AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028654

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028654.t1 MTR_2g095750 97.461 512 12 1 1 512 1 511 0.0 1045
MS.gene028654.t1 MTR_2g095730 77.713 516 97 5 1 509 1 505 0.0 824
MS.gene028654.t1 MTR_2g095710 73.465 505 108 6 1 501 1 483 0.0 743
MS.gene028654.t1 MTR_4g057595 68.153 471 141 5 38 503 32 498 0.0 673
MS.gene028654.t1 MTR_1g094155 66.875 480 148 4 39 509 20 497 0.0 670
MS.gene028654.t1 MTR_4g057585 68.696 460 135 5 46 500 39 494 0.0 669
MS.gene028654.t1 MTR_4g057600 66.231 459 148 4 46 500 38 493 0.0 643
MS.gene028654.t1 MTR_1g050545 63.327 499 164 7 14 507 5 489 0.0 640
MS.gene028654.t1 MTR_4g057570 60.480 458 167 8 51 500 40 491 0.0 553
MS.gene028654.t1 MTR_5g097180 32.847 411 256 8 97 499 37 435 1.66e-66 222
MS.gene028654.t1 MTR_4g084710 32.360 411 258 7 97 499 39 437 4.19e-64 215
MS.gene028654.t1 MTR_3g079560 29.812 426 246 13 101 501 92 489 3.00e-52 185
MS.gene028654.t1 MTR_3g434850 30.505 436 246 17 101 503 44 455 1.07e-51 182
MS.gene028654.t1 MTR_3g079590 28.571 448 261 13 79 500 74 488 1.18e-50 181
MS.gene028654.t1 MTR_1g020090 30.166 421 250 11 98 500 101 495 1.30e-50 181
MS.gene028654.t1 MTR_1g021010 29.742 427 241 13 101 500 90 484 2.17e-50 180
MS.gene028654.t1 MTR_8g011350 28.051 467 254 13 101 501 45 495 2.31e-49 177
MS.gene028654.t1 MTR_7g051430 27.349 479 263 14 86 498 33 492 6.10e-49 176
MS.gene028654.t1 MTR_3g079570 28.635 447 261 14 79 500 75 488 1.24e-48 175
MS.gene028654.t1 MTR_3g079600 29.147 422 255 12 101 500 90 489 1.61e-47 172
MS.gene028654.t1 MTR_1g021020 29.187 418 254 11 101 500 92 485 2.91e-47 171
MS.gene028654.t1 MTR_3g079620 29.515 454 263 14 79 503 74 499 3.96e-47 171
MS.gene028654.t1 MTR_3g498755 27.790 457 279 16 72 499 8 442 1.21e-46 169
MS.gene028654.t1 MTR_7g021130 29.466 431 248 18 103 499 46 454 1.24e-46 169
MS.gene028654.t1 MTR_1g040370 30.147 408 233 15 103 499 46 412 1.34e-46 167
MS.gene028654.t1 MTR_2g063000 29.157 439 248 15 101 503 53 464 1.46e-46 169
MS.gene028654.t1 MTR_3g034290 28.947 418 264 15 98 498 85 486 1.60e-46 169
MS.gene028654.t1 MTR_2g081620 28.605 430 260 12 101 503 55 464 1.90e-46 169
MS.gene028654.t1 MTR_7g051430 34.944 269 153 5 86 349 33 284 6.67e-46 166
MS.gene028654.t1 MTR_2g062990 28.972 428 261 13 101 503 54 463 8.38e-46 167
MS.gene028654.t1 MTR_2g449850 29.091 440 249 18 96 499 47 459 9.51e-46 166
MS.gene028654.t1 MTR_2g018590 27.174 460 280 12 77 501 30 469 1.32e-45 166
MS.gene028654.t1 MTR_4g122960 27.009 448 262 13 99 503 51 476 1.50e-45 166
MS.gene028654.t1 MTR_8g099930 27.610 431 262 17 101 499 47 459 1.06e-44 164
MS.gene028654.t1 MTR_2g062980 28.878 419 273 12 101 503 54 463 1.16e-44 164
MS.gene028654.t1 MTR_0003s0560 28.009 432 258 14 93 498 79 483 1.26e-44 164
MS.gene028654.t1 MTR_4g122950 26.697 442 273 14 99 503 51 478 3.29e-44 163
MS.gene028654.t1 MTR_3g079630 27.655 452 268 14 79 500 74 496 6.88e-44 162
MS.gene028654.t1 MTR_5g072570 28.222 450 290 14 78 501 18 460 9.74e-44 161
MS.gene028654.t1 MTR_4g089155 26.411 443 271 12 93 499 59 482 1.43e-43 161
MS.gene028654.t1 MTR_4g075150 28.806 427 260 14 101 499 48 458 2.15e-43 160
MS.gene028654.t1 MTR_2g018600 25.977 435 271 12 103 501 50 469 4.14e-43 159
MS.gene028654.t1 MTR_4g075150 28.169 426 266 12 101 499 48 460 1.05e-42 158
MS.gene028654.t1 MTR_7g080180 36.782 261 141 8 101 349 42 290 1.44e-42 158
MS.gene028654.t1 MTR_7g080180 36.782 261 141 8 101 349 42 290 2.20e-42 158
MS.gene028654.t1 MTR_4g021510 29.322 457 266 18 72 495 31 463 4.88e-42 156
MS.gene028654.t1 MTR_8g011350 27.273 440 238 13 101 474 45 468 5.77e-42 156
MS.gene028654.t1 MTR_3g090130 27.563 439 271 14 93 501 34 455 1.52e-41 155
MS.gene028654.t1 MTR_2g018630 27.896 423 267 12 103 499 53 463 1.65e-41 155
MS.gene028654.t1 MTR_3g045770 27.938 451 277 12 86 501 17 454 3.30e-41 154
MS.gene028654.t1 MTR_2g012860 25.113 442 278 11 93 499 47 470 3.34e-41 154
MS.gene028654.t1 MTR_1g095560 26.651 424 269 14 101 499 47 453 7.05e-41 153
MS.gene028654.t1 MTR_4g021530 28.502 414 247 14 115 496 69 465 7.09e-41 153
MS.gene028654.t1 MTR_7g013790 27.231 437 252 15 103 499 51 461 3.80e-40 151
MS.gene028654.t1 MTR_3g090150 27.739 429 285 12 93 501 39 462 4.52e-40 151
MS.gene028654.t1 MTR_4g021535 27.465 426 236 13 115 496 65 461 5.06e-40 151
MS.gene028654.t1 MTR_2g012850 26.037 434 266 12 101 499 49 462 7.34e-40 150
MS.gene028654.t1 MTR_4g021520 27.830 424 262 14 103 496 56 465 1.77e-39 149
MS.gene028654.t1 MTR_4g021490 27.511 458 275 17 72 496 32 465 2.43e-39 149
MS.gene028654.t1 MTR_1g095540 25.587 426 271 12 101 499 47 453 7.99e-38 144
MS.gene028654.t1 MTR_3g034290 29.552 335 209 13 98 416 85 408 1.32e-37 143
MS.gene028654.t1 MTR_1g095560 26.174 447 274 16 101 499 47 485 1.71e-37 144
MS.gene028654.t1 MTR_4g021500 26.812 414 254 13 115 496 504 900 2.59e-37 147
MS.gene028654.t1 MTR_4g021500 26.555 418 267 12 115 504 69 474 4.51e-37 146
MS.gene028654.t1 MTR_4g021500 26.555 418 267 12 115 504 69 474 4.58e-37 146
MS.gene028654.t1 MTR_4g021500 27.068 399 254 14 115 496 504 882 4.58e-36 143
MS.gene028654.t1 MTR_3g100420 25.170 441 294 10 86 496 57 491 2.08e-36 141
MS.gene028654.t1 MTR_4g021520 28.165 387 235 13 103 460 56 428 6.23e-34 133
MS.gene028654.t1 MTR_0003s0560 30.859 256 158 7 93 345 79 318 1.93e-33 130
MS.gene028654.t1 MTR_2g063000 25.917 436 235 14 101 503 53 433 2.43e-33 132
MS.gene028654.t1 MTR_4g056520 26.824 425 256 12 114 497 44 454 5.93e-33 131
