Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027846.t1 | ABY48141.1 | 99.4 | 700 | 4 | 0 | 1 | 700 | 1 | 700 | 0.00E+00 | 1317.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027846.t1 | Q94AM1 | 80.1 | 693 | 138 | 0 | 8 | 700 | 95 | 787 | 0.0e+00 | 1134.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027846.t1 | G7KGF6 | 99.4 | 700 | 4 | 0 | 1 | 700 | 87 | 786 | 0.0e+00 | 1317.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79528 | MS.gene027846 | PPI |
| MS.gene027846 | MS.gene33343 | PPI |
| MS.gene33341 | MS.gene027846 | PPI |
| MS.gene79525 | MS.gene027846 | PPI |
| MS.gene033999 | MS.gene027846 | PPI |
| MS.gene24891 | MS.gene027846 | PPI |
| MS.gene034002 | MS.gene027846 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027846.t1 | MTR_5g030940 | 99.429 | 700 | 4 | 0 | 1 | 700 | 87 | 786 | 0.0 | 1436 |
| MS.gene027846.t1 | MTR_3g086000 | 27.444 | 583 | 375 | 17 | 113 | 687 | 153 | 695 | 2.45e-53 | 196 |
| MS.gene027846.t1 | MTR_3g009160 | 24.247 | 664 | 453 | 17 | 51 | 698 | 66 | 695 | 7.24e-51 | 189 |
| MS.gene027846.t1 | MTR_3g009160 | 25.085 | 586 | 391 | 16 | 129 | 698 | 2 | 555 | 1.99e-48 | 180 |
| MS.gene027846.t1 | MTR_3g009160 | 23.620 | 652 | 440 | 18 | 51 | 698 | 66 | 663 | 3.29e-42 | 163 |
| MS.gene027846.t1 | MTR_3g009160 | 27.231 | 437 | 295 | 13 | 266 | 698 | 106 | 523 | 9.75e-42 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027846.t1 | AT5G10540 | 81.662 | 698 | 128 | 0 | 3 | 700 | 2 | 699 | 0.0 | 1210 |
| MS.gene027846.t1 | AT5G65620 | 83.694 | 693 | 113 | 0 | 8 | 700 | 109 | 801 | 0.0 | 1208 |
| MS.gene027846.t1 | AT5G65620 | 83.694 | 693 | 113 | 0 | 8 | 700 | 95 | 787 | 0.0 | 1207 |
| MS.gene027846.t1 | AT1G67690 | 26.449 | 552 | 364 | 16 | 147 | 692 | 187 | 702 | 2.52e-50 | 187 |
| MS.gene027846.t1 | AT5G51540 | 24.540 | 652 | 438 | 18 | 54 | 685 | 67 | 684 | 3.61e-49 | 184 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTACCTTCTCAGTTTA+TGG | 0.075843 | 5.2:-20988635 | MS.gene027846:CDS |
| GAGACTGTCTTCCATGAATT+TGG | 0.185712 | 5.2:-20988736 | MS.gene027846:CDS |
| GGATAGGTTGGCTGTTGTTT+GGG | 0.205666 | 5.2:-20993694 | MS.gene027846:CDS |
| TCGTGCTCTTCTTGAGAAAT+TGG | 0.224630 | 5.2:-20994337 | MS.gene027846:intron |
| TAAGAACTGCCTCCTTTATT+TGG | 0.229698 | 5.2:+20992585 | None:intergenic |
| AGCTTCTGATATACCTCTTC+TGG | 0.235782 | 5.2:+20988421 | None:intergenic |
| TGGATAGGTTGGCTGTTGTT+TGG | 0.249872 | 5.2:-20993695 | MS.gene027846:CDS |
| TTGATTTAGAAAGACTTTAA+TGG | 0.272313 | 5.2:-20988479 | MS.gene027846:intron |
