AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028920.t1 MTR_2g090255 97.585 207 5 0 4 210 46 252 1.54e-152 423
MS.gene028920.t1 MTR_0040s0140 83.575 207 34 0 4 210 50 256 8.53e-138 386
MS.gene028920.t1 MTR_5g076950 58.738 206 84 1 5 210 60 264 8.86e-90 265
MS.gene028920.t1 MTR_5g075320 56.311 206 88 1 5 210 48 251 2.44e-85 253
MS.gene028920.t1 MTR_3g435430 54.854 206 91 1 5 210 44 247 4.48e-83 247
MS.gene028920.t1 MTR_3g094060 55.340 206 90 1 5 210 50 253 5.04e-83 247
MS.gene028920.t1 MTR_3g094040 55.340 206 90 1 5 210 50 253 1.38e-82 246
MS.gene028920.t1 MTR_4g081950 54.854 206 91 1 5 210 80 283 3.02e-82 246
MS.gene028920.t1 MTR_5g079950 52.427 206 98 0 5 210 52 257 5.43e-82 244
MS.gene028920.t1 MTR_2g097030 52.427 206 98 0 5 210 53 258 1.67e-81 243
MS.gene028920.t1 MTR_5g041700 52.913 206 95 1 5 210 44 247 4.16e-81 242
MS.gene028920.t1 MTR_3g064510 56.542 214 85 4 4 210 72 284 5.79e-81 243
MS.gene028920.t1 MTR_7g061720 51.456 206 100 0 5 210 51 256 5.87e-81 242
MS.gene028920.t1 MTR_3g466790 54.854 206 91 1 5 210 51 254 2.65e-80 240
MS.gene028920.t1 MTR_3g466760 54.854 206 91 1 5 210 57 260 2.79e-80 240
MS.gene028920.t1 MTR_7g013140 51.456 206 98 1 3 208 45 248 2.28e-77 233
MS.gene028920.t1 MTR_4g063975 51.942 206 99 0 5 210 51 256 1.70e-76 231
MS.gene028920.t1 MTR_7g011060 50.971 206 91 2 5 210 45 240 3.67e-76 229
MS.gene028920.t1 MTR_7g110990 52.683 205 93 3 5 206 31 234 4.42e-74 224
MS.gene028920.t1 MTR_7g111010 52.683 205 93 3 5 206 46 249 4.96e-74 224
MS.gene028920.t1 MTR_7g013150 49.515 206 102 1 3 208 47 250 1.08e-73 223
MS.gene028920.t1 MTR_1g085460 52.174 207 95 3 5 208 49 254 1.11e-73 223
MS.gene028920.t1 MTR_4g124340 51.456 206 99 1 5 209 78 283 1.28e-73 224
MS.gene028920.t1 MTR_8g058990 50.732 205 99 1 4 208 48 250 9.13e-73 221
MS.gene028920.t1 MTR_7g013120 50.481 208 100 2 3 209 46 251 3.84e-71 217
MS.gene028920.t1 MTR_8g464350 49.020 204 102 1 3 206 48 249 2.66e-70 215
MS.gene028920.t1 MTR_1g026020 46.117 206 108 2 5 208 48 252 4.32e-67 206
MS.gene028920.t1 MTR_6g012520 52.427 206 88 2 5 210 47 242 1.88e-66 204
MS.gene028920.t1 MTR_4g102450 45.813 203 108 2 5 206 55 256 2.77e-61 192
MS.gene028920.t1 MTR_5g011210 43.902 205 113 2 5 208 56 259 4.17e-60 189
MS.gene028920.t1 MTR_0008s0120 50.926 108 53 0 100 207 88 195 3.13e-35 123
MS.gene028920.t1 MTR_6g012500 53.000 100 47 0 111 210 181 280 5.14e-33 120
MS.gene028920.t1 MTR_2g090270 29.630 216 126 8 5 208 54 255 4.87e-25 99.0
MS.gene028920.t1 MTR_4g028640 31.651 218 114 11 5 206 61 259 1.20e-23 95.1
MS.gene028920.t1 MTR_2g090265 26.852 216 132 7 5 208 52 253 9.86e-23 92.8
MS.gene028920.t1 MTR_0122s0020 26.852 216 132 6 5 208 60 261 1.10e-22 92.8
MS.gene028920.t1 MTR_0118s0070 32.727 220 120 12 2 206 64 270 1.49e-22 92.4
