+AGG 0.588225 2.2:-17890690 MS.gene026877:intron
GTAACTGAAGTAGTCTGGGA+GGG 0.592954 2.2:-17890428 MS.gene026877:CDS
CGTCTCAGATCAAATTCAAG+TGG 0.595937 2.2:-17894620 MS.gene026877:intron
AACATAAAGGATCCGAAACA+GGG 0.599044 2.2:-17889781 MS.gene026877:CDS
TCAAATACTACTGGAAGAGG+AGG 0.613938 2.2:-17889820 MS.gene026877:CDS
ATCATCCAACAGGAAAAGAA+GGG 0.618627 2.2:-17891069 MS.gene026877:CDS
TGTGCTCATGAAGCAGTACT+GGG 0.619552 2.2:-17891134 MS.gene026877:CDS
TGTGCAAGCTAGTATTCCAA+AGG 0.641371 2.2:-17893137 MS.gene026877:CDS
AAAAGTGGCTCTGTTAATGG+AGG 0.643109 2.2:-17891407 MS.gene026877:CDS
GATGTCAAGAGTGAAAGCAA+TGG 0.672437 2.2:-17891530 MS.gene026877:CDS
TGATACGGTTGCAAAGAAAG+CGG 0.688933 2.2:-17890357 MS.gene026877:CDS
AGTAACTGAAGTAGTCTGGG+AGG 0.694022 2.2:-17890429 MS.gene026877:CDS
CATCAGTTTAGCATCACCTG+AGG 0.714142 2.2:-17891012 MS.gene026877:CDS
AAGACCAGGATTGATGAACG+AGG 0.744480 2.2:-17890699 MS.gene026877:CDS
CTGGGTGACAGTGATGACGA+TGG 0.808132 2.2:-17891116 MS.gene026877:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTAGATTGATTATTT+TGG + chr2.2:17892453-17892472 None:intergenic 10.0%
!!! GGAATTTTTTTTTTTTTTTT+TGG - chr2.2:17892287-17892306 MS.gene026877:intron 10.0%
!! AATTAATATTATAGTTGTAG+CGG - chr2.2:17890281-17890300 MS.gene026877:intron 15.0%
!! ATGTTCAGTTAAAAAAAAAT+TGG - chr2.2:17891100-17891119 MS.gene026877:CDS 15.0%
!! GATATAATATAATATGATTC+TGG - chr2.2:17892144-17892163 MS.gene026877:intron 15.0%
!! TAATTATGTCAGTAAAATAT+TGG + chr2.2:17893227-17893246 None:intergenic 15.0%
!!! AACAAATTTAGGATAAAAAA+AGG + chr2.2:17889895-17889914 None:intergenic 15.0%
!!! AGTATTTTAGTTTTTTGATA+AGG - chr2.2:17891421-17891440 MS.gene026877:CDS 15.0%
!!! TAATTTTTATCTCATAAACT+TGG - chr2.2:17890732-17890751 MS.gene026877:CDS 15.0%
!!! TATTAGTCTATTAGAATATA+TGG - chr2.2:17891464-17891483 MS.gene026877:CDS 15.0%
!!! TTGAAAATTTTGTTATATGT+AGG - chr2.2:17890108-17890127 MS.gene026877:intron 15.0%
!!! TTTTTTTATGAACACTAAAT+TGG + chr2.2:17891988-17892007 None:intergenic 15.0%
!! AACTAACTCAATTTAGATTT+AGG - chr2.2:17891038-17891057 MS.gene026877:CDS 20.0%
!! AATCTAATATTTCAATCTTC+TGG - chr2.2:17892461-17892480 MS.gene026877:intron 20.0%
!! ACATGAAAGAAACATTATTA+GGG + chr2.2:17891861-17891880 None:intergenic 20.0%
!! ACTTATATATGCATGATTAT+TGG - chr2.2:17893879-17893898 MS.gene026877:intron 20.0%
!! AGGGAAAAAAATACAATTAA+TGG + chr2.2:17890646-17890665 None:intergenic 20.0%
!! AGTTAAAACAATGCATTTAA+GGG + chr2.2:17893752-17893771 None:intergenic 20.0%
!! ATATATTCAATAAACCTGAA+TGG + chr2.2:17893133-17893152 None:intergenic 20.0%
!! CATATTATAGTCATACATAA+AGG + chr2.2:17893813-17893832 None:intergenic 20.0%
!! CTTATATATGCATGATTATT+GGG - chr2.2:17893880-17893899 MS.gene026877:intron 20.0%
!! TCATGAAATCAAACAAATTT+AGG + chr2.2:17889906-17889925 None:intergenic 20.0%
!! TCTGATATTAAAATGTAGAA+TGG - chr2.2:17892122-17892141 MS.gene026877:intron 20.0%
!!! AGTGAATGAAAATTTTGATA+AGG + chr2.2:17893910-17893929 None:intergenic 20.0%
!!! ATGAAAATTGGTTTAATTTC+AGG - chr2.2:17889922-17889941 MS.gene026877:intron 20.0%
!!! CATTTTAATATCATGAAATC+AGG + chr2.2:17894290-17894309 None:intergenic 20.0%
!!! GAATTGAATGAATGAAATTT+TGG - chr2.2:17894129-17894148 MS.gene026877:intron 20.0%
!!! TTGTTTGATTTCATGAAAAT+TGG - chr2.2:17889910-17889929 MS.gene026877:intron 20.0%
! AAATAAGGATAGTGCAAAAA+AGG - chr2.2:17893657-17893676 MS.gene026877:intron 25.0%
! AACTCAATTTAGATTTAGGT+GGG - chr2.2:17891042-17891061 MS.gene026877:CDS 25.0%
! ATAAGAAAATAGCACAACAA+GGG + chr2.2:17892078-17892097 None:intergenic 25.0%
! CACATGAAAGAAACATTATT+AGG + chr2.2:17891862-17891881 None:intergenic 25.0%
! CTTCATTAATGAAGTTATTG+AGG + chr2.2:17892519-17892538 None:intergenic 25.0%
! GAGTTAAAACAATGCATTTA+AGG + chr2.2:17893753-17893772 None:intergenic 25.0%
! GATAATTTGAGTAAATGTCT+TGG - chr2.2:17890373-17890392 MS.gene026877:CDS 25.0%
! TAACTCAATTTAGATTTAGG+TGG - chr2.2:17891041-17891060 MS.gene026877:CDS 25.0%
! TATAACTATAATCATCGAGA+AGG + chr2.2:17893176-17893195 None:intergenic 25.0%
! TATCATCAAATGAAGCAAAA+AGG - chr2.2:17889978-17889997 MS.gene026877:intron 25.0%
! TATGAGCAATTCATGAATAT+AGG - chr2.2:17894323-17894342 MS.gene026877:intron 25.0%
