Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027323.t1 | XP_013448528.1 | 97.1 | 210 | 6 | 0 | 1 | 210 | 8 | 217 | 1.10E-103 | 386 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027323.t1 | Q08069 | 85.8 | 212 | 27 | 2 | 1 | 209 | 8 | 219 | 4.4e-96 | 352.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027323.t1 | B7FMW0 | 97.1 | 210 | 6 | 0 | 1 | 210 | 8 | 217 | 8.3e-104 | 386.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013335 | MS.gene027323 | PPI |
| MS.gene23040 | MS.gene027323 | PPI |
| MS.gene027323 | MS.gene30990 | PPI |
| MS.gene027323 | MS.gene06433 | PPI |
| MS.gene049306 | MS.gene027323 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027323.t1 | MTR_7g053450 | 99.524 | 210 | 1 | 0 | 1 | 210 | 8 | 217 | 2.81e-154 | 426 |
| MS.gene027323.t1 | MTR_8g012330 | 87.500 | 208 | 26 | 0 | 3 | 210 | 81 | 288 | 1.13e-127 | 362 |
| MS.gene027323.t1 | MTR_4g016670 | 86.979 | 192 | 25 | 0 | 19 | 210 | 26 | 217 | 6.39e-122 | 344 |
| MS.gene027323.t1 | MTR_8g012325 | 90.952 | 210 | 17 | 1 | 1 | 210 | 8 | 215 | 2.91e-121 | 342 |
| MS.gene027323.t1 | MTR_4g016663 | 74.699 | 83 | 20 | 1 | 129 | 210 | 5 | 87 | 9.54e-37 | 124 |
| MS.gene027323.t1 | MTR_4g016610 | 59.524 | 84 | 18 | 1 | 127 | 210 | 1042 | 1109 | 2.44e-21 | 92.0 |
| MS.gene027323.t1 | MTR_4g016620 | 67.797 | 59 | 19 | 0 | 128 | 186 | 20 | 78 | 2.86e-21 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027323.t1 | AT5G59240 | 84.848 | 198 | 21 | 1 | 1 | 198 | 8 | 196 | 4.94e-122 | 344 |
| MS.gene027323.t1 | AT5G20290 | 80.930 | 215 | 36 | 1 | 1 | 210 | 8 | 222 | 3.43e-105 | 302 |
Find 55 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCGCAAGACTCGTCTTC+TGG | 0.273540 | 7.1:+48664935 | MS.gene027323:CDS |
| CTCGCCCTGGTCAATGTGGC+AGG | 0.353391 | 7.1:+48666008 | MS.gene027323:CDS |
| GGTCAATGTGGCAGGGCTGA+TGG | 0.387861 | 7.1:+48666016 | MS.gene027323:CDS |
| TGGCACTCTTAACCAGAGTC+TGG | 0.390850 | 7.1:-48664998 | None:intergenic |
| TTGAGCAGCGTCAGAAAGAT+AGG | 0.420260 | 7.1:+48665924 | MS.gene027323:CDS |
| CTAGACAGCTTAGTATTGGC+TGG | 0.431607 | 7.1:-48664813 | None:intergenic |
| GTCAATGTGGCAGGGCTGAT+GGG | 0.439498 | 7.1:+48666017 | MS.gene027323:CDS |
| GTCAGGAGGATCCGTGTTAG+AGG | 0.444512 | 7.1:+48664846 | MS.gene027323:CDS |
| AAAGAAAACAGCAGCAAAGA+AGG | 0.444901 | 7.1:+48665091 | MS.gene027323:CDS |
| GTTGCTAGACAGCTTAGTAT+TGG | 0.455729 | 7.1:-48664817 | None:intergenic |
| TCCAACAGGTACATTCTTGA+AGG | 0.455732 | 7.1:+48666125 | MS.gene027323:intron |
| CAAGACTCGTCTTCTGGATG+TGG | 0.457895 | 7.1:+48664941 | MS.gene027323:CDS |
| GCCTGCATTTCATCTCGCCC+TGG | 0.462140 | 7.1:+48665995 | MS.gene027323:CDS |
| TCCCACATCGAAGAGCAGTT+TGG | 0.472868 | 7.1:+48665956 | MS.gene027323:CDS |
