AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64672

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64672.t1 MTR_5g079950 98.842 259 3 0 1 259 1 259 0.0 528
MS.gene64672.t1 MTR_2g097030 84.646 254 39 0 6 259 7 260 5.66e-167 462
MS.gene64672.t1 MTR_7g061720 82.239 259 45 1 1 259 1 258 6.35e-163 452
MS.gene64672.t1 MTR_4g063975 81.349 252 43 1 12 259 7 258 5.66e-151 421
MS.gene64672.t1 MTR_3g094060 73.016 252 61 2 6 257 9 253 1.37e-134 380
MS.gene64672.t1 MTR_3g094040 72.619 252 62 2 6 257 9 253 2.25e-133 377
MS.gene64672.t1 MTR_5g041700 74.672 229 56 1 30 258 22 248 1.79e-128 364
MS.gene64672.t1 MTR_4g081950 71.138 246 68 2 10 254 37 280 3.09e-128 365
MS.gene64672.t1 MTR_5g075320 66.667 258 78 3 1 257 1 251 5.61e-124 353
MS.gene64672.t1 MTR_3g466790 69.076 249 74 2 10 257 8 254 1.10e-122 350
MS.gene64672.t1 MTR_3g435430 74.222 225 56 1 33 257 25 247 1.39e-122 349
MS.gene64672.t1 MTR_3g466760 66.926 257 82 2 1 257 7 260 1.74e-122 349
MS.gene64672.t1 MTR_7g011060 69.469 226 59 2 32 257 25 240 5.16e-116 332
MS.gene64672.t1 MTR_1g085460 65.289 242 76 4 17 255 18 254 5.52e-111 320
MS.gene64672.t1 MTR_1g026020 64.502 231 79 2 27 255 23 252 3.96e-109 315
MS.gene64672.t1 MTR_7g111010 60.000 255 92 5 1 252 1 248 1.26e-106 309
MS.gene64672.t1 MTR_4g124340 58.091 241 98 2 17 256 45 283 3.37e-106 309
MS.gene64672.t1 MTR_7g110990 64.732 224 75 3 32 252 11 233 1.65e-104 303
MS.gene64672.t1 MTR_6g012520 64.777 247 76 3 12 257 6 242 5.56e-103 299
MS.gene64672.t1 MTR_7g013150 56.000 250 101 2 6 255 10 250 1.18e-100 294
MS.gene64672.t1 MTR_8g464350 56.846 241 99 2 12 252 13 248 6.79e-99 289
MS.gene64672.t1 MTR_8g058990 55.967 243 102 2 12 254 12 249 1.28e-98 288
MS.gene64672.t1 MTR_7g013120 56.680 247 100 4 10 255 10 250 2.11e-98 288
MS.gene64672.t1 MTR_7g013140 54.331 254 109 2 1 254 1 247 3.50e-97 285
MS.gene64672.t1 MTR_5g011210 52.823 248 114 3 13 258 17 263 4.55e-94 277
MS.gene64672.t1 MTR_4g102450 53.725 255 113 4 8 258 9 262 7.20e-94 277
MS.gene64672.t1 MTR_5g076950 56.444 225 97 1 33 257 41 264 8.69e-92 272
MS.gene64672.t1 MTR_0040s0140 48.249 257 130 2 1 257 3 256 1.49e-88 263
MS.gene64672.t1 MTR_2g090255 46.825 252 131 1 6 257 4 252 1.43e-85 255
MS.gene64672.t1 MTR_3g064510 52.991 234 101 5 33 258 53 285 6.97e-80 242
MS.gene64672.t1 MTR_0008s0120 42.188 256 85 4 1 254 1 195 1.19e-58 185
MS.gene64672.t1 MTR_6g012500 54.167 120 49 1 144 257 161 280 2.76e-39 138
MS.gene64672.t1 MTR_2g090270 28.253 269 165 12 1 255 1 255 1.91e-24 98.6
MS.gene64672.t1 MTR_0122s0020 32.766 235 132 11 33 255 41 261 1.31e-23 96.7
MS.gene64672.t1 MTR_2g090265 27.341 267 168 11 1 255 1 253 1.33e-22 93.6
MS.gene64672.t1 MTR_4g028640 29.661 236 131 11 33 252 42 258 4.13e-20 87.0
MS.gene64672.t1 MTR_0118s0070 30.303 231 131 13 38 252 53 269 2.40e-19 85.1
MS.gene64672.t1 MTR_0809s0010 28.814 236 134 12 33 252 47 264 4.29e-19 84.3
MS.gene64672.t1 MTR_1g085365 62.500 56 21 0 202 257 4 59 1.39e-15 69.7