MS.gene028920.t1 MTR_1g085365 50.000 56 28 0 155 210 4 59 2.32e-12 60.1
MS.gene028920.t1 MTR_0122s0020 27.044 159 91 5 5 152 60 204 2.56e-12 63.5
MS.gene028920.t1 MTR_4g075790 27.727 220 120 13 5 206 40 238 4.67e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028920.t1 AT4G38210 69.417 206 63 0 5 210 49 254 1.23e-111 320
MS.gene028920.t1 AT3G03220 54.854 206 92 1 5 210 59 263 4.86e-85 253
MS.gene028920.t1 AT3G55500 54.369 206 94 0 5 210 53 258 3.12e-83 248
MS.gene028920.t1 AT5G02260 51.456 206 100 0 5 210 51 256 7.23e-83 247
MS.gene028920.t1 AT2G39700 52.427 206 98 0 5 210 50 255 1.38e-82 246
MS.gene028920.t1 AT2G37640 53.398 206 96 0 5 210 30 235 2.34e-82 245
MS.gene028920.t1 AT2G37640 53.398 206 96 0 5 210 55 260 2.62e-82 246
MS.gene028920.t1 AT5G05290 53.623 207 93 2 5 210 51 255 7.65e-82 244
MS.gene028920.t1 AT2G40610 54.106 207 92 2 5 210 49 253 2.33e-81 243
MS.gene028920.t1 AT5G56320 51.942 206 97 1 5 210 48 251 4.49e-81 242
MS.gene028920.t1 AT5G56320 51.942 206 97 1 5 210 48 251 4.49e-81 242
MS.gene028920.t1 AT5G56320 51.942 206 97 1 5 210 48 251 2.58e-80 242
MS.gene028920.t1 AT1G69530 54.854 206 91 1 5 210 46 249 2.61e-80 240
MS.gene028920.t1 AT1G69530 54.854 206 91 1 5 210 46 249 2.61e-80 240
MS.gene028920.t1 AT2G03090 52.913 206 95 1 5 210 49 252 6.73e-80 239
MS.gene028920.t1 AT1G69530 55.224 201 88 1 5 205 46 244 2.34e-78 236
MS.gene028920.t1 AT2G28950 51.456 206 100 0 5 210 50 255 1.04e-76 231
MS.gene028920.t1 AT5G39280 53.398 206 92 2 3 208 71 272 9.40e-74 224
MS.gene028920.t1 AT1G26770 52.913 206 95 1 5 210 45 248 3.16e-73 222
MS.gene028920.t1 AT1G26770 52.913 206 95 1 5 210 55 258 5.04e-73 222
MS.gene028920.t1 AT5G39300 52.427 206 94 2 3 208 72 273 9.55e-73 222
MS.gene028920.t1 AT5G39270 52.913 206 93 2 3 208 75 276 2.32e-72 221
MS.gene028920.t1 AT5G39290 52.913 206 93 2 3 208 75 276 4.13e-72 220
MS.gene028920.t1 AT3G29030 49.515 206 95 2 5 210 57 253 4.01e-71 217
MS.gene028920.t1 AT1G20190 48.293 205 101 3 5 206 45 247 1.92e-69 213
MS.gene028920.t1 AT4G01630 48.293 205 102 3 5 206 47 250 5.54e-68 209
MS.gene028920.t1 AT1G62980 46.341 205 108 2 5 208 50 253 2.33e-66 205
MS.gene028920.t1 AT5G39260 47.826 207 99 2 2 208 62 259 1.14e-65 203
MS.gene028920.t1 AT5G39310 47.826 207 103 3 3 208 107 309 1.29e-64 202
MS.gene028920.t1 AT1G69530 47.087 206 77 2 5 210 46 219 3.26e-64 198
MS.gene028920.t1 AT1G69530 54.601 163 72 1 5 167 46 206 3.62e-63 196
MS.gene028920.t1 AT1G20190 47.619 189 94 3 21 206 2 188 8.93e-62 191
MS.gene028920.t1 AT3G15370 47.642 212 99 6 5 210 46 251 1.29e-61 192
MS.gene028920.t1 AT3G15370 47.642 212 99 6 5 210 76 281 4.49e-61 192
MS.gene028920.t1 AT1G12560 44.335 203 110 3 5 206 56 256 3.68e-59 187