| TCAGCCCTGCCACATTGACC+AGG | 0.474891 | 7.1:-48666013 | None:intergenic |
| CAGGTACATTCTTGAAGGTA+AGG | 0.479114 | 7.1:+48666130 | MS.gene027323:intron |
| TGTCTAGCAACAAGACAGTC+AGG | 0.484105 | 7.1:+48664829 | MS.gene027323:CDS |
| ATGCACAAGAGGCGTGCCAC+TGG | 0.486837 | 7.1:+48663608 | MS.gene027323:CDS |
| CATTCTTGAAGGTAAGGAGT+TGG | 0.488645 | 7.1:+48666136 | MS.gene027323:CDS |
| ACAGCTTAGTATTGGCTGGC+TGG | 0.495620 | 7.1:-48664809 | None:intergenic |
| TGAAGATACCACTGCTTGAA+TGG | 0.502756 | 7.1:-48665041 | None:intergenic |
| ACGAACAAGCTCATTGTTTG+AGG | 0.510027 | 7.1:-48664973 | None:intergenic |
| TTAGAGGTGGCAATGTGAAA+TGG | 0.513214 | 7.1:+48664862 | MS.gene027323:CDS |
| CAGCACTACGGTGTTGAAGT+TGG | 0.523099 | 7.1:+48665062 | MS.gene027323:CDS |
| ATCGAAGAGCAGTTTGGTGG+TGG | 0.523210 | 7.1:+48665962 | MS.gene027323:CDS |
| CTGGTGGCAAGAAGAAGAGC+TGG | 0.534252 | 7.1:+48663627 | MS.gene027323:CDS |
| GCTTGTTCGTACCCAGACTC+TGG | 0.539239 | 7.1:+48664986 | MS.gene027323:CDS |
| GCTCTTCTTCTTGCCACCAG+TGG | 0.539638 | 7.1:-48663624 | None:intergenic |
| CACATCGAAGAGCAGTTTGG+TGG | 0.547653 | 7.1:+48665959 | MS.gene027323:CDS |
| TGAATGGTGCAGCATCGACT+TGG | 0.553997 | 7.1:-48665025 | None:intergenic |
| TCGCCCTGGTCAATGTGGCA+GGG | 0.554881 | 7.1:+48666009 | MS.gene027323:CDS |
| ACCAGGGCGAGATGAAATGC+AGG | 0.557367 | 7.1:-48665996 | None:intergenic |
| AGTGGCACGCCTCTTGTGCA+TGG | 0.560948 | 7.1:-48663606 | None:intergenic |
| ACCAAACTGCTCTTCGATGT+GGG | 0.568455 | 7.1:-48665957 | None:intergenic |
| TGCAGCATCGACTTGGACAA+TGG | 0.570544 | 7.1:-48665018 | None:intergenic |
| GGCACTCTTAACCAGAGTCT+GGG | 0.571005 | 7.1:-48664997 | None:intergenic |
| CACCAAACTGCTCTTCGATG+TGG | 0.574855 | 7.1:-48665958 | None:intergenic |
| GAAATGGAGAGCTCTTCGAT+TGG | 0.577269 | 7.1:+48664878 | MS.gene027323:CDS |
| CACAAGAGGCGTGCCACTGG+TGG | 0.589648 | 7.1:+48663611 | MS.gene027323:CDS |
| AGAGCTCTTCGATTGGACAC+TGG | 0.596090 | 7.1:+48664885 | MS.gene027323:CDS |
| TCACATTGCCACCTCTAACA+CGG | 0.596796 | 7.1:-48664857 | None:intergenic |
| AAATTTCTCGTGGGGTAGTG+AGG | 0.601685 | 7.1:+48664908 | MS.gene027323:CDS |
| TGGACACTGGAAATTTCTCG+TGG | 0.602098 | 7.1:+48664898 | MS.gene027323:CDS |
| CAGTGGTATCTTCAGCACTA+CGG | 0.606289 | 7.1:+48665050 | MS.gene027323:CDS |
| GGACACTGGAAATTTCTCGT+GGG | 0.613954 | 7.1:+48664899 | MS.gene027323:CDS |
| GACACTGGAAATTTCTCGTG+GGG | 0.616779 | 7.1:+48664900 | MS.gene027323:CDS |
| CAGCCCTGCCACATTGACCA+GGG | 0.623121 | 7.1:-48666012 | None:intergenic |
| AGGAGGATCCGTGTTAGAGG+TGG | 0.633660 | 7.1:+48664849 | MS.gene027323:CDS |
| CTAGGGATTCCATGCACAAG+AGG | 0.633798 | 7.1:+48663597 | None:intergenic |
| TTCCAAAACTATCACCTCTG+TGG | 0.642187 | 7.1:-48665117 | None:intergenic |
| ATGCTGCACCATTCAAGCAG+TGG | 0.644432 | 7.1:+48665033 | MS.gene027323:CDS |