MS.gene028654.t1 MTR_2g009200 24.401 459 270 15 74 497 19 435 4.62e-30 122
MS.gene028654.t1 MTR_2g084530 26.562 448 279 13 84 492 11 447 4.20e-26 111
MS.gene028654.t1 MTR_2g018630 25.419 358 234 10 163 499 13 358 4.06e-24 103
MS.gene028654.t1 MTR_1g102130 25.114 438 230 21 103 499 107 487 4.51e-23 102
MS.gene028654.t1 MTR_4g021535 23.709 426 205 16 115 496 65 414 6.70e-21 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028654.t1 AT3G45010 66.068 501 160 5 12 505 8 505 0.0 690
MS.gene028654.t1 AT3G10410 62.598 508 167 6 5 502 4 498 0.0 674
MS.gene028654.t1 AT5G22980 62.450 498 176 5 13 503 5 498 0.0 645
MS.gene028654.t1 AT5G22960 62.874 167 42 2 95 261 28 174 1.75e-67 216
MS.gene028654.t1 AT1G15000 30.488 410 262 9 97 499 31 424 3.53e-54 189
MS.gene028654.t1 AT3G25420 28.541 466 253 13 101 501 44 494 1.88e-52 185
MS.gene028654.t1 AT1G73300 29.062 437 254 14 86 499 36 439 5.15e-52 183
MS.gene028654.t1 AT1G73300 29.062 437 254 14 86 499 36 439 5.15e-52 183
MS.gene028654.t1 AT3G12203 27.626 438 265 16 89 499 2 414 1.54e-51 181
MS.gene028654.t1 AT3G12203 27.231 437 268 14 89 499 23 435 3.84e-51 181
MS.gene028654.t1 AT2G22920 29.025 441 272 16 73 498 18 432 5.10e-50 177
MS.gene028654.t1 AT3G12203 27.930 401 248 13 116 499 1 377 7.64e-50 176
MS.gene028654.t1 AT2G22970 28.281 442 274 16 73 499 18 431 1.09e-49 176
MS.gene028654.t1 AT5G36180 28.571 441 253 15 85 499 35 439 9.60e-49 174
MS.gene028654.t1 AT1G73280 27.918 437 261 15 85 499 35 439 1.02e-48 174
MS.gene028654.t1 AT3G17180 28.894 443 254 15 98 499 50 472 1.17e-48 175
MS.gene028654.t1 AT1G73290 27.126 435 263 14 86 499 35 436 1.99e-48 173
MS.gene028654.t1 AT4G12910 28.216 482 258 15 86 501 38 497 2.25e-48 174
MS.gene028654.t1 AT5G23210 29.933 451 249 15 101 503 65 496 6.20e-48 173
MS.gene028654.t1 AT2G22980 28.090 445 268 18 73 499 18 428 1.29e-47 171
MS.gene028654.t1 AT3G52000 28.125 416 261 11 101 497 78 474 1.69e-47 172
MS.gene028654.t1 AT1G73270 25.747 435 277 13 85 501 35 441 4.39e-47 170
MS.gene028654.t1 AT1G73270 25.747 435 277 13 85 501 35 441 5.10e-47 170
MS.gene028654.t1 AT2G23010 27.354 446 277 15 73 499 18 435 1.35e-46 168
MS.gene028654.t1 AT4G15100 28.306 431 265 14 101 498 58 477 1.71e-46 169
MS.gene028654.t1 AT1G73310 27.381 420 253 12 103 499 49 439 2.82e-46 167
MS.gene028654.t1 AT2G23010 27.354 446 277 15 73 499 18 435 2.88e-46 167
MS.gene028654.t1 AT3G10450 27.714 433 267 16 85 499 31 435 4.42e-46 167
MS.gene028654.t1 AT2G22920 29.455 404 246 14 73 462 18 396 1.26e-45 165
MS.gene028654.t1 AT4G30810 28.046 435 264 13 99 504 50 464 1.50e-45 166
MS.gene028654.t1 AT1G28110 28.037 428 260 16 101 498 45 454 1.90e-45 166
MS.gene028654.t1 AT1G28110 28.037 428 260 16 101 498 45 454 1.90e-45 166
MS.gene028654.t1 AT4G12910 36.059 269 150 5 86 349 38 289 1.99e-45 166
MS.gene028654.t1 AT3G10450 27.361 413 258 14 105 499 4 392 2.16e-45 164
MS.gene028654.t1 AT3G63470 29.356 419 243 15 101 492 95 487 2.38e-45 166
MS.gene028654.t1 AT2G33530 28.474 439 248 18 101 499 47 459 4.29e-45 165
MS.gene028654.t1 AT2G22970 28.571 420 258 15 73 477 18 410 4.55e-45 164
MS.gene028654.t1 AT2G22970 28.401 419 258 15 73 476 18 409 6.16e-45 163
MS.gene028654.t1 AT1G73290 28.610 374 220 11 86 439 35 381 8.75e-45 162
MS.gene028654.t1 AT1G33540 27.231 437 259 15 103 499 45 462 1.05e-44 164
MS.gene028654.t1 AT3G52020 28.205 429 248 13 101 497 93 493 1.38e-44 164
MS.gene028654.t1 AT1G33540 27.126 435 258 15 105 499 4 419 2.60e-44 162
MS.gene028654.t1 AT5G08260 30.345 435 239 17 101 492 53 466 2.96e-44 163
MS.gene028654.t1 AT2G22980 27.955 440 265 18 73 494 18 423 6.59e-44 161
MS.gene028654.t1 AT2G35770 29.829 409 248 13 103 489 54 445 8.66e-44 161
MS.gene028654.t1 AT2G22980 27.962 422 253 17 73 476 18 406 8.91e-44 160
MS.gene028654.t1 AT2G22990 25.899 417 265 12 103 499 39 431 2.42e-43 159
MS.gene028654.t1 AT2G23000 26.923 442 266 13 90 499 19 435 5.76e-43 158
MS.gene028654.t1 AT2G23000 26.923 442 266 13 90 499 19 435 5.76e-43 158
MS.gene028654.t1 AT3G12240 27.570 428 244 17 102 499 43 434 6.19e-43 158
MS.gene028654.t1 AT1G61130 28.176 433 255 15 101 498 45 456 7.07e-43 159
MS.gene028654.t1 AT3G52010 27.934 426 268 12 92 497 73 479 8.64e-43 159
MS.gene028654.t1 AT1G11080 26.984 441 260 12 101 498 64 485 1.91e-42 158
MS.gene028654.t1 AT1G11080 26.984 441 260 12 101 498 64 485 2.18e-42 158
MS.gene028654.t1 AT5G23210 30.790 367 196 12 101 421 65 419 3.92e-42 156
MS.gene028654.t1 AT3G12230 28.111 434 262 17 86 499 30 433 4.55e-42 156
MS.gene028654.t1 AT3G12220 25.935 428 283 14 86 501 30 435 4.83e-42 155
MS.gene028654.t1 AT1G73310 27.415 383 228 10 103 463 49 403 5.40e-42 155
MS.gene028654.t1 AT2G24000 27.506 429 261 16 103 498 46 457 6.53e-42 156
MS.gene028654.t1 AT1G73290 31.985 272 160 7 86 343 35 295 1.62e-41 151
MS.gene028654.t1 AT1G43780 28.111 434 256 17 103 499 53 467 1.68e-41 155
MS.gene028654.t1 AT3G10450 27.561 410 252 15 85 476 31 413 1.70e-41 154
MS.gene028654.t1 AT2G24010 28.235 425 255 15 103 499 46 448 2.09e-41 154
MS.gene028654.t1 AT3G12220 25.815 399 266 12 115 501 25 405 2.34e-41 153
MS.gene028654.t1 AT5G42230 28.372 430 267 16 101 501 42 459 3.37e-41 154
MS.gene028654.t1 AT5G42230 28.372 430 267 16 101 501 42 459 3.37e-41 154
MS.gene028654.t1 AT3G07990 28.436 422 270 13 98 499 45 454 4.47e-41 154
MS.gene028654.t1 AT3G10450 27.179 390 243 13 105 476 4 370 6.45e-41 151
MS.gene028654.t1 AT2G12480 27.857 420 272 13 103 501 47 456 1.04e-40 153
MS.gene028654.t1 AT2G12480 27.873 409 262 12 103 501 47 432 3.76e-40 150