| CTCAAGAAGAGCACGAATTC+CGG | 0.279901 | 5.2:+20994344 | None:intergenic |
| CTTCTCAGTTTATGGAAAAC+TGG | 0.306346 | 5.2:-20988627 | MS.gene027846:CDS |
| CACTTCAGCACATGCTTACT+AGG | 0.306581 | 5.2:-20988708 | MS.gene027846:CDS |
| AGCTTCAGTCATATATTTGC+AGG | 0.317151 | 5.2:-20987704 | MS.gene027846:intron |
| AAAATTTGGGGAGAACGTTC+TGG | 0.328152 | 5.2:-20991940 | MS.gene027846:CDS |
| AGGGAGACCATTCTTGCTCT+TGG | 0.328299 | 5.2:-20986864 | MS.gene027846:CDS |
| GGATTACCTGCTACTGCTCT+TGG | 0.328426 | 5.2:-20991867 | MS.gene027846:CDS |
| ATAAAGGAGGCAGTTCTTAA+TGG | 0.339071 | 5.2:-20992581 | MS.gene027846:CDS |
| CACATTGGGACATTAGCTTT+TGG | 0.345362 | 5.2:-20990947 | MS.gene027846:CDS |
| GCCTAAGTTGGTAGAACCTT+TGG | 0.345693 | 5.2:-20993727 | MS.gene027846:CDS |
| TGATTTAGAAAGACTTTAAT+GGG | 0.346240 | 5.2:-20988478 | MS.gene027846:intron |
| TCGAGCATCGAGTGGTGATT+TGG | 0.351443 | 5.2:-20991599 | MS.gene027846:CDS |
| TTTATCAACAGTTGCCATCT+TGG | 0.353309 | 5.2:+20991421 | None:intergenic |
| CAATGGCCTAATTGCAGCTT+AGG | 0.354065 | 5.2:-20986577 | None:intergenic |
| GGGTCTAGTTGCTGGCATTA+GGG | 0.359179 | 5.2:-20988677 | MS.gene027846:CDS |
| AGGGTCTAGTTGCTGGCATT+AGG | 0.366320 | 5.2:-20988678 | MS.gene027846:CDS |
| TTCTCTGCATTTGAGGATGC+AGG | 0.375358 | 5.2:-20987152 | MS.gene027846:CDS |
| TAGAAACGGGACACAAGTTC+AGG | 0.377165 | 5.2:-20986884 | MS.gene027846:CDS |
| AGAAGCTTCGTAAAGCTTCC+TGG | 0.381601 | 5.2:-20991382 | MS.gene027846:CDS |
| TCAAGAAGAGCACGAATTCC+GGG | 0.382633 | 5.2:+20994345 | None:intergenic |
| CTTCATACAAAATATGTTCC+TGG | 0.382795 | 5.2:-20987815 | MS.gene027846:CDS |
| GGTCTTTAGAAAATTTCTTA+AGG | 0.383307 | 5.2:+20990997 | None:intergenic |
| AGTGCCAGCACGAAAAGTTC+TGG | 0.390269 | 5.2:+20988390 | None:intergenic |
| AGATGCTTTCTCTGCATTTG+AGG | 0.398525 | 5.2:-20987159 | MS.gene027846:CDS |
| AACGGAGTGTGGAACCTTCA+TGG | 0.403752 | 5.2:-20993749 | MS.gene027846:CDS |
| GAAGATGAGGGTCTAGTTGC+TGG | 0.404349 | 5.2:-20988685 | MS.gene027846:CDS |
| CGATTCAAGACTCTCCTGAT+TGG | 0.407241 | 5.2:-20993087 | MS.gene027846:CDS |
| AAAATTTGCAACTGTCGATC+TGG | 0.407728 | 5.2:-20987840 | MS.gene027846:CDS |
| TACCTTTGCAGACCAAATAA+AGG | 0.408649 | 5.2:-20992597 | MS.gene027846:intron |
| TCTGCGATCAACATCATAGA+TGG | 0.409287 | 5.2:+20987781 | None:intergenic |
| GATTACCTGCTACTGCTCTT+GGG | 0.426451 | 5.2:-20991866 | MS.gene027846:CDS |
| GAAAATGCCACCGCTGAGAA+TGG | 0.428871 | 5.2:-20991721 | MS.gene027846:CDS |
| AAGAGTCCATCCATAACATT+TGG | 0.435222 | 5.2:+20990238 | None:intergenic |
| TGTTCTGTAGGAACGTGATT+TGG | 0.437308 | 5.2:-20993781 | MS.gene027846:intron |