! TCCAGAAATTTGTGTAAATA+AGG - chr2.2:17893642-17893661 MS.gene026877:intron 25.0%
! TTGAAAACAAACATAACTGA+TGG - chr2.2:17890833-17890852 MS.gene026877:CDS 25.0%
!! ATAACTGATAAATCTTTTGG+TGG + chr2.2:17893568-17893587 None:intergenic 25.0%
!! CTCTAATTCTTTTGTACAAA+GGG - chr2.2:17892697-17892716 MS.gene026877:intron 25.0%
!! CTGATAACTGATAAATCTTT+TGG + chr2.2:17893571-17893590 None:intergenic 25.0%
!! GAACTGACAAATTTTCTTTT+TGG - chr2.2:17891602-17891621 MS.gene026877:CDS 25.0%
!! GTACTTTCAATCTGATTTTA+TGG - chr2.2:17894434-17894453 MS.gene026877:intron 25.0%
!! TCCTTATTTACACAAATTTC+TGG + chr2.2:17893646-17893665 None:intergenic 25.0%
!! TCTCTAATTCTTTTGTACAA+AGG - chr2.2:17892696-17892715 MS.gene026877:intron 25.0%
!!! AAGGCTTTGAAATTGAAAAT+TGG + chr2.2:17889876-17889895 None:intergenic 25.0%
!!! AGGCTTTGAAATTGAAAATT+GGG + chr2.2:17889875-17889894 None:intergenic 25.0%
!!! ATTGATGGGTTTTTTTACTA+TGG - chr2.2:17890067-17890086 MS.gene026877:intron 25.0%
!!! GAAATTTTTTCTCAACTCAT+TGG + chr2.2:17891138-17891157 None:intergenic 25.0%
!!! TGACTTTTTGTCATTTTGTT+CGG + chr2.2:17893455-17893474 None:intergenic 25.0%
!!! TGCTTTGAATTTTGATTTAC+CGG - chr2.2:17893486-17893505 MS.gene026877:intron 25.0%
!!! TTTAGTTTTATGCAGTTGAT+GGG - chr2.2:17890008-17890027 MS.gene026877:intron 25.0%
!!! TTTTAGTTTTATGCAGTTGA+TGG - chr2.2:17890007-17890026 MS.gene026877:intron 25.0%
AACGTTACCCAAAAAATTTC+TGG + chr2.2:17891684-17891703 None:intergenic 30.0%
AAGCAAGTCATGATATTAGT+AGG - chr2.2:17891508-17891527 MS.gene026877:CDS 30.0%
AATTGACCATACCAAAATGA+TGG + chr2.2:17890991-17891010 None:intergenic 30.0%
AGAATCACTGTATACTTCAA+GGG + chr2.2:17894199-17894218 None:intergenic 30.0%
AGATTCGATTTCGTGAATTA+GGG + chr2.2:17889772-17889791 None:intergenic 30.0%
AGTATACAGTGATTCTCATT+AGG - chr2.2:17894203-17894222 MS.gene026877:CDS 30.0%
ATAATATGGAAGAAAGAACC+CGG + chr2.2:17893777-17893796 None:intergenic 30.0%
ATCAAATGAAGCAAAAAGGT+AGG - chr2.2:17889982-17890001 MS.gene026877:intron 30.0%
ATTGACCATACCAAAATGAT+GGG + chr2.2:17890990-17891009 None:intergenic 30.0%
CTATTACATGTTCCAAAACT+TGG - chr2.2:17891826-17891845 MS.gene026877:intron 30.0%
CTTTAGATGACAGTTTACTA+GGG + chr2.2:17893429-17893448 None:intergenic 30.0%
CTTTCATGTGACCAAAAAAT+GGG - chr2.2:17891872-17891891 MS.gene026877:intron 30.0%
GAAAAAATTTCATGTCACTC+TGG - chr2.2:17891147-17891166 MS.gene026877:CDS 30.0%
GATAAGAAAATAGCACAACA+AGG + chr2.2:17892079-17892098 None:intergenic 30.0%
GTAATAGTGATAGATTGTCT+TGG + chr2.2:17891813-17891832 None:intergenic 30.0%
GTATCCTTATCATCTTTCTT+TGG + chr2.2:17894025-17894044 None:intergenic 30.0%
GTGACTTCTACACTATAATA+TGG + chr2.2:17893791-17893810 None:intergenic 30.0%
TAAGAAAATAGCACAACAAG+GGG + chr2.2:17892077-17892096 None:intergenic 30.0%
TACAACTAAGAAAGCTGATA+CGG - chr2.2:17894042-17894061 MS.gene026877:intron 30.0%
TATAGGCAGTTCATGAATAT+AGG - chr2.2:17894340-17894359 MS.gene026877:intron 30.0%
TATTAGACATGCCTTCAATT+AGG - chr2.2:17890578-17890597 MS.gene026877:intron 30.0%
TATTTCCTAAAGTTGCATCA+GGG - chr2.2:17894250-17894269 MS.gene026877:CDS 30.0%
TCAAATGAAGCAAAAAGGTA+GGG - chr2.2:17889983-17890002 MS.gene026877:intron 30.0%
TCTTTAGATGACAGTTTACT+AGG + chr2.2:17893430-17893449 None:intergenic 30.0%
TCTTTCATGTGACCAAAAAA+TGG - chr2.2:17891871-17891890 MS.gene026877:intron 30.0%
TGAAAGAAACATTATTAGGG+AGG + chr2.2:17891858-17891877 None:intergenic 30.0%
TGAACAACATTACTCTTTGT+TGG + chr2.2:17892794-17892813 None:intergenic 30.0%
TGAGTTTATGCTTGTTTGTT+TGG - chr2.2:17890783-17890802 MS.gene026877:CDS 30.0%
TGTCAGTGTTGTATTATTGT+CGG - chr2.2:17890554-17890573 MS.gene026877:intron 30.0%
TTATTTCCTAAAGTTGCATC+AGG - chr2.2:17894249-17894268 MS.gene026877:CDS 30.0%
TTCATGTCATGGTTTCATAT+AGG + chr2.2:17890947-17890966 None:intergenic 30.0%
TTGTTGAAAAACATGAGGAT+GGG - chr2.2:17890144-17890163 MS.gene026877:intron 30.0%
TTTAAGTGTCAGTGCTATAT+AGG - chr2.2:17890433-17890452 MS.gene026877:intron 30.0%
TTTCTGTGAATTGCTTTAGT+AGG - chr2.2:17891702-17891721 MS.gene026877:CDS 30.0%
TTTGTAGCCAGAAAAAAAAG+TGG - chr2.2:17892376-17892395 MS.gene026877:intron 30.0%
TTTGTTGAAAAACATGAGGA+TGG - chr2.2:17890143-17890162 MS.gene026877:intron 30.0%