| TCATCTCGCCCTGGTCAATG+TGG | 0.644879 | 7.1:+48666004 | MS.gene027323:CDS |
| ACTACGGTGTTGAAGTTGGT+AGG | 0.661832 | 7.1:+48665066 | MS.gene027323:CDS |
| AGCAAAGAAGGACTCCACAG+AGG | 0.702639 | 7.1:+48665103 | MS.gene027323:CDS |
| CTAGCAACAAGACAGTCAGG+AGG | 0.730674 | 7.1:+48664832 | MS.gene027323:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACTTATTATACCATTAA+GGG | + | chr7.1:48665734-48665753 | MS.gene027323:intron | 15.0% |
| !! | TATAACTTATTATACCATTA+AGG | + | chr7.1:48665733-48665752 | MS.gene027323:intron | 15.0% |
| !! | TATTATTCATAAGTTTGTAA+AGG | - | chr7.1:48664162-48664181 | None:intergenic | 15.0% |
| !! | TCAAAGATAAATATTTGAAA+AGG | - | chr7.1:48665248-48665267 | None:intergenic | 15.0% |
| !! | TCAAATTATAATCTAATCAA+AGG | - | chr7.1:48664665-48664684 | None:intergenic | 15.0% |
| !! | TGATTAGATTATAATTTGAA+TGG | + | chr7.1:48664666-48664685 | MS.gene027323:intron | 15.0% |
| !!! | ATATATTTTGTGTTTCTTAA+TGG | + | chr7.1:48665328-48665347 | MS.gene027323:intron | 15.0% |
| !!! | ATTGGATATATCATTTTTAA+GGG | + | chr7.1:48665626-48665645 | MS.gene027323:intron | 15.0% |
| !!! | ATTGGATATATCATTTTTAT+TGG | + | chr7.1:48665551-48665570 | MS.gene027323:intron | 15.0% |
| !!! | TATGTTTAGTTTACTATTAA+GGG | + | chr7.1:48665398-48665417 | MS.gene027323:intron | 15.0% |
| !!! | TATTGGATATATCATTTTTA+AGG | + | chr7.1:48665550-48665569 | MS.gene027323:intron | 15.0% |
| !!! | TTAATAATTTTATTAGAGAG+AGG | - | chr7.1:48663680-48663699 | None:intergenic | 15.0% |
| !! | AAAAATTAAGACAATCCATA+CGG | - | chr7.1:48664035-48664054 | None:intergenic | 20.0% |
| !! | AAATCCTAATCATATTTAAC+AGG | - | chr7.1:48664631-48664650 | None:intergenic | 20.0% |
| !! | AAGAAATTACAGAAAAAGAA+GGG | + | chr7.1:48666170-48666189 | MS.gene027323:CDS | 20.0% |
| !! | AGAGACCAATTAAATTTAAT+GGG | - | chr7.1:48664742-48664761 | None:intergenic | 20.0% |
| !! | ATATTGATCAAAATACATAG+AGG | + | chr7.1:48664521-48664540 | MS.gene027323:intron | 20.0% |
| !! | ATCTTTATATGAATAACCTA+TGG | + | chr7.1:48665500-48665519 | MS.gene027323:intron | 20.0% |
| !! | ATTAATGTCTTTCAGTATTA+AGG | + | chr7.1:48663819-48663838 | MS.gene027323:intron | 20.0% |
| !! | ATTGAGTTTAAATTGTAAGT+AGG | + | chr7.1:48665279-48665298 | MS.gene027323:intron | 20.0% |
| !! | CTTAATAGTAAACTAAACAT+AGG | - | chr7.1:48665399-48665418 | None:intergenic | 20.0% |
| !! | TAGAGACCAATTAAATTTAA+TGG | - | chr7.1:48664743-48664762 | None:intergenic | 20.0% |
| !! | TAGGTTATTCATATAAAGAT+TGG | - | chr7.1:48665500-48665519 | None:intergenic | 20.0% |
| !! | TTTGTACTTCATTATTCAAA+TGG | + | chr7.1:48663747-48663766 | MS.gene027323:intron | 20.0% |
| !!! | ATGTTTAGTTTACTATTAAG+GGG | + | chr7.1:48665399-48665418 | MS.gene027323:intron | 20.0% |