| ACAGTTTAACAAAATTGAAC+AGG | 0.437317 | 5.2:-20992531 | MS.gene027846:intron |
| GATAGGTTGGCTGTTGTTTG+GGG | 0.438512 | 5.2:-20993693 | MS.gene027846:CDS |
| ACCTGCTACTGCTCTTGGGT+TGG | 0.439003 | 5.2:-20991862 | MS.gene027846:CDS |
| TACACAGGCTGTTATAGAAA+CGG | 0.443561 | 5.2:-20986898 | MS.gene027846:intron |
| AAACTTGGCTTGCTTCCTAC+TGG | 0.443627 | 5.2:+20989862 | None:intergenic |
| TCGCTAAGTGTCTTCCAATC+AGG | 0.444065 | 5.2:+20993073 | None:intergenic |
| TTTAAAGCTGAGGTTGGAAA+AGG | 0.445783 | 5.2:-20991551 | MS.gene027846:CDS |
| ACACAGGCTGTTATAGAAAC+GGG | 0.446996 | 5.2:-20986897 | MS.gene027846:intron |
| AGCTGATGATTTGACACATT+GGG | 0.453880 | 5.2:-20990961 | MS.gene027846:CDS |
| TAATCATCTCAAAGCTGTTA+AGG | 0.456249 | 5.2:-20993664 | MS.gene027846:CDS |
| TGCATTTGAGGATGCAGGAT+TGG | 0.466218 | 5.2:-20987147 | MS.gene027846:CDS |
| TTCTAAAGACCAGGGTGCAT+TGG | 0.468313 | 5.2:-20990985 | MS.gene027846:CDS |
| TTGTGTCTGAGCAAGGCATC+TGG | 0.471549 | 5.2:+20986597 | None:intergenic |
| TTCATACAAAATATGTTCCT+GGG | 0.472245 | 5.2:-20987814 | MS.gene027846:CDS |
| ACCTTGTACTGCAGCATCCC+AGG | 0.474341 | 5.2:+20991364 | None:intergenic |
| TCTATCCCTAAGCTGCAATT+AGG | 0.480447 | 5.2:+20986571 | None:intergenic |
| AAAATGCCACCGCTGAGAAT+GGG | 0.481659 | 5.2:-20991720 | MS.gene027846:CDS |
| GTTATTGTAGTTGAGAAGCT+TGG | 0.482142 | 5.2:+20991528 | None:intergenic |
| GAAGTGCGTGGCCAAATTCA+TGG | 0.485517 | 5.2:+20988725 | None:intergenic |
| GCCGCCTCCAAGAGCAAGAA+TGG | 0.486213 | 5.2:+20986857 | None:intergenic |
| GAGACCATTCTTGCTCTTGG+AGG | 0.489208 | 5.2:-20986861 | MS.gene027846:CDS |
| CTGCAAAGGAACCTGTCCTC+TGG | 0.491017 | 5.2:+20987725 | None:intergenic |
| TCCTGGGATGCTGCAGTACA+AGG | 0.493226 | 5.2:-20991365 | MS.gene027846:intron |
| GCTTCTGATATACCTCTTCT+GGG | 0.494204 | 5.2:+20988422 | None:intergenic |
| AAAGTTTGAAAAGCTCATTA+CGG | 0.495137 | 5.2:-20991907 | MS.gene027846:CDS |
| TTCGCTTCAACAACATCAAA+AGG | 0.496202 | 5.2:+20994378 | None:intergenic |
| TTCCTCCATTGCCAGAGGAC+AGG | 0.496689 | 5.2:-20987736 | MS.gene027846:CDS |
| TCACGGAATGTCATTAAACT+TGG | 0.498854 | 5.2:+20989847 | None:intergenic |
| ATCAAGAGCAGAAGCAGCCA+TGG | 0.501446 | 5.2:+20994440 | None:intergenic |
| AAGTACCTGCACATCTTCAA+TGG | 0.503459 | 5.2:+20993620 | None:intergenic |
| TCCAAAGGTTCTACCAACTT+AGG | 0.505439 | 5.2:+20993726 | None:intergenic |
| TTGTTAGGTGGATATGCAGC+TGG | 0.507023 | 5.2:-20987346 | MS.gene027846:intron |
| ACCATTCTTGCTCTTGGAGG+CGG | 0.508779 | 5.2:-20986858 | MS.gene027846:CDS |