MS.gene64672.t1 MTR_4g099370 24.419 258 166 10 3 252 8 244 4.68e-15 73.2
MS.gene64672.t1 MTR_4g075790 27.556 225 128 10 44 252 32 237 7.67e-14 69.7
MS.gene64672.t1 MTR_0122s0020 33.714 175 91 10 33 196 41 201 2.68e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64672.t1 AT2G39700 83.594 256 41 1 4 259 3 257 1.66e-166 461
MS.gene64672.t1 AT3G55500 81.853 259 46 1 1 259 3 260 2.39e-161 448
MS.gene64672.t1 AT2G37640 83.333 246 41 0 14 259 17 262 1.97e-159 443
MS.gene64672.t1 AT2G28950 83.665 251 41 0 9 259 7 257 8.80e-158 439
MS.gene64672.t1 AT5G02260 78.740 254 51 1 9 259 5 258 4.67e-155 432
MS.gene64672.t1 AT2G37640 84.286 210 33 0 50 259 28 237 1.39e-136 384
MS.gene64672.t1 AT1G69530 68.800 250 76 1 9 258 3 250 3.08e-125 356
MS.gene64672.t1 AT1G69530 68.800 250 76 1 9 258 3 250 3.08e-125 356
MS.gene64672.t1 AT1G69530 69.880 249 71 3 10 258 6 250 5.59e-124 354
MS.gene64672.t1 AT2G03090 66.409 259 78 3 1 258 3 253 6.80e-124 353
MS.gene64672.t1 AT5G05290 67.315 257 79 3 4 257 1 255 4.39e-123 351
MS.gene64672.t1 AT5G56320 67.611 247 76 2 13 259 11 253 6.88e-123 350
MS.gene64672.t1 AT5G56320 67.611 247 76 2 13 259 11 253 6.88e-123 350
MS.gene64672.t1 AT5G56320 67.611 247 76 2 13 259 11 253 6.74e-122 350
MS.gene64672.t1 AT2G40610 66.406 256 75 3 3 257 8 253 5.09e-120 343
MS.gene64672.t1 AT1G26770 70.040 247 71 2 12 258 6 249 2.82e-119 341
MS.gene64672.t1 AT1G26770 70.040 247 71 2 12 258 16 259 2.87e-119 341
MS.gene64672.t1 AT4G01630 62.000 250 91 3 6 252 1 249 6.29e-111 320
MS.gene64672.t1 AT3G29030 67.699 226 64 2 33 258 38 254 3.04e-110 318
MS.gene64672.t1 AT1G69530 62.400 250 62 2 9 258 3 220 2.21e-108 312
MS.gene64672.t1 AT1G69530 63.454 249 57 4 10 258 6 220 2.64e-107 310
MS.gene64672.t1 AT1G20190 63.470 219 77 2 37 253 30 247 7.37e-101 294
MS.gene64672.t1 AT5G39270 59.193 223 87 2 33 255 58 276 1.77e-98 289
MS.gene64672.t1 AT5G39290 58.744 223 88 2 33 255 58 276 6.57e-98 288
MS.gene64672.t1 AT1G62980 55.645 248 103 3 9 255 12 253 3.31e-96 283
MS.gene64672.t1 AT5G39280 56.696 224 93 2 32 255 53 272 4.11e-94 278
MS.gene64672.t1 AT5G39300 56.250 224 94 2 32 255 54 273 2.26e-93 276
MS.gene64672.t1 AT1G12560 53.175 252 114 4 9 258 13 262 2.37e-93 276
MS.gene64672.t1 AT3G03220 54.425 226 102 1 33 258 40 264 2.98e-88 263
MS.gene64672.t1 AT5G39310 54.018 224 98 3 33 255 90 309 2.19e-87 262
MS.gene64672.t1 AT1G20190 59.574 188 73 2 68 253 2 188 9.56e-80 239
MS.gene64672.t1 AT5G39260 50.394 254 111 5 6 255 17 259 4.91e-79 239
MS.gene64672.t1 AT3G15370 48.047 256 120 7 4 255 1 247 7.88e-79 238
MS.gene64672.t1 AT4G38210 46.371 248 131 1 13 258 8 255 7.83e-78 236
MS.gene64672.t1 AT3G15370 43.007 286 120 8 4 255 1 277 2.22e-72 223
MS.gene64672.t1 AT2G20750 28.889 270 159 11 6 255 8 264 7.51e-24 97.4
MS.gene64672.t1 AT4G28250 28.409 264 161 11 6 255 8 257 5.91e-23 94.7
MS.gene64672.t1 AT1G65680 30.638 235 134 11 33 252 47 267 3.82e-22 92.8