MS.gene028920.t1 AT4G28250 28.571 217 128 7 5 208 55 257 4.43e-24 96.3
MS.gene028920.t1 AT1G65680 30.415 217 122 8 5 206 66 268 2.39e-23 94.7
MS.gene028920.t1 AT2G20750 29.817 218 127 8 5 208 59 264 4.37e-22 91.3
MS.gene028920.t1 AT4G28250 28.037 214 127 7 5 208 55 251 1.19e-21 89.7
MS.gene028920.t1 AT1G65681 27.650 217 126 8 5 206 17 217 1.81e-19 83.2
MS.gene028920.t1 AT2G45110 28.241 216 128 9 5 206 52 254 6.82e-19 82.4
MS.gene028920.t1 AT3G60570 27.149 221 133 9 1 208 1 206 2.98e-14 69.3
MS.gene028920.t1 AT3G60570 27.189 217 130 9 5 208 53 254 1.14e-13 68.2
MS.gene028920.t1 AT4G28250 27.564 156 88 5 5 152 55 193 1.04e-11 62.0
MS.gene028920.t1 AT4G28250 33.621 116 55 4 5 112 55 156 1.52e-11 61.6

Find 47 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTCACAAGGTTGATTA+TGG 0.175744 2.3:+10397628 MS.gene028920:CDS
GATTTCTGTCCTCCAAATTA+TGG 0.225295 2.3:+10397784 MS.gene028920:CDS
TATGGACTTTCATCTGATTA+TGG 0.229268 2.3:+10397802 MS.gene028920:CDS
GCTCCTGCAAACTGGCAATT+TGG 0.244244 2.3:+10398643 MS.gene028920:CDS
TCAGATGAAAGTCCATAATT+TGG 0.250351 2.3:-10397796 None:intergenic
ACAGAAGGAGCTTGTGGTTA+TGG 0.312063 2.3:+10397604 MS.gene028920:intron
GGATACCAATGGCAAGGAAT+TGG 0.318465 2.3:+10398524 MS.gene028920:CDS
CAAGTTCTTATTACAAATGT+AGG 0.326793 2.3:+10398451 MS.gene028920:CDS
GATACCAATGGCAAGGAATT+GGG 0.352310 2.3:+10398525 MS.gene028920:CDS
TGTCCAAATTGCCAGTTTGC+AGG 0.359469 2.3:-10398646 None:intergenic
CACATCTTATGGTGCTTGAT+TGG 0.373766 2.3:+10397733 MS.gene028920:CDS
AAAGTGAAGGGAACTAAAAC+TGG 0.381812 2.3:+10398499 MS.gene028920:CDS
CAAGGAATTGGGGACAAAAC+TGG 0.385261 2.3:+10398536 MS.gene028920:CDS
AAAACAACCTCTATCCTTTG+AGG 0.411228 2.3:+10398579 MS.gene028920:CDS
CAATTTGGACAAACATTTGA+AGG 0.422160 2.3:+10398658 MS.gene028920:CDS
ACATTCACAAGGTTGATTAT+GGG 0.445375 2.3:+10397629 MS.gene028920:CDS
GATTATGGGAAATATAGTAC+TGG 0.452620 2.3:+10397643 MS.gene028920:CDS
TGTCCCCAATTCCTTGCCAT+TGG 0.454064 2.3:-10398529 None:intergenic
ACAATGTAGCTCCTGCAAAC+TGG 0.454872 2.3:+10398635 MS.gene028920:CDS
ATATAGTTCCAATTCAATAT+AGG 0.455636 2.3:+10397902 MS.gene028920:CDS
GACATCTCAAAATGCTCACT+TGG 0.480475 2.3:-10397841 None:intergenic
GATGTGTTGATCACATCTTA+TGG 0.481755 2.3:+10397722 MS.gene028920:CDS
AAGTTCTTATTACAAATGTA+GGG 0.493659 2.3:+10398452 MS.gene028920:CDS
TCTTATTACAAATGTAGGGT+TGG 0.510367 2.3:+10398456 MS.gene028920:CDS
AGGGTTAAATGTAAAAGAAC+TGG 0.514896 2.3:+10398388 MS.gene028920:intron
ATTACAAATGTAGGGTTGGA+TGG 0.520180 2.3:+10398460 MS.gene028920:CDS
GATGAAAGTCCATAATTTGG+AGG 0.526023 2.3:-10397793 None:intergenic
TTCAACAAAGGGAGTACTTG+TGG 0.535641 2.3:+10397682 MS.gene028920:CDS
TTTGAGGTGACTATCAAAAG+TGG 0.537884 2.3:+10398595 MS.gene028920:CDS
ATAGTCACCTCAAAGGATAG+AGG 0.543990 2.3:-10398586 None:intergenic