! AAATCAGATTGAAAGTACAG+TGG + chr2.2:17894432-17894451 None:intergenic 30.0%
! AATCAGATTGAAAGTACAGT+GGG + chr2.2:17894431-17894450 None:intergenic 30.0%
! ATCATGTTACTATTTTCCTC+TGG + chr2.2:17893088-17893107 None:intergenic 30.0%
! CTTTTGTACAAAGGGTAAAA+AGG - chr2.2:17892705-17892724 MS.gene026877:intron 30.0%
! GAATTGTGTGCTATGTTTTT+AGG + chr2.2:17892824-17892843 None:intergenic 30.0%
! TGAAATTAAGCCATTGGTTA+AGG - chr2.2:17893510-17893529 MS.gene026877:intron 30.0%
!! AATTTCAGGTTTCATACAAG+TGG - chr2.2:17889936-17889955 MS.gene026877:intron 30.0%
!! ACTAATATCATGACTTGCTT+GGG + chr2.2:17891508-17891527 None:intergenic 30.0%
!! GCTTTGAAATTGAAAATTGG+GGG + chr2.2:17889873-17889892 None:intergenic 30.0%
!! GGCTTTGAAATTGAAAATTG+GGG + chr2.2:17889874-17889893 None:intergenic 30.0%
!! GTGTTTTCTTCATAGTTTTG+TGG - chr2.2:17890756-17890775 MS.gene026877:CDS 30.0%
!! TACTAATATCATGACTTGCT+TGG + chr2.2:17891509-17891528 None:intergenic 30.0%
!! TGTTGCTTTGTGAAATTGAT+GGG - chr2.2:17890053-17890072 MS.gene026877:intron 30.0%
!! TTGTTGCTTTGTGAAATTGA+TGG - chr2.2:17890052-17890071 MS.gene026877:intron 30.0%
!!! AATGCATTGTTTTAACTCAC+CGG - chr2.2:17893755-17893774 MS.gene026877:intron 30.0%
!!! ACAAGAGACCAGAAATTTTT+TGG - chr2.2:17891673-17891692 MS.gene026877:CDS 30.0%
!!! CAAGAGACCAGAAATTTTTT+GGG - chr2.2:17891674-17891693 MS.gene026877:CDS 30.0%
AAACATAAAGGATCCGAAAC+AGG - chr2.2:17894632-17894651 MS.gene026877:CDS 35.0%
AAAGGACAAGCTGATAAAAG+TGG - chr2.2:17892992-17893011 MS.gene026877:intron 35.0%
AACATAAAGGATCCGAAACA+GGG - chr2.2:17894633-17894652 MS.gene026877:CDS 35.0%
AACATGATTTCAAAACCTGC+AGG - chr2.2:17893100-17893119 MS.gene026877:CDS 35.0%
AACCATGACATGAACCAATT+TGG - chr2.2:17890953-17890972 MS.gene026877:CDS 35.0%
ACATCAAATACTACTGGAAG+AGG - chr2.2:17894591-17894610 MS.gene026877:intron 35.0%
ACATCTACCAAAGCTGTTAA+CGG - chr2.2:17894085-17894104 MS.gene026877:intron 35.0%
ACCAATGGCTTAATTTCAAC+CGG + chr2.2:17893508-17893527 None:intergenic 35.0%
ACTCTTTCTTCCTTAACCAA+TGG + chr2.2:17893523-17893542 None:intergenic 35.0%
AGAGCCAAAGAAAGATGATA+AGG - chr2.2:17894018-17894037 MS.gene026877:intron 35.0%
AGTAAAATCTGTAGTAGGCT+TGG - chr2.2:17892766-17892785 MS.gene026877:intron 35.0%
ATAATTGCTTGGGAGACAAT+AGG - chr2.2:17891369-17891388 MS.gene026877:CDS 35.0%
ATCATCCAACAGGAAAAGAA+GGG - chr2.2:17893345-17893364 MS.gene026877:intron 35.0%
ATGTCTACAAACTTCGAAGT+TGG + chr2.2:17894407-17894426 None:intergenic 35.0%
ATTAGTGTTGTAATCGCCAT+TGG + chr2.2:17891637-17891656 None:intergenic 35.0%
ATTTGTCAGTTCAGTATGAG+TGG + chr2.2:17891594-17891613 None:intergenic 35.0%
CAAGAAAGCAGGAAACATAA+AGG - chr2.2:17894620-17894639 MS.gene026877:intron 35.0%
CATATTCCAAAAGCAGAAGA+TGG + chr2.2:17891939-17891958 None:intergenic 35.0%
CCAGAAGTAAAATCTGTAGT+AGG - chr2.2:17892761-17892780 MS.gene026877:intron 35.0%
CCTACTTCCTAATGTTTGTA+AGG + chr2.2:17891177-17891196 None:intergenic 35.0%
CCTGTACAAAAAGATGCTAA+AGG + chr2.2:17890895-17890914 None:intergenic 35.0%
CCTTACAAACATTAGGAAGT+AGG - chr2.2:17891174-17891193 MS.gene026877:intron 35.0%
CCTTCAGAAGTTGTTGAAAA+TGG - chr2.2:17893250-17893269 MS.gene026877:intron 35.0%
CTGTCTTATATGTGTCTTTG+CGG - chr2.2:17892624-17892643 MS.gene026877:intron 35.0%
GAAAGAATATTGCCCTGTTT+CGG + chr2.2:17894648-17894667 None:intergenic 35.0%
GAGAATCACTGTATACTTCA+AGG + chr2.2:17894200-17894219 None:intergenic 35.0%
GAGATTCGATTTCGTGAATT+AGG + chr2.2:17889773-17889792 None:intergenic 35.0%
GATTTCGTGAATTAGGGATA+GGG + chr2.2:17889766-17889785 None:intergenic 35.0%
GGAAACTGAAGAGATTTGAT+TGG + chr2.2:17889837-17889856 None:intergenic 35.0%
GGAAGCAATCAATACTTCAA+AGG - chr2.2:17894150-17894169 MS.gene026877:intron 35.0%
GTAAAATCTGTAGTAGGCTT+GGG - chr2.2:17892767-17892786 MS.gene026877:intron 35.0%
TCCAAAGCTGATAATTGCTT+GGG - chr2.2:17891359-17891378 MS.gene026877:CDS 35.0%
TGAACTATGAAGGTTAGACA+CGG - chr2.2:17890310-17890329 MS.gene026877:intron 35.0%
TGATCTCAAAACACAGAATG+TGG - chr2.2:17892856-17892875 MS.gene026877:intron 35.0%
TGTACAGGAACTGAAGTAAT+TGG - chr2.2:17890907-17890926 MS.gene026877:CDS 35.0%