| !!! | ATGTTTTCAAAAGTTCATAA+TGG | + | chr7.1:48665598-48665617 | MS.gene027323:intron | 20.0% |
| !!! | CTATGTTTAGTTTACTATTA+AGG | + | chr7.1:48665397-48665416 | MS.gene027323:intron | 20.0% |
| !!! | CTTTAAGTTATCACTTTAAT+TGG | + | chr7.1:48665424-48665443 | MS.gene027323:intron | 20.0% |
| !!! | TACTTTAAGTTTTCATTTTG+TGG | + | chr7.1:48665757-48665776 | MS.gene027323:intron | 20.0% |
| !!! | TAGGCTTATTGTTTTTTTAT+TGG | + | chr7.1:48665305-48665324 | MS.gene027323:intron | 20.0% |
| !!! | TTGAATGGTGTTTTTTTTTT+TGG | + | chr7.1:48664681-48664700 | MS.gene027323:intron | 20.0% |
| !!! | TTGGATATATCATTTTTAAG+GGG | + | chr7.1:48665627-48665646 | MS.gene027323:intron | 20.0% |
| !!! | TTTCATTTTGTGGATTAAAT+TGG | + | chr7.1:48665767-48665786 | MS.gene027323:intron | 20.0% |
| ! | AAAATAAAAAAACCATCCAC+AGG | - | chr7.1:48665197-48665216 | None:intergenic | 25.0% |
| ! | AAAATTAAGACAATCCATAC+GGG | - | chr7.1:48664034-48664053 | None:intergenic | 25.0% |
| ! | AAATGATAATTTCCCCTTAT+TGG | - | chr7.1:48665529-48665548 | None:intergenic | 25.0% |
| ! | CTTTCCTGTTAAATATGATT+AGG | + | chr7.1:48664624-48664643 | MS.gene027323:intron | 25.0% |
| ! | GAAGAAATTACAGAAAAAGA+AGG | + | chr7.1:48666169-48666188 | MS.gene027323:CDS | 25.0% |
| ! | GAGACCAATTAAATTTAATG+GGG | - | chr7.1:48664741-48664760 | None:intergenic | 25.0% |
| ! | GGAGTTTACTAAAATATAAG+CGG | - | chr7.1:48666064-48666083 | None:intergenic | 25.0% |
| ! | TGATCCCCATTAAATTTAAT+TGG | + | chr7.1:48664734-48664753 | MS.gene027323:intron | 25.0% |
| ! | TTCATTCGTGGAATTATATA+TGG | + | chr7.1:48664430-48664449 | MS.gene027323:intron | 25.0% |
| ! | TTGTTAGCTATTGTAGATTA+TGG | + | chr7.1:48663779-48663798 | MS.gene027323:intron | 25.0% |
| !! | AAAACTTAAAGTACCCTTAA+TGG | - | chr7.1:48665750-48665769 | None:intergenic | 25.0% |
| !! | AATAAGCTTTTTATCCAAAC+AGG | - | chr7.1:48663846-48663865 | None:intergenic | 25.0% |
| !! | AGCTTATGAAGATACAATTT+TGG | - | chr7.1:48664124-48664143 | None:intergenic | 25.0% |
| !! | ATAAGCTTTTTATCCAAACA+GGG | - | chr7.1:48663845-48663864 | None:intergenic | 25.0% |
| !! | ATGATTAGGATTTTTGTCAT+CGG | + | chr7.1:48664638-48664657 | MS.gene027323:intron | 25.0% |
| !! | TAATCTGTTTGTTAAAACTC+AGG | + | chr7.1:48664304-48664323 | MS.gene027323:intron | 25.0% |
| !!! | AGTTTTAACAAACAGATTAG+GGG | - | chr7.1:48664303-48664322 | None:intergenic | 25.0% |
| !!! | GAGTTTTAACAAACAGATTA+GGG | - | chr7.1:48664304-48664323 | None:intergenic | 25.0% |
| !!! | GGGGAAATTATCATTTTTAT+TGG | + | chr7.1:48665533-48665552 | MS.gene027323:intron | 25.0% |
| !!! | TAATTTGTTCCACTCTTTAT+AGG | + | chr7.1:48665369-48665388 | MS.gene027323:intron | 25.0% |
| !!! | TGAGTTTTAACAAACAGATT+AGG | - | chr7.1:48664305-48664324 | None:intergenic | 25.0% |
| !!! | TGCTATAAGTTGTTTTCAAA+TGG | + | chr7.1:48663926-48663945 | MS.gene027323:intron | 25.0% |