TTTCATCTGATTATGGTGGA+TGG 0.551689 2.3:+10397809 MS.gene028920:CDS
TTGATTACAGAAGGAGCTTG+TGG 0.560639 2.3:+10397598 MS.gene028920:intron
TGAAGGGAACTAAAACTGGA+TGG 0.585046 2.3:+10398503 MS.gene028920:CDS
ATACCAATGGCAAGGAATTG+GGG 0.588690 2.3:+10398526 MS.gene028920:CDS
TAGTTCCAATTCAATATAGG+AGG 0.594932 2.3:+10397905 MS.gene028920:CDS
GGACTTTCATCTGATTATGG+TGG 0.599208 2.3:+10397805 MS.gene028920:CDS
TGTAGGGTTGGATGGTGAAG+TGG 0.599601 2.3:+10398468 MS.gene028920:CDS
GGCTTGAAATTCACAATGAG+TGG 0.606308 2.3:+10398412 MS.gene028920:CDS
GTTAAATGTAAAAGAACTGG+TGG 0.614008 2.3:+10398391 MS.gene028920:CDS
GTAACAGTAACAACTACAGA+AGG 0.615173 2.3:-10397760 None:intergenic
CTGGATGGATACCAATGGCA+AGG 0.617275 2.3:+10398518 MS.gene028920:CDS
TAAAACTGGATGGATACCAA+TGG 0.633872 2.3:+10398513 MS.gene028920:CDS
ATTATGGGAAATATAGTACT+GGG 0.639481 2.3:+10397644 MS.gene028920:CDS
AGTGGTTGCTGTAAAAGTGA+AGG 0.657922 2.3:+10398486 MS.gene028920:CDS
TTTACTACAAGCATGCAACA+AGG 0.663033 2.3:+10396993 None:intergenic
GTGGTTGCTGTAAAAGTGAA+GGG 0.675102 2.3:+10398487 MS.gene028920:CDS
TGGTTATGGAGACATTCACA+AGG 0.691220 2.3:+10397618 MS.gene028920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATGTAAAAATACTT+AGG - chr2.3:10398326-10398345 None:intergenic 10.0%
!! ACATCAAAATTCTTTATATT+GGG + chr2.3:10398228-10398247 MS.gene028920:intron 15.0%
!! AAGTTCTTATTACAAATGTA+GGG + chr2.3:10398452-10398471 MS.gene028920:CDS 20.0%
!! ATATAGTTCCAATTCAATAT+AGG + chr2.3:10397902-10397921 MS.gene028920:CDS 20.0%
!! CATCAAAATTCTTTATATTG+GGG + chr2.3:10398229-10398248 MS.gene028920:intron 20.0%
!! GACATCAAAATTCTTTATAT+TGG + chr2.3:10398227-10398246 MS.gene028920:intron 20.0%
!!! ATGCACTTATAGTTTTAAAT+TGG - chr2.3:10398258-10398277 None:intergenic 20.0%
! AAATATTAGAGCTGTCAAAA+TGG - chr2.3:10397509-10397528 None:intergenic 25.0%
! AATAAGCTAAAAATGGCTTA+TGG - chr2.3:10398005-10398024 None:intergenic 25.0%
! ATTATGGGAAATATAGTACT+GGG + chr2.3:10397644-10397663 MS.gene028920:CDS 25.0%
! CAAGTTCTTATTACAAATGT+AGG + chr2.3:10398451-10398470 MS.gene028920:CDS 25.0%
! CACAAAAGTTTAAGTAAGTT+GGG + chr2.3:10397532-10397551 MS.gene028920:intron 25.0%
! TTACGGAAATAAGCTAAAAA+TGG - chr2.3:10398012-10398031 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+CGG + chr2.3:10397342-10397361 MS.gene028920:intron 25.0%
!! TTTTACCTCCTATATTGAAT+TGG - chr2.3:10397913-10397932 None:intergenic 25.0%
AAACTATCCTAGAGAACTTA+CGG - chr2.3:10398029-10398048 None:intergenic 30.0%
ACATACATCCAAGATAAAGA+TGG + chr2.3:10397057-10397076 MS.gene028920:intron 30.0%
ACCTAGTCTGTGTAAAATTA+TGG + chr2.3:10397456-10397475 MS.gene028920:intron 30.0%
AGGGTTAAATGTAAAAGAAC+TGG + chr2.3:10398388-10398407 MS.gene028920:intron 30.0%
ATATGTCGCCTAATAACAAA+TGG - chr2.3:10397183-10397202 None:intergenic 30.0%
