AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38224

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38224.t1 MTR_5g097180 95.154 454 21 1 3 455 2 455 0.0 887
MS.gene38224.t1 MTR_4g084710 81.818 451 79 2 7 454 5 455 0.0 743
MS.gene38224.t1 MTR_4g057585 32.512 406 257 7 38 433 92 490 7.33e-71 233
MS.gene38224.t1 MTR_4g057595 32.020 406 259 7 38 433 93 491 2.30e-69 229
MS.gene38224.t1 MTR_1g094155 31.340 418 268 6 26 432 74 483 4.89e-69 228
MS.gene38224.t1 MTR_4g057600 33.333 420 255 8 31 436 84 492 4.89e-68 225
MS.gene38224.t1 MTR_2g095750 32.847 411 256 8 38 436 96 498 4.37e-67 223
MS.gene38224.t1 MTR_2g095730 32.619 420 260 9 32 436 84 495 5.33e-66 220
MS.gene38224.t1 MTR_1g050545 31.931 404 249 7 44 432 85 477 3.51e-63 213
MS.gene38224.t1 MTR_4g057570 31.415 417 263 7 32 433 79 487 1.42e-62 211
MS.gene38224.t1 MTR_1g021010 31.785 409 242 11 44 434 92 481 8.92e-54 187
MS.gene38224.t1 MTR_1g020090 31.127 408 243 10 44 434 106 492 3.62e-53 186
MS.gene38224.t1 MTR_1g021020 30.296 406 251 11 44 434 94 482 1.61e-50 179
MS.gene38224.t1 MTR_3g079560 31.731 416 246 12 44 442 94 488 2.35e-50 178
MS.gene38224.t1 MTR_2g095710 31.068 412 251 11 38 436 90 481 5.45e-50 177
MS.gene38224.t1 MTR_3g079590 31.540 409 243 12 44 433 94 484 6.37e-50 177
MS.gene38224.t1 MTR_3g079570 31.884 414 234 15 44 433 95 484 7.89e-48 171
MS.gene38224.t1 MTR_0003s0560 30.216 417 238 14 45 433 90 481 2.15e-44 162
MS.gene38224.t1 MTR_3g034290 30.198 404 249 14 45 429 91 480 3.60e-44 162
MS.gene38224.t1 MTR_3g079620 30.404 421 253 14 44 442 94 496 6.59e-44 161
MS.gene38224.t1 MTR_3g079600 30.496 423 257 14 44 446 92 497 1.01e-43 160
MS.gene38224.t1 MTR_1g095540 28.846 416 266 11 44 438 49 455 3.05e-43 158
MS.gene38224.t1 MTR_3g079630 29.197 411 258 11 44 433 94 492 7.68e-43 158
MS.gene38224.t1 MTR_1g095560 28.266 421 262 13 44 438 49 455 1.42e-39 148
MS.gene38224.t1 MTR_4g075150 28.404 426 259 13 44 438 50 460 1.96e-39 148
MS.gene38224.t1 MTR_4g075150 28.472 432 253 15 44 438 50 462 6.84e-39 146
MS.gene38224.t1 MTR_2g062980 27.273 407 251 13 44 422 56 445 6.81e-38 144
MS.gene38224.t1 MTR_2g081620 26.128 421 260 12 44 433 57 457 1.46e-37 143
MS.gene38224.t1 MTR_4g056520 27.206 408 244 10 62 429 55 449 2.00e-37 142
MS.gene38224.t1 MTR_3g090130 26.905 420 274 12 44 438 44 455 6.95e-37 141
MS.gene38224.t1 MTR_4g122950 25.290 431 267 13 44 433 55 471 1.12e-36 140
MS.gene38224.t1 MTR_4g122960 25.935 428 266 12 44 433 55 469 1.55e-36 140
MS.gene38224.t1 MTR_2g062990 26.601 406 255 14 44 422 56 445 1.62e-36 140
MS.gene38224.t1 MTR_3g090150 27.570 428 263 14 44 438 49 462 1.38e-35 137
MS.gene38224.t1 MTR_2g449850 27.543 403 253 14 46 422 56 445 3.40e-35 136
MS.gene38224.t1 MTR_3g498755 27.316 421 263 14 44 433 31 439 4.23e-35 135
MS.gene38224.t1 MTR_1g040370 27.612 402 251 13 44 438 46 414 7.02e-35 134
MS.gene38224.t1 MTR_8g011350 25.714 455 250 16 40 422 41 479 7.08e-35 136
MS.gene38224.t1 MTR_7g021130 26.984 441 282 11 24 433 20 451 8.34e-35 135
MS.gene38224.t1 MTR_3g034290 30.183 328 202 12 45 354 91 409 8.48e-35 134
MS.gene38224.t1 MTR_7g013790 27.674 430 259 16 44 438 51 463 1.06e-34 135
MS.gene38224.t1 MTR_2g018630 26.056 426 273 11 43 438 52 465 1.07e-34 135
MS.gene38224.t1 MTR_5g072570 25.943 424 267 11 44 433 45 455 1.46e-34 134
MS.gene38224.t1 MTR_2g063000 26.214 412 251 14 44 422 55 446 1.98e-34 134
MS.gene38224.t1 MTR_1g095560 26.562 448 267 14 44 438 49 487 3.63e-34 134
MS.gene38224.t1 MTR_2g018600 23.918 439 273 13 43 438 49 469 4.69e-34 133
MS.gene38224.t1 MTR_0003s0560 40.556 180 95 6 45 219 90 262 1.51e-33 129
MS.gene38224.t1 MTR_2g018590 24.434 442 268 15 43 438 48 469 1.62e-33 132
MS.gene38224.t1 MTR_8g099930 26.606 436 272 14 36 438 41 461 2.57e-33 131
MS.gene38224.t1 MTR_2g012860 27.506 429 264 15 44 438 57 472 1.17e-32 129
MS.gene38224.t1 MTR_3g434850 26.582 474 284 20 5 438 4 453 1.93e-32 128
MS.gene38224.t1 MTR_4g089155 26.185 443 264 14 29 429 54 475 4.10e-32 128
MS.gene38224.t1 MTR_4g021510 28.508 449 244 21 38 433 40 464 4.81e-32 127
MS.gene38224.t1 MTR_2g012850 26.761 426 261 14 44 434 51 460 1.29e-31 126