| CGCCTGATGGTAACTCATCA+AGG | 0.512302 | 5.2:-20989921 | MS.gene027846:CDS |
| AGGAACCTGTCCTCTGGCAA+TGG | 0.512749 | 5.2:+20987731 | None:intergenic |
| GCCAGCTGACGGTCTAGCTC+CGG | 0.513713 | 5.2:-20990179 | MS.gene027846:intron |
| TCTACCAACTTAGGCCATGA+AGG | 0.514387 | 5.2:+20993735 | None:intergenic |
| GCCAACCCAAGAGCAGTAGC+AGG | 0.516424 | 5.2:+20991861 | None:intergenic |
| GCTTTGAACGCATTATAAAG+AGG | 0.517387 | 5.2:+20993109 | None:intergenic |
| ACGGATAAGAAGGAGATTGA+AGG | 0.520338 | 5.2:-20991888 | MS.gene027846:CDS |
| TTCAGCCATTGAAGATGTGC+AGG | 0.521027 | 5.2:-20993625 | MS.gene027846:intron |
| TCTCTGCCAAATGTTATGGA+TGG | 0.522804 | 5.2:-20990244 | MS.gene027846:CDS |
| AACCTTGATGAGTTACCATC+AGG | 0.524848 | 5.2:+20989919 | None:intergenic |
| CTGAGCAAGGCATCTGGTGT+TGG | 0.525539 | 5.2:+20986603 | None:intergenic |
| ACCGGAGCTAGACCGTCAGC+TGG | 0.526971 | 5.2:+20990178 | None:intergenic |
| ATAGGTTGGCTGTTGTTTGG+GGG | 0.531375 | 5.2:-20993692 | MS.gene027846:CDS |
| GGAGAAGATTGTGGATAGGT+TGG | 0.537085 | 5.2:-20993706 | MS.gene027846:CDS |
| TGCATGACTGCAATATAACT+TGG | 0.537134 | 5.2:+20991673 | None:intergenic |
| CATTATCTTTCAGGTTAGCA+TGG | 0.537812 | 5.2:-20991447 | MS.gene027846:intron |
| AGAACCTTTGGAGAAGATTG+TGG | 0.540574 | 5.2:-20993715 | MS.gene027846:CDS |
| GAAGCTTCGTAAAGCTTCCT+GGG | 0.542327 | 5.2:-20991381 | MS.gene027846:CDS |
| ATATATGACTGAAGCTGCAA+AGG | 0.544572 | 5.2:+20987711 | None:intergenic |
| TCTGTAGGAACGTGATTTGG+AGG | 0.549045 | 5.2:-20993778 | MS.gene027846:intron |
| AAAGCTCATTACGGATAAGA+AGG | 0.549373 | 5.2:-20991898 | MS.gene027846:CDS |
| AGTCGTGTACTGTCGCCTGA+TGG | 0.549429 | 5.2:-20989934 | MS.gene027846:CDS |
| TGCACAAAGCGCAGTATCCA+AGG | 0.551803 | 5.2:-20991838 | MS.gene027846:intron |
| AATGGCCTAATTGCAGCTTA+GGG | 0.552948 | 5.2:-20986576 | None:intergenic |
| GGTTAGCATGGCAACCAAGA+TGG | 0.553217 | 5.2:-20991435 | MS.gene027846:CDS |
| GGAGGAGCTTGAACGGAGTG+TGG | 0.554314 | 5.2:-20993760 | MS.gene027846:CDS |
| CTGGTGTTGGTTCTCTCCCA+CGG | 0.555391 | 5.2:+20986616 | None:intergenic |
| GTGATTTGGAGGAGCTTGAA+CGG | 0.556023 | 5.2:-20993767 | MS.gene027846:CDS |
| CAGGTGTTTGTGCAATTCCG+TGG | 0.556565 | 5.2:-20986633 | MS.gene027846:CDS |
| TGGCACTCAAAGTCTTCGAC+AGG | 0.557047 | 5.2:-20988374 | MS.gene027846:intron |
| CTTTGGAGAAGATTGTGGAT+AGG | 0.559597 | 5.2:-20993710 | MS.gene027846:CDS |
| TTCATCCATAGGAGCTGGAA+AGG | 0.560102 | 5.2:-20991971 | MS.gene027846:intron |
| GTTAAGTTTCAGCTTAGACT+AGG | 0.564326 | 5.2:-20993142 | MS.gene027846:CDS |
| TGGCATTAGGGGAATTGAGT+GGG | 0.568397 | 5.2:-20988665 | MS.gene027846:CDS |