CAATTTGGACAAACATTTGA+AGG + chr2.3:10398658-10398677 MS.gene028920:CDS 30.0%
CACATTGTCAAAACTAAAAC+TGG - chr2.3:10397570-10397589 None:intergenic 30.0%
CCTAGTCTGTGTAAAATTAT+GGG + chr2.3:10397457-10397476 MS.gene028920:intron 30.0%
CTGTTTACTTTATCCAAACA+GGG + chr2.3:10398300-10398319 MS.gene028920:intron 30.0%
GATTATGGGAAATATAGTAC+TGG + chr2.3:10397643-10397662 MS.gene028920:CDS 30.0%
GCACAAAAGTTTAAGTAAGT+TGG + chr2.3:10397531-10397550 MS.gene028920:intron 30.0%
GTTAAATGTAAAAGAACTGG+TGG + chr2.3:10398391-10398410 MS.gene028920:CDS 30.0%
TAGTTCCAATTCAATATAGG+AGG + chr2.3:10397905-10397924 MS.gene028920:CDS 30.0%
TATGGACTTTCATCTGATTA+TGG + chr2.3:10397802-10397821 MS.gene028920:CDS 30.0%
TATGTCGCCTAATAACAAAT+GGG - chr2.3:10397182-10397201 None:intergenic 30.0%
TCAGATGAAAGTCCATAATT+TGG - chr2.3:10397799-10397818 None:intergenic 30.0%
TCTTATTACAAATGTAGGGT+TGG + chr2.3:10398456-10398475 MS.gene028920:CDS 30.0%
! ACATTCACAAGGTTGATTAT+GGG + chr2.3:10397629-10397648 MS.gene028920:CDS 30.0%
! AGCACATTTTTGTTCAACAA+AGG + chr2.3:10397670-10397689 MS.gene028920:CDS 30.0%
! GCACATTTTTGTTCAACAAA+GGG + chr2.3:10397671-10397690 MS.gene028920:CDS 30.0%
! TGCATTTTGCTGCAATATAA+AGG - chr2.3:10398179-10398198 None:intergenic 30.0%
! TGTGTAAAATTATGGGCTAT+GGG + chr2.3:10397464-10397483 MS.gene028920:intron 30.0%
!!! CAGTTTTAGTTTTGACAATG+TGG + chr2.3:10397568-10397587 MS.gene028920:intron 30.0%
AAAAATACTTAGGCCCTGTT+TGG - chr2.3:10398316-10398335 None:intergenic 35.0%
AAAACAACCTCTATCCTTTG+AGG + chr2.3:10398579-10398598 MS.gene028920:CDS 35.0%
AAAGATGGTTCTCTCATTAC+AGG + chr2.3:10397072-10397091 MS.gene028920:intron 35.0%
AAAGTGAAGGGAACTAAAAC+TGG + chr2.3:10398499-10398518 MS.gene028920:CDS 35.0%
ACTACGTAAATGAGCAGAAT+TGG + chr2.3:10397151-10397170 MS.gene028920:intron 35.0%
AGTACAAGCCTAAAACGATT+GGG - chr2.3:10397246-10397265 None:intergenic 35.0%
ATGGCTTATGGATATCTGAT+AGG - chr2.3:10397993-10398012 None:intergenic 35.0%
ATTACAAATGTAGGGTTGGA+TGG + chr2.3:10398460-10398479 MS.gene028920:CDS 35.0%
ATTCTGCTCATTTACGTAGT+AGG - chr2.3:10397151-10397170 None:intergenic 35.0%
CTTATTTCCGTAAGTTCTCT+AGG + chr2.3:10398019-10398038 MS.gene028920:intron 35.0%
CTTCTTACACAGATGAAGAA+TGG + chr2.3:10397019-10397038 MS.gene028920:intron 35.0%
GATGAAAGTCCATAATTTGG+AGG - chr2.3:10397796-10397815 None:intergenic 35.0%
GATTTCTGTCCTCCAAATTA+TGG + chr2.3:10397784-10397803 MS.gene028920:CDS 35.0%
GCTGTTTACTTTATCCAAAC+AGG + chr2.3:10398299-10398318 MS.gene028920:intron 35.0%
GGTTGTGAATTGATTACAGA+AGG + chr2.3:10397589-10397608 MS.gene028920:intron 35.0%
GTAACAGTAACAACTACAGA+AGG - chr2.3:10397763-10397782 None:intergenic 35.0%
TAAAACTGGATGGATACCAA+TGG + chr2.3:10398513-10398532 MS.gene028920:CDS 35.0%
TGAGAGAACCATCTTTATCT+TGG - chr2.3:10397068-10397087 None:intergenic 35.0%