MS.gene38224.t1 MTR_4g021535 27.103 428 258 16 43 433 51 461 1.32e-31 126
MS.gene38224.t1 MTR_8g011350 25.346 434 237 15 40 402 41 458 2.94e-31 125
MS.gene38224.t1 MTR_4g021520 26.364 440 265 14 38 433 41 465 6.54e-31 124
MS.gene38224.t1 MTR_3g100420 26.018 442 257 16 43 433 69 491 2.67e-30 123
MS.gene38224.t1 MTR_2g009200 25.635 433 258 15 38 433 29 434 5.46e-29 118
MS.gene38224.t1 MTR_4g021500 26.207 435 253 17 43 433 490 900 1.67e-28 119
MS.gene38224.t1 MTR_4g021500 25.566 442 268 15 38 434 41 466 2.50e-27 115
MS.gene38224.t1 MTR_4g021490 26.067 445 260 18 38 433 41 465 3.01e-28 117
MS.gene38224.t1 MTR_4g021530 26.134 463 268 19 21 433 27 465 6.49e-28 115
MS.gene38224.t1 MTR_2g084530 27.214 463 273 18 10 429 6 447 1.08e-27 115
MS.gene38224.t1 MTR_4g021500 26.492 419 254 18 43 433 490 882 1.83e-27 116
MS.gene38224.t1 MTR_4g021500 25.566 442 268 15 38 434 41 466 2.08e-27 116
MS.gene38224.t1 MTR_3g045770 24.057 424 279 12 40 432 37 448 4.49e-27 113
MS.gene38224.t1 MTR_7g080180 35.326 184 103 7 44 217 44 221 2.09e-26 112
MS.gene38224.t1 MTR_7g080180 35.326 184 103 7 44 217 44 221 2.13e-26 111
MS.gene38224.t1 MTR_4g021520 26.303 403 239 13 38 397 41 428 5.42e-26 109
MS.gene38224.t1 MTR_2g063000 23.961 409 233 15 44 422 55 415 1.02e-25 109
MS.gene38224.t1 MTR_7g051430 32.227 211 127 7 16 215 14 219 2.29e-25 107
MS.gene38224.t1 MTR_4g021535 24.190 401 257 12 43 433 51 414 5.34e-25 107
MS.gene38224.t1 MTR_7g051430 32.227 211 127 7 16 215 14 219 8.67e-25 107
MS.gene38224.t1 MTR_1g102130 21.578 431 254 16 44 438 107 489 2.02e-15 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38224.t1 AT1G15000 58.432 421 166 5 35 453 28 441 9.66e-175 497
MS.gene38224.t1 AT3G10410 33.415 410 247 7 38 433 95 492 4.83e-70 231
MS.gene38224.t1 AT5G22980 32.258 403 255 6 44 436 100 494 2.97e-67 223
MS.gene38224.t1 AT3G45010 31.111 405 259 5 44 436 103 499 4.64e-66 220
MS.gene38224.t1 AT3G52000 30.467 407 251 10 45 433 81 473 2.05e-51 181
MS.gene38224.t1 AT3G52010 29.833 419 242 16 45 433 82 478 5.47e-45 164
MS.gene38224.t1 AT3G63470 31.051 409 239 14 45 429 98 487 7.75e-44 161
MS.gene38224.t1 AT2G05850 30.383 418 242 17 45 433 81 478 5.48e-43 158
MS.gene38224.t1 AT2G35780 27.765 425 257 12 44 438 46 450 4.54e-42 155
MS.gene38224.t1 AT2G35770 28.362 409 242 12 44 422 54 441 7.71e-41 152
MS.gene38224.t1 AT1G43780 26.013 469 299 12 11 438 8 469 8.31e-41 152
MS.gene38224.t1 AT3G07990 29.854 412 247 15 44 429 50 445 4.26e-40 150
MS.gene38224.t1 AT3G52020 27.229 415 258 16 45 433 96 492 8.68e-40 150
MS.gene38224.t1 AT1G73270 25.952 420 269 12 43 442 48 445 1.29e-38 145
MS.gene38224.t1 AT5G08260 27.644 416 250 15 56 433 68 470 1.44e-37 143
MS.gene38224.t1 AT5G23210 26.517 445 260 13 44 438 67 494 2.58e-37 143
MS.gene38224.t1 AT1G73270 25.721 416 267 12 43 438 48 441 6.59e-37 140
MS.gene38224.t1 AT3G12203 26.923 416 264 12 35 433 19 411 7.95e-37 140
MS.gene38224.t1 AT3G12203 26.923 416 264 12 35 433 40 432 1.01e-36 140
MS.gene38224.t1 AT5G36180 25.122 410 267 11 43 433 48 436 8.23e-36 137
MS.gene38224.t1 AT1G73300 24.390 410 270 11 43 433 48 436 1.05e-35 137
MS.gene38224.t1 AT1G73300 24.390 410 270 11 43 433 48 436 1.05e-35 137
MS.gene38224.t1 AT1G73290 25.298 419 268 13 34 433 41 433 1.36e-35 137
MS.gene38224.t1 AT2G22990 25.121 414 264 15 43 433 38 428 1.48e-35 137
MS.gene38224.t1 AT3G12203 27.157 394 250 11 57 433 1 374 2.14e-35 135
MS.gene38224.t1 AT4G12910 28.414 454 237 21 40 422 45 481 2.72e-35 137
MS.gene38224.t1 AT2G23000 24.450 409 275 12 43 433 40 432 7.25e-35 135
MS.gene38224.t1 AT2G23000 24.450 409 275 12 43 433 40 432 7.25e-35 135
MS.gene38224.t1 AT1G73310 25.304 411 265 12 43 433 48 436 7.85e-35 135
MS.gene38224.t1 AT2G22920 24.757 412 268 13 43 433 40 430 2.02e-34 134
MS.gene38224.t1 AT3G17180 27.336 428 260 16 44 433 55 469 4.48e-34 133
MS.gene38224.t1 AT1G73280 24.099 444 286 13 20 433 14 436 5.92e-34 132
MS.gene38224.t1 AT1G61130 27.725 422 251 16 44 429 47 450 8.62e-34 132
MS.gene38224.t1 AT2G23010 24.694 409 274 11 43 433 40 432 1.26e-33 131
MS.gene38224.t1 AT4G30810 26.429 420 262 13 44 433 54 456 1.52e-33 132