| !!! | TGTTTTCGTTTGTTTTGTAT+AGG | + | chr7.1:48664772-48664791 | MS.gene027323:intron | 25.0% |
| !!! | TTTTTCTTTTGATTTCCAAC+AGG | + | chr7.1:48666111-48666130 | MS.gene027323:intron | 25.0% |
| AAGTTCATAATGGCATGTAT+TGG | + | chr7.1:48665608-48665627 | MS.gene027323:intron | 30.0% | |
| ACAGCACAAACATATATAAC+AGG | - | chr7.1:48665148-48665167 | None:intergenic | 30.0% | |
| ATAACCTATGGTTACCAATA+AGG | + | chr7.1:48665512-48665531 | MS.gene027323:intron | 30.0% | |
| ATACACCAGAAAACTAATTC+AGG | - | chr7.1:48664403-48664422 | None:intergenic | 30.0% | |
| ATAGAGGATGTATACCTATT+GGG | + | chr7.1:48664537-48664556 | MS.gene027323:intron | 30.0% | |
| ATAGGTTATCCTATAAAGAG+TGG | - | chr7.1:48665381-48665400 | None:intergenic | 30.0% | |
| ATGATATGTGCTTTCAGTTA+TGG | + | chr7.1:48665168-48665187 | MS.gene027323:intron | 30.0% | |
| ATGTATTCTGTGTTCCTTAA+TGG | + | chr7.1:48665447-48665466 | MS.gene027323:intron | 30.0% | |
| CGAAAAACAAAAAAACAAGC+TGG | - | chr7.1:48663724-48663743 | None:intergenic | 30.0% | |
| CGATATATAATCTTCCCAAT+AGG | - | chr7.1:48664554-48664573 | None:intergenic | 30.0% | |
| GTGAACACTAAAAACAAAGA+TGG | - | chr7.1:48666085-48666104 | None:intergenic | 30.0% | |
| TAACCTATGGTTACCAATAA+GGG | + | chr7.1:48665513-48665532 | MS.gene027323:intron | 30.0% | |
| TACACCAGAAAACTAATTCA+GGG | - | chr7.1:48664402-48664421 | None:intergenic | 30.0% | |
| TAGCTATTGTAGATTATGGA+TGG | + | chr7.1:48663783-48663802 | MS.gene027323:intron | 30.0% | |
| TGTATGTCATTATTCATTCG+TGG | + | chr7.1:48664418-48664437 | MS.gene027323:intron | 30.0% | |
| TTAAATTGTAAGTAGGTGCT+AGG | + | chr7.1:48665286-48665305 | MS.gene027323:intron | 30.0% | |
| ! | ATCTTTTGAATTGAACATCC+AGG | + | chr7.1:48665847-48665866 | MS.gene027323:intron | 30.0% |
| ! | CTTTTCAAAACATGCCATTA+AGG | - | chr7.1:48665464-48665483 | None:intergenic | 30.0% |
| ! | TAGTTTGCATAAGTTCACAT+AGG | + | chr7.1:48664008-48664027 | MS.gene027323:intron | 30.0% |
| ! | TGATTAGGATTTTTGTCATC+GGG | + | chr7.1:48664639-48664658 | MS.gene027323:intron | 30.0% |
| !! | GTTGTTTTCAAATGGTATCT+TGG | + | chr7.1:48663934-48663953 | MS.gene027323:intron | 30.0% |
| AAAGAAAACAGCAGCAAAGA+AGG | + | chr7.1:48665091-48665110 | MS.gene027323:CDS | 35.0% | |
| AACCTATGGTTACCAATAAG+GGG | + | chr7.1:48665514-48665533 | MS.gene027323:intron | 35.0% | |
| ACTACTACATAGTAGAATGC+AGG | - | chr7.1:48665793-48665812 | None:intergenic | 35.0% | |
| ATATGTGCTTTCAGTTATGG+TGG | + | chr7.1:48665171-48665190 | MS.gene027323:intron | 35.0% | |
| CATAGAGGATGTATACCTAT+TGG | + | chr7.1:48664536-48664555 | MS.gene027323:intron | 35.0% | |
| CTAAAATATAAGCGGAGACA+AGG | - | chr7.1:48666056-48666075 | None:intergenic | 35.0% | |