! AGTTTAAGTAAGTTGGGTTC+CGG + chr2.3:10397538-10397557 MS.gene028920:intron 35.0%
! CCCATAATTTTACACAGACT+AGG - chr2.3:10397460-10397479 None:intergenic 35.0%
! CTGTGTAAAATTATGGGCTA+TGG + chr2.3:10397463-10397482 MS.gene028920:intron 35.0%
! GACATTCACAAGGTTGATTA+TGG + chr2.3:10397628-10397647 MS.gene028920:CDS 35.0%
! GATGTGTTGATCACATCTTA+TGG + chr2.3:10397722-10397741 MS.gene028920:CDS 35.0%
! TAAAAAGGCCCAATCGTTTT+AGG + chr2.3:10397235-10397254 MS.gene028920:intron 35.0%
! TAGAGCTGTCAAAATGGATT+AGG - chr2.3:10397503-10397522 None:intergenic 35.0%
! TTTCATCTGATTATGGTGGA+TGG + chr2.3:10397809-10397828 MS.gene028920:CDS 35.0%
! TTTGAGGTGACTATCAAAAG+TGG + chr2.3:10398595-10398614 MS.gene028920:CDS 35.0%
! TTTTCAGATTAACTGTGTCC+AGG - chr2.3:10397404-10397423 None:intergenic 35.0%
!! ACTTTTGATAGTCACCTCAA+AGG - chr2.3:10398596-10398615 None:intergenic 35.0%
AAACTAAAACTGGTGAGTCC+CGG - chr2.3:10397560-10397579 None:intergenic 40.0%
AGTGGTTGCTGTAAAAGTGA+AGG + chr2.3:10398486-10398505 MS.gene028920:CDS 40.0%
ATACCAATGGCAAGGAATTG+GGG + chr2.3:10398526-10398545 MS.gene028920:CDS 40.0%
ATAGTCACCTCAAAGGATAG+AGG - chr2.3:10398589-10398608 None:intergenic 40.0%
CACATCTTATGGTGCTTGAT+TGG + chr2.3:10397733-10397752 MS.gene028920:CDS 40.0%
CAGTACAAGCCTAAAACGAT+TGG - chr2.3:10397247-10397266 None:intergenic 40.0%
GACATCTCAAAATGCTCACT+TGG - chr2.3:10397844-10397863 None:intergenic 40.0%
GATACCAATGGCAAGGAATT+GGG + chr2.3:10398525-10398544 MS.gene028920:CDS 40.0%
GGACTTTCATCTGATTATGG+TGG + chr2.3:10397805-10397824 MS.gene028920:CDS 40.0%
GGCTTGAAATTCACAATGAG+TGG + chr2.3:10398412-10398431 MS.gene028920:CDS 40.0%
GTAAATGAGCAGAATTGGCT+TGG + chr2.3:10397156-10397175 MS.gene028920:intron 40.0%
GTGGTTGCTGTAAAAGTGAA+GGG + chr2.3:10398487-10398506 MS.gene028920:CDS 40.0%
TGAAGGGAACTAAAACTGGA+TGG + chr2.3:10398503-10398522 MS.gene028920:CDS 40.0%
TGGTTATGGAGACATTCACA+AGG + chr2.3:10397618-10397637 MS.gene028920:CDS 40.0%
TGTACTGTGAAGCACGAATA+CGG + chr2.3:10397260-10397279 MS.gene028920:intron 40.0%
TTAAATTGCAGTTGCAGTCG+TGG + chr2.3:10398141-10398160 MS.gene028920:intron 40.0%
TTGATTACAGAAGGAGCTTG+TGG + chr2.3:10397598-10397617 MS.gene028920:intron 40.0%
! AACGATTGGGCCTTTTTATC+CGG - chr2.3:10397233-10397252 None:intergenic 40.0%
! GTTTAAGTAAGTTGGGTTCC+GGG + chr2.3:10397539-10397558 MS.gene028920:intron 40.0%
!! AAAAGTGTCCGTGGTTCATA+GGG + chr2.3:10397420-10397439 MS.gene028920:intron 40.0%
!! GTTAATCTGAAAAGTGTCCG+TGG + chr2.3:10397411-10397430 MS.gene028920:intron 40.0%
!! TATATGTGTCGGTGTCATGT+TGG + chr2.3:10397353-10397372 MS.gene028920:intron 40.0%
!! TCAAAATGGATTAGGCCAGA+TGG - chr2.3:10397495-10397514 None:intergenic 40.0%
!! TTCAACAAAGGGAGTACTTG+TGG + chr2.3:10397682-10397701 MS.gene028920:CDS 40.0%