MS.gene028654.t1 AT4G30610 25.116 430 279 12 99 499 44 459 4.48e-40 151
MS.gene028654.t1 AT2G22990 26.265 415 257 13 86 478 26 413 8.43e-40 149
MS.gene028654.t1 AT2G22990 26.277 411 256 13 86 476 26 409 1.52e-39 149
MS.gene028654.t1 AT3G17180 29.306 389 220 13 98 446 50 423 1.67e-39 149
MS.gene028654.t1 AT2G12480 26.914 405 269 11 103 501 47 430 2.89e-39 148
MS.gene028654.t1 AT5G42240 26.168 428 279 14 101 501 46 463 3.17e-39 149
MS.gene028654.t1 AT5G09640 25.160 469 285 17 73 499 19 463 6.07e-39 148
MS.gene028654.t1 AT2G22920 32.484 314 182 11 73 375 18 312 8.14e-39 144
MS.gene028654.t1 AT2G12480 26.601 406 270 11 103 501 47 431 1.18e-38 147
MS.gene028654.t1 AT1G73280 31.546 317 179 10 85 383 35 331 2.98e-38 144
MS.gene028654.t1 AT2G22970 31.861 317 185 11 73 378 18 314 7.26e-38 141
MS.gene028654.t1 AT5G23210 29.298 413 226 14 138 503 8 401 1.10e-37 143
MS.gene028654.t1 AT5G23210 29.126 412 226 14 139 503 8 400 6.27e-37 141
MS.gene028654.t1 AT3G02110 26.316 437 261 13 103 499 53 468 6.50e-37 142
MS.gene028654.t1 AT2G22990 24.460 417 262 13 103 499 39 422 8.81e-37 141
MS.gene028654.t1 AT2G35780 25.701 428 270 11 99 499 42 448 9.64e-37 141
MS.gene028654.t1 AT2G24010 27.273 440 255 17 103 499 46 463 1.07e-36 142
MS.gene028654.t1 AT2G05850 26.376 436 287 15 78 497 62 479 1.58e-36 141
MS.gene028654.t1 AT2G22980 31.013 316 182 11 73 375 18 310 2.89e-36 138
MS.gene028654.t1 AT2G24010 26.797 459 258 19 103 499 17 459 2.68e-33 132
MS.gene028654.t1 AT3G12220 33.010 206 131 4 102 301 42 246 2.18e-32 128
MS.gene028654.t1 AT1G73280 25.706 354 218 11 163 499 12 337 7.70e-32 125
MS.gene028654.t1 AT3G56540 42.553 141 78 3 101 239 93 232 1.33e-31 123
MS.gene028654.t1 AT5G36180 26.536 358 210 11 163 499 12 337 1.37e-31 125
MS.gene028654.t1 AT5G36180 26.536 358 210 11 163 499 12 337 1.37e-31 125
MS.gene028654.t1 AT5G23210 29.878 328 173 11 139 421 8 323 2.73e-31 124
MS.gene028654.t1 AT2G24010 34.101 217 121 7 103 299 17 231 5.02e-28 115
MS.gene028654.t1 AT1G73280 24.706 340 211 11 177 499 1 312 9.29e-28 113
MS.gene028654.t1 AT5G36180 26.269 335 195 10 163 476 12 315 1.50e-27 113
MS.gene028654.t1 AT2G22990 23.529 340 221 10 175 499 2 317 2.46e-27 112
MS.gene028654.t1 AT2G27920 26.698 427 246 17 114 492 45 452 7.15e-27 113
MS.gene028654.t1 AT2G22990 23.529 340 221 10 175 499 2 317 7.53e-27 111
MS.gene028654.t1 AT5G36180 27.586 319 178 10 163 460 12 298 1.83e-26 110
MS.gene028654.t1 AT1G73310 25.157 318 193 8 163 463 12 301 2.23e-25 107
MS.gene028654.t1 AT2G22980 24.522 314 199 10 175 476 2 289 1.82e-24 103
MS.gene028654.t1 AT2G27920 25.897 390 228 15 145 492 10 380 1.57e-20 94.0
MS.gene028654.t1 AT2G27920 25.143 350 209 13 184 492 48 385 2.21e-15 78.6

Find 114 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTCTCTGGTGTGTTTA+TGG 0.125077 2.1:-7940884 None:intergenic
ACAACATGGCATCATCTTTA+AGG 0.142828 2.1:+7940689 None:intergenic
TATGCCTTGTACTGAATTTC+CGG 0.228537 2.1:-7942898 None:intergenic
TCCCTTGTTTGGAATGAATA+TGG 0.250663 2.1:+7941736 MS.gene028654:CDS
CACAAGATTCTATAGCCTTT+TGG 0.276751 2.1:-7942996 None:intergenic
AGCTTTAGGTGTTGGGGACT+TGG 0.302455 2.1:+7943416 MS.gene028654:CDS
TTATCCTTGGAGAATTTAAA+AGG 0.303425 2.1:-7941706 None:intergenic
AGGATGACCCTGTTGTTATA+TGG 0.306709 2.1:+7941629 MS.gene028654:CDS
ATAAGAACTTGTCCCTTGTT+TGG 0.312379 2.1:+7941725 MS.gene028654:CDS
ATATCATACATTAATGTTGC+CGG 0.346161 2.1:-7943213 None:intergenic
CCTGTTGTTATATGGTTAAC+TGG 0.347839 2.1:+7941637 MS.gene028654:CDS
TCTTGAACATGAAGACAGTT+AGG 0.353758 2.1:+7943391 MS.gene028654:CDS
AGACAATGGACTAATTAATA+AGG 0.356998 2.1:+7942936 MS.gene028654:CDS
AACATCTGAAGTGCAGCTTT+TGG 0.363126 2.1:-7944269 None:intergenic
GTCTCCTACAACCCCGTATC+TGG 0.372478 2.1:+7943896 MS.gene028654:CDS
CACTTCAGATGTTAAAAGAT+TGG 0.373515 2.1:+7944279 MS.gene028654:CDS
TTAGGGAAGCTTTAGGTGTT+GGG 0.376792 2.1:+7943409 MS.gene028654:CDS
CGATCTATATGACTTCTTGC+AGG 0.377801 2.1:+7942400 MS.gene028654:CDS
CCATTGTCTAATGCAAAATC+TGG 0.382981 2.1:-7942922 None:intergenic
AAGACAGTTAGGGAAGCTTT+AGG 0.386288 2.1:+7943402 MS.gene028654:CDS
CCAGTTAACCATATAACAAC+AGG 0.402521 2.1:-7941637 None:intergenic
AGTATACAGTGCCATGTTGC+AGG 0.410064 2.1:+7943461 MS.gene028654:CDS
GAGGAGAATGTCATTGTTTG+TGG 0.420601 2.1:-7940785 None:intergenic
AAGGGACAAGTTCTTATCCT+TGG 0.432855 2.1:-7941719 None:intergenic
GTAGACCAACCCACTGGAAC+AGG 0.438401 2.1:+7942320 MS.gene028654:CDS
GTTAGGGAAGCTTTAGGTGT+TGG 0.441008 2.1:+7943408 MS.gene028654:CDS
GGCTGGTCACATGGTTCCTA+TGG 0.441603 2.1:+7944241 MS.gene028654:CDS
TTTGATTTGTTAGGCACTAA+AGG 0.444714 2.1:+7943125 MS.gene028654:intron
GGTGTGTTTATGGAATCTTT+TGG 0.445106 2.1:-7940874 None:intergenic
CTTTGAATCTCGAAACACTA+AGG 0.445707 2.1:+7941609 MS.gene028654:CDS
AAGAAGATCTCATATGCAAT+TGG 0.456279 2.1:+7943559 MS.gene028654:CDS
GAAAAGAAGTTCACTTTCCC+TGG 0.457022 2.1:+7940934 MS.gene028654:CDS
ATCAAGGTGCTTGTGTATGC+TGG 0.464364 2.1:+7943534 MS.gene028654:CDS
CTTCACTATCAACCAGATAC+GGG 0.465787 2.1:-7943908 None:intergenic
TACCTTGCAGCTTGGGAATG+AGG 0.467604 2.1:-7941018 None:intergenic
CAAGCAGAAAATCTCATAAG+AGG 0.468099 2.1:+7940838 MS.gene028654:CDS
GGTGCTTCTGTTGAAGAACT+TGG 0.468257 2.1:+7940970 MS.gene028654:CDS
TCATTGTTTGTGGGATAAGC+TGG 0.472247 2.1:-7940775 None:intergenic
TTCGTTTGGCAGGGAATTCG+AGG 0.474231 2.1:+7943829 MS.gene028654:intron
ATTCCTGCTCTTCTTGAGGA+TGG 0.475493 2.1:+7943510 MS.gene028654:CDS
TCAACCAGATACGGGGTTGT+AGG 0.477869 2.1:-7943900 None:intergenic
CGGACCTCTTGCTTTCCTCA+AGG 0.484984 2.1:+7943953 MS.gene028654:CDS