MS.gene64672.t1 AT4G28250 27.757 263 158 11 6 255 8 251 5.40e-20 86.7
MS.gene64672.t1 AT2G45110 29.707 239 127 11 35 252 35 253 4.09e-19 84.3
MS.gene64672.t1 AT1G65681 28.767 219 129 9 47 252 12 216 1.86e-18 82.0
MS.gene64672.t1 AT4G17030 26.800 250 160 9 13 252 7 243 2.82e-16 76.3
MS.gene64672.t1 AT3G60570 27.068 266 163 10 10 259 9 259 5.69e-16 75.9
MS.gene64672.t1 AT3G45970 25.352 213 137 9 51 252 14 215 6.47e-15 72.4
MS.gene64672.t1 AT2G20750 27.536 207 123 7 6 196 8 203 3.59e-14 70.1
MS.gene64672.t1 AT4G28250 28.780 205 116 9 6 199 8 193 2.17e-13 67.8
MS.gene64672.t1 AT4G28250 29.814 161 90 6 6 157 8 154 4.86e-13 66.6
MS.gene64672.t1 AT3G45970 24.519 208 135 9 56 252 46 242 2.92e-12 65.5
MS.gene64672.t1 AT3G45960 26.316 209 129 11 56 252 46 241 1.07e-11 63.9

Find 74 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATATTGTTCCCTCTAAT+TGG 0.218483 5.2:-67950456 MS.gene64672:CDS
TCACTTGGTTGAGCAAAATT+TGG 0.226173 5.2:+67951589 None:intergenic
GTTCCCTCTAATTGGCAATT+TGG 0.258104 5.2:-67950448 MS.gene64672:CDS
TTGGCAATCAAATTCTGTTT+TGG 0.280999 5.2:-67950536 MS.gene64672:CDS
ATAAACGTACTTCAACTTCT+TGG 0.285149 5.2:-67950477 MS.gene64672:CDS
ACCAATATTGAAGGACTTCC+AGG 0.314188 5.2:+67951634 None:intergenic
TTTGCTCAACCAAGTGATAA+TGG 0.320638 5.2:-67951583 MS.gene64672:CDS
CCCTGGAAGTCCTTCAATAT+TGG 0.339675 5.2:-67951635 MS.gene64672:CDS
GGATGAGTATGAGTCGTAAC+TGG 0.344835 5.2:-67950567 MS.gene64672:CDS
TTGACCAAATTGCCAATTAG+AGG 0.346926 5.2:+67950444 None:intergenic
TTAGGAGGAGCATGTGGATA+TGG 0.347554 5.2:-67951781 MS.gene64672:intron
GTTCTAATCACCAACGTTGC+AGG 0.349710 5.2:-67950637 MS.gene64672:CDS
ATAGTGAAGACTAGTGTTAA+AGG 0.372536 5.2:-67950604 MS.gene64672:CDS
AAGGGCTAAGAAGGTGAAAA+TGG 0.373363 5.2:+67952080 None:intergenic
GGCGTCGCTGCCGCCGTAGA+AGG 0.408061 5.2:+67951987 None:intergenic
GGTGTAGACACCGGGGAGTC+TGG 0.415380 5.2:+67952038 None:intergenic
AGTGAGGAGAAGGGCTAAGA+AGG 0.427838 5.2:+67952071 None:intergenic
CAATTTGGTCAAACTTTCAC+TGG 0.428540 5.2:-67950433 MS.gene64672:CDS
AATTTGTATAGTCAAGGTTA+TGG 0.433320 5.2:-67951757 MS.gene64672:CDS
GTAGCAGTTACCAATATTGA+AGG 0.440044 5.2:+67951625 None:intergenic
AGTTACCTGCGGTAAGAAAC+AGG 0.447956 5.2:+67951475 None:intergenic
CACCATCCTCCATTATCACT+TGG 0.454289 5.2:+67951574 None:intergenic
ACCGCTCACGCCACCTTCTA+CGG 0.458135 5.2:-67952000 MS.gene64672:CDS
CGGCTTCCGTTACTTCAACT+TGG 0.462141 5.2:-67950659 MS.gene64672:CDS
GACACCGGGGAGTCTGGCTT+CGG 0.467921 5.2:+67952044 None:intergenic
ATCACCAACGTTGCAGGTGC+AGG 0.472734 5.2:-67950631 MS.gene64672:CDS
GTGGCACCAACTAGGATCAT+TGG 0.475998 5.2:+67951657 None:intergenic
CTTGGTTGAGCAAAATTTGG+TGG 0.486783 5.2:+67951592 None:intergenic
ATCACCTGCACCTGCAACGT+TGG 0.490975 5.2:+67950627 None:intergenic
AGCGGTTTGCCATGCTCCGC+CGG 0.491165 5.2:+67952017 None:intergenic
TACTAACTAACCCATTGTTC+CGG 0.491667 5.2:+67951963 None:intergenic
AGTGTTCCAATGATCCTAGT+TGG 0.492135 5.2:-67951663 MS.gene64672:CDS
TACGGCGGCAGCGACGCCTC+CGG 0.495150 5.2:-67951982 MS.gene64672:CDS