AACACAAGCCCTATGAACCA+CGG - chr2.3:10397431-10397450 None:intergenic 45.0%
ACAATGTAGCTCCTGCAAAC+TGG + chr2.3:10398635-10398654 MS.gene028920:CDS 45.0%
ACAGAAGGAGCTTGTGGTTA+TGG + chr2.3:10397604-10397623 MS.gene028920:intron 45.0%
ATGCGGTTGCAATGCTGTTA+AGG + chr2.3:10398203-10398222 MS.gene028920:intron 45.0%
CAAGGAATTGGGGACAAAAC+TGG + chr2.3:10398536-10398555 MS.gene028920:CDS 45.0%
GATTAACTGTGTCCAGGTGT+CGG - chr2.3:10397398-10397417 None:intergenic 45.0%
GCAGCAAAATGCAACCTATG+CGG + chr2.3:10398186-10398205 MS.gene028920:intron 45.0%
GGATACCAATGGCAAGGAAT+TGG + chr2.3:10398524-10398543 MS.gene028920:CDS 45.0%
TAACAGCATTGCAACCGCAT+AGG - chr2.3:10398203-10398222 None:intergenic 45.0%
TAGGACACACTAGACCAAAG+TGG - chr2.3:10397132-10397151 None:intergenic 45.0%
TGTCCAAATTGCCAGTTTGC+AGG - chr2.3:10398649-10398668 None:intergenic 45.0%
!! AATGGATTAGGCCAGATGGA+CGG - chr2.3:10397491-10397510 None:intergenic 45.0%
!! GAAAAGTGTCCGTGGTTCAT+AGG + chr2.3:10397419-10397438 MS.gene028920:intron 45.0%
!! GGCTTGGCCCATTTGTTATT+AGG + chr2.3:10397172-10397191 MS.gene028920:intron 45.0%
AGCTGTCAAATGAGCCGATC+CGG + chr2.3:10397105-10397124 MS.gene028920:intron 50.0%
CACACTAGACCAAAGTGGAC+CGG - chr2.3:10397127-10397146 None:intergenic 50.0%
CAGCATGTTAGTGTCGTGTC+TGG - chr2.3:10397295-10397314 None:intergenic 50.0%
CTACTGTGGGCCGGATAAAA+AGG + chr2.3:10397220-10397239 MS.gene028920:intron 50.0%
CTGGATGGATACCAATGGCA+AGG + chr2.3:10398518-10398537 MS.gene028920:CDS 50.0%
GCTCCTGCAAACTGGCAATT+TGG + chr2.3:10398643-10398662 MS.gene028920:CDS 50.0%
GCTGATGTGAGAGTTGTGCA+GGG + chr2.3:10398369-10398388 MS.gene028920:intron 50.0%
TAGACCAAAGTGGACCGGAT+CGG - chr2.3:10397122-10397141 None:intergenic 50.0%
TAGCCAAGCCCAACTACTGT+GGG + chr2.3:10397207-10397226 MS.gene028920:intron 50.0%
TGCTGATGTGAGAGTTGTGC+AGG + chr2.3:10398368-10398387 MS.gene028920:intron 50.0%
TGTAGGGTTGGATGGTGAAG+TGG + chr2.3:10398468-10398487 MS.gene028920:CDS 50.0%
TGTCCCCAATTCCTTGCCAT+TGG - chr2.3:10398532-10398551 None:intergenic 50.0%
TTAGCCAAGCCCAACTACTG+TGG + chr2.3:10397206-10397225 MS.gene028920:intron 50.0%
TTATCCGGCCCACAGTAGTT+GGG - chr2.3:10397218-10397237 None:intergenic 50.0%
TTTATCCGGCCCACAGTAGT+TGG - chr2.3:10397219-10397238 None:intergenic 50.0%
!! TGTCGGTGTCATGTTGGTGT+GGG + chr2.3:10397359-10397378 MS.gene028920:intron 50.0%
!! GTGTCGGTGTCATGTTGGTG+TGG + chr2.3:10397358-10397377 MS.gene028920:intron 55.0%
CAAGCCCAACTACTGTGGGC+CGG + chr2.3:10397211-10397230 MS.gene028920:intron 60.0%
CACAACACGTGTCCGACACC+TGG + chr2.3:10397383-10397402 MS.gene028920:intron 60.0%
TGAGCCGATCCGGTCCACTT+TGG + chr2.3:10397115-10397134 MS.gene028920:intron 60.0%
CGGCCCACAGTAGTTGGGCT+TGG - chr2.3:10397213-10397232 None:intergenic 65.0%