TGTTATATGTAGGTTGCTTC+AGG - chr2.2:17890118-17890137 MS.gene026877:intron 35.0%
TTCAGTAACTGAAGTAGTCT+GGG - chr2.2:17893982-17894001 MS.gene026877:intron 35.0%
TTCCAAAGCTGATAATTGCT+TGG - chr2.2:17891358-17891377 MS.gene026877:CDS 35.0%
! AAGAATTTTCTTTTACCGCC+AGG - chr2.2:17892563-17892582 MS.gene026877:intron 35.0%
! ACAAACATAACTGATGGTGA+TGG - chr2.2:17890839-17890858 MS.gene026877:CDS 35.0%
! ACAGTGAAGTATTAAGCAGT+AGG + chr2.2:17890666-17890685 None:intergenic 35.0%
! ATCAGATTGAAAGTACAGTG+GGG + chr2.2:17894430-17894449 None:intergenic 35.0%
! CAGTGAAGTATTAAGCAGTA+GGG + chr2.2:17890665-17890684 None:intergenic 35.0%
! CCATTTTCAACAACTTCTGA+AGG + chr2.2:17893253-17893272 None:intergenic 35.0%
! CCTACTACAGATTTTACTTC+TGG + chr2.2:17892764-17892783 None:intergenic 35.0%
! CCTTTAGCATCTTTTTGTAC+AGG - chr2.2:17890892-17890911 MS.gene026877:CDS 35.0%
! GACTTTTCTTTCTCTGCAAT+AGG + chr2.2:17892947-17892966 None:intergenic 35.0%
! GATAAAAGTGGCTCTGTTAA+TGG - chr2.2:17893004-17893023 MS.gene026877:intron 35.0%
! GGCTAACTAGCATATTTTTC+AGG - chr2.2:17892663-17892682 MS.gene026877:intron 35.0%
! GTTTTTCTGACCCATCATTT+TGG - chr2.2:17890977-17890996 MS.gene026877:CDS 35.0%
!! AAAGCTGCTTTGAAAAGTAG+GGG - chr2.2:17892266-17892285 MS.gene026877:intron 35.0%
!! AGAAAGCTGCTTTGAAAAGT+AGG - chr2.2:17892264-17892283 MS.gene026877:intron 35.0%
!! CACTGATTCAGAAGCTTTAT+TGG + chr2.2:17892336-17892355 None:intergenic 35.0%
!! CTAATATCATGACTTGCTTG+GGG + chr2.2:17891507-17891526 None:intergenic 35.0%
!! CTGATAAATCTTTTGGTGGT+TGG + chr2.2:17893564-17893583 None:intergenic 35.0%
!! GAAAGCTGCTTTGAAAAGTA+GGG - chr2.2:17892265-17892284 MS.gene026877:intron 35.0%
!! GGAGTTTGTTGAAAAACATG+AGG - chr2.2:17890139-17890158 MS.gene026877:intron 35.0%
!! TAAATGTCTTGGTGTCGTAT+TGG - chr2.2:17890384-17890403 MS.gene026877:CDS 35.0%
!! TAATATCATGACTTGCTTGG+GGG + chr2.2:17891506-17891525 None:intergenic 35.0%
!! TACAGATTTTACTTCTGGAG+TGG + chr2.2:17892759-17892778 None:intergenic 35.0%
!! TCTTTCCATTGCTTTTGTGT+GGG - chr2.2:17892021-17892040 MS.gene026877:intron 35.0%
!! TTCATCACTTTTCTCCTCTT+AGG + chr2.2:17893697-17893716 None:intergenic 35.0%
!!! AGCATATTTTTCAGGTTCTG+TGG - chr2.2:17892671-17892690 MS.gene026877:intron 35.0%
!!! ATGCATTGTTTTAACTCACC+GGG - chr2.2:17893756-17893775 MS.gene026877:intron 35.0%
!!! CAAACCACCACTTTTTTTTC+TGG + chr2.2:17892386-17892405 None:intergenic 35.0%
!!! CATTTTTTATGCAGAAGCAC+AGG - chr2.2:17891217-17891236 MS.gene026877:intron 35.0%
!!! GCATATTTTTCAGGTTCTGT+GGG - chr2.2:17892672-17892691 MS.gene026877:intron 35.0%
!!! TTGTGTGCTATGTTTTTAGG+AGG + chr2.2:17892821-17892840 None:intergenic 35.0%
!!! TTTTTGGTTCTCTTTGCCAA+TGG - chr2.2:17891618-17891637 MS.gene026877:CDS 35.0%
AAATATGCTAGTTAGCCACC+AGG + chr2.2:17892660-17892679 None:intergenic 40.0%
AAATTGGGGGAAGAGAAGTA+AGG + chr2.2:17889860-17889879 None:intergenic 40.0%
AAGAGTGAAAGCAATGGTAC+AGG - chr2.2:17892890-17892909 MS.gene026877:intron 40.0%
AAGCACAGGAAGAGTTTGAT+GGG - chr2.2:17891231-17891250 MS.gene026877:intron 40.0%
AATTGGGGGAAGAGAAGTAA+GGG + chr2.2:17889859-17889878 None:intergenic 40.0%
ACAAAGGGTAAAAAGGAACG+AGG - chr2.2:17892712-17892731 MS.gene026877:intron 40.0%
ACCGGTTGAAATTAAGCCAT+TGG - chr2.2:17893504-17893523 MS.gene026877:intron 40.0%
CATCTACCAAAGCTGTTAAC+GGG - chr2.2:17894086-17894105 MS.gene026877:intron 40.0%
CCAGCTACATCAAATACTAC+TGG - chr2.2:17894585-17894604 MS.gene026877:intron 40.0%
CCAGTAGTATTTGATGTAGC+TGG + chr2.2:17894588-17894607 None:intergenic 40.0%
CCTGTTGGATGATCTTCTTA+AGG + chr2.2:17893338-17893357 None:intergenic 40.0%
CCTTAAGAAGATCATCCAAC+AGG - chr2.2:17893335-17893354 MS.gene026877:intron 40.0%
CGATTTCGTGAATTAGGGAT+AGG + chr2.2:17889767-17889786 None:intergenic 40.0%
CGTCTCAGATCAAATTCAAG+TGG - chr2.2:17889794-17889813 MS.gene026877:CDS 40.0%
CTTCAGTAACTGAAGTAGTC+TGG - chr2.2:17893981-17894000 MS.gene026877:intron 40.0%
GAAATTCGAGAAACCAAACC+AGG - chr2.2:17891907-17891926 MS.gene026877:intron 40.0%
GACAATCAGCTAGTAAGAAG+GGG + chr2.2:17894376-17894395 None:intergenic 40.0%
GATCATCCAACAGGAAAAGA+AGG - chr2.2:17893344-17893363 MS.gene026877:intron 40.0%
GATGTCAAGAGTGAAAGCAA+TGG - chr2.2:17892884-17892903 MS.gene026877:intron 40.0%