MS.gene38224.t1 AT4G15100 26.437 435 256 14 44 433 60 475 2.26e-33 132
MS.gene38224.t1 AT1G33540 24.886 438 270 11 43 438 44 464 2.39e-33 131
MS.gene38224.t1 AT1G11080 27.107 439 242 16 44 429 66 479 7.51e-33 130
MS.gene38224.t1 AT3G12230 26.341 410 262 13 43 433 42 430 7.89e-33 129
MS.gene38224.t1 AT1G11080 27.107 439 242 16 44 429 66 479 8.32e-33 130
MS.gene38224.t1 AT3G12240 25.854 410 264 14 43 433 43 431 9.19e-33 129
MS.gene38224.t1 AT2G22990 25.000 384 244 13 43 404 38 399 1.06e-32 129
MS.gene38224.t1 AT2G27920 26.379 417 238 14 62 429 56 452 1.07e-32 129
MS.gene38224.t1 AT1G73310 25.000 388 251 10 43 411 48 414 1.15e-32 129
MS.gene38224.t1 AT1G33540 24.828 435 268 11 46 438 4 421 1.39e-32 128
MS.gene38224.t1 AT2G22970 24.634 410 269 13 43 433 40 428 1.71e-32 128
MS.gene38224.t1 AT2G22990 25.000 384 244 13 43 404 38 399 1.80e-32 129
MS.gene38224.t1 AT1G73290 25.260 384 244 11 34 399 41 399 1.83e-32 127
MS.gene38224.t1 AT2G22920 24.934 377 243 11 43 399 40 396 2.22e-32 127
MS.gene38224.t1 AT4G30610 27.880 434 270 18 36 438 40 461 3.87e-32 128
MS.gene38224.t1 AT2G33530 26.995 426 257 17 44 433 49 456 5.51e-32 127
MS.gene38224.t1 AT2G23010 24.205 409 276 11 43 433 40 432 5.68e-32 127
MS.gene38224.t1 AT2G22980 23.415 410 270 12 43 433 41 425 1.10e-31 126
MS.gene38224.t1 AT5G23210 26.735 389 223 12 44 382 67 443 1.58e-31 126
MS.gene38224.t1 AT1G28110 26.683 416 269 12 44 433 47 452 8.03e-31 124
MS.gene38224.t1 AT1G28110 26.683 416 269 12 44 433 47 452 8.03e-31 124
MS.gene38224.t1 AT2G24010 25.891 421 270 13 44 438 46 450 8.98e-31 124
MS.gene38224.t1 AT3G10450 23.227 409 276 9 43 433 44 432 9.53e-31 123
MS.gene38224.t1 AT3G02110 28.058 417 247 15 44 422 53 454 1.67e-30 123
MS.gene38224.t1 AT3G56540 38.235 170 95 5 45 208 96 261 3.19e-30 118
MS.gene38224.t1 AT3G12220 25.060 419 269 15 35 433 37 430 3.35e-30 122
MS.gene38224.t1 AT4G12910 27.700 426 225 19 40 397 45 455 4.50e-30 122
MS.gene38224.t1 AT3G10450 23.153 406 274 9 46 433 4 389 5.52e-30 120
MS.gene38224.t1 AT2G24000 27.561 410 255 16 44 422 46 444 1.51e-29 120
MS.gene38224.t1 AT2G22970 24.211 380 250 11 43 404 40 399 2.02e-29 119
MS.gene38224.t1 AT2G22980 23.454 388 252 11 35 404 36 396 2.20e-29 119
MS.gene38224.t1 AT3G12220 25.000 408 264 14 46 433 15 400 2.64e-29 119
MS.gene38224.t1 AT2G22980 23.358 411 265 13 35 426 36 415 2.66e-29 119
MS.gene38224.t1 AT2G22970 24.211 380 250 11 43 404 40 399 2.84e-29 119
MS.gene38224.t1 AT2G22990 24.205 409 265 16 43 433 38 419 4.99e-29 118
MS.gene38224.t1 AT2G12480 25.250 400 270 15 44 433 47 427 3.97e-28 116
MS.gene38224.t1 AT5G42240 25.882 425 276 14 44 438 48 463 4.33e-28 116
MS.gene38224.t1 AT2G12480 24.372 398 274 13 44 433 47 425 4.71e-28 116
MS.gene38224.t1 AT2G12480 24.528 424 267 13 44 433 47 451 8.81e-28 115
MS.gene38224.t1 AT3G17180 26.904 394 238 15 44 400 55 435 1.08e-27 115
MS.gene38224.t1 AT5G23210 25.123 406 240 12 83 438 8 399 1.26e-27 114
MS.gene38224.t1 AT3G25420 32.609 184 114 4 40 217 40 219 4.90e-27 114
MS.gene38224.t1 AT5G23210 24.938 405 240 12 84 438 8 398 5.03e-27 112
MS.gene38224.t1 AT3G10450 23.280 378 252 9 43 402 44 401 6.51e-27 112
MS.gene38224.t1 AT5G42230 24.700 417 259 14 44 422 44 443 1.46e-26 112
MS.gene38224.t1 AT5G42230 24.700 417 259 14 44 422 44 443 1.46e-26 112
MS.gene38224.t1 AT3G12220 23.869 398 235 11 43 433 42 378 1.69e-26 110
MS.gene38224.t1 AT2G12480 24.311 399 274 14 44 433 47 426 2.38e-26 111
MS.gene38224.t1 AT2G24010 24.771 436 271 14 44 438 46 465 2.79e-26 111
MS.gene38224.t1 AT2G27920 25.441 397 229 13 81 429 3 380 5.16e-26 109
MS.gene38224.t1 AT5G36180 24.551 334 221 9 113 433 19 334 5.23e-26 108
MS.gene38224.t1 AT5G36180 24.551 334 221 9 113 433 19 334 5.23e-26 108
MS.gene38224.t1 AT3G10450 23.200 375 250 9 46 402 4 358 6.13e-26 108
MS.gene38224.t1 AT5G09640 24.145 468 295 15 10 433 9 460 3.59e-25 108
MS.gene38224.t1 AT2G24010 30.213 235 140 7 44 258 17 247 1.77e-23 101
MS.gene38224.t1 AT1G73280 22.455 334 228 9 113 433 19 334 4.92e-23 100
MS.gene38224.t1 AT1G73290 30.208 192 117 5 34 219 41 221 1.45e-22 98.2