AGTTGAAGTACGTTTATCAC+TGG 0.500062 5.2:+67950483 None:intergenic
CAGCGACGCCTCCGGAACAA+TGG 0.502237 5.2:-67951974 MS.gene64672:CDS
AGCGACGCCTCCGGAACAAT+GGG 0.505728 5.2:-67951973 MS.gene64672:intron
TTCAACAACGGTTTAAGTTG+TGG 0.514739 5.2:-67951703 MS.gene64672:CDS
TTGTTCCTGTTTCTTACCGC+AGG 0.518212 5.2:-67951480 MS.gene64672:intron
CTTCGGTTGAAGTGAGGAGA+AGG 0.527312 5.2:+67952061 None:intergenic
GCTCCGCCGGTGTAGACACC+GGG 0.534852 5.2:+67952030 None:intergenic
AAAATTGCTCAATATCGTGC+TGG 0.536520 5.2:-67951505 MS.gene64672:CDS
TGCTCCGCCGGTGTAGACAC+CGG 0.538847 5.2:+67952029 None:intergenic
GCAAGATCAAAGTGTGGTCG+TGG 0.539841 5.2:+67951544 None:intergenic
TGACCAAATTGCCAATTAGA+GGG 0.540758 5.2:+67950445 None:intergenic
TATGGAAATTTGTATAGTCA+AGG 0.544667 5.2:-67951763 MS.gene64672:CDS
CTTCCAGGGTGGCACCAACT+AGG 0.546110 5.2:+67951649 None:intergenic
GTCGCTGCCGCCGTAGAAGG+TGG 0.555378 5.2:+67951990 None:intergenic
GATGAGTATGAGTCGTAACT+GGG 0.556251 5.2:-67950566 MS.gene64672:CDS
GCCGTAGAAGGTGGCGTGAG+CGG 0.563764 5.2:+67951999 None:intergenic
GATCCTAGTTGGTGCCACCC+TGG 0.564618 5.2:-67951652 MS.gene64672:CDS
GTGTCTACACCGGCGGAGCA+TGG 0.565072 5.2:-67952026 MS.gene64672:CDS
GGAATAAGATACACAATCAA+CGG 0.582244 5.2:-67950679 MS.gene64672:CDS
TCAACCGAAGCCAGACTCCC+CGG 0.594710 5.2:-67952048 MS.gene64672:CDS
GATCAAAGTGTGGTCGTGGA+GGG 0.601508 5.2:+67951548 None:intergenic
TTAGAACCAAGTTGAAGTAA+CGG 0.614961 5.2:+67950653 None:intergenic
AGATCAAAGTGTGGTCGTGG+AGG 0.616640 5.2:+67951547 None:intergenic
AGGGTACCATGCAGAAAACA+AGG 0.617610 5.2:-67950703 MS.gene64672:CDS
GTCTGGCTTCGGTTGAAGTG+AGG 0.619944 5.2:+67952055 None:intergenic
AGCACAGCATTATTCAACAA+CGG 0.627433 5.2:-67951715 MS.gene64672:CDS
CCAATATTGAAGGACTTCCA+GGG 0.631547 5.2:+67951635 None:intergenic
GCTCACGCCACCTTCTACGG+CGG 0.631792 5.2:-67951997 MS.gene64672:CDS
TTCGGTTGAAGTGAGGAGAA+GGG 0.636772 5.2:+67952062 None:intergenic
AGACTCCCCGGTGTCTACAC+CGG 0.637890 5.2:-67952036 MS.gene64672:CDS
AACCAAGTGATAATGGAGGA+TGG 0.639235 5.2:-67951576 MS.gene64672:CDS
GGCTAAGAAGGTGAAAATGG+TGG 0.650038 5.2:+67952083 None:intergenic
CTCCCCGGTGTCTACACCGG+CGG 0.653439 5.2:-67952033 MS.gene64672:CDS
TAACTAACCCATTGTTCCGG+AGG 0.665327 5.2:+67951966 None:intergenic
GCTCAACCAAGTGATAATGG+AGG 0.668747 5.2:-67951580 MS.gene64672:CDS
TGAGTATGAGTCGTAACTGG+GGG 0.680229 5.2:-67950564 MS.gene64672:CDS
ATGAGTATGAGTCGTAACTG+GGG 0.683363 5.2:-67950565 MS.gene64672:CDS
GGCATAGCAAGATCAAAGTG+TGG 0.696702 5.2:+67951538 None:intergenic
CTCCGCCGGTGTAGACACCG+GGG 0.749196 5.2:+67952031 None:intergenic
GTACCATGCAGAAAACAAGG+AGG 0.788666 5.2:-67950700 MS.gene64672:CDS
ATATTGAAGGACTTCCAGGG+TGG 0.792160 5.2:+67951638 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAGAAAATGAAATT+TGG + chr5.2:67951089-67951108 None:intergenic 10.0%
!! GAAAATATAATATTTATACA+AGG + chr5.2:67951178-67951197 None:intergenic 10.0%
!!! TTTTATAATTAGTACTATTA+TGG - chr5.2:67951239-67951258 MS.gene64672:intron 10.0%