| ! | TTTTGAATTGAACATCCAGG+AGG | + | chr7.1:48665850-48665869 | MS.gene027323:intron | 35.0% |
| ACCAGAAAACTAATTCAGGG+TGG | - | chr7.1:48664399-48664418 | None:intergenic | 40.0% | |
| ACCTTCAAGAATGTACCTGT+TGG | - | chr7.1:48666129-48666148 | None:intergenic | 40.0% | |
| ACGAACAAGCTCATTGTTTG+AGG | - | chr7.1:48664976-48664995 | None:intergenic | 40.0% | |
| ACGTTATGTGAGACTGTTTG+AGG | - | chr7.1:48664241-48664260 | None:intergenic | 40.0% | |
| CAGGTACATTCTTGAAGGTA+AGG | + | chr7.1:48666130-48666149 | MS.gene027323:intron | 40.0% | |
| CATTCTTGAAGGTAAGGAGT+TGG | + | chr7.1:48666136-48666155 | MS.gene027323:CDS | 40.0% | |
| CCAAATAAGCCAATCCAAAC+GGG | + | chr7.1:48664277-48664296 | MS.gene027323:intron | 40.0% | |
| CCCAAATAAGCCAATCCAAA+CGG | + | chr7.1:48664276-48664295 | MS.gene027323:intron | 40.0% | |
| CGTTATGTGAGACTGTTTGA+GGG | - | chr7.1:48664240-48664259 | None:intergenic | 40.0% | |
| GTTGCTAGACAGCTTAGTAT+TGG | - | chr7.1:48664820-48664839 | None:intergenic | 40.0% | |
| TCCAACAGGTACATTCTTGA+AGG | + | chr7.1:48666125-48666144 | MS.gene027323:intron | 40.0% | |
| TGAAGATACCACTGCTTGAA+TGG | - | chr7.1:48665044-48665063 | None:intergenic | 40.0% | |
| TTAGAGGTGGCAATGTGAAA+TGG | + | chr7.1:48664862-48664881 | MS.gene027323:CDS | 40.0% | |
| TTCAGTATTAAGGCCCTGTT+TGG | + | chr7.1:48663829-48663848 | MS.gene027323:intron | 40.0% | |
| TTCCAAAACTATCACCTCTG+TGG | - | chr7.1:48665120-48665139 | None:intergenic | 40.0% | |
| ! | GTTTTGTATAGGTACGAGCT+TGG | + | chr7.1:48664783-48664802 | MS.gene027323:intron | 40.0% |
| ! | TTCCCCTTATTGGTAACCAT+AGG | - | chr7.1:48665519-48665538 | None:intergenic | 40.0% |
| !! | CCGTTTGGATTGGCTTATTT+GGG | - | chr7.1:48664279-48664298 | None:intergenic | 40.0% |
| AAATTTCTCGTGGGGTAGTG+AGG | + | chr7.1:48664908-48664927 | MS.gene027323:CDS | 45.0% | |
| ACCAAACTGCTCTTCGATGT+GGG | - | chr7.1:48665960-48665979 | None:intergenic | 45.0% | |
| CAGTGGTATCTTCAGCACTA+CGG | + | chr7.1:48665050-48665069 | MS.gene027323:CDS | 45.0% | |
| GAAATGGAGAGCTCTTCGAT+TGG | + | chr7.1:48664878-48664897 | MS.gene027323:CDS | 45.0% | |
| GACACTGGAAATTTCTCGTG+GGG | + | chr7.1:48664900-48664919 | MS.gene027323:CDS | 45.0% | |
| GGACACTGGAAATTTCTCGT+GGG | + | chr7.1:48664899-48664918 | MS.gene027323:CDS | 45.0% | |
| TAAGTTCACATAGGCCCGTA+TGG | + | chr7.1:48664017-48664036 | MS.gene027323:intron | 45.0% | |
| TCACATTGCCACCTCTAACA+CGG | - | chr7.1:48664860-48664879 | None:intergenic | 45.0% | |
| TGGACACTGGAAATTTCTCG+TGG | + | chr7.1:48664898-48664917 | MS.gene027323:CDS | 45.0% | |
| TGTCTAGCAACAAGACAGTC+AGG | + | chr7.1:48664829-48664848 | MS.gene027323:CDS | 45.0% | |
| TTGAGCAGCGTCAGAAAGAT+AGG | + | chr7.1:48665924-48665943 | MS.gene027323:CDS | 45.0% | |
| TTGTTCTCATTGTGCTCCCT+TGG | + | chr7.1:48664347-48664366 | MS.gene027323:intron | 45.0% | |