GCGGCAATTATGAACTATGA+AGG - chr2.2:17890300-17890319 MS.gene026877:intron 40.0%
GGACAATCAGCTAGTAAGAA+GGG + chr2.2:17894377-17894396 None:intergenic 40.0%
GGGTCAGAAAAACACCAAAT+TGG + chr2.2:17890970-17890989 None:intergenic 40.0%
GTAGCCAGAAAAAAAAGTGG+TGG - chr2.2:17892379-17892398 MS.gene026877:intron 40.0%
GTATTCCTAGCTACCATGTA+AGG - chr2.2:17890207-17890226 MS.gene026877:intron 40.0%
GTGAATTAGGGATAGGGTTT+CGG + chr2.2:17889760-17889779 None:intergenic 40.0%
GTGCTCTATCATTCCAATAG+TGG + chr2.2:17891966-17891985 None:intergenic 40.0%
TACTAGCTGATTGTCCACTT+TGG - chr2.2:17894381-17894400 MS.gene026877:intron 40.0%
TCAAACCCTGATGCAACTTT+AGG + chr2.2:17894258-17894277 None:intergenic 40.0%
TCAAATACTACTGGAAGAGG+AGG - chr2.2:17894594-17894613 MS.gene026877:intron 40.0%
TCCCAAGCAATTATCAGCTT+TGG + chr2.2:17891363-17891382 None:intergenic 40.0%
TGAAAAACATGAGGATGGGT+TGG - chr2.2:17890148-17890167 MS.gene026877:intron 40.0%
TGAAACCCACACAAAAGCAA+TGG + chr2.2:17892029-17892048 None:intergenic 40.0%
TGATACGGTTGCAAAGAAAG+CGG - chr2.2:17894057-17894076 MS.gene026877:intron 40.0%
TGATTTCAAAACCTGCAGGT+TGG - chr2.2:17893104-17893123 MS.gene026877:CDS 40.0%
TGGAATATGCTCTCCACTAT+TGG - chr2.2:17891950-17891969 MS.gene026877:intron 40.0%
TGGACAATCAGCTAGTAAGA+AGG + chr2.2:17894378-17894397 None:intergenic 40.0%
TGTCAGTGCTATATAGGTAC+CGG - chr2.2:17890439-17890458 MS.gene026877:intron 40.0%
TGTGCAAGCTAGTATTCCAA+AGG - chr2.2:17891277-17891296 MS.gene026877:intron 40.0%
TGTTGTGCAATTACATGTCC+TGG + chr2.2:17892229-17892248 None:intergenic 40.0%
TTCCAAAAGCAGAAGATGGA+AGG + chr2.2:17891935-17891954 None:intergenic 40.0%
! AAAAGTGGCTCTGTTAATGG+AGG - chr2.2:17893007-17893026 MS.gene026877:intron 40.0%
! ATCCTTCCATCTTCTGCTTT+TGG - chr2.2:17891930-17891949 MS.gene026877:intron 40.0%
! ATGCCTTCAATTAGGAGTGT+TGG - chr2.2:17890586-17890605 MS.gene026877:intron 40.0%
! CACCAAATTGGTTCATGTCA+TGG + chr2.2:17890958-17890977 None:intergenic 40.0%
! GGGAGGAAAAAACCAAGTTT+TGG + chr2.2:17891841-17891860 None:intergenic 40.0%
! GGTTTGAGTGTCAAGCTTTT+GGG - chr2.2:17890804-17890823 MS.gene026877:CDS 40.0%
! GTTTGAGTGTCAAGCTTTTG+GGG - chr2.2:17890805-17890824 MS.gene026877:CDS 40.0%
! TAGCTTGCACACTATATACC+TGG + chr2.2:17891268-17891287 None:intergenic 40.0%
! TGGAGTGCCTTACAAACATT+AGG - chr2.2:17891167-17891186 MS.gene026877:intron 40.0%
! TGGTTTGAGTGTCAAGCTTT+TGG - chr2.2:17890803-17890822 MS.gene026877:CDS 40.0%
! TTGTCCTTTCTTTTTGCCTG+CGG + chr2.2:17892981-17893000 None:intergenic 40.0%
!! ACCATGTAAGGCTTGTTACT+GGG - chr2.2:17890219-17890238 MS.gene026877:intron 40.0%
!! ATTGCTTTTGTGTGGGTTTC+AGG - chr2.2:17892028-17892047 MS.gene026877:intron 40.0%
!! GTCGTATTGGTGTCAGATAT+CGG - chr2.2:17890397-17890416 MS.gene026877:CDS 40.0%
!! GTCTTTCCATTGCTTTTGTG+TGG - chr2.2:17892020-17892039 MS.gene026877:intron 40.0%
!! TACCATGTAAGGCTTGTTAC+TGG - chr2.2:17890218-17890237 MS.gene026877:intron 40.0%
!! TCGTATTGGTGTCAGATATC+GGG - chr2.2:17890398-17890417 MS.gene026877:CDS 40.0%
!! TCTGACCCATCATTTTGGTA+TGG - chr2.2:17890982-17891001 MS.gene026877:CDS 40.0%
!!! ACTGACACTGACCCATTTTT+TGG + chr2.2:17891886-17891905 None:intergenic 40.0%
!!! GTGCTATGTTTTTAGGAGGT+TGG + chr2.2:17892817-17892836 None:intergenic 40.0%
AACTTCGAAGTTGGCCAAAG+TGG + chr2.2:17894398-17894417 None:intergenic 45.0%
AAGACCAGGATTGATGAACG+AGG - chr2.2:17893715-17893734 MS.gene026877:intron 45.0%
AAGATGGAAGGATCCTGGTT+TGG + chr2.2:17891923-17891942 None:intergenic 45.0%
AATGTGTGATGCATCTCTCC+AGG - chr2.2:17892208-17892227 MS.gene026877:intron 45.0%
ACAAGCCTTACATGGTAGCT+AGG + chr2.2:17890215-17890234 None:intergenic 45.0%
AGCAATGGTACAGGAAATGC+AGG - chr2.2:17892899-17892918 MS.gene026877:intron 45.0%
AGGGTAAAAAGGAACGAGGA+TGG - chr2.2:17892716-17892735 MS.gene026877:intron 45.0%
AGTAACTGAAGTAGTCTGGG+AGG - chr2.2:17893985-17894004 MS.gene026877:intron 45.0%
AGTGCAAAAAAGGTCTCTCC+AGG - chr2.2:17893667-17893686 MS.gene026877:intron 45.0%
ATCAGCAAGTGCACAAGTAC+TGG - chr2.2:17893586-17893605 MS.gene026877:intron 45.0%
ATGAGTGGCATCAAATCTGC+TGG + chr2.2:17891579-17891598 None:intergenic 45.0%