!!! TTTTTTGTTATATTTGTAAA+TGG + chr5.2:67951399-67951418 None:intergenic 10.0%
!! AAAATAAAAAGAAACTAAAG+AGG + chr5.2:67951223-67951242 None:intergenic 15.0%
!! ACAAAAAATAAAGAAAATTG+CGG + chr5.2:67950606-67950625 None:intergenic 15.0%
!! ATAATAAACACAAACAAATT+AGG + chr5.2:67951120-67951139 None:intergenic 15.0%
!!! ATGGTCTTATTTTTTTTTAA+AGG + chr5.2:67951380-67951399 None:intergenic 15.0%
!!! TTAAATTTTGGTTACATTTT+AGG - chr5.2:67950717-67950736 MS.gene64672:intron 15.0%
!! GTAATAAAACACAACATAAA+GGG + chr5.2:67951746-67951765 None:intergenic 20.0%
!! TCAATATTGTTAGATTGAAA+TGG - chr5.2:67951580-67951599 MS.gene64672:CDS 20.0%
!! TGTAATAAAACACAACATAA+AGG + chr5.2:67951747-67951766 None:intergenic 20.0%
!!! CACTTCATGAAATTTTTATA+TGG + chr5.2:67951291-67951310 None:intergenic 20.0%
!!! TTTGTGCTAATGTTAAATTT+TGG - chr5.2:67950705-67950724 MS.gene64672:intron 20.0%
! AATTTGTATAGTCAAGGTTA+TGG - chr5.2:67950759-67950778 MS.gene64672:intron 25.0%
! CATGGGAAAAAATGTAAAAA+AGG + chr5.2:67951200-67951219 None:intergenic 25.0%
! TATGGAAATTTGTATAGTCA+AGG - chr5.2:67950753-67950772 MS.gene64672:intron 25.0%
!!! AATTTTGGTTACATTTTAGG+AGG - chr5.2:67950720-67950739 MS.gene64672:intron 25.0%
AAAAAGAAACTAAAGAGGCA+TGG + chr5.2:67951218-67951237 None:intergenic 30.0%
AAATAAAGAAAATTGCGGCA+TGG + chr5.2:67950601-67950620 None:intergenic 30.0%
AGTGTTAAAGGTTCAAAAAC+TGG - chr5.2:67951924-67951943 MS.gene64672:intron 30.0%
ATAAACGTACTTCAACTTCT+TGG - chr5.2:67952039-67952058 MS.gene64672:CDS 30.0%
ATAGTGAAGACTAGTGTTAA+AGG - chr5.2:67951912-67951931 MS.gene64672:intron 30.0%
ATTTCATGAAGTGTGATTGA+AGG - chr5.2:67951298-67951317 MS.gene64672:intron 30.0%
GGAATAAGATACACAATCAA+CGG - chr5.2:67951837-67951856 MS.gene64672:intron 30.0%
TTAAAGGTTCAAAAACTGGT+TGG - chr5.2:67951928-67951947 MS.gene64672:intron 30.0%
TTGAAATGGTTGATCTAAAC+CGG - chr5.2:67951594-67951613 MS.gene64672:CDS 30.0%
! AAAAGAAACTAAAGAGGCAT+GGG + chr5.2:67951217-67951236 None:intergenic 30.0%
! TGGTCAATCACTTTCTTTTA+GGG - chr5.2:67952004-67952023 MS.gene64672:CDS 30.0%
! TTAGAACCAAGTTGAAGTAA+CGG + chr5.2:67951866-67951885 None:intergenic 30.0%
! TTGGCAATCAAATTCTGTTT+TGG - chr5.2:67951980-67951999 MS.gene64672:CDS 30.0%
! TTGGTCAATCACTTTCTTTT+AGG - chr5.2:67952003-67952022 MS.gene64672:CDS 30.0%
!!! CAATCAAATTCTGTTTTGGT+TGG - chr5.2:67951984-67952003 MS.gene64672:CDS 30.0%
AAAATTGCTCAATATCGTGC+TGG - chr5.2:67951011-67951030 MS.gene64672:intron 35.0%
ACTAAAGACATCATGTACGA+AGG - chr5.2:67951472-67951491 MS.gene64672:intron 35.0%
AGCACAGCATTATTCAACAA+CGG - chr5.2:67950801-67950820 MS.gene64672:intron 35.0%
AGTTGAAGTACGTTTATCAC+TGG + chr5.2:67952036-67952055 None:intergenic 35.0%
CAATTTGGTCAAACTTTCAC+TGG - chr5.2:67952083-67952102 MS.gene64672:CDS 35.0%
GGAATATTGTTCCCTCTAAT+TGG - chr5.2:67952060-67952079 MS.gene64672:CDS 35.0%
GTACTAGTATAGTACAAGAG+TGG + chr5.2:67951702-67951721 None:intergenic 35.0%