MS.gene38224.t1 AT5G36180 24.503 302 199 7 113 402 19 303 2.31e-22 97.8
MS.gene38224.t1 AT2G22990 23.867 331 215 13 120 433 4 314 3.46e-22 97.4
MS.gene38224.t1 AT1G73310 24.038 312 206 8 113 411 19 312 5.48e-22 96.7
MS.gene38224.t1 AT1G73280 24.242 330 217 8 43 354 48 362 6.41e-22 97.4
MS.gene38224.t1 AT1G73280 22.630 327 222 9 120 433 1 309 8.57e-22 95.9
MS.gene38224.t1 AT2G24010 23.427 461 271 15 44 438 17 461 1.01e-21 97.8
MS.gene38224.t1 AT2G22920 25.347 288 181 9 43 310 40 313 1.20e-21 95.5
MS.gene38224.t1 AT5G23210 24.928 349 203 11 84 382 8 347 2.68e-21 95.5
MS.gene38224.t1 AT5G36180 24.749 299 196 7 113 399 19 300 5.32e-21 94.4
MS.gene38224.t1 AT2G22990 23.263 331 217 13 120 433 4 314 1.60e-20 92.4
MS.gene38224.t1 AT5G22960 32.934 167 87 4 32 195 21 165 6.61e-20 87.8
MS.gene38224.t1 AT2G22970 27.979 193 121 4 43 229 40 220 7.33e-20 90.5
MS.gene38224.t1 AT2G22980 23.795 332 214 10 43 354 41 353 2.10e-19 89.7
MS.gene38224.t1 AT2G27920 24.217 351 205 11 127 429 48 385 1.16e-17 85.1
MS.gene38224.t1 AT2G22980 22.148 298 197 9 120 404 4 279 3.73e-16 79.3

Find 112 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTACAAATGTTGTGGTTT+TGG 0.238119 5.3:+78483051 MS.gene38224:CDS
CATCGTCCTATTTATATTAC+TGG 0.245739 5.3:+78482338 MS.gene38224:CDS
GGTGCTTGGAATAGAATATT+TGG 0.246646 5.3:+78482173 MS.gene38224:CDS
CCACTTCTCATTTGGCTTCA+AGG 0.279137 5.3:+78482062 MS.gene38224:CDS
CACAAACTCCACTTCTCATT+TGG 0.289156 5.3:+78482054 MS.gene38224:CDS
AGGGAGATTTGGAAGGTAAA+TGG 0.303899 5.3:+78482995 MS.gene38224:CDS
AGAAATGTAGTAAAATTGTT+TGG 0.305716 5.3:+78482792 MS.gene38224:CDS
AATGAAAAGTGTAAAGTATA+TGG 0.327632 5.3:+78482835 MS.gene38224:CDS
AGTTAGTAGAGAGAAGGAAT+TGG 0.342651 5.3:+78482588 MS.gene38224:CDS
TGAATGCTGAGAGGGAGATT+TGG 0.347779 5.3:+78482984 MS.gene38224:CDS
CTCAAGCTATGATAGAAGAT+TGG 0.349871 5.3:+78483113 MS.gene38224:CDS
CTTTCACCAGTAATATAAAT+AGG 0.353685 5.3:-78482344 None:intergenic
TGATGCGAGAAGCCGTGTTT+TGG 0.354009 5.3:+78482622 MS.gene38224:CDS
AAAATATAGTATCCTATTGC+AGG 0.359314 5.3:-78482386 None:intergenic
ACAGTTTCATACCTCTTTCT+CGG 0.361030 5.3:+78481902 MS.gene38224:CDS
TATGATAGAAGATTGGGTTT+TGG 0.369050 5.3:+78483120 MS.gene38224:CDS
TGAAGCACTTCCCACAAAAT+CGG 0.376042 5.3:+78481950 MS.gene38224:CDS
ATTTGGCTTCAAGGTGGCCC+TGG 0.377060 5.3:+78482071 MS.gene38224:CDS
TTCATAGAATGTGTAGAAAA+TGG 0.377408 5.3:-78482006 None:intergenic
GGAAAGTATATTCCTGCAAT+AGG 0.387729 5.3:+78482374 MS.gene38224:CDS
GGAAAGTTCCTTATGAAGAT+TGG 0.388838 5.3:+78482693 MS.gene38224:CDS
AAGCACCAGGGTTCGGTTGA+AGG 0.410766 5.3:-78482157 None:intergenic
GCTGATAATGCTTATTATGC+TGG 0.411854 5.3:+78482509 MS.gene38224:CDS
TCAAGCTATGATAGAAGATT+GGG 0.412951 5.3:+78483114 MS.gene38224:CDS
CTTGATAATCCCATTGGAAC+CGG 0.413486 5.3:+78482206 MS.gene38224:CDS
GAAGTGGAAGTGGAAGTTAC+AGG 0.422934 5.3:-78481981 None:intergenic
TGGCCCTGGATGCTCCTCTA+TGG 0.435541 5.3:+78482085 MS.gene38224:CDS
TGTGTAGAAAATGGAGGAAG+TGG 0.442760 5.3:-78481997 None:intergenic
CTATTCCAAGCACCAGGGTT+CGG 0.444291 5.3:-78482164 None:intergenic
TTCAACCGAACCCTGGTGCT+TGG 0.445254 5.3:+78482159 MS.gene38224:CDS
TCCGCGACTGCGGTTTGATC+AGG 0.446115 5.3:-78482263 None:intergenic
AGTTATTGAAGGAGGAGATG+AGG 0.447309 5.3:+78482864 MS.gene38224:CDS
ATTACTGGTGAAAGCTATGC+TGG 0.449873 5.3:+78482353 MS.gene38224:CDS
GCTGGTGTGGCAATTGGTAA+TGG 0.450136 5.3:+78482452 MS.gene38224:CDS
TCAAGGTCAGCGCGATTTGA+GGG 0.450151 5.3:+78482898 MS.gene38224:CDS
GAAAATGGAGGAAGTGGAAG+TGG 0.451895 5.3:-78481991 None:intergenic
ATAGGACGATGTTTGAAAAC+AGG 0.451910 5.3:-78482326 None:intergenic
GTTATTGAAGGAGGAGATGA+GGG 0.455839 5.3:+78482865 MS.gene38224:CDS
TGAGTAACCATTTGAGTGAC+AGG 0.456839 5.3:-78482485 None:intergenic
GTGTTGTTCAAGTAGAGGCT+TGG 0.459918 5.3:+78482924 MS.gene38224:CDS
GCCGAGGTGAAGAAGGCCTT+AGG 0.462397 5.3:+78482740 MS.gene38224:CDS
GAAATGTAGTAAAATTGTTT+GGG 0.465315 5.3:+78482793 MS.gene38224:CDS
CTACTTTGTATGATTATTCG+CGG 0.473157 5.3:+78482672 MS.gene38224:CDS
TGTTGTTCAAGTAGAGGCTT+GGG 0.474736 5.3:+78482925 MS.gene38224:CDS
GATCTGTTGCAAAACATGAC+AGG 0.477010 5.3:+78482644 MS.gene38224:CDS