| GGAACCTTCATGGCCTAAGT+TGG | 0.569889 | 5.2:-20993739 | MS.gene027846:CDS |
| TTACACACCATGTGGGCCAC+AGG | 0.572102 | 5.2:+20989895 | None:intergenic |
| AAGGTTGCCTGTGGCCCACA+TGG | 0.572152 | 5.2:-20989902 | MS.gene027846:CDS |
| AGAAACGGGACACAAGTTCA+GGG | 0.573791 | 5.2:-20986883 | MS.gene027846:CDS |
| GGTCTAGTTGCTGGCATTAG+GGG | 0.574365 | 5.2:-20988676 | MS.gene027846:CDS |
| AACCTGTCCTCTGGCAATGG+AGG | 0.576528 | 5.2:+20987734 | None:intergenic |
| TGGGCCATGGGTAATTACAT+TGG | 0.581788 | 5.2:-20991701 | MS.gene027846:CDS |
| GAAGCGAAGCATGTGAGACC+CGG | 0.583939 | 5.2:-20994363 | MS.gene027846:CDS |
| CTTGGCTTGCTTCCTACTGG+AGG | 0.587354 | 5.2:+20989865 | None:intergenic |
| CACCGCTGAGAATGGGCCAT+GGG | 0.587887 | 5.2:-20991713 | MS.gene027846:CDS |
| CATGCTTACTAGGGAAGATG+AGG | 0.588010 | 5.2:-20988698 | MS.gene027846:CDS |
| TAGGCCATTGTGTCTGAGCA+AGG | 0.589138 | 5.2:+20986590 | None:intergenic |
| CTGGCATTAGGGGAATTGAG+TGG | 0.591325 | 5.2:-20988666 | MS.gene027846:CDS |
| CTATCCACAATCTTCTCCAA+AGG | 0.594046 | 5.2:+20993711 | None:intergenic |
| CCATGGCCCATTCTCAGCGG+TGG | 0.595708 | 5.2:+20991714 | None:intergenic |
| ATCAAAATATGACATTAATG+AGG | 0.597730 | 5.2:-20990907 | MS.gene027846:intron |
| AAAACAAACTCCTTCAGAAG+AGG | 0.597850 | 5.2:+20994405 | None:intergenic |
| AGGCGGCAAGCCACCACTCG+AGG | 0.598361 | 5.2:-20986841 | MS.gene027846:intron |
| TCAATTCTCACCTCGAGTGG+TGG | 0.601180 | 5.2:+20986831 | None:intergenic |
| GCACATCTTCAATGGCTGAA+CGG | 0.602014 | 5.2:+20993628 | None:intergenic |
| AGACTTCCTCACGCAGAGAA+CGG | 0.603003 | 5.2:+20991638 | None:intergenic |
| GCATCCAATGTAATTACCCA+TGG | 0.603781 | 5.2:+20991697 | None:intergenic |
| CCACCGCTGAGAATGGGCCA+TGG | 0.605460 | 5.2:-20991714 | MS.gene027846:CDS |
| ACTTCAGCACATGCTTACTA+GGG | 0.608687 | 5.2:-20988707 | MS.gene027846:CDS |
| ATCTCAATTCTCACCTCGAG+TGG | 0.610817 | 5.2:+20986828 | None:intergenic |
| TGCAGGATTGGATGATAACA+AGG | 0.611790 | 5.2:-20987135 | MS.gene027846:intron |
| AGCTGGATACTATAGCTACA+AGG | 0.613270 | 5.2:-20987329 | MS.gene027846:intron |
| TGGGGAAACTCTCCCAGAAG+AGG | 0.616047 | 5.2:-20988434 | MS.gene027846:CDS |
| ATTGAAATTGAGCCAGCTGA+CGG | 0.620834 | 5.2:-20990190 | MS.gene027846:CDS |
| AAGCTGATGATTTGACACAT+TGG | 0.621920 | 5.2:-20990962 | MS.gene027846:CDS |
| TCGCAACCGTTCTCTGCGTG+AGG | 0.623634 | 5.2:-20991644 | MS.gene027846:CDS |
| TGAAGCTAATCCTCTTCTGA+AGG | 0.624939 | 5.2:-20994415 | MS.gene027846:CDS |
| CATCAGCTTCCAATGCACCC+TGG | 0.627389 | 5.2:+20990976 | None:intergenic |