GGGCTATGGGTCCGTCCATC+TGG + chr2.3:10397477-10397496 MS.gene028920:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 10397005 10398693 10397005 ID=MS.gene028920
chr2.3 mRNA 10397005 10398693 10397005 ID=MS.gene028920.t1;Parent=MS.gene028920
chr2.3 exon 10397005 10397014 10397005 ID=MS.gene028920.t1.exon1;Parent=MS.gene028920.t1
chr2.3 CDS 10397005 10397014 10397005 ID=cds.MS.gene028920.t1;Parent=MS.gene028920.t1
chr2.3 exon 10397608 10397926 10397608 ID=MS.gene028920.t1.exon2;Parent=MS.gene028920.t1
chr2.3 CDS 10397608 10397926 10397608 ID=cds.MS.gene028920.t1;Parent=MS.gene028920.t1
chr2.3 exon 10398390 10398693 10398390 ID=MS.gene028920.t1.exon3;Parent=MS.gene028920.t1
chr2.3 CDS 10398390 10398693 10398390 ID=cds.MS.gene028920.t1;Parent=MS.gene028920.t1
Gene Sequence

>MS.gene028920

ATGCAACAAGGTTGCTTCTTACACAGATGAAGAATGGAAGTCTGCAACTGCAACATACATCCAAGATAAAGATGGTTCTCTCATTACAGGTATTTCTTAGAGCTGTCAAATGAGCCGATCCGGTCCACTTTGGTCTAGTGTGTCCTACTACGTAAATGAGCAGAATTGGCTTGGCCCATTTGTTATTAGGCGACATATTCTTTAGCCAAGCCCAACTACTGTGGGCCGGATAAAAAGGCCCAATCGTTTTAGGCTTGTACTGTGAAGCACGAATACGGACACAGACACCAGACACGACACTAACATGCTGACATTGTTATTTGAGAAAATCACAAAATTCAGTGTAATTATATGTGTCGGTGTCATGTTGGTGTGGGACACAACACGTGTCCGACACCTGGACACAGTTAATCTGAAAAGTGTCCGTGGTTCATAGGGCTTGTGTTTTACAACCTAGTCTGTGTAAAATTATGGGCTATGGGTCCGTCCATCTGGCCTAATCCATTTTGACAGCTCTAATATTTTTGCACAAAAGTTTAAGTAAGTTGGGTTCCGGGACTCACCAGTTTTAGTTTTGACAATGTGGTTGTGAATTGATTACAGAAGGAGCTTGTGGTTATGGAGACATTCACAAGGTTGATTATGGGAAATATAGTACTGGGCTAAGCACATTTTTGTTCAACAAAGGGAGTACTTGTGGTGCTTGTTATGAGATTAGATGTGTTGATCACATCTTATGGTGCTTGATTGGAAGTCCTTCTGTAGTTGTTACTGTTACAGATTTCTGTCCTCCAAATTATGGACTTTCATCTGATTATGGTGGATGGTGCAATTTTCCAAGTGAGCATTTTGAGATGTCAGAAGCTGCGTTCGCTGAAATTGCTAAGAGAAAATCTGATATAGTTCCAATTCAATATAGGAGGTAAAACTAAAATGTTTTAATGAGACATATTGATTGACTATTAGAGAGAGCTTATAGAAACAACCTATCAGATATCCATAAGCCATTTTTAGCTTATTTCCGTAAGTTCTCTAGGATAGTTTATAAAACAACTTATAGCTTATGAAAACAATATCACTTTATTTTATTTAACGCTATAGAAATAGCTTATAAGCACTTATATGATAAAAATATTTTAAATTGCAGTTGCAGTCGTGGTTACGCTGCTAACCTTTATATTGCAGCAAAATGCAACCTATGCGGTTGCAATGCTGTTAAGGAGACATCAAAATTCTTTATATTGGGGCTGCCAATTTAAAACTATAAGTGCATATGTTATAAGTGCTTAATAAAGCTGTTTACTTTATCCAAACAGGGCCTAAGTATTTTTACATAAAAAAAAAATACAAAGTATTTTTTTTTTGCTGATGTGAGAGTTGTGCAGGGTTAAATGTAAAAGAACTGGTGGCTTGAAATTCACAATGAGTGGAAGTGATTATTTCTATCAAGTTCTTATTACAAATGTAGGGTTGGATGGTGAAGTGGTTGCTGTAAAAGTGAAGGGAACTAAAACTGGATGGATACCAATGGCAAGGAATTGGGGACAAAACTGGCATTGCAATGTGAATCTTCAAAAACAACCTCTATCCTTTGAGGTGACTATCAAAAGTGGAAAAACAATCACATCTTACAATGTAGCTCCTGCAAACTGGCAATTTGGACAAACATTTGAAGGTAAACAATTCTAG
Protein sequence

>MS.gene028920.t1

MQQEGACGYGDIHKVDYGKYSTGLSTFLFNKGSTCGACYEIRCVDHILWCLIGSPSVVVTVTDFCPPNYGLSSDYGGWCNFPSEHFEMSEAAFAEIAKRKSDIVPIQYRRVKCKRTGGLKFTMSGSDYFYQVLITNVGLDGEVVAVKVKGTKTGWIPMARNWGQNWHCNVNLQKQPLSFEVTIKSGKTITSYNVAPANWQFGQTFEGKQF