GAAGCACTTCCCACAAAATC+GGG 0.477743 5.3:+78481951 MS.gene38224:CDS
GAATTCAAAGGTTGATCAGC+AGG 0.480763 5.3:-78483091 None:intergenic
AGATTAGATGATGAAGAAGA+AGG 0.481100 5.3:+78481830 None:intergenic
AATTTAGCTGGTGTGGCAAT+TGG 0.481203 5.3:+78482446 MS.gene38224:CDS
TACACTGAAGCCGGTTCCAA+TGG 0.482170 5.3:-78482216 None:intergenic
AGTGAACTGGTGACACGATA+AGG 0.483546 5.3:-78482131 None:intergenic
CCGACCATAGAGGAGCATCC+AGG 0.494292 5.3:-78482089 None:intergenic
ATCAAGGTCAGCGCGATTTG+AGG 0.495996 5.3:+78482897 MS.gene38224:CDS
AATAGACCCTGTCACTCAAA+TGG 0.501649 5.3:+78482478 MS.gene38224:CDS
TATGGTAGAGAAGTTATTGA+AGG 0.501796 5.3:+78482853 MS.gene38224:CDS
AGAAGTGGAGTTTGTGAGAG+AGG 0.513484 5.3:-78482047 None:intergenic
CCGAGGTGAAGAAGGCCTTA+GGG 0.514988 5.3:+78482741 MS.gene38224:CDS
AGAGGTATGAAACTGTAAGA+AGG 0.518279 5.3:-78481895 None:intergenic
CTGTTGAGTTAGTAGAGAGA+AGG 0.518494 5.3:+78482582 MS.gene38224:CDS
GCGACTGCGGTTTGATCAGG+TGG 0.520438 5.3:-78482260 None:intergenic
GAATATCGCCGAGGTGAAGA+AGG 0.524568 5.3:+78482733 MS.gene38224:CDS
ACACTGAAGCCGGTTCCAAT+GGG 0.529318 5.3:-78482215 None:intergenic
TTTGTGGGAAGTGCTTCATA+GGG 0.531819 5.3:-78481945 None:intergenic
GCAACCAACCAATCTTCATA+AGG 0.532058 5.3:-78482701 None:intergenic
AGCACCAGGGTTCGGTTGAA+GGG 0.533711 5.3:-78482156 None:intergenic
AATATTCTATTCCAAGCACC+AGG 0.536790 5.3:-78482170 None:intergenic
ATGAGGGTGTTGTTGTATCA+AGG 0.538392 5.3:+78482881 MS.gene38224:CDS
GGTAGAGAAGTTATTGAAGG+AGG 0.540034 5.3:+78482856 MS.gene38224:CDS
AAGGTAAATGGAGAGGTAGC+TGG 0.540195 5.3:+78483007 MS.gene38224:CDS
TCAAGAAATTCTGTATATGA+TGG 0.541949 5.3:+78483181 MS.gene38224:CDS
AGTTCCTTATGAAGATTGGT+TGG 0.542038 5.3:+78482697 MS.gene38224:CDS
ACTGAAAGAGTGAATTTAGC+TGG 0.543185 5.3:+78482434 MS.gene38224:CDS
AGTTTGTGAGAGAGGTGAAG+TGG 0.549455 5.3:-78482039 None:intergenic
ATCATAGCTTGAGAATTCAA+AGG 0.554096 5.3:-78483103 None:intergenic
CTTCTCATTTGGCTTCAAGG+TGG 0.555035 5.3:+78482065 MS.gene38224:CDS
AGAATGTGAGACCGAGAAAG+AGG 0.555113 5.3:-78481913 None:intergenic
CGACCATAGAGGAGCATCCA+GGG 0.557088 5.3:-78482088 None:intergenic
CGGTTGAAGGGTGAGTGAAC+TGG 0.558471 5.3:-78482144 None:intergenic
CGTTGAAGCTACACTGAAGC+CGG 0.564081 5.3:-78482225 None:intergenic
TGAGAGGCAGAAGAATGAGC+TGG 0.566827 5.3:+78482541 MS.gene38224:CDS
GTCGGCAACTTCTACGAACT+CGG 0.567355 5.3:+78482107 MS.gene38224:CDS
TGATCAGGTGGAATCTCTTG+CGG 0.569682 5.3:-78482248 None:intergenic
CCTTGAAGCCAAATGAGAAG+TGG 0.570775 5.3:-78482062 None:intergenic
ATCTGTTGCAAAACATGACA+GGG 0.572050 5.3:+78482645 MS.gene38224:CDS
GGTCGGTGTTGTTCAAGTAG+AGG 0.576352 5.3:+78482919 MS.gene38224:CDS
TGAAGACTATGAAGTGGGAA+GGG 0.578533 5.3:+78482948 MS.gene38224:CDS
TTCATCAACATTCACCCCTA+AGG 0.579891 5.3:-78482756 None:intergenic
TGGAAGTGGAAGTTACAGGT+AGG 0.584581 5.3:-78481977 None:intergenic
GAAGTCACTTACAAATGTTG+TGG 0.585885 5.3:+78483045 MS.gene38224:CDS
GTGAAGACTATGAAGTGGGA+AGG 0.588138 5.3:+78482947 MS.gene38224:CDS
CCTGGATGCTCCTCTATGGT+CGG 0.589076 5.3:+78482089 MS.gene38224:CDS
ACCTGATCAAACCGCAGTCG+CGG 0.589305 5.3:+78482262 MS.gene38224:CDS
GGTCAGCGCGATTTGAGGGT+CGG 0.591816 5.3:+78482902 MS.gene38224:CDS
TGCTGAGAGGGAGATTTGGA+AGG 0.592166 5.3:+78482988 MS.gene38224:CDS
GATTTGGAAGGTAAATGGAG+AGG 0.595537 5.3:+78483000 MS.gene38224:CDS
CTCACCCTTCAACCGAACCC+TGG 0.603960 5.3:+78482152 MS.gene38224:CDS
CGAGGTGAAGAAGGCCTTAG+GGG 0.621823 5.3:+78482742 MS.gene38224:CDS
ATAGAATGTGTAGAAAATGG+AGG 0.624076 5.3:-78482003 None:intergenic
TTGGGTGAAGACTATGAAGT+GGG 0.627868 5.3:+78482943 MS.gene38224:CDS
CTTGGGTGAAGACTATGAAG+TGG 0.631263 5.3:+78482942 MS.gene38224:CDS
AAGAGTGAATTTAGCTGGTG+TGG 0.636029 5.3:+78482439 MS.gene38224:CDS
CCCTAAGGCCTTCTTCACCT+CGG 0.643912 5.3:-78482741 None:intergenic
GAAAAGATGTTCCGCGACTG+CGG 0.651051 5.3:-78482273 None:intergenic
ATGCTGGATTGATCAATGAG+AGG 0.656499 5.3:+78482525 MS.gene38224:CDS
GTAGAAGTTGCCGACCATAG+AGG 0.665153 5.3:-78482099 None:intergenic
TTGTGGGAAGTGCTTCATAG+GGG 0.670126 5.3:-78481944 None:intergenic
TTTGCAACAGATCCAAAACA+CGG 0.674823 5.3:-78482634 None:intergenic
GAGTAACCATTTGAGTGACA+GGG 0.711890 5.3:-78482484 None:intergenic