| ! | ACTACGGTGTTGAAGTTGGT+AGG | + | chr7.1:48665066-48665085 | MS.gene027323:CDS | 45.0% |
| ! | CTCCACAGAGGTGATAGTTT+TGG | + | chr7.1:48665115-48665134 | MS.gene027323:intron | 45.0% |
| !! | CCCGTTTGGATTGGCTTATT+TGG | - | chr7.1:48664280-48664299 | None:intergenic | 45.0% |
| !! | CTAGACAGCTTAGTATTGGC+TGG | - | chr7.1:48664816-48664835 | None:intergenic | 45.0% |
| !!! | GCCACCCTGAATTAGTTTTC+TGG | + | chr7.1:48664395-48664414 | MS.gene027323:intron | 45.0% |
| AAACAGATTAGGGGCCCGTT+TGG | - | chr7.1:48664294-48664313 | None:intergenic | 50.0% | |
| AAGACAAGCTCGTCCAACCA+AGG | - | chr7.1:48664367-48664386 | None:intergenic | 50.0% | |
| AGACAAGCTCGTCCAACCAA+GGG | - | chr7.1:48664366-48664385 | None:intergenic | 50.0% | |
| AGAGCTCTTCGATTGGACAC+TGG | + | chr7.1:48664885-48664904 | MS.gene027323:CDS | 50.0% | |
| AGCAAAGAAGGACTCCACAG+AGG | + | chr7.1:48665103-48665122 | MS.gene027323:CDS | 50.0% | |
| ATGCTGCACCATTCAAGCAG+TGG | + | chr7.1:48665033-48665052 | MS.gene027323:CDS | 50.0% | |
| CAAGACTCGTCTTCTGGATG+TGG | + | chr7.1:48664941-48664960 | MS.gene027323:CDS | 50.0% | |
| CACATCGAAGAGCAGTTTGG+TGG | + | chr7.1:48665959-48665978 | MS.gene027323:CDS | 50.0% | |
| CACCAAACTGCTCTTCGATG+TGG | - | chr7.1:48665961-48665980 | None:intergenic | 50.0% | |
| CTAGCAACAAGACAGTCAGG+AGG | + | chr7.1:48664832-48664851 | MS.gene027323:CDS | 50.0% | |
| CTTTCAGTTATGGTGGCCTG+TGG | + | chr7.1:48665178-48665197 | MS.gene027323:intron | 50.0% | |
| GAGACTGTTTGAGGGCCTTT+CGG | - | chr7.1:48664232-48664251 | None:intergenic | 50.0% | |
| GGCACTCTTAACCAGAGTCT+GGG | - | chr7.1:48665000-48665019 | None:intergenic | 50.0% | |
| TCCCACATCGAAGAGCAGTT+TGG | + | chr7.1:48665956-48665975 | MS.gene027323:CDS | 50.0% | |
| TCTCATTGTGCTCCCTTGGT+TGG | + | chr7.1:48664351-48664370 | MS.gene027323:intron | 50.0% | |
| TGGCACTCTTAACCAGAGTC+TGG | - | chr7.1:48665001-48665020 | None:intergenic | 50.0% | |
| TGTTTGAGGGCCTTTCGGAT+TGG | - | chr7.1:48664227-48664246 | None:intergenic | 50.0% | |
| ! | ATCGAAGAGCAGTTTGGTGG+TGG | + | chr7.1:48665962-48665981 | MS.gene027323:CDS | 50.0% |
| ! | CAGCACTACGGTGTTGAAGT+TGG | + | chr7.1:48665062-48665081 | MS.gene027323:CDS | 50.0% |
| ! | GCTCAAGTTTTCTCTGCACG+TGG | - | chr7.1:48665910-48665929 | None:intergenic | 50.0% |
| !! | ACAGCTTAGTATTGGCTGGC+TGG | - | chr7.1:48664812-48664831 | None:intergenic | 50.0% |
| !! | TGAATGGTGCAGCATCGACT+TGG | - | chr7.1:48665028-48665047 | None:intergenic | 50.0% |
| !! | TGCAGCATCGACTTGGACAA+TGG | - | chr7.1:48665021-48665040 | None:intergenic | 50.0% |
| ACCAGGGCGAGATGAAATGC+AGG | - | chr7.1:48665999-48666018 | None:intergenic | 55.0% | |
| AGGAGGATCCGTGTTAGAGG+TGG | + | chr7.1:48664849-48664868 | MS.gene027323:CDS | 55.0% | |