ATTGGGGGAAGAGAAGTAAG+GGG + chr2.2:17889858-17889877 None:intergenic 45.0%
CACTAACCCGTTAACAGCTT+TGG + chr2.2:17894095-17894114 None:intergenic 45.0%
CATCAGTTTAGCATCACCTG+AGG - chr2.2:17893402-17893421 MS.gene026877:intron 45.0%
CTAGTTAGCCACCAGGAATT+AGG + chr2.2:17892653-17892672 None:intergenic 45.0%
CTCTGTTAATGGAGGTTCGT+TGG - chr2.2:17893015-17893034 MS.gene026877:intron 45.0%
CTGCTTCATGAGCACAAGTT+TGG + chr2.2:17893276-17893295 None:intergenic 45.0%
CTTTGCGGTTTCCTAATTCC+TGG - chr2.2:17892639-17892658 MS.gene026877:intron 45.0%
GAAGCACAGGAAGAGTTTGA+TGG - chr2.2:17891230-17891249 MS.gene026877:intron 45.0%
GAAGTGGTGTATGCTTTGTC+TGG - chr2.2:17890170-17890189 MS.gene026877:intron 45.0%
GCACCAACACTCCTAATTGA+AGG + chr2.2:17890592-17890611 None:intergenic 45.0%
GGAGAAAAGTGATGAAGACC+AGG - chr2.2:17893701-17893720 MS.gene026877:intron 45.0%
GTAACTGAAGTAGTCTGGGA+GGG - chr2.2:17893986-17894005 MS.gene026877:intron 45.0%
GTGTGTCTGTTTGACATGTC+CGG + chr2.2:17890461-17890480 None:intergenic 45.0%
TAACTGAAGTAGTCTGGGAG+GGG - chr2.2:17893987-17894006 MS.gene026877:intron 45.0%
TCAGCAAGTGCACAAGTACT+GGG - chr2.2:17893587-17893606 MS.gene026877:intron 45.0%
TCATTGCATTTCCAGTGCAC+CGG - chr2.2:17894548-17894567 MS.gene026877:intron 45.0%
TCCCAGTAACAAGCCTTACA+TGG + chr2.2:17890223-17890242 None:intergenic 45.0%
TCTTCCTCGTTCATCAATCC+TGG + chr2.2:17893722-17893741 None:intergenic 45.0%
TGTGCTCATGAAGCAGTACT+GGG - chr2.2:17893280-17893299 MS.gene026877:intron 45.0%
TTGCTTGGGAGACAATAGGT+AGG - chr2.2:17891373-17891392 MS.gene026877:CDS 45.0%
TTGTGCTCATGAAGCAGTAC+TGG - chr2.2:17893279-17893298 MS.gene026877:intron 45.0%
TTTCTCCTCTTAGGTGAACC+TGG + chr2.2:17893688-17893707 None:intergenic 45.0%
! GACAACCCTTCTTTTCCTGT+TGG + chr2.2:17893353-17893372 None:intergenic 45.0%
! TGTCCTTTCTTTTTGCCTGC+GGG + chr2.2:17892980-17892999 None:intergenic 45.0%
!! CAGTGTCGATGTATCAGTGT+CGG + chr2.2:17890351-17890370 None:intergenic 45.0%
!! TAATTATTGAATATATATTA+CGG + chr2.2:17891742-17891761 None:intergenic 5.0%
AACTGAAGTAGTCTGGGAGG+GGG - chr2.2:17893988-17894007 MS.gene026877:intron 50.0%
AAGGAACGAGGATGGACAAC+CGG - chr2.2:17892724-17892743 MS.gene026877:intron 50.0%
AAGGCTGCATGACTCCTTGT+TGG - chr2.2:17894169-17894188 MS.gene026877:intron 50.0%
ACTTCAAGGGACACCCAACA+AGG + chr2.2:17894186-17894205 None:intergenic 50.0%
AGAGGAGGAAGCAAGAAAGC+AGG - chr2.2:17894609-17894628 MS.gene026877:intron 50.0%
AGAGTTCAAGACTGAGCACC+TGG + chr2.2:17892584-17892603 None:intergenic 50.0%
AGCAGAAGATGGAAGGATCC+TGG + chr2.2:17891928-17891947 None:intergenic 50.0%
AGGCTGCATGACTCCTTGTT+GGG - chr2.2:17894170-17894189 MS.gene026877:intron 50.0%
AGGTTCGTTGGCAAGCTTCT+GGG - chr2.2:17893027-17893046 MS.gene026877:intron 50.0%
CAAAGCACAGCTGCATCCTT+TGG + chr2.2:17891296-17891315 None:intergenic 50.0%
CAAAGGATGCAGCTGTGCTT+TGG - chr2.2:17891294-17891313 MS.gene026877:intron 50.0%
CACAACAAGGGGTGAGAAAG+AGG + chr2.2:17892066-17892085 None:intergenic 50.0%
CTGAATGGAAACCAACCTGC+AGG + chr2.2:17893118-17893137 None:intergenic 50.0%
GACAGTTTACTAGGGACCTC+AGG + chr2.2:17893421-17893440 None:intergenic 50.0%
GCTGGTAGCTTCTTAGTTGC+CGG + chr2.2:17894570-17894589 None:intergenic 50.0%
GTTACTGGGACAATGCTTGC+AGG - chr2.2:17890233-17890252 MS.gene026877:intron 50.0%
TCTCTCCAGGTTCACCTAAG+AGG - chr2.2:17893680-17893699 MS.gene026877:intron 50.0%
TGATGGGAAATGCTCAGTCC+AGG - chr2.2:17891247-17891266 MS.gene026877:intron 50.0%
TGCGGTTTCCTAATTCCTGG+TGG - chr2.2:17892642-17892661 MS.gene026877:intron 50.0%
TGGTGTATGCTTTGTCTGGC+TGG - chr2.2:17890174-17890193 MS.gene026877:intron 50.0%
TTGCCCGCAGGCAAAAAGAA+AGG - chr2.2:17892974-17892993 MS.gene026877:intron 50.0%
! CAAGGCTTGGGTTTTGCAGA+TGG + chr2.2:17893058-17893077 None:intergenic 50.0%
! TTCTTTTTGCCTGCGGGCAA+GGG + chr2.2:17892974-17892993 None:intergenic 50.0%
! TTTCTTTTTGCCTGCGGGCA+AGG + chr2.2:17892975-17892994 None:intergenic 50.0%
!! ACATGAGGATGGGTTGGAAG+TGG - chr2.2:17890154-17890173 MS.gene026877:intron 50.0%
!! CTGCAGGTTGGTTTCCATTC+AGG - chr2.2:17893116-17893135 MS.gene026877:CDS 50.0%
!! TTAGGAGTGTTGGTGCTGCA+TGG - chr2.2:17890596-17890615 MS.gene026877:intron 50.0%