| ATGCTCGAGTTAAGTATGCA+TGG | 0.628688 | 5.2:+20991614 | None:intergenic |
| ATAGGCAACTGGACTTCCTG+AGG | 0.629024 | 5.2:+20990029 | None:intergenic |
| GATGCCTTGCTCAGACACAA+TGG | 0.634747 | 5.2:-20986594 | MS.gene027846:CDS |
| TCATACAAAATATGTTCCTG+GGG | 0.636482 | 5.2:-20987813 | MS.gene027846:CDS |
| TACTTAACTCGAGCATCGAG+TGG | 0.641414 | 5.2:-20991607 | MS.gene027846:CDS |
| GCCAGCACGAAAAGTTCTGG+CGG | 0.653355 | 5.2:+20988393 | None:intergenic |
| TAACTCATCAAGGTTGCCTG+TGG | 0.655153 | 5.2:-20989911 | MS.gene027846:CDS |
| AGGTGTTTGTGCAATTCCGT+GGG | 0.656111 | 5.2:-20986632 | MS.gene027846:CDS |
| CAACTACAATAACTATGCAG+AGG | 0.660462 | 5.2:-20991518 | MS.gene027846:intron |
| TGTAATCAAACACCTCCAGT+AGG | 0.665268 | 5.2:-20989877 | MS.gene027846:CDS |
| GTGTTTGATTACACACCATG+TGG | 0.672174 | 5.2:+20989887 | None:intergenic |
| AGTGATTCCTCCATTGCCAG+AGG | 0.676653 | 5.2:-20987741 | MS.gene027846:CDS |
| CTTTGCAGACCAAATAAAGG+AGG | 0.678762 | 5.2:-20992594 | MS.gene027846:intron |
| GCTTCAACAACATCAAAAGG+AGG | 0.685808 | 5.2:+20994381 | None:intergenic |
| TGTTTGATTACACACCATGT+GGG | 0.687368 | 5.2:+20989888 | None:intergenic |
| TACCCATGGCCCATTCTCAG+CGG | 0.698386 | 5.2:+20991711 | None:intergenic |
| ATGCTTACTAGGGAAGATGA+GGG | 0.713385 | 5.2:-20988697 | MS.gene027846:CDS |
| TAAGCATGTGCTGAAGTGCG+TGG | 0.717992 | 5.2:+20988713 | None:intergenic |
| AAGTTTAATGACATTCCGTG+AGG | 0.718648 | 5.2:-20989845 | MS.gene027846:intron |
| CATACAAAATATGTTCCTGG+GGG | 0.748795 | 5.2:-20987812 | MS.gene027846:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 20986578 | 20994460 | 20986578 | ID=MS.gene027846 |
| chr5.2 | mRNA | 20986578 | 20994460 | 20986578 | ID=MS.gene027846.t1;Parent=MS.gene027846 |
| chr5.2 | exon | 20994338 | 20994460 | 20994338 | ID=MS.gene027846.t1.exon1;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20994338 | 20994460 | 20994338 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20993626 | 20993793 | 20993626 | ID=MS.gene027846.t1.exon2;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20993626 | 20993793 | 20993626 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20993050 | 20993173 | 20993050 | ID=MS.gene027846.t1.exon3;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20993050 | 20993173 | 20993050 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20992532 | 20992608 | 20992532 | ID=MS.gene027846.t1.exon4;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20992532 | 20992608 | 20992532 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20991839 | 20991982 | 20991839 | ID=MS.gene027846.t1.exon5;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20991839 | 20991982 | 20991839 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20991519 | 20991749 | 20991519 | ID=MS.gene027846.t1.exon6;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20991519 | 20991749 | 20991519 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20991366 | 20991456 | 20991366 | ID=MS.gene027846.t1.exon7;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20991366 | 20991456 | 20991366 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20990908 | 20991029 | 20990908 | ID=MS.gene027846.t1.exon8;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20990908 | 20991029 | 20990908 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20990180 | 20990287 | 20990180 | ID=MS.gene027846.t1.exon9;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20990180 | 20990287 | 20990180 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20989846 | 20990091 | 20989846 | ID=MS.gene027846.t1.exon10;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20989846 | 20990091 | 20989846 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20988616 | 20988761 | 20988616 | ID=MS.gene027846.t1.exon11;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20988616 | 20988761 | 20988616 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20988375 | 20988492 | 20988375 | ID=MS.gene027846.t1.exon12;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20988375 | 20988492 | 20988375 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20987705 | 20987864 | 20987705 | ID=MS.gene027846.t1.exon13;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20987705 | 20987864 | 20987705 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20987330 | 20987361 | 20987330 | ID=MS.gene027846.t1.exon14;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20987330 | 20987361 | 20987330 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20987136 | 20987201 | 20987136 | ID=MS.gene027846.t1.exon15;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20987136 | 20987201 | 20987136 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20986842 | 20986913 | 20986842 | ID=MS.gene027846.t1.exon16;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20986842 | 20986913 | 20986842 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| chr5.2 | exon | 20986578 | 20986652 | 20986578 | ID=MS.gene027846.t1.exon17;Parent=MS.gene027846.t1 |
| chr5.2 | CDS | 20986578 | 20986652 | 20986578 | ID=cds.MS.gene027846.t1;Parent=MS.gene027846.t1 |
| Gene Sequence |
| Protein sequence |