GTAGCAGTTACCAATATTGA+AGG + chr5.2:67950894-67950913 None:intergenic 35.0%
GTTTGTCACAAAACTTGAAC+CGG + chr5.2:67951616-67951635 None:intergenic 35.0%
TAAATATGCGGCAAAATGAC+TGG + chr5.2:67951638-67951657 None:intergenic 35.0%
TACTAACTAACCCATTGTTC+CGG + chr5.2:67950556-67950575 None:intergenic 35.0%
TCACTTGGTTGAGCAAAATT+TGG + chr5.2:67950930-67950949 None:intergenic 35.0%
TCGTGAGTAGTGTAAATATG+CGG + chr5.2:67951650-67951669 None:intergenic 35.0%
TGACCAAATTGCCAATTAGA+GGG + chr5.2:67952074-67952093 None:intergenic 35.0%
TGTCCTTTGATATGCATGTA+GGG - chr5.2:67951794-67951813 MS.gene64672:intron 35.0%
TTGACCAAATTGCCAATTAG+AGG + chr5.2:67952075-67952094 None:intergenic 35.0%
TTTGCTCAACCAAGTGATAA+TGG - chr5.2:67950933-67950952 MS.gene64672:intron 35.0%
! CACGATATTGAGCAATTTTG+AGG + chr5.2:67951010-67951029 None:intergenic 35.0%
!! TGAGCAATTTTGAGGAACAT+AGG + chr5.2:67951002-67951021 None:intergenic 35.0%
!! TTCAACAACGGTTTAAGTTG+TGG - chr5.2:67950813-67950832 MS.gene64672:intron 35.0%
AAAGAAAATTGCGGCATGGT+TGG + chr5.2:67950597-67950616 None:intergenic 40.0%
AAGGGCTAAGAAGGTGAAAA+TGG + chr5.2:67950439-67950458 None:intergenic 40.0%
ACAAGAGAAGTAGTTACCTG+CGG + chr5.2:67951055-67951074 None:intergenic 40.0%
ACCAATATTGAAGGACTTCC+AGG + chr5.2:67950885-67950904 None:intergenic 40.0%
AGTGTTCCAATGATCCTAGT+TGG - chr5.2:67950853-67950872 MS.gene64672:intron 40.0%
ATGAGTATGAGTCGTAACTG+GGG - chr5.2:67951951-67951970 MS.gene64672:intron 40.0%
CCAATATTGAAGGACTTCCA+GGG + chr5.2:67950884-67950903 None:intergenic 40.0%
CTTGGTTGAGCAAAATTTGG+TGG + chr5.2:67950927-67950946 None:intergenic 40.0%
GATGAGTATGAGTCGTAACT+GGG - chr5.2:67951950-67951969 MS.gene64672:intron 40.0%
GTACCCTACATGCATATCAA+AGG + chr5.2:67951800-67951819 None:intergenic 40.0%
GTGTCCTTTGATATGCATGT+AGG - chr5.2:67951793-67951812 MS.gene64672:intron 40.0%
GTTCCCTCTAATTGGCAATT+TGG - chr5.2:67952068-67952087 MS.gene64672:CDS 40.0%
! GACACGACTATTTTCAGCAA+GGG + chr5.2:67951778-67951797 None:intergenic 40.0%
!! AACCAAGTGATAATGGAGGA+TGG - chr5.2:67950940-67950959 MS.gene64672:intron 40.0%
!! TACATTTTAGGAGGAGCATG+TGG - chr5.2:67950729-67950748 MS.gene64672:intron 40.0%
!!! ATTCCTCCTTGTTTTCTGCA+TGG + chr5.2:67951822-67951841 None:intergenic 40.0%
AGTTACCTGCGGTAAGAAAC+AGG + chr5.2:67951044-67951063 None:intergenic 45.0%
ATATTGAAGGACTTCCAGGG+TGG + chr5.2:67950881-67950900 None:intergenic 45.0%
CACCATCCTCCATTATCACT+TGG + chr5.2:67950945-67950964 None:intergenic 45.0%
CCCTGGAAGTCCTTCAATAT+TGG - chr5.2:67950881-67950900 MS.gene64672:intron 45.0%
GGATGAGTATGAGTCGTAAC+TGG - chr5.2:67951949-67951968 MS.gene64672:intron 45.0%
GGCATAGCAAGATCAAAGTG+TGG + chr5.2:67950981-67951000 None:intergenic 45.0%
GGCTAAGAAGGTGAAAATGG+TGG + chr5.2:67950436-67950455 None:intergenic 45.0%
GTACCATGCAGAAAACAAGG+AGG - chr5.2:67951816-67951835 MS.gene64672:intron 45.0%
GTTCTAATCACCAACGTTGC+AGG - chr5.2:67951879-67951898 MS.gene64672:intron 45.0%
TAACTAACCCATTGTTCCGG+AGG + chr5.2:67950553-67950572 None:intergenic 45.0%