TCAGTTCTTGAATATCGCCG+AGG 0.712182 5.3:+78482724 MS.gene38224:CDS
ATATTCTATTCCAAGCACCA+GGG 0.715261 5.3:-78482169 None:intergenic
AATGAGTGTACTGATGAACA+AGG 0.751397 5.3:-78481865 None:intergenic
GAGTGTACTGATGAACAAGG+TGG 0.804627 5.3:-78481862 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATGTAGTAAAATTGTT+TGG + chr5.3:78482792-78482811 MS.gene38224:CDS 20.0%
!! GAAATGTAGTAAAATTGTTT+GGG + chr5.3:78482793-78482812 MS.gene38224:CDS 20.0%
!!! AATGAAAAGTGTAAAGTATA+TGG + chr5.3:78482835-78482854 MS.gene38224:CDS 20.0%
! AAAATATAGTATCCTATTGC+AGG - chr5.3:78482389-78482408 None:intergenic 25.0%
! CTTTCACCAGTAATATAAAT+AGG - chr5.3:78482347-78482366 None:intergenic 25.0%
! TCAAGAAATTCTGTATATGA+TGG + chr5.3:78483181-78483200 MS.gene38224:CDS 25.0%
! TTCATAGAATGTGTAGAAAA+TGG - chr5.3:78482009-78482028 None:intergenic 25.0%
ATAGAATGTGTAGAAAATGG+AGG - chr5.3:78482006-78482025 None:intergenic 30.0%
ATCATAGCTTGAGAATTCAA+AGG - chr5.3:78483106-78483125 None:intergenic 30.0%
CATCGTCCTATTTATATTAC+TGG + chr5.3:78482338-78482357 MS.gene38224:CDS 30.0%
CTACTTTGTATGATTATTCG+CGG + chr5.3:78482672-78482691 MS.gene38224:CDS 30.0%
TAGCTGGTTATGTACAAAAA+TGG + chr5.3:78483023-78483042 MS.gene38224:CDS 30.0%
TATGGTAGAGAAGTTATTGA+AGG + chr5.3:78482853-78482872 MS.gene38224:CDS 30.0%
TCAAGCTATGATAGAAGATT+GGG + chr5.3:78483114-78483133 MS.gene38224:CDS 30.0%
TGGGATTATCAAGAAAAACA+AGG - chr5.3:78482199-78482218 None:intergenic 30.0%
! ACTTACAAATGTTGTGGTTT+TGG + chr5.3:78483051-78483070 MS.gene38224:CDS 30.0%
! CTTACAAATGTTGTGGTTTT+GGG + chr5.3:78483052-78483071 MS.gene38224:CDS 30.0%
! TATGATAGAAGATTGGGTTT+TGG + chr5.3:78483120-78483139 MS.gene38224:CDS 30.0%
!! GTTTTTCTTGATAATCCCAT+TGG + chr5.3:78482200-78482219 MS.gene38224:CDS 30.0%
!! TTACAAATGTTGTGGTTTTG+GGG + chr5.3:78483053-78483072 MS.gene38224:CDS 30.0%
AATATTCTATTCCAAGCACC+AGG - chr5.3:78482173-78482192 None:intergenic 35.0%
ACAGTTTCATACCTCTTTCT+CGG + chr5.3:78481902-78481921 MS.gene38224:CDS 35.0%
ACTGAAAGAGTGAATTTAGC+TGG + chr5.3:78482434-78482453 MS.gene38224:CDS 35.0%
AGTTAGTAGAGAGAAGGAAT+TGG + chr5.3:78482588-78482607 MS.gene38224:CDS 35.0%
AGTTCCTTATGAAGATTGGT+TGG + chr5.3:78482697-78482716 MS.gene38224:CDS 35.0%
ATAGGACGATGTTTGAAAAC+AGG - chr5.3:78482329-78482348 None:intergenic 35.0%
ATATTCTATTCCAAGCACCA+GGG - chr5.3:78482172-78482191 None:intergenic 35.0%
ATCTGTTGCAAAACATGACA+GGG + chr5.3:78482645-78482664 MS.gene38224:CDS 35.0%
CTCAAGCTATGATAGAAGAT+TGG + chr5.3:78483113-78483132 MS.gene38224:CDS 35.0%
GAAGTCACTTACAAATGTTG+TGG + chr5.3:78483045-78483064 MS.gene38224:CDS 35.0%
GGAAAGTTCCTTATGAAGAT+TGG + chr5.3:78482693-78482712 MS.gene38224:CDS 35.0%
GGTGCTTGGAATAGAATATT+TGG + chr5.3:78482173-78482192 MS.gene38224:CDS 35.0%
TTTGCAACAGATCCAAAACA+CGG - chr5.3:78482637-78482656 None:intergenic 35.0%
! AATGAGTGTACTGATGAACA+AGG - chr5.3:78481868-78481887 None:intergenic 35.0%
! AGAATTTTGTGAATGCTGAG+AGG + chr5.3:78482975-78482994 MS.gene38224:CDS 35.0%
! AGAGGTATGAAACTGTAAGA+AGG - chr5.3:78481898-78481917 None:intergenic 35.0%
! GAATTTTGTGAATGCTGAGA+GGG + chr5.3:78482976-78482995 MS.gene38224:CDS 35.0%
! GCTGATAATGCTTATTATGC+TGG + chr5.3:78482509-78482528 MS.gene38224:CDS 35.0%
! GGAAAGTATATTCCTGCAAT+AGG + chr5.3:78482374-78482393 MS.gene38224:CDS 35.0%
!!! AGAAGATTGGGTTTTGGAAA+AGG + chr5.3:78483126-78483145 MS.gene38224:CDS 35.0%
!!! GAAGATTGGGTTTTGGAAAA+GGG + chr5.3:78483127-78483146 MS.gene38224:CDS 35.0%
!!! GTTTTGGAAAAGGGTTTGTT+TGG + chr5.3:78483136-78483155 MS.gene38224:CDS 35.0%
!!! TACAAATGTTGTGGTTTTGG+GGG + chr5.3:78483054-78483073 MS.gene38224:CDS 35.0%
AAGAGTGAATTTAGCTGGTG+TGG + chr5.3:78482439-78482458 MS.gene38224:CDS 40.0%
AATAGACCCTGTCACTCAAA+TGG + chr5.3:78482478-78482497 MS.gene38224:CDS 40.0%
AATTTAGCTGGTGTGGCAAT+TGG + chr5.3:78482446-78482465 MS.gene38224:CDS 40.0%
AGGGAGATTTGGAAGGTAAA+TGG + chr5.3:78482995-78483014 MS.gene38224:CDS 40.0%
AGTTATTGAAGGAGGAGATG+AGG + chr5.3:78482864-78482883 MS.gene38224:CDS 40.0%
ATGCTGGATTGATCAATGAG+AGG + chr5.3:78482525-78482544 MS.gene38224:CDS 40.0%
ATTACTGGTGAAAGCTATGC+TGG + chr5.3:78482353-78482372 MS.gene38224:CDS 40.0%