!!! AGTGTCAAGCTTTTGGGGTC+AGG - chr2.2:17890810-17890829 MS.gene026877:CDS 50.0%
CTTCTTAGTTGCCGGTGCAC+TGG + chr2.2:17894562-17894581 None:intergenic 55.0%
GAGGTTCGTTGGCAAGCTTC+TGG - chr2.2:17893026-17893045 MS.gene026877:intron 55.0%
GGTTCGTTGGCAAGCTTCTG+GGG - chr2.2:17893028-17893047 MS.gene026877:intron 55.0%
GTTCAAGACTGAGCACCTGG+CGG + chr2.2:17892581-17892600 None:intergenic 55.0%
! CTGGGTGACAGTGATGACGA+TGG - chr2.2:17893298-17893317 MS.gene026877:intron 55.0%
! TCTGGAGTGGCAGAAACTGC+CGG + chr2.2:17892746-17892765 None:intergenic 55.0%
! TTTTCCTCTGGCACTGCGCA+AGG + chr2.2:17893076-17893095 None:intergenic 55.0%
!! TGTGTGGGTTTCAGGTTCGC+TGG - chr2.2:17892036-17892055 MS.gene026877:intron 55.0%
AAGTCTCTTCCCTTGCCCGC+AGG - chr2.2:17892962-17892981 MS.gene026877:intron 60.0%
TCTGGCACTGCGCAAGGCTT+GGG + chr2.2:17893070-17893089 None:intergenic 60.0%
TGAAGTAGTCTGGGAGGGGG+AGG - chr2.2:17893991-17894010 MS.gene026877:intron 60.0%
CAAGCCTTGCGCAGTGCCAG+AGG - chr2.2:17893069-17893088 MS.gene026877:CDS 65.0%
CTCTGGCACTGCGCAAGGCT+TGG + chr2.2:17893071-17893090 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 17889747 17894689 17889747 ID=MS.gene026877
chr2.2 mRNA 17889747 17894689 17889747 ID=MS.gene026877.t1;Parent=MS.gene026877
chr2.2 exon 17894621 17894689 17894621 ID=MS.gene026877.t1.exon1;Parent=MS.gene026877.t1
chr2.2 CDS 17894621 17894689 17894621 ID=cds.MS.gene026877.t1;Parent=MS.gene026877.t1
chr2.2 exon 17894437 17894492 17894437 ID=MS.gene026877.t1.exon2;Parent=MS.gene026877.t1
chr2.2 CDS 17894437 17894492 17894437 ID=cds.MS.gene026877.t1;Parent=MS.gene026877.t1
chr2.2 exon 17894182 17894306 17894182 ID=MS.gene026877.t1.exon3;Parent=MS.gene026877.t1
chr2.2 CDS 17894182 17894306 17894182 ID=cds.MS.gene026877.t1;Parent=MS.gene026877.t1
chr2.2 exon 17893046 17893205 17893046 ID=MS.gene026877.t1.exon4;Parent=MS.gene026877.t1
chr2.2 CDS 17893046 17893205 17893046 ID=cds.MS.gene026877.t1;Parent=MS.gene026877.t1
chr2.2 exon 17891315 17891751 17891315 ID=MS.gene026877.t1.exon5;Parent=MS.gene026877.t1
chr2.2 CDS 17891315 17891751 17891315 ID=cds.MS.gene026877.t1;Parent=MS.gene026877.t1
chr2.2 exon 17890691 17891179 17890691 ID=MS.gene026877.t1.exon6;Parent=MS.gene026877.t1
chr2.2 CDS 17890691 17891179 17890691 ID=cds.MS.gene026877.t1;Parent=MS.gene026877.t1
chr2.2 exon 17890329 17890449 17890329 ID=MS.gene026877.t1.exon7;Parent=MS.gene026877.t1
chr2.2 CDS 17890329 17890449 17890329 ID=cds.MS.gene026877.t1;Parent=MS.gene026877.t1
chr2.2 exon 17889747 17889873 17889747 ID=MS.gene026877.t1.exon8;Parent=MS.gene026877.t1
chr2.2 CDS 17889747 17889873 17889747 ID=cds.MS.gene026877.t1;Parent=MS.gene026877.t1
Gene Sequence

>MS.gene026877

ATGTCGAACACCGAAACCCTATCCCTAATTCACGAAATCGAATCTCTCGTCTCAGATCAAATTCAAGTGGTATTCATCTCTCTCTCTCCAATCAAATCTCTTCAGTTTCCCCTTACTTCTCTTCCCCCAATTTTCAATTTCAAAGCCTTTTTTTATCCTAAATTTGTTTGATTTCATGAAAATTGGTTTAATTTCAGGTTTCATACAAGTGGCTAAGTCGCAATTATCAGATATCATCAAATGAAGCAAAAAGGTAGGGTTTTTAGTTTTATGCAGTTGATGGGTTTTTTAATGCGTAAAAAGCTTTGTTGCTTTGTGAAATTGATGGGTTTTTTTACTATGGTATGAAATTTGTGAAAAGTTGAAAATTTTGTTATATGTAGGTTGCTTCAGGAGTTTGTTGAAAAACATGAGGATGGGTTGGAAGTGGTGTATGCTTTGTCTGGCTGGTTAAAGAGTAGTATTCCTAGCTACCATGTAAGGCTTGTTACTGGGACAATGCTTGCAGGTACTATCATCTTTTTTATGTATAATAATTAATATTATAGTTGTAGCGGCAATTATGAACTATGAAGGTTAGACACGGACACTAGACATGAAACCGACACTGATACATCGACACTGATGATAATTTGAGTAAATGTCTTGGTGTCGTATTGGTGTCAGATATCGGGCATGTCTTAAATTTTAAGTGTCAGTGCTATATAGGTACCGGACATGTCAAACAGACACACGATACTGACACTGCTATGTCGACACTAATAATCATTTGAGAAAATTAAAGTGATTGAAAGTAATTATCACATGTGTCAGTGTTGTATTATTGTCGGATATTAGACATGCCTTCAATTAGGAGTGTTGGTGCTGCATGGATCATGAAAAATGATTTTGACTTTCCATTAATTGTATTTTTTTCCCTACTGCTTAATACTTCACTGTTTGATGTTTTGATTTGATGTGATATCATTAGATTTTGCTCTATCTTTAATTTTTATCTCATAAACTTGGTGTGTTTTCTTCATAGTTTTGTGGCTGTTGAGTTTATGCTTGTTTGTTTGGTTTGAGTGTCAAGCTTTTGGGGTCAGGTTGAAAACAAACATAACTGATGGTGATGGATGTTATTTTTCAAGCGAACTGTTGATTGTCCTTTAGCATCTTTTTGTACAGGAACTGAAGTAATTGGTGTTTATTAATTCTCCTATATGAAACCATGACATGAACCAATTTGGTGTTTTTCTGACCCATCATTTTGGTATGGTCAATTTAGTCTCTATTTGAAGAAATGCTTATTAACTAACTCAATTTAGATTTAGGTGGGCTAGTTTAGCTTCAAAAAAAACTAACTCAATTTAGATGTTCAGTTAAAAAAAAATTGGAAACATTGTTGTCCAATGAGTTGAGAAAAAATTTCATGTCACTCTGGAGTGCCTTACAAACATTAGGAAGTAGGAGTATCATGAAACTGATTCTCATTTTTTATGCAGAAGCACAGGAAGAGTTTGATGGGAAATGCTCAGTCCAGGTATATAGTGTGCAAGCTAGTATTCCAAAGGATGCAGCTGTGCTTTGGAATGCAGAATTCATTCAAGCAGAAGAGCTCTTCAAGAAGCTTTCCAAAGCTGATAATTGCTTGGGAGACAATAGGTAGGTTCTATGTCTTCAGAATATGTATATAGTATTTTAGTTTTTTGATAAGGAATATTGAGTATGTATATAGTATTAGTCTATTAGAATATATGGTTTTATCATTTGTTGTCCCCCAAGCAAGTCATGATATTAGTAGGAATGTTTTTTATGAGAATTAGTCTGATTGCTTTATAAAATTTATGCCAGCAGATTTGATGCCACTCATACTGAACTGACAAATTTTCTTTTTGGTTCTCTTTGCCAATGGCGATTACAACACTAATATATTTTGTATACTTGACAAGAGACCAGAAATTTTTTGGGTAACGTTTCTGTGAATTGCTTTAGTAGGAGTACTCAGTGTCACCGTAATATATATTCAATAATTAAAAATGAAACTATTTTTCATGAACTATATGATTTGACTAAATTTGTCGCCAAGACAATCTATCACTATTACATGTTCCAAAACTTGGTTTTTTCCTCCCTAATAATGTTTCTTTCATGTGACCAAAAAATGGGTCAGTGTCAGTAGAAATTCGAGAAACCAAACCAGGATCCTTCCATCTTCTGCTTTTGGAATATGCTCTCCACTATTGGAATGATAGAGCACCAATTTAGTGTTCATAAAAAAAGATTAGCATTAAGTCTTTCCATTGCTTTTGTGTGGGTTTCAGGTTCGCTGGAAGACCTCTTTCTCACCCCTTGTTGTGCTATTTTCTTATCATATATTTGTTTTGTTAAAGTCTTCTGATATTAAAATGTAGAATGGATATAATATAATATGATTCTGGTTTCTATTTTGATATGAAAGAGTGAAAGATAGAATGATGTGAATGTGTGATGCATCTCTCCAGGACATGTAATTGCACAACATTTTAAAAAGAGATGAGAAAGCTGCTTTGAAAAGTAGGGGAATTTTTTTTTTTTTTTTTGGTTTCAGATCAACAAAAAGTGCTTCCAATAAAGCTTCTGAATCAGTGTCATTCAAATGTATTTGATTTTTGTAGCCAGAAAAAAAAGTGGTGGTTTGATTTTGCAGTTTTTAATTCATTGTATGTATGTGCAATGAGTTGACCAAAATAATCAATCTAATATTTCAATCTTCTGGCAGTTTCTTTTTACTGTTGTAAGATTTAATTTCCTCAATAACTTCATTAATGAAGAATGTAGTCACTGAAAATGATTATAAGAATTTTCTTTTACCGCCAGGTGCTCAGTCTTGAACTCTGAACAGACACGCATGCGTTGCTGTCTTATATGTGTCTTTGCGGTTTCCTAATTCCTGGTGGCTAACTAGCATATTTTTCAGGTTCTGTGGGATCTCTAATTCTTTTGTACAAAGGGTAAAAAGGAACGAGGATGGACAACCGGCAGTTTCTGCCACTCCAGAAGTAAAATCTGTAGTAGGCTTGGGACCAACAAAGAGTAATGTTGTTCACCAACCTCCTAAAAACATAGCACACAATTCTATTGCTAAAGTTGATCTCAAAACACAGAATGTGGAGAAAGATGTCAAGAGTGAAAGCAATGGTACAGGAAATGCAGGAGTTCATGATAACATCAATAAACCTATTGCAGAGAAAGAAAAGTCTCTTCCCTTGCCCGCAGGCAAAAAGAAAGGACAAGCTGATAAAAGTGGCTCTGTTAATGGAGGTTCGTTGGCAAGCTTCTGGGGTCGTCCATCTGCAAAACCCAAGCCTTGCGCAGTGCCAGAGGAAAATAGTAACATGATTTCAAAACCTGCAGGTTGGTTTCCATTCAGGTTTATTGAATATATTTTTTTAAGAATTTTCAAATCCTTCTCGATGATTATAGTTATAATAGCAGTAGTTATGTAACATTGCATCTCCAATATTTTACTGACATAATTAAATCCTTCAGAAGTTGTTGAAAATGGCCAAACTTGTGCTCATGAAGCAGTACTGGGTGACAGTGATGACGATGGTAATCGAAGTGTCGCCTTAAGAAGATCATCCAACAGGAAAAGAAGGGTTGTCTTTGATTTCTCAGATGAAGATGAAGATGTCATCAGTTTAGCATCACCTGAGGTCCCTAGTAAACTGTCATCTAAAGATTCCGAACAAAATGACAAAAAGTCATTAGAGAAAGTTGCTTTGAATTTTGATTTACCGGTTGAAATTAAGCCATTGGTTAAGGAAGAAAGAGTAACTGAGAAAAAAGTTTTCCAACCACCAAAAGATTTATCAGTTATCAGCAAGTGCACAAGTACTGGGAAATCATCTACTGAGAAGTTGCAGAGCAGTGCTCCAGAAATTTGTGTAAATAAGGATAGTGCAAAAAAGGTCTCTCCAGGTTCACCTAAGAGGAGAAAAGTGATGAAGACCAGGATTGATGAACGAGGAAGAGAAGGTACCCTTAAATGCATTGTTTTAACTCACCGGGTTCTTTCTTCCATATTATAGTGTAGAAGTCACCTTTATGTATGACTATAATATGTTAATTCTGCACTTATGTTTTGAAACTAGTTCTTTACGAAAATTTCACTTATATATGCATGATTATTGGGTGATCCTTATCAAAATTTTCATTCACTATAAGTTCTTTTGTATTATATATTTGTATTTGTCTCTTACTTATGTTTATTCTTCAGTAACTGAAGTAGTCTGGGAGGGGGAGGAGACAGAGCCAAAGAAAGATGATAAGGATACAACTAAGAAAGCTGATACGGTTGCAAAGAAAGCGGACAATACATCTACCAAAGCTGTTAACGGGTTAGTGTTATTCTTACATTTGAATTGAATGAATGAAATTTTGGAAGCAATCAATACTTCAAAGGCTGCATGACTCCTTGTTGGGTGTCCCTTGAAGTATACAGTGATTCTCATTAGGTTTGCTTTGCAACTTGCACAGTCTTATTTCCTAAAGTTGCATCAGGGTTTGACAAAAAATTCCTGATTTCATGATATTAAAATGAGTTATACATTGATATGAGCAATTCATGAATATAGGCAGTTCATGAATATAGGCAGTTCATTGCCCCTTCTTACTAGCTGATTGTCCACTTTGGCCAACTTCGAAGTTTGTAGACATCCCCACTGTACTTTCAATCTGATTTTATGGCTTAAACTCAAATATTTTTTTATTTTTGAAACAAAAGTTTACGCTTTTATTGCAAGTTTAAAGCTTGACAGTGATTGACGACTAACTTCATTCATTGCATTTCCAGTGCACCGGCAACTAAGAAGCTACCAGCTACATCAAATACTACTGGAAGAGGAGGAAGCAAGAAAGCAGGAAACATAAAGGATCCGAAACAGGGCAATATTCTTTCATTTTTCAAAAAGAAAGTATGA
Protein sequence

>MS.gene026877.t1

MSNTETLSLIHEIESLVSDQIQVVSYKWLSRNYQISSNEAKRLLQEFVEKHEDGLEVVYALSGWLKSSIPSYHVRLVTGTMLAEAQEEFDGKCSVQVYSVQASIPKDAAVLWNAEFIQAEELFKKLSKADNCLGDNRFCGISNSFVQRVKRNEDGQPAVSATPEVKSVVGLGPTKSNVVHQPPKNIAHNSIAKVDLKTQNVEKDVKSESNGTGNAGVHDNINKPIAEKEKSLPLPAGKKKGQADKSGSVNGGSLASFWGRPSAKPKPCAVPEENSNMISKPAEVVENGQTCAHEAVLGDSDDDGNRSVALRRSSNRKRRVVFDFSDEDEDVISLASPEVPSKLSSKDSEQNDKKSLEKVALNFDLPVEIKPLVKEERVTEKKVFQPPKDLSVISKCTSTGKSSTEKLQSSAPEICVNKDSAKKVSPGSPKRRKVMKTRIDERGREVTEVVWEGEETEPKKDDKDTTKKADTVAKKADNTSTKAVNGAPATKKLPATSNTTGRGGSKKAGNIKDPKQGNILSFFKKKV