| CAGCAACAACTTCAGCCTCC+TGG | - | chr7.1:48665868-48665887 | None:intergenic | 55.0% | |
| CAGTTATGGTGGCCTGTGGA+TGG | + | chr7.1:48665182-48665201 | MS.gene027323:intron | 55.0% | |
| CTGGTGGCAAGAAGAAGAGC+TGG | + | chr7.1:48663627-48663646 | MS.gene027323:CDS | 55.0% | |
| GACTCGCAAGACTCGTCTTC+TGG | + | chr7.1:48664935-48664954 | MS.gene027323:CDS | 55.0% | |
| GATTAGGGGCCCGTTTGGAT+TGG | - | chr7.1:48664289-48664308 | None:intergenic | 55.0% | |
| GCTCTTCTTCTTGCCACCAG+TGG | - | chr7.1:48663627-48663646 | None:intergenic | 55.0% | |
| GCTTGTTCGTACCCAGACTC+TGG | + | chr7.1:48664986-48665005 | MS.gene027323:CDS | 55.0% | |
| GTCAATGTGGCAGGGCTGAT+GGG | + | chr7.1:48666017-48666036 | MS.gene027323:CDS | 55.0% | |
| GTCAGGAGGATCCGTGTTAG+AGG | + | chr7.1:48664846-48664865 | MS.gene027323:CDS | 55.0% | |
| TCATCTCGCCCTGGTCAATG+TGG | + | chr7.1:48666004-48666023 | MS.gene027323:CDS | 55.0% | |
| TGCGTAAGCGCCAATCCGAA+AGG | + | chr7.1:48664214-48664233 | MS.gene027323:intron | 55.0% | |
| CAGCCCTGCCACATTGACCA+GGG | - | chr7.1:48666015-48666034 | None:intergenic | 60.0% | |
| GCCTGCATTTCATCTCGCCC+TGG | + | chr7.1:48665995-48666014 | MS.gene027323:CDS | 60.0% | |
| GGTCAATGTGGCAGGGCTGA+TGG | + | chr7.1:48666016-48666035 | MS.gene027323:CDS | 60.0% | |
| TCAGCCCTGCCACATTGACC+AGG | - | chr7.1:48666016-48666035 | None:intergenic | 60.0% | |
| TCGCCCTGGTCAATGTGGCA+GGG | + | chr7.1:48666009-48666028 | MS.gene027323:CDS | 60.0% | |
| ! | ATGCACAAGAGGCGTGCCAC+TGG | + | chr7.1:48663608-48663627 | MS.gene027323:CDS | 60.0% |
| CTCGCCCTGGTCAATGTGGC+AGG | + | chr7.1:48666008-48666027 | MS.gene027323:CDS | 65.0% | |
| ! | CACAAGAGGCGTGCCACTGG+TGG | + | chr7.1:48663611-48663630 | MS.gene027323:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 48663608 | 48666208 | 48663608 | ID=MS.gene027323 |
| chr7.1 | mRNA | 48663608 | 48666208 | 48663608 | ID=MS.gene027323.t1;Parent=MS.gene027323 |
| chr7.1 | exon | 48663608 | 48663663 | 48663608 | ID=MS.gene027323.t1.exon1;Parent=MS.gene027323.t1 |
| chr7.1 | CDS | 48663608 | 48663663 | 48663608 | ID=cds.MS.gene027323.t1;Parent=MS.gene027323.t1 |
| chr7.1 | exon | 48664794 | 48665124 | 48664794 | ID=MS.gene027323.t1.exon2;Parent=MS.gene027323.t1 |
| chr7.1 | CDS | 48664794 | 48665124 | 48664794 | ID=cds.MS.gene027323.t1;Parent=MS.gene027323.t1 |
| chr7.1 | exon | 48665869 | 48666038 | 48665869 | ID=MS.gene027323.t1.exon3;Parent=MS.gene027323.t1 |
| chr7.1 | CDS | 48665869 | 48666038 | 48665869 | ID=cds.MS.gene027323.t1;Parent=MS.gene027323.t1 |
| chr7.1 | exon | 48666133 | 48666208 | 48666133 | ID=MS.gene027323.t1.exon4;Parent=MS.gene027323.t1 |
| chr7.1 | CDS | 48666133 | 48666208 | 48666133 | ID=cds.MS.gene027323.t1;Parent=MS.gene027323.t1 |
| Gene Sequence |
| Protein sequence |