TGAAATATTCGATCAGATCA+TGG 0.486706 2.1:+7943184 MS.gene028654:CDS
ACAGTGCCATGTTGCAGGAT+TGG 0.491110 2.1:+7943466 MS.gene028654:CDS
TCTTCACTATCAACCAGATA+CGG 0.495278 2.1:-7943909 None:intergenic
CTTGAACATGAAGACAGTTA+GGG 0.500091 2.1:+7943392 MS.gene028654:CDS
AGGAATTCATATAAATCTAA+AGG 0.501724 2.1:+7942737 MS.gene028654:CDS
AGGATGATGCAGTTGAAGAG+AGG 0.504353 2.1:-7940804 None:intergenic
ACAAAATGAGGATCATTCTC+TGG 0.506628 2.1:-7940895 None:intergenic
CTTGTACTGAATTTCCGGAT+TGG 0.507308 2.1:-7942893 None:intergenic
CAAGGAAACAAGGCAAAAGA+AGG 0.507437 2.1:+7942717 MS.gene028654:CDS
GGGTATTCCTGCTCTTCTTG+AGG 0.508272 2.1:+7943506 MS.gene028654:CDS
GCAATTTCACTGCTGCATCC+TGG 0.508823 2.1:-7941664 None:intergenic
GGATGCAAGGGAAACTGATA+AGG 0.515489 2.1:+7944300 MS.gene028654:CDS
TGAACCCTAGATGCAAAAGC+TGG 0.524049 2.1:-7942693 None:intergenic
ATATGGTTAACTGGAGGGCC+AGG 0.526048 2.1:+7941646 MS.gene028654:CDS
ATTCCATCCTCAAGAAGAGC+AGG 0.526347 2.1:-7943513 None:intergenic
GTTGTTCCCACGATGCCAAA+AGG 0.528378 2.1:+7942981 MS.gene028654:CDS
TGGTAATGGATTAACCAATC+CGG 0.528504 2.1:+7942879 MS.gene028654:CDS
ATGTCCAGCGTATGATTCTC+CGG 0.529003 2.1:-7942664 None:intergenic
TCTTCTTGAGGATGGAATCA+AGG 0.531157 2.1:+7943518 MS.gene028654:CDS
GAAGAACTTGGTCATCATGC+AGG 0.536316 2.1:+7940982 MS.gene028654:CDS
GTTGATGCCATGACATGGTC+AGG 0.537146 2.1:+7943855 MS.gene028654:CDS
TAGGGAAGCTTTAGGTGTTG+GGG 0.537357 2.1:+7943410 MS.gene028654:CDS
TGAAACCTGTTCCAGTGGGT+TGG 0.537449 2.1:-7942325 None:intergenic
ATGTTAAAAGATTGGATGCA+AGG 0.542286 2.1:+7944287 MS.gene028654:CDS
AATCATTCTTAGTGAACTGA+GGG 0.546470 2.1:-7942632 None:intergenic
CAATCCGGAAATTCAGTACA+AGG 0.549343 2.1:+7942894 MS.gene028654:CDS
GCACCAGAGTCAACAAAACC+AGG 0.549754 2.1:-7940952 None:intergenic
TTGTTTGGAATGAATATGGA+TGG 0.552020 2.1:+7941740 MS.gene028654:CDS
AGGAGAATGTCATTGTTTGT+GGG 0.552520 2.1:-7940784 None:intergenic
CTGGTTGATAGTGAAGAAGC+AGG 0.565072 2.1:+7943915 MS.gene028654:CDS
GACATTAGAAAGCAATGTGT+GGG 0.565208 2.1:+7943333 MS.gene028654:CDS
GATCAGATCATGGACATAGC+CGG 0.566017 2.1:+7943194 MS.gene028654:CDS
TTGTTATATGGTTAACTGGA+GGG 0.566502 2.1:+7941641 MS.gene028654:CDS
TTTGCATCTAGGGTTCATCA+AGG 0.567295 2.1:+7942699 MS.gene028654:CDS
GATCTCATATGCAATTGGCT+TGG 0.569300 2.1:+7943564 MS.gene028654:CDS
TGTTAAAAGATTGGATGCAA+GGG 0.569319 2.1:+7944288 MS.gene028654:CDS
ATATTTCCATGAACAAAATG+AGG 0.569648 2.1:-7940907 None:intergenic
TTTGGCAGGGAATTCGAGGT+GGG 0.572491 2.1:+7943833 MS.gene028654:intron
GTTGTTATATGGTTAACTGG+AGG 0.581708 2.1:+7941640 MS.gene028654:CDS
GTTTGGCAGGGAATTCGAGG+TGG 0.583856 2.1:+7943832 MS.gene028654:intron
TGGGAACAACTTGTTGATGT+TGG 0.588848 2.1:-7942968 None:intergenic
GGTGAAAGAGGCTGGTCACA+TGG 0.589518 2.1:+7944232 MS.gene028654:intron
ATATTTGTAGACCAACCCAC+TGG 0.600249 2.1:+7942314 MS.gene028654:CDS
ATCCATATTCATTCCAAACA+AGG 0.604369 2.1:-7941738 None:intergenic
AGTATGAATGTGAAATGAAG+AGG 0.606510 2.1:-7940747 None:intergenic
TTCCTCATTCCCAAGCTGCA+AGG 0.607253 2.1:+7941016 MS.gene028654:CDS
TTGTTATGACTTCTCAAATG+CGG 0.609937 2.1:+7943362 MS.gene028654:CDS
TTTCATCCAATCCTGCAACA+TGG 0.613087 2.1:-7943472 None:intergenic
TGACATTAGAAAGCAATGTG+TGG 0.619542 2.1:+7943332 MS.gene028654:CDS
GATTTGTTAGGCACTAAAGG+TGG 0.621116 2.1:+7943128 MS.gene028654:intron
AAATCATTCTTAGTGAACTG+AGG 0.624376 2.1:-7942633 None:intergenic
CAAAAGGCTATAGAATCTTG+TGG 0.625610 2.1:+7942997 MS.gene028654:CDS
TAGCTGAAACCTGTTCCAGT+GGG 0.633323 2.1:-7942329 None:intergenic
ATAGCTGAAACCTGTTCCAG+TGG 0.637939 2.1:-7942330 None:intergenic
TCCATATTCATTCCAAACAA+GGG 0.638155 2.1:-7941737 None:intergenic
GCAGGAGTTCTGAAAAGCCA+CGG 0.638418 2.1:+7943933 MS.gene028654:CDS
TTCACTATCAACCAGATACG+GGG 0.643964 2.1:-7943907 None:intergenic
TCGAACGTCGCTATCATCAG+TGG 0.646032 2.1:-7942354 None:intergenic
TAGGGTTCATCAAGGAAACA+AGG 0.646926 2.1:+7942707 MS.gene028654:CDS
AAGGGAAACTGATAAGGACA+AGG 0.660416 2.1:+7944306 MS.gene028654:CDS
CACCAGAGTCAACAAAACCA+GGG 0.660712 2.1:-7940951 None:intergenic
AAACTGATAAGGACAAGGGG+AGG 0.667086 2.1:+7944311 MS.gene028654:CDS
AGGGAAACTGATAAGGACAA+GGG 0.667941 2.1:+7944307 MS.gene028654:CDS
GGTGGGTTGATGCCATGACA+TGG 0.669211 2.1:+7943850 MS.gene028654:CDS
TGAGGAAAGCAAGAGGTCCG+TGG 0.669417 2.1:-7943950 None:intergenic
TGTTTGGAATGAATATGGAT+GGG 0.672561 2.1:+7941741 MS.gene028654:CDS
GAATGAATATGGATGGGACA+TGG 0.683982 2.1:+7941747 MS.gene028654:CDS
ATTACCGGAGAATCATACGC+TGG 0.686475 2.1:+7942660 MS.gene028654:CDS
GGGAAACTGATAAGGACAAG+GGG 0.694048 2.1:+7944308 MS.gene028654:CDS
CAAACCTTGAGGAAAGCAAG+AGG 0.699262 2.1:-7943957 None:intergenic
GACGTTCGACATGATGAAGA+CGG 0.699400 2.1:+7942368 MS.gene028654:CDS
CAGTTAACCATATAACAACA+GGG 0.704037 2.1:-7941636 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAGAGAATAATTTAAT+AGG - chr2.1:7941775-7941794 None:intergenic 15.0%
!! AGCAAAGAATTTATAAAAAA+TGG + chr2.1:7941219-7941238 MS.gene028654:intron 15.0%
!! ATAAAATAGAATGAAATATG+AGG + chr2.1:7941082-7941101 MS.gene028654:intron 15.0%
!! TGTACATTATATTTATGTAA+AGG + chr2.1:7942781-7942800 MS.gene028654:intron 15.0%
!! TTATAAAAAATGGAATAGTT+TGG + chr2.1:7941229-7941248 MS.gene028654:intron 15.0%
!!! AAAGTGTTTTTCTTAAAATT+CGG - chr2.1:7941436-7941455 None:intergenic 15.0%
!!! AAGAATGATTTTTATATTAC+CGG + chr2.1:7942645-7942664 MS.gene028654:CDS 15.0%
!!! CATTCTATTTTATCTTATTT+TGG - chr2.1:7941075-7941094 None:intergenic 15.0%
!!! CTCTATTGATTTATATTAAT+TGG + chr2.1:7941496-7941515 MS.gene028654:intron 15.0%
!!! TTAGCTATTTTTACAATAAA+AGG - chr2.1:7942031-7942050 None:intergenic 15.0%