CACAAACTCCACTTCTCATT+TGG + chr5.3:78482054-78482073 MS.gene38224:CDS 40.0%
CTGTTGAGTTAGTAGAGAGA+AGG + chr5.3:78482582-78482601 MS.gene38224:CDS 40.0%
GAGTAACCATTTGAGTGACA+GGG - chr5.3:78482487-78482506 None:intergenic 40.0%
GATCTGTTGCAAAACATGAC+AGG + chr5.3:78482644-78482663 MS.gene38224:CDS 40.0%
GATTTGGAAGGTAAATGGAG+AGG + chr5.3:78483000-78483019 MS.gene38224:CDS 40.0%
GCAACCAACCAATCTTCATA+AGG - chr5.3:78482704-78482723 None:intergenic 40.0%
GGTAGAGAAGTTATTGAAGG+AGG + chr5.3:78482856-78482875 MS.gene38224:CDS 40.0%
GTTATTGAAGGAGGAGATGA+GGG + chr5.3:78482865-78482884 MS.gene38224:CDS 40.0%
TGAAGACTATGAAGTGGGAA+GGG + chr5.3:78482948-78482967 MS.gene38224:CDS 40.0%
TGAGTAACCATTTGAGTGAC+AGG - chr5.3:78482488-78482507 None:intergenic 40.0%
TGTGTAGAAAATGGAGGAAG+TGG - chr5.3:78482000-78482019 None:intergenic 40.0%
TGTTGTTCAAGTAGAGGCTT+GGG + chr5.3:78482925-78482944 MS.gene38224:CDS 40.0%
TTCATCAACATTCACCCCTA+AGG - chr5.3:78482759-78482778 None:intergenic 40.0%
TTGGGTGAAGACTATGAAGT+GGG + chr5.3:78482943-78482962 MS.gene38224:CDS 40.0%
! ATCTTTTCGCTGCTATCACA+AGG + chr5.3:78482288-78482307 MS.gene38224:CDS 40.0%
! CTTGATAATCCCATTGGAAC+CGG + chr5.3:78482206-78482225 MS.gene38224:CDS 40.0%
! GAATTCAAAGGTTGATCAGC+AGG - chr5.3:78483094-78483113 None:intergenic 40.0%
! TGAAGCACTTCCCACAAAAT+CGG + chr5.3:78481950-78481969 MS.gene38224:CDS 40.0%
!! ATGAGGGTGTTGTTGTATCA+AGG + chr5.3:78482881-78482900 MS.gene38224:CDS 40.0%
!! TTTGTGGGAAGTGCTTCATA+GGG - chr5.3:78481948-78481967 None:intergenic 40.0%
!!! ACAAATGTTGTGGTTTTGGG+GGG + chr5.3:78483055-78483074 MS.gene38224:CDS 40.0%
!!! TTTTGTGGGAAGTGCTTCAT+AGG - chr5.3:78481949-78481968 None:intergenic 40.0%
AAGGTAAATGGAGAGGTAGC+TGG + chr5.3:78483007-78483026 MS.gene38224:CDS 45.0%
AGAAGTGGAGTTTGTGAGAG+AGG - chr5.3:78482050-78482069 None:intergenic 45.0%
AGAATGTGAGACCGAGAAAG+AGG - chr5.3:78481916-78481935 None:intergenic 45.0%
AGTGAACTGGTGACACGATA+AGG - chr5.3:78482134-78482153 None:intergenic 45.0%
AGTTTGTGAGAGAGGTGAAG+TGG - chr5.3:78482042-78482061 None:intergenic 45.0%
CCTTGAAGCCAAATGAGAAG+TGG - chr5.3:78482065-78482084 None:intergenic 45.0%
CTTGGGTGAAGACTATGAAG+TGG + chr5.3:78482942-78482961 MS.gene38224:CDS 45.0%
GAAAATGGAGGAAGTGGAAG+TGG - chr5.3:78481994-78482013 None:intergenic 45.0%
GAAGTGGAAGTGGAAGTTAC+AGG - chr5.3:78481984-78482003 None:intergenic 45.0%
GTGAAGACTATGAAGTGGGA+AGG + chr5.3:78482947-78482966 MS.gene38224:CDS 45.0%
TCAGTTCTTGAATATCGCCG+AGG + chr5.3:78482724-78482743 MS.gene38224:CDS 45.0%
TGAATGCTGAGAGGGAGATT+TGG + chr5.3:78482984-78483003 MS.gene38224:CDS 45.0%
TGATCAGGTGGAATCTCTTG+CGG - chr5.3:78482251-78482270 None:intergenic 45.0%
TGGAAGTGGAAGTTACAGGT+AGG - chr5.3:78481980-78481999 None:intergenic 45.0%
! AGGTAGGTAACCCGATTTTG+TGG - chr5.3:78481964-78481983 None:intergenic 45.0%
! CCACTTCTCATTTGGCTTCA+AGG + chr5.3:78482062-78482081 MS.gene38224:CDS 45.0%
! CTTCTCATTTGGCTTCAAGG+TGG + chr5.3:78482065-78482084 MS.gene38224:CDS 45.0%
! GAAGCACTTCCCACAAAATC+GGG + chr5.3:78481951-78481970 MS.gene38224:CDS 45.0%
! GAGTGTACTGATGAACAAGG+TGG - chr5.3:78481865-78481884 None:intergenic 45.0%
! GGTAGGTAACCCGATTTTGT+GGG - chr5.3:78481963-78481982 None:intergenic 45.0%
! GTGTTGTTCAAGTAGAGGCT+TGG + chr5.3:78482924-78482943 MS.gene38224:CDS 45.0%
!! TTGTGGGAAGTGCTTCATAG+GGG - chr5.3:78481947-78481966 None:intergenic 45.0%
ATCAAGGTCAGCGCGATTTG+AGG + chr5.3:78482897-78482916 MS.gene38224:CDS 50.0%
CGTTGAAGCTACACTGAAGC+CGG - chr5.3:78482228-78482247 None:intergenic 50.0%
CTATTCCAAGCACCAGGGTT+CGG - chr5.3:78482167-78482186 None:intergenic 50.0%
GAAAAGATGTTCCGCGACTG+CGG - chr5.3:78482276-78482295 None:intergenic 50.0%
GAATATCGCCGAGGTGAAGA+AGG + chr5.3:78482733-78482752 MS.gene38224:CDS 50.0%
GCTGGTGTGGCAATTGGTAA+TGG + chr5.3:78482452-78482471 MS.gene38224:CDS 50.0%
GTAGAAGTTGCCGACCATAG+AGG - chr5.3:78482102-78482121 None:intergenic 50.0%
GTCGGCAACTTCTACGAACT+CGG + chr5.3:78482107-78482126 MS.gene38224:CDS 50.0%
TCAAGGTCAGCGCGATTTGA+GGG + chr5.3:78482898-78482917 MS.gene38224:CDS 50.0%
TGAGAGGCAGAAGAATGAGC+TGG + chr5.3:78482541-78482560 MS.gene38224:CDS 50.0%