TGAGTATGAGTCGTAACTGG+GGG - chr5.2:67951952-67951971 MS.gene64672:intron 45.0%
TTCGGTTGAAGTGAGGAGAA+GGG + chr5.2:67950457-67950476 None:intergenic 45.0%
! AGGGTACCATGCAGAAAACA+AGG - chr5.2:67951813-67951832 MS.gene64672:intron 45.0%
! GGACACGACTATTTTCAGCA+AGG + chr5.2:67951779-67951798 None:intergenic 45.0%
! TTAGGAGGAGCATGTGGATA+TGG - chr5.2:67950735-67950754 MS.gene64672:intron 45.0%
! TTGTTCCTGTTTCTTACCGC+AGG - chr5.2:67951036-67951055 MS.gene64672:intron 45.0%
!! GCTCAACCAAGTGATAATGG+AGG - chr5.2:67950936-67950955 MS.gene64672:intron 45.0%
!! ATATTAAAAATTACTATAAT+AGG - chr5.2:67951503-67951522 MS.gene64672:CDS 5.0%
AGATCAAAGTGTGGTCGTGG+AGG + chr5.2:67950972-67950991 None:intergenic 50.0%
AGTGAGGAGAAGGGCTAAGA+AGG + chr5.2:67950448-67950467 None:intergenic 50.0%
CGGCTTCCGTTACTTCAACT+TGG - chr5.2:67951857-67951876 MS.gene64672:intron 50.0%
CTTCGGTTGAAGTGAGGAGA+AGG + chr5.2:67950458-67950477 None:intergenic 50.0%
GAAAATTGCGGCATGGTTGG+TGG + chr5.2:67950594-67950613 None:intergenic 50.0%
GACGCGAGTTTGAATCTGCT+AGG + chr5.2:67950641-67950660 None:intergenic 50.0%
GATCAAAGTGTGGTCGTGGA+GGG + chr5.2:67950971-67950990 None:intergenic 50.0%
GCAAGATCAAAGTGTGGTCG+TGG + chr5.2:67950975-67950994 None:intergenic 50.0%
GTCGTAACTGGGGGCAAAAT+TGG - chr5.2:67951961-67951980 MS.gene64672:intron 50.0%
GTGGCACCAACTAGGATCAT+TGG + chr5.2:67950862-67950881 None:intergenic 50.0%
ATCACCAACGTTGCAGGTGC+AGG - chr5.2:67951885-67951904 MS.gene64672:intron 55.0%
ATCACCTGCACCTGCAACGT+TGG + chr5.2:67951892-67951911 None:intergenic 55.0%
! GTCTGGCTTCGGTTGAAGTG+AGG + chr5.2:67950464-67950483 None:intergenic 55.0%
ACCGCTCACGCCACCTTCTA+CGG - chr5.2:67950516-67950535 MS.gene64672:CDS 60.0%
AGACTCCCCGGTGTCTACAC+CGG - chr5.2:67950480-67950499 MS.gene64672:CDS 60.0%
AGCGACGCCTCCGGAACAAT+GGG - chr5.2:67950543-67950562 MS.gene64672:CDS 60.0%
CTTCCAGGGTGGCACCAACT+AGG + chr5.2:67950870-67950889 None:intergenic 60.0%
TCAACCGAAGCCAGACTCCC+CGG - chr5.2:67950468-67950487 MS.gene64672:CDS 60.0%
!! GATCCTAGTTGGTGCCACCC+TGG - chr5.2:67950864-67950883 MS.gene64672:intron 60.0%
AGCGGTTTGCCATGCTCCGC+CGG + chr5.2:67950502-67950521 None:intergenic 65.0%
CAGCGACGCCTCCGGAACAA+TGG - chr5.2:67950542-67950561 MS.gene64672:CDS 65.0%
GCCGTAGAAGGTGGCGTGAG+CGG + chr5.2:67950520-67950539 None:intergenic 65.0%
GCTCACGCCACCTTCTACGG+CGG - chr5.2:67950519-67950538 MS.gene64672:CDS 65.0%
GGTGTAGACACCGGGGAGTC+TGG + chr5.2:67950481-67950500 None:intergenic 65.0%
GTGTCTACACCGGCGGAGCA+TGG - chr5.2:67950490-67950509 MS.gene64672:CDS 65.0%
TGCTCCGCCGGTGTAGACAC+CGG + chr5.2:67950490-67950509 None:intergenic 65.0%
! GACACCGGGGAGTCTGGCTT+CGG + chr5.2:67950475-67950494 None:intergenic 65.0%
CTCCCCGGTGTCTACACCGG+CGG - chr5.2:67950483-67950502 MS.gene64672:CDS 70.0%
CTCCGCCGGTGTAGACACCG+GGG + chr5.2:67950488-67950507 None:intergenic 70.0%
GCTCCGCCGGTGTAGACACC+GGG + chr5.2:67950489-67950508 None:intergenic 70.0%