!!! TTTGATCTAGTTTAATTTAT+TGG + chr2.1:7941266-7941285 MS.gene028654:intron 15.0%
!! AAGGAAAAATAACAAGTAAA+TGG - chr2.1:7943085-7943104 None:intergenic 20.0%
!! AATTATTCACTTGTATTAAG+TGG + chr2.1:7942494-7942513 MS.gene028654:intron 20.0%
!! AGGAATTCATATAAATCTAA+AGG + chr2.1:7942737-7942756 MS.gene028654:CDS 20.0%
!! CAAAATAGAATACACAAATA+TGG + chr2.1:7943783-7943802 MS.gene028654:intron 20.0%
!! CAGAATAAAAATATAGTTCT+TGG + chr2.1:7941158-7941177 MS.gene028654:intron 20.0%
!! GATTATAAGTTTGACTAATT+TGG + chr2.1:7943742-7943761 MS.gene028654:intron 20.0%
!! GTAAACCTTTATAATAAACA+GGG + chr2.1:7942847-7942866 MS.gene028654:intron 20.0%
!! TCTTTCACCTATTAAAAAAA+CGG - chr2.1:7944221-7944240 None:intergenic 20.0%
!! TGTAAACCTTTATAATAAAC+AGG + chr2.1:7942846-7942865 MS.gene028654:intron 20.0%
!! TTTCATAAGCTATATTAGTT+TGG - chr2.1:7941991-7942010 None:intergenic 20.0%
!!! ATTGCTATGTTTTATGAAAA+TGG + chr2.1:7941682-7941701 MS.gene028654:CDS 20.0%
!!! TAGTTTGTATTTGATTTGTT+AGG + chr2.1:7943116-7943135 MS.gene028654:intron 20.0%
!!! TATTTTGACACAAGAAATTT+TGG - chr2.1:7943770-7943789 None:intergenic 20.0%
!!! TTAACTTCCGTTTTTTTAAT+AGG + chr2.1:7944211-7944230 MS.gene028654:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+TGG + chr2.1:7942096-7942115 MS.gene028654:intron 20.0%
!!! TTATAAATGTGATTTTCGTT+TGG + chr2.1:7943815-7943834 MS.gene028654:intron 20.0%
!!! TTGTCATCAAATTCTTATTT+TGG - chr2.1:7941476-7941495 None:intergenic 20.0%
! ACAAACAAGAAAAAATGCAT+TGG - chr2.1:7942280-7942299 None:intergenic 25.0%
! ACAAACTATTAGTGTCAATA+AGG - chr2.1:7943104-7943123 None:intergenic 25.0%
! ACAACTTATGTCATATTTGT+AGG + chr2.1:7941913-7941932 MS.gene028654:intron 25.0%
! ACATAAGCATTTATATGACA+AGG + chr2.1:7942052-7942071 MS.gene028654:intron 25.0%
! ATATCATACATTAATGTTGC+CGG - chr2.1:7943216-7943235 None:intergenic 25.0%
! ATATTTCCATGAACAAAATG+AGG - chr2.1:7940910-7940929 None:intergenic 25.0%
! CAAAACCCTGTTTATTATAA+AGG - chr2.1:7942855-7942874 None:intergenic 25.0%
! CATAAGCATTTATATGACAA+GGG + chr2.1:7942053-7942072 MS.gene028654:intron 25.0%
! TATATGAGTAAGAACTAAAG+TGG - chr2.1:7941808-7941827 None:intergenic 25.0%
! TTATCCTTGGAGAATTTAAA+AGG - chr2.1:7941709-7941728 None:intergenic 25.0%
!! AGATTTTCTGCTTGTAATTT+TGG - chr2.1:7940832-7940851 None:intergenic 25.0%
!! CATGACTATCTTTGAATTTT+AGG + chr2.1:7941049-7941068 MS.gene028654:intron 25.0%
!! GATTTTCTGCTTGTAATTTT+GGG - chr2.1:7940831-7940850 None:intergenic 25.0%
!! TCTTAAAATTCGGTCTATTT+TGG - chr2.1:7941426-7941445 None:intergenic 25.0%
!! TTTTGTTCATGGAAATATTG+TGG + chr2.1:7940912-7940931 MS.gene028654:CDS 25.0%
!!! AATATGAGGTAAGTTTTTTG+TGG + chr2.1:7941096-7941115 MS.gene028654:intron 25.0%
!!! AGACAATGGACTAATTAATA+AGG + chr2.1:7942936-7942955 MS.gene028654:CDS 25.0%
!!! AGACTGTTTGAGAATTTTTT+TGG + chr2.1:7941888-7941907 MS.gene028654:intron 25.0%
!!! ATGCATTTTTTCTTGTTTGT+AGG + chr2.1:7942280-7942299 MS.gene028654:intron 25.0%
!!! GTTTTTTTAATAGGTGAAAG+AGG + chr2.1:7944220-7944239 MS.gene028654:intron 25.0%
!!! TATTTGTAGGTTTTTTTGAG+AGG + chr2.1:7941926-7941945 MS.gene028654:intron 25.0%
!!! TTGGAGTTTAATTTTAGAAG+TGG - chr2.1:7941407-7941426 None:intergenic 25.0%
AAATCATTCTTAGTGAACTG+AGG - chr2.1:7942636-7942655 None:intergenic 30.0%
AAGAAGATCTCATATGCAAT+TGG + chr2.1:7943559-7943578 MS.gene028654:CDS 30.0%
AAGTAAATGGCACAACAAAT+TGG - chr2.1:7943072-7943091 None:intergenic 30.0%
AATCATTCTTAGTGAACTGA+GGG - chr2.1:7942635-7942654 None:intergenic 30.0%
AGTATGAATGTGAAATGAAG+AGG - chr2.1:7940750-7940769 None:intergenic 30.0%
ATCCATATTCATTCCAAACA+AGG - chr2.1:7941741-7941760 None:intergenic 30.0%
ATGTTAAAAGATTGGATGCA+AGG + chr2.1:7944287-7944306 MS.gene028654:CDS 30.0%
CACTTCAGATGTTAAAAGAT+TGG + chr2.1:7944279-7944298 MS.gene028654:CDS 30.0%
CAGTTAACCATATAACAACA+GGG - chr2.1:7941639-7941658 None:intergenic 30.0%
CGACATAACAAATTGTTCAA+TGG - chr2.1:7941567-7941586 None:intergenic 30.0%
GTCAGGTCAAAAAGAATTTA+AGG + chr2.1:7943872-7943891 MS.gene028654:CDS 30.0%
TAATCAATGTGCTTCACTTA+AGG - chr2.1:7943727-7943746 None:intergenic 30.0%
TCCATATTCATTCCAAACAA+GGG - chr2.1:7941740-7941759 None:intergenic 30.0%
TCTCTAAATTTCACAATGAC+AGG + chr2.1:7942593-7942612 MS.gene028654:intron 30.0%
TCTTGCAATAATGACATGTT+TGG + chr2.1:7941834-7941853 MS.gene028654:intron 30.0%
TGAAATATTCGATCAGATCA+TGG + chr2.1:7943184-7943203 MS.gene028654:CDS 30.0%
TGATGTTTACATGTCACTAT+CGG + chr2.1:7944132-7944151 MS.gene028654:intron 30.0%
TGGATGAAAAATCTAGAAGT+GGG + chr2.1:7943486-7943505 MS.gene028654:CDS 30.0%
TGTTAAAAGATTGGATGCAA+GGG + chr2.1:7944288-7944307 MS.gene028654:CDS 30.0%
TTGGATGAAAAATCTAGAAG+TGG + chr2.1:7943485-7943504 MS.gene028654:CDS 30.0%
TTGTTATATGGTTAACTGGA+GGG + chr2.1:7941641-7941660 MS.gene028654:CDS 30.0%
TTGTTATGACTTCTCAAATG+CGG + chr2.1:7943362-7943381 MS.gene028654:CDS 30.0%
! AATGATCCTCATTTTGTTCA+TGG + chr2.1:7940901-7940920 MS.gene028654:CDS 30.0%
! CTTCAAACTAAAAGTGTGTT+TGG + chr2.1:7944035-7944054 MS.gene028654:intron 30.0%
! TAAAAGACAGACACATTTTG+AGG - chr2.1:7940717-7940736 None:intergenic 30.0%
! TCTAATCAGAATTTGAAGTC+CGG + chr2.1:7943683-7943702 MS.gene028654:intron 30.0%
! TGTTTGGAATGAATATGGAT+GGG + chr2.1:7941741-7941760 MS.gene028654:CDS 30.0%
! TTGTTTGGAATGAATATGGA+TGG + chr2.1:7941740-7941759 MS.gene028654:CDS 30.0%
!! AATAAACAGGGTTTTGCTAT+TGG + chr2.1:7942859-7942878 MS.gene028654:intron 30.0%
!! TTTGATTTGTTAGGCACTAA+AGG + chr2.1:7943125-7943144 MS.gene028654:intron 30.0%
!!! TTTTAAGTTTGTTCCCTTCT+CGG + chr2.1:7943027-7943046 MS.gene028654:intron 30.0%