TGCTGAGAGGGAGATTTGGA+AGG + chr5.3:78482988-78483007 MS.gene38224:CDS 50.0%
! ACACTGAAGCCGGTTCCAAT+GGG - chr5.3:78482218-78482237 None:intergenic 50.0%
! TACACTGAAGCCGGTTCCAA+TGG - chr5.3:78482219-78482238 None:intergenic 50.0%
! TGATGCGAGAAGCCGTGTTT+TGG + chr5.3:78482622-78482641 MS.gene38224:CDS 50.0%
!! GGTCGGTGTTGTTCAAGTAG+AGG + chr5.3:78482919-78482938 MS.gene38224:CDS 50.0%
!!! AATGTTGTGGTTTTGGGGGG+TGG + chr5.3:78483058-78483077 MS.gene38224:CDS 50.0%
ACCTGATCAAACCGCAGTCG+CGG + chr5.3:78482262-78482281 MS.gene38224:CDS 55.0%
CCCTAAGGCCTTCTTCACCT+CGG - chr5.3:78482744-78482763 None:intergenic 55.0%
CCGAGGTGAAGAAGGCCTTA+GGG + chr5.3:78482741-78482760 MS.gene38224:CDS 55.0%
CCTGGATGCTCCTCTATGGT+CGG + chr5.3:78482089-78482108 MS.gene38224:CDS 55.0%
CGAGGTGAAGAAGGCCTTAG+GGG + chr5.3:78482742-78482761 MS.gene38224:CDS 55.0%
CGGTTGAAGGGTGAGTGAAC+TGG - chr5.3:78482147-78482166 None:intergenic 55.0%
TTCAACCGAACCCTGGTGCT+TGG + chr5.3:78482159-78482178 MS.gene38224:CDS 55.0%
! AAGCACCAGGGTTCGGTTGA+AGG - chr5.3:78482160-78482179 None:intergenic 55.0%
! AGCACCAGGGTTCGGTTGAA+GGG - chr5.3:78482159-78482178 None:intergenic 55.0%
! ATTTGGCTTCAAGGTGGCCC+TGG + chr5.3:78482071-78482090 MS.gene38224:CDS 55.0%
!! CGACCATAGAGGAGCATCCA+GGG - chr5.3:78482091-78482110 None:intergenic 55.0%
CTCACCCTTCAACCGAACCC+TGG + chr5.3:78482152-78482171 MS.gene38224:CDS 60.0%
GCCGAGGTGAAGAAGGCCTT+AGG + chr5.3:78482740-78482759 MS.gene38224:CDS 60.0%
GCGACTGCGGTTTGATCAGG+TGG - chr5.3:78482263-78482282 None:intergenic 60.0%
GGTCAGCGCGATTTGAGGGT+CGG + chr5.3:78482902-78482921 MS.gene38224:CDS 60.0%
TCCGCGACTGCGGTTTGATC+AGG - chr5.3:78482266-78482285 None:intergenic 60.0%
TGGCCCTGGATGCTCCTCTA+TGG + chr5.3:78482085-78482104 MS.gene38224:CDS 60.0%
!! CCGACCATAGAGGAGCATCC+AGG - chr5.3:78482092-78482111 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 78481840 78483207 78481840 ID=MS.gene38224
chr5.3 mRNA 78481840 78483207 78481840 ID=MS.gene38224.t1;Parent=MS.gene38224
chr5.3 exon 78481840 78483207 78481840 ID=MS.gene38224.t1.exon1;Parent=MS.gene38224.t1
chr5.3 CDS 78481840 78483207 78481840 ID=cds.MS.gene38224.t1;Parent=MS.gene38224.t1
Gene Sequence

>MS.gene38224

ATGAAGAAGAAGGAAGACTCAACCACCTTGTTCATCAGTACACTCATTTTCTTCTCCTTCTTACAGTTTCATACCTCTTTCTCGGTCTCACATTCTTCGACATTCCCCTATGAAGCACTTCCCACAAAATCGGGTTACCTACCTGTAACTTCCACTTCCACTTCCTCCATTTTCTACACATTCTATGAAGCACAGAACTCCACTTCACCTCTCTCACAAACTCCACTTCTCATTTGGCTTCAAGGTGGCCCTGGATGCTCCTCTATGGTCGGCAACTTCTACGAACTCGGACCTTATCGTGTCACCAGTTCACTCACCCTTCAACCGAACCCTGGTGCTTGGAATAGAATATTTGGCCTTGTTTTTCTTGATAATCCCATTGGAACCGGCTTCAGTGTAGCTTCAACGCCGCAAGAGATTCCACCTGATCAAACCGCAGTCGCGGAACATCTTTTCGCTGCTATCACAAGGTTTGTTGAACTTGATCCTGTTTTCAAACATCGTCCTATTTATATTACTGGTGAAAGCTATGCTGGAAAGTATATTCCTGCAATAGGATACTATATTTTAGAGAAGAATGCTAAGTTGAAAAGCACTGAAAGAGTGAATTTAGCTGGTGTGGCAATTGGTAATGGACTAATAGACCCTGTCACTCAAATGGTTACTCATGCTGATAATGCTTATTATGCTGGATTGATCAATGAGAGGCAGAAGAATGAGCTGGAAAAACTTCAACTTGAAGCTGTTGAGTTAGTAGAGAGAAGGAATTGGAGTGAAGCAACTGATGCGAGAAGCCGTGTTTTGGATCTGTTGCAAAACATGACAGGGTTTGCTACTTTGTATGATTATTCGCGGAAAGTTCCTTATGAAGATTGGTTGGTTGCTCAGTTCTTGAATATCGCCGAGGTGAAGAAGGCCTTAGGGGTGAATGTTGATGAATCATTTGTTTATGAGAAATGTAGTAAAATTGTTTGGGCTGCATTGCATGCTGATTTAATGAAAAGTGTAAAGTATATGGTAGAGAAGTTATTGAAGGAGGAGATGAGGGTGTTGTTGTATCAAGGTCAGCGCGATTTGAGGGTCGGTGTTGTTCAAGTAGAGGCTTGGGTGAAGACTATGAAGTGGGAAGGGATTGAGAATTTTGTGAATGCTGAGAGGGAGATTTGGAAGGTAAATGGAGAGGTAGCTGGTTATGTACAAAAATGGAAGTCACTTACAAATGTTGTGGTTTTGGGGGGTGGTCATCTTTTGCCTGCTGATCAACCTTTGAATTCTCAAGCTATGATAGAAGATTGGGTTTTGGAAAAGGGTTTGTTTGGAAGTGTGTCTTATCGAAATGTATCAAGAAATTCTGTATATGATGGATGA
Protein sequence

>MS.gene38224.t1

MKKKEDSTTLFISTLIFFSFLQFHTSFSVSHSSTFPYEALPTKSGYLPVTSTSTSSIFYTFYEAQNSTSPLSQTPLLIWLQGGPGCSSMVGNFYELGPYRVTSSLTLQPNPGAWNRIFGLVFLDNPIGTGFSVASTPQEIPPDQTAVAEHLFAAITRFVELDPVFKHRPIYITGESYAGKYIPAIGYYILEKNAKLKSTERVNLAGVAIGNGLIDPVTQMVTHADNAYYAGLINERQKNELEKLQLEAVELVERRNWSEATDARSRVLDLLQNMTGFATLYDYSRKVPYEDWLVAQFLNIAEVKKALGVNVDESFVYEKCSKIVWAALHADLMKSVKYMVEKLLKEEMRVLLYQGQRDLRVGVVQVEAWVKTMKWEGIENFVNAEREIWKVNGEVAGYVQKWKSLTNVVVLGGGHLLPADQPLNSQAMIEDWVLEKGLFGSVSYRNVSRNSVYDG