GTCGCTGCCGCCGTAGAAGG+TGG + chr5.2:67950529-67950548 None:intergenic 70.0%
GGCGTCGCTGCCGCCGTAGA+AGG + chr5.2:67950532-67950551 None:intergenic 75.0%
TACGGCGGCAGCGACGCCTC+CGG - chr5.2:67950534-67950553 MS.gene64672:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 67950414 67952124 67950414 ID=MS.gene64672
chr5.2 mRNA 67950414 67952124 67950414 ID=MS.gene64672.t1;Parent=MS.gene64672
chr5.2 exon 67951974 67952124 67951974 ID=MS.gene64672.t1.exon1;Parent=MS.gene64672.t1
chr5.2 CDS 67951974 67952124 67951974 ID=cds.MS.gene64672.t1;Parent=MS.gene64672.t1
chr5.2 exon 67951481 67951799 67951481 ID=MS.gene64672.t1.exon2;Parent=MS.gene64672.t1
chr5.2 CDS 67951481 67951799 67951481 ID=cds.MS.gene64672.t1;Parent=MS.gene64672.t1
chr5.2 exon 67950414 67950723 67950414 ID=MS.gene64672.t1.exon3;Parent=MS.gene64672.t1
chr5.2 CDS 67950414 67950723 67950414 ID=cds.MS.gene64672.t1;Parent=MS.gene64672.t1
Gene Sequence

>MS.gene64672

ATGACTAAGCTCAACATCACCACCATTTTCACCTTCTTAGCCCTTCTCCTCACTTCAACCGAAGCCAGACTCCCCGGTGTCTACACCGGCGGAGCATGGCAAACCGCTCACGCCACCTTCTACGGCGGCAGCGACGCCTCCGGAACAATGGGTTAGTTAGTACTAGAAAAAAAATAACCACCAACCATGCCGCAATTTTCTTTATTTTTTGTTCTAAAAATATACCTAGCAGATTCAAACTCGCGTCGCAACATATCAAATGTCTCTTATATATTCATTTAATAATGCTTTTTTGTGCTAATGTTAAATTTTGGTTACATTTTAGGAGGAGCATGTGGATATGGAAATTTGTATAGTCAAGGTTATGGTGTGAACACAGCAGCATTAAGCACAGCATTATTCAACAACGGTTTAAGTTGTGGCTCGTGTTTTGAGTTAAAGTGTTCCAATGATCCTAGTTGGTGCCACCCTGGAAGTCCTTCAATATTGGTAACTGCTACAAATTTTTGTCCACCAAATTTTGCTCAACCAAGTGATAATGGAGGATGGTGTAACCCTCCACGACCACACTTTGATCTTGCTATGCCTATGTTCCTCAAAATTGCTCAATATCGTGCTGGTATTGTTCCTGTTTCTTACCGCAGGTAACTACTTCTCTTGTTTACTTTCACTCCAAATTTCATTTTCTTTTTTATAAAACTAGCCTAATTTGTTTGTGTTTATTATTTTCTTTTATTTCATTGTTTTAATCTTGTAGCATTCCTTGTATAAATATTATATTTTCCTTTTTTACATTTTTTCCCATGCCTCTTTAGTTTCTTTTTATTTTATAATTAGTACTATTATGGAAGAAAAAAATTGTACAGTACTTTTTCCATATAAAAATTTCATGAAGTGTGATTGAAGGTATCTTTTTTAATTTTTTGTAAAGATGCTAAAAATTAATATCACTATATTTTGATTCCTTTAAAAAAAAATAAGACCATTTACAAATATAACAAAAAAAATCATTATAAAGAATAATGTAAATGTCTCGTAAGCGTAGCTCAGTTGATGCTACTAAAGACATCATGTACGAAGGTACTATAAATATTAAAAATTACTATAATAGGATAAATCAAAATTAAAATGAAATCAATCAAAAAATTTAAGACTATTTGATAATGTCAATATTGTTAGATTGAAATGGTTGATCTAAACCGGTTCAAGTTTTGTGACAAACCAGTCATTTTGCCGCATATTTACACTACTCACGAAACAACAAAATTTAGAATCTACTTTTCTGCCACTCTTGTACTATACTAGTACTAGTTAACATATATTTTATTGCCCTTTATGTTGTGTTTTATTACAACTTTATACCCTTGCTGAAAATAGTCGTGTCCTTTGATATGCATGTAGGGTACCATGCAGAAAACAAGGAGGAATAAGATACACAATCAACGGCTTCCGTTACTTCAACTTGGTTCTAATCACCAACGTTGCAGGTGCAGGTGATATAGTGAAGACTAGTGTTAAAGGTTCAAAAACTGGTTGGATGAGTATGAGTCGTAACTGGGGGCAAAATTGGCAATCAAATTCTGTTTTGGTTGGTCAATCACTTTCTTTTAGGGTTACATCCAGTGATAAACGTACTTCAACTTCTTGGAATATTGTTCCCTCTAATTGGCAATTTGGTCAAACTTTCACTGGCAAGAATTTTCGAGTCTAA
Protein sequence

>MS.gene64672.t1

MTKLNITTIFTFLALLLTSTEARLPGVYTGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCSNDPSWCHPGSPSILVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKQGGIRYTINGFRYFNLVLITNVAGAGDIVKTSVKGSKTGWMSMSRNWGQNWQSNSVLVGQSLSFRVTSSDKRTSTSWNIVPSNWQFGQTFTGKNFRV