ACAAAATGAGGATCATTCTC+TGG - chr2.1:7940898-7940917 None:intergenic 35.0%
AGGAGAATGTCATTGTTTGT+GGG - chr2.1:7940787-7940806 None:intergenic 35.0%
AGTAATATGTGTTAGTCCTC+CGG + chr2.1:7943600-7943619 MS.gene028654:intron 35.0%
ATAAGAACTTGTCCCTTGTT+TGG + chr2.1:7941725-7941744 MS.gene028654:CDS 35.0%
ATCATTCTCTGGTGTGTTTA+TGG - chr2.1:7940887-7940906 None:intergenic 35.0%
ATCCTTAAACACAAACCTTG+AGG - chr2.1:7943971-7943990 None:intergenic 35.0%
CAAAAGGCTATAGAATCTTG+TGG + chr2.1:7942997-7943016 MS.gene028654:CDS 35.0%
CAAGCAGAAAATCTCATAAG+AGG + chr2.1:7940838-7940857 MS.gene028654:CDS 35.0%
CCAGTTAACCATATAACAAC+AGG - chr2.1:7941640-7941659 None:intergenic 35.0%
CCATTGTCTAATGCAAAATC+TGG - chr2.1:7942925-7942944 None:intergenic 35.0%
CCTGTTGTTATATGGTTAAC+TGG + chr2.1:7941637-7941656 MS.gene028654:CDS 35.0%
CTTGAACATGAAGACAGTTA+GGG + chr2.1:7943392-7943411 MS.gene028654:CDS 35.0%
CTTTGAATCTCGAAACACTA+AGG + chr2.1:7941609-7941628 MS.gene028654:CDS 35.0%
GACATTAGAAAGCAATGTGT+GGG + chr2.1:7943333-7943352 MS.gene028654:CDS 35.0%
GACGAATTATTTAAGAGAGC+CGG - chr2.1:7943705-7943724 None:intergenic 35.0%
GTTGTTATATGGTTAACTGG+AGG + chr2.1:7941640-7941659 MS.gene028654:CDS 35.0%
TATGCCTTGTACTGAATTTC+CGG - chr2.1:7942901-7942920 None:intergenic 35.0%
TCTTCACTATCAACCAGATA+CGG - chr2.1:7943912-7943931 None:intergenic 35.0%
TCTTGAACATGAAGACAGTT+AGG + chr2.1:7943391-7943410 MS.gene028654:CDS 35.0%
TGACATTAGAAAGCAATGTG+TGG + chr2.1:7943332-7943351 MS.gene028654:CDS 35.0%
TGATTGAACATAGCACAACA+GGG - chr2.1:7942141-7942160 None:intergenic 35.0%
TTCCTCAAGGTTTGTGTTTA+AGG + chr2.1:7943966-7943985 MS.gene028654:intron 35.0%
TTGATTGAACATAGCACAAC+AGG - chr2.1:7942142-7942161 None:intergenic 35.0%
TTTCAGTTTATGACCGAGAA+GGG - chr2.1:7943043-7943062 None:intergenic 35.0%
! AAATGTGATTTTCGTTTGGC+AGG + chr2.1:7943819-7943838 MS.gene028654:intron 35.0%
! AATGTGATTTTCGTTTGGCA+GGG + chr2.1:7943820-7943839 MS.gene028654:intron 35.0%
! ACAATGACAGGCATTTTTCA+AGG + chr2.1:7942605-7942624 MS.gene028654:intron 35.0%
! ATCTATTTTACCTTGCAGCT+TGG - chr2.1:7941029-7941048 None:intergenic 35.0%
! CACAAGATTCTATAGCCTTT+TGG - chr2.1:7942999-7943018 None:intergenic 35.0%
! CCAGATTTTGCATTAGACAA+TGG + chr2.1:7942922-7942941 MS.gene028654:CDS 35.0%
! CTTGATTGTTTGAGTTTGTG+TGG - chr2.1:7942218-7942237 None:intergenic 35.0%
! GGTGTGTTTATGGAATCTTT+TGG - chr2.1:7940877-7940896 None:intergenic 35.0%
! TCCCTTGTTTGGAATGAATA+TGG + chr2.1:7941736-7941755 MS.gene028654:CDS 35.0%
! TCTATTTTACCTTGCAGCTT+GGG - chr2.1:7941028-7941047 None:intergenic 35.0%
! TGGTCCTTTTAAATTCTCCA+AGG + chr2.1:7941702-7941721 MS.gene028654:CDS 35.0%
! TTTTAATAGGTGAAAGAGGC+TGG + chr2.1:7944224-7944243 MS.gene028654:intron 35.0%
! TTTTCAGTTTATGACCGAGA+AGG - chr2.1:7943044-7943063 None:intergenic 35.0%
!! CAATTTGTTATGTCGATTGC+AGG + chr2.1:7941572-7941591 MS.gene028654:intron 35.0%
!! TGGTAATGGATTAACCAATC+CGG + chr2.1:7942879-7942898 MS.gene028654:CDS 35.0%
!! TTCTGCTTGTAATTTTGGGT+AGG - chr2.1:7940827-7940846 None:intergenic 35.0%
AAGACAGTTAGGGAAGCTTT+AGG + chr2.1:7943402-7943421 MS.gene028654:CDS 40.0%
AAGGGAAACTGATAAGGACA+AGG + chr2.1:7944306-7944325 MS.gene028654:CDS 40.0%
AAGGGACAAGTTCTTATCCT+TGG - chr2.1:7941722-7941741 None:intergenic 40.0%
AGCACAACAGGGAAAATCTA+GGG - chr2.1:7942130-7942149 None:intergenic 40.0%
AGGATGACCCTGTTGTTATA+TGG + chr2.1:7941629-7941648 MS.gene028654:CDS 40.0%
AGGGAAACTGATAAGGACAA+GGG + chr2.1:7944307-7944326 MS.gene028654:CDS 40.0%
ATATTTGTAGACCAACCCAC+TGG + chr2.1:7942314-7942333 MS.gene028654:CDS 40.0%
CAAGGAAACAAGGCAAAAGA+AGG + chr2.1:7942717-7942736 MS.gene028654:CDS 40.0%
CAATCCGGAAATTCAGTACA+AGG + chr2.1:7942894-7942913 MS.gene028654:CDS 40.0%
CGATCTATATGACTTCTTGC+AGG + chr2.1:7942400-7942419 MS.gene028654:CDS 40.0%
CTTCACTATCAACCAGATAC+GGG - chr2.1:7943911-7943930 None:intergenic 40.0%
CTTGTACTGAATTTCCGGAT+TGG - chr2.1:7942896-7942915 None:intergenic 40.0%
GAAAAGAAGTTCACTTTCCC+TGG + chr2.1:7940934-7940953 MS.gene028654:CDS 40.0%
GAATGAATATGGATGGGACA+TGG + chr2.1:7941747-7941766 MS.gene028654:CDS 40.0%
GAGGAGAATGTCATTGTTTG+TGG - chr2.1:7940788-7940807 None:intergenic 40.0%
GATCTCATATGCAATTGGCT+TGG + chr2.1:7943564-7943583 MS.gene028654:CDS 40.0%
TAGCACAACAGGGAAAATCT+AGG - chr2.1:7942131-7942150 None:intergenic 40.0%
TAGGGTTCATCAAGGAAACA+AGG + chr2.1:7942707-7942726 MS.gene028654:CDS 40.0%
TCATTGTTTGTGGGATAAGC+TGG - chr2.1:7940778-7940797 None:intergenic 40.0%
TCTTCTTGAGGATGGAATCA+AGG + chr2.1:7943518-7943537 MS.gene028654:CDS 40.0%
TTCACTATCAACCAGATACG+GGG - chr2.1:7943910-7943929 None:intergenic 40.0%
TTTCATCCAATCCTGCAACA+TGG - chr2.1:7943475-7943494 None:intergenic 40.0%
! ACATTCCAGCTTTTGCATCT+AGG + chr2.1:7942688-7942707 MS.gene028654:CDS 40.0%
! CATTCCAGCTTTTGCATCTA+GGG + chr2.1:7942689-7942708 MS.gene028654:CDS 40.0%
! TTGTTTGAGTTTGTGTGGAC+TGG - chr2.1:7942213-7942232 None:intergenic 40.0%
! TTTGCATCTAGGGTTCATCA+AGG + chr2.1:7942699-7942718 MS.gene028654:CDS 40.0%
! TTTTTGACCTGACCATGTCA+TGG - chr2.1:7943865-7943884 None:intergenic 40.0%
!! AACATCTGAAGTGCAGCTTT+TGG - chr2.1:7944272-7944291 None:intergenic 40.0%
!! GATTTGTTAGGCACTAAAGG+TGG + chr2.1:7943128-7943147 MS.gene028654:intron 40.0%
!! TGGGAACAACTTGTTGATGT+TGG - chr2.1:7942971-7942990 None:intergenic 40.0%
!! TTAGGGAAGCTTTAGGTGTT+GGG + chr2.1:7943409-7943428 MS.gene028654:CDS 40.0%
!!! CAGGGTTTTGCTATTGGTAA+TGG + chr2.1:7942865-7942884 MS.gene028654:intron 40.0%
AAACTGATAAGGACAAGGGG+AGG + chr2.1:7944311-7944330 MS.gene028654:CDS 45.0%
AGGATGATGCAGTTGAAGAG+AGG - chr2.1:7940807-7940826 None:intergenic 45.0%
AGGGAAAATCTAGGGGGTTT+AGG - chr2.1:7942122-7942141 None:intergenic 45.0%
AGTATACAGTGCCATGTTGC+AGG + chr2.1:7943461-7943480 MS.gene028654:CDS 45.0%
ATAGCTGAAACCTGTTCCAG+TGG - chr2.1:7942333-7942352 None:intergenic 45.0%
ATGTCCAGCGTATGATTCTC+CGG - chr2.1:7942667-7942686 None:intergenic 45.0%
ATTACCGGAGAATCATACGC+TGG + chr2.1:7942660-7942679 MS.gene028654:CDS 45.0%
ATTCCATCCTCAAGAAGAGC+AGG - chr2.1:7943516-7943535 None:intergenic 45.0%
ATTCCTGCTCTTCTTGAGGA+TGG + chr2.1:7943510-7943529 MS.gene028654:CDS 45.0%
CAAACCTTGAGGAAAGCAAG+AGG - chr2.1:7943960-7943979 None:intergenic 45.0%
CACAACAGGGAAAATCTAGG+GGG - chr2.1:7942128-7942147 None:intergenic 45.0%
CACCAGAGTCAACAAAACCA+GGG - chr2.1:7940954-7940973 None:intergenic 45.0%
GAAGAACTTGGTCATCATGC+AGG + chr2.1:7940982-7941001 MS.gene028654:CDS 45.0%
GACGTTCGACATGATGAAGA+CGG + chr2.1:7942368-7942387 MS.gene028654:CDS 45.0%
GATCAGATCATGGACATAGC+CGG + chr2.1:7943194-7943213 MS.gene028654:CDS 45.0%
GCACAACAGGGAAAATCTAG+GGG - chr2.1:7942129-7942148 None:intergenic 45.0%
GGATGCAAGGGAAACTGATA+AGG + chr2.1:7944300-7944319 MS.gene028654:CDS 45.0%
GGGAAACTGATAAGGACAAG+GGG + chr2.1:7944308-7944327 MS.gene028654:CDS 45.0%
GGTGCTTCTGTTGAAGAACT+TGG + chr2.1:7940970-7940989 MS.gene028654:CDS 45.0%
TAGCTGAAACCTGTTCCAGT+GGG - chr2.1:7942332-7942351 None:intergenic 45.0%
TAGGGGGTTTAGGCCATATT+TGG - chr2.1:7942112-7942131 None:intergenic 45.0%
TGAACCCTAGATGCAAAAGC+TGG - chr2.1:7942696-7942715 None:intergenic 45.0%
! ATCAAGGTGCTTGTGTATGC+TGG + chr2.1:7943534-7943553 MS.gene028654:CDS 45.0%
! CTATAGCCTTTTGGCATCGT+GGG - chr2.1:7942990-7943009 None:intergenic 45.0%
! TCTATAGCCTTTTGGCATCG+TGG - chr2.1:7942991-7943010 None:intergenic 45.0%
!! CTGGTTGATAGTGAAGAAGC+AGG + chr2.1:7943915-7943934 MS.gene028654:CDS 45.0%
!! GCAGCTTTTGGTTGATCCAT+AGG - chr2.1:7944260-7944279 None:intergenic 45.0%
!! GTTAGGGAAGCTTTAGGTGT+TGG + chr2.1:7943408-7943427 MS.gene028654:CDS 45.0%
!! TAGGGAAGCTTTAGGTGTTG+GGG + chr2.1:7943410-7943429 MS.gene028654:CDS 45.0%
!! TCACTATCGGTGTTGTGTCT+GGG + chr2.1:7944145-7944164 MS.gene028654:intron 45.0%
!!! TTCCCTGGTTTTGTTGACTC+TGG + chr2.1:7940949-7940968 MS.gene028654:CDS 45.0%
ACAGTGCCATGTTGCAGGAT+TGG + chr2.1:7943466-7943485 MS.gene028654:CDS 50.0%
ATATGGTTAACTGGAGGGCC+AGG + chr2.1:7941646-7941665 MS.gene028654:CDS 50.0%
CTTACTTTCCAGCCAAACGC+TGG - chr2.1:7943646-7943665 None:intergenic 50.0%
GCAATTTCACTGCTGCATCC+TGG - chr2.1:7941667-7941686 None:intergenic 50.0%
GCACCAGAGTCAACAAAACC+AGG - chr2.1:7940955-7940974 None:intergenic 50.0%
GGGTATTCCTGCTCTTCTTG+AGG + chr2.1:7943506-7943525 MS.gene028654:CDS 50.0%
GTTGATGCCATGACATGGTC+AGG + chr2.1:7943855-7943874 MS.gene028654:CDS 50.0%
GTTGTTCCCACGATGCCAAA+AGG + chr2.1:7942981-7943000 MS.gene028654:CDS 50.0%
TACCTTGCAGCTTGGGAATG+AGG - chr2.1:7941021-7941040 None:intergenic 50.0%
TCAACCAGATACGGGGTTGT+AGG - chr2.1:7943903-7943922 None:intergenic 50.0%
TCGAACGTCGCTATCATCAG+TGG - chr2.1:7942357-7942376 None:intergenic 50.0%
TGAAACCTGTTCCAGTGGGT+TGG - chr2.1:7942328-7942347 None:intergenic 50.0%
TGTTAGTCCTCCGGTTTCCA+AGG + chr2.1:7943609-7943628 MS.gene028654:intron 50.0%
TTACCCGGTTCCTTGGAAAC+CGG - chr2.1:7943622-7943641 None:intergenic 50.0%
TTCCTCATTCCCAAGCTGCA+AGG + chr2.1:7941016-7941035 MS.gene028654:CDS 50.0%
TTCGTTTGGCAGGGAATTCG+AGG + chr2.1:7943829-7943848 MS.gene028654:intron 50.0%
TTTGGCAGGGAATTCGAGGT+GGG + chr2.1:7943833-7943852 MS.gene028654:intron 50.0%
! TGTCTGGGACAAGTGTCTGT+CGG + chr2.1:7944160-7944179 MS.gene028654:intron 50.0%
!! AGCTTTAGGTGTTGGGGACT+TGG + chr2.1:7943416-7943435 MS.gene028654:CDS 50.0%
!! GCAGGAGTTCTGAAAAGCCA+CGG + chr2.1:7943933-7943952 MS.gene028654:CDS 50.0%
!! GTCACTATCGGTGTTGTGTC+TGG + chr2.1:7944144-7944163 MS.gene028654:intron 50.0%
CAGCCAAACGCTGGATTACC+CGG - chr2.1:7943637-7943656 None:intergenic 55.0%
CGGACCTCTTGCTTTCCTCA+AGG + chr2.1:7943953-7943972 MS.gene028654:CDS 55.0%
GAACCGGGTAATCCAGCGTT+TGG + chr2.1:7943631-7943650 MS.gene028654:intron 55.0%
GTAGACCAACCCACTGGAAC+AGG + chr2.1:7942320-7942339 MS.gene028654:CDS 55.0%
GTCTCCTACAACCCCGTATC+TGG + chr2.1:7943896-7943915 MS.gene028654:CDS 55.0%
GTTTGGCAGGGAATTCGAGG+TGG + chr2.1:7943832-7943851 MS.gene028654:intron 55.0%
TCCTCCGGTTTCCAAGGAAC+CGG + chr2.1:7943615-7943634 MS.gene028654:intron 55.0%
TGAGGAAAGCAAGAGGTCCG+TGG - chr2.1:7943953-7943972 None:intergenic 55.0%
! GGCTGGTCACATGGTTCCTA+TGG + chr2.1:7944241-7944260 MS.gene028654:CDS 55.0%
! GGTGAAAGAGGCTGGTCACA+TGG + chr2.1:7944232-7944251 MS.gene028654:intron 55.0%
!! GGTGGGTTGATGCCATGACA+TGG + chr2.1:7943850-7943869 MS.gene028654:CDS 55.0%
CCTCCGGTTTCCAAGGAACC+GGG + chr2.1:7943616-7943635 MS.gene028654:intron 60.0%
CGCTGGATTACCCGGTTCCT+TGG - chr2.1:7943629-7943648 None:intergenic 60.0%
CGGGTAATCCAGCGTTTGGC+TGG + chr2.1:7943635-7943654 MS.gene028654:intron 60.0%
CCCGGTTCCTTGGAAACCGG+AGG - chr2.1:7943619-7943638 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 7940694 7944355 7940694 ID=MS.gene028654
chr2.1 mRNA 7940694 7944355 7940694 ID=MS.gene028654.t1;Parent=MS.gene028654
chr2.1 exon 7940694 7941037 7940694 ID=MS.gene028654.t1.exon1;Parent=MS.gene028654.t1
chr2.1 CDS 7940694 7941037 7940694 ID=cds.MS.gene028654.t1;Parent=MS.gene028654.t1
chr2.1 exon 7941594 7941768 7941594 ID=MS.gene028654.t1.exon2;Parent=MS.gene028654.t1
chr2.1 CDS 7941594 7941768 7941594 ID=cds.MS.gene028654.t1;Parent=MS.gene028654.t1
chr2.1 exon 7942302 7942421 7942302 ID=MS.gene028654.t1.exon3;Parent=MS.gene028654.t1
chr2.1 CDS 7942302 7942421 7942302 ID=cds.MS.gene028654.t1;Parent=MS.gene028654.t1
chr2.1 exon 7942615 7942758 7942615 ID=MS.gene028654.t1.exon4;Parent=MS.gene028654.t1
chr2.1 CDS 7942615 7942758 7942615 ID=cds.MS.gene028654.t1;Parent=MS.gene028654.t1
chr2.1 exon 7942868 7943018 7942868 ID=MS.gene028654.t1.exon5;Parent=MS.gene028654.t1
chr2.1 CDS 7942868 7943018 7942868 ID=cds.MS.gene028654.t1;Parent=MS.gene028654.t1
chr2.1 exon 7943138 7943226 7943138 ID=MS.gene028654.t1.exon6;Parent=MS.gene028654.t1
chr2.1 CDS 7943138 7943226 7943138 ID=cds.MS.gene028654.t1;Parent=MS.gene028654.t1
chr2.1 exon 7943327 7943585 7943327 ID=MS.gene028654.t1.exon7;Parent=MS.gene028654.t1
chr2.1 CDS 7943327 7943585 7943327 ID=cds.MS.gene028654.t1;Parent=MS.gene028654.t1
chr2.1 exon 7943841 7943974 7943841 ID=MS.gene028654.t1.exon8;Parent=MS.gene028654.t1
chr2.1 CDS 7943841 7943974 7943841 ID=cds.MS.gene028654.t1;Parent=MS.gene028654.t1
chr2.1 exon 7944233 7944355 7944233 ID=MS.gene028654.t1.exon9;Parent=MS.gene028654.t1
chr2.1 CDS 7944233 7944355 7944233 ID=cds.MS.gene028654.t1;Parent=MS.gene028654.t1
Gene Sequence

>MS.gene028654

ATGGCATCATCTTTAAGGTTCCTCAAAATGTGTCTGTCTTTTATAATGTTCTTCCTCTTCATTTCACATTCATACTCATCTCCAGCTTATCCCACAAACAATGACATTCTCCTCTCTTCAACTGCATCATCCTACCCAAAATTACAAGCAGAAAATCTCATAAGAGGACTTAATCTTTTTCCAAAAGATTCCATAAACACACCAGAGAATGATCCTCATTTTGTTCATGGAAATATTGTGGAAAAGAAGTTCACTTTCCCTGGTTTTGTTGACTCTGGTGCTTCTGTTGAAGAACTTGGTCATCATGCAGGCTATTATAGTCTTCCTCATTCCCAAGCTGCAAGGTAAAATAGATCATGACTATCTTTGAATTTTAGGCCAAAATAAGATAAAATAGAATGAAATATGAGGTAAGTTTTTTGTGGTAAAAAATGATCTAAGCATAAAGTAAGAAAAGCTTTAGACAGAATAAAAATATAGTTCTTGGAAAGCATAAAGTCAGAATAATAAAAGTGAAAGTGAACAAGCAAAGAATTTATAAAAAATGGAATAGTTTGGATTTCTTATGTTCATTTGATCTAGTTTAATTTATTGGATATTTGTTTGATCATGTATTTTTATCATGTCTTTGATGTTGTCATTACTCGTGTATCAACTTAATCAAAATATATATCAAAGTATCATAATTTGAAATATCTGTTACAACATCTCCACTTCTAAAATTAAACTCCAAAATAGACCGAATTTTAAGAAAAACACTTTTTCAAATTATTACTTAACCAAAATAAGAATTTGATGACAACTCTATTGATTTATATTAATTGGTTTTTTGTCAACTCACATCATAATAATGTGTGCGAAGACATGTTTCCATTGAACAATTTGTTATGTCGATTGCAGGATGTTCTATTTTTTCTTTGAATCTCGAAACACTAAGGATGACCCTGTTGTTATATGGTTAACTGGAGGGCCAGGATGCAGCAGTGAAATTGCTATGTTTTATGAAAATGGTCCTTTTAAATTCTCCAAGGATAAGAACTTGTCCCTTGTTTGGAATGAATATGGATGGGACATGGTACCTATTAAATTATTCTCTTTTCTTTTTCTTTTTCCACTTTAGTTCTTACTCATATATGATCATCTTGCAATAATGACATGTTTGGATTGACTTATTTGCGCACATAAACAATTGTGAGACTGTTTGAGAATTTTTTTGGAAACAACTTATGTCATATTTGTAGGTTTTTTTGAGAGGTCATATCTATAAGTTGTTTTCAGTTTATTTTCATAAGCTCCAAACTAATATAGCTTATGAAACTGTTTGACTTTATTTACCTTTTATTGTAAAAATAGCTAATACATAAGCATTTATATGACAAGGGCTTATGATATAAGTGCTTAATTAAGTTGTTTATCCAAATATGGCCTAAACCCCCTAGATTTTCCCTGTTGTGCTATGTTCAATCAATGTAGAGTGTCAACAACAATAGCAAAAGTAATGATATCTATGCATATACCAGTCCACACAAACTCAAACAATCAAGTTATTATTTATTAGCACTGAAGTTGTTTTTTTAATAGTGCCAATGCATTTTTTCTTGTTTGTAGGCATCAAATATTATATTTGTAGACCAACCCACTGGAACAGGTTTCAGCTATACCACTGATGATAGCGACGTTCGACATGATGAAGACGGTGTTAGCAACGATCTATATGACTTCTTGCAGGTTATTTGATTTATTCAGTGATTAAAGAAAATAATATCAAAATAACATTTGAAATGATTGCTTTATTTATTGAATTATTCACTTGTATTAAGTGGTTAAACATGATTCACATTACAATCAATCTAAATTGCAAATTCTATGTTAAACTCTAATGTTGTGCATACATAAGATTCTCTAAATTTCACAATGACAGGCATTTTTCAAGGAACACCCTCAGTTCACTAAGAATGATTTTTATATTACCGGAGAATCATACGCTGGACATTACATTCCAGCTTTTGCATCTAGGGTTCATCAAGGAAACAAGGCAAAAGAAGGAATTCATATAAATCTAAAGGTATTATTACATTGTCATATAATGTACATTATATTTATGTAAAGGTAAACTTTTCTCAAAACAATATCAATGTAATGTAAACTAATTTGTAAACCTTTATAATAAACAGGGTTTTGCTATTGGTAATGGATTAACCAATCCGGAAATTCAGTACAAGGCATATCCAGATTTTGCATTAGACAATGGACTAATTAATAAGGATGAACATGCCAACATCAACAAGTTGTTCCCACGATGCCAAAAGGCTATAGAATCTTGTGGTATGACATTTTAAGTTTGTTCCCTTCTCGGTCATAAACTGAAAATTTTACCAATTTGTTGTGCCATTTACTTGTTATTTTTCCTTATTGACACTAATAGTTTGTATTTGATTTGTTAGGCACTAAAGGTGGAGACGCATGCATGACTTCAAGAAACATTTGCAGTGAAATATTCGATCAGATCATGGACATAGCCGGCAACATTAATGTATGATATCAAAACAGAAAAACTAAAAGTATTTGACAAAGATAGTATGAAAATAATGCTGTTTGAGTTCACTAATGCATTATGTTTATTCTTACTGCAGTACTATGACATTAGAAAGCAATGTGTGGGAAGTCTTTGTTATGACTTCTCAAATGCGGAAACATTCTTGAACATGAAGACAGTTAGGGAAGCTTTAGGTGTTGGGGACTTGGAATTTGTTTCTTGCAGTAGCACAGTATACAGTGCCATGTTGCAGGATTGGATGAAAAATCTAGAAGTGGGTATTCCTGCTCTTCTTGAGGATGGAATCAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAATTGGCTTGGTAAGCTCAATTACAGTAATATGTGTTAGTCCTCCGGTTTCCAAGGAACCGGGTAATCCAGCGTTTGGCTGGAAAGTAAGTAAAGTTCTGCAATAGATCTAATCAGAATTTGAAGTCCGGCTCTCTTAAATAATTCGTCCTTAAGTGAAGCACATTGATTATAAGTTTGACTAATTTGGAACCAAAATTTCTTGTGTCAAAATAGAATACACAAATATGGTAGTTAGATTTATAAATGTGATTTTCGTTTGGCAGGGAATTCGAGGTGGGTTGATGCCATGACATGGTCAGGTCAAAAAGAATTTAAGGCGTCTCCTACAACCCCGTATCTGGTTGATAGTGAAGAAGCAGGAGTTCTGAAAAGCCACGGACCTCTTGCTTTCCTCAAGGTTTGTGTTTAAGGATGTATTCATTAGCGTATTAGACGATTGATCTATATAGCACTGACACTTCAAACTAAAAGTGTGTTTGGTTTTCGACACATGTCGTGTTCGACATCGAGACAAGTATTTGCATTCGATCATTTTTATTTTCTCAAATTATTACTGATGTTTACATGTCACTATCGGTGTTGTGTCTGGGACAAGTGTCTGTCGGTGCTTTGTAGCTATTGATACGCGTGTGTTTAACTTCCGTTTTTTTAATAGGTGAAAGAGGCTGGTCACATGGTTCCTATGGATCAACCAAAAGCTGCACTTCAGATGTTAAAAGATTGGATGCAAGGGAAACTGATAAGGACAAGGGGAGGAGATAATGTCTCGTCTATATGA
Protein sequence

>MS.gene028654.t1

MASSLRFLKMCLSFIMFFLFISHSYSSPAYPTNNDILLSSTASSYPKLQAENLIRGLNLFPKDSINTPENDPHFVHGNIVEKKFTFPGFVDSGASVEELGHHAGYYSLPHSQAARMFYFFFESRNTKDDPVVIWLTGGPGCSSEIAMFYENGPFKFSKDKNLSLVWNEYGWDMASNIIFVDQPTGTGFSYTTDDSDVRHDEDGVSNDLYDFLQAFFKEHPQFTKNDFYITGESYAGHYIPAFASRVHQGNKAKEGIHINLKGFAIGNGLTNPEIQYKAYPDFALDNGLINKDEHANINKLFPRCQKAIESCGTKGGDACMTSRNICSEIFDQIMDIAGNINYYDIRKQCVGSLCYDFSNAETFLNMKTVREALGVGDLEFVSCSSTVYSAMLQDWMKNLEVGIPALLEDGIKVLVYAGEEDLICNWLGNSRWVDAMTWSGQKEFKASPTTPYLVDSEEAGVLKSHGPLAFLKVKEAGHMVPMDQPKAALQMLKDWMQGKLIRTRGGDNVSSI