AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029447

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029447.t1 MTR_1g110210 97.546 326 7 1 1 326 1 325 0.0 647
MS.gene029447.t1 MTR_7g112430 72.993 411 109 2 15 425 14 422 0.0 595
MS.gene029447.t1 MTR_1g083750 69.830 411 122 2 14 423 13 422 0.0 571
MS.gene029447.t1 MTR_1g019760 59.809 418 162 4 8 423 4 417 0.0 523
MS.gene029447.t1 MTR_3g101540 58.588 425 167 5 6 426 3 422 1.54e-179 508
MS.gene029447.t1 MTR_3g101540 58.491 424 167 5 6 425 3 421 1.50e-178 505
MS.gene029447.t1 MTR_1g019760 61.582 354 131 3 8 359 4 354 7.92e-162 462
MS.gene029447.t1 MTR_1g083750 70.091 331 97 2 94 423 1 330 6.92e-159 451
MS.gene029447.t1 MTR_7g029240 57.783 424 150 11 15 424 14 422 1.35e-146 424
MS.gene029447.t1 MTR_1g014640 31.984 247 144 9 58 299 97 324 9.85e-27 110
MS.gene029447.t1 MTR_1g013400 31.984 247 144 9 58 299 97 324 9.85e-27 110
MS.gene029447.t1 MTR_1g115570 33.577 274 146 15 36 300 93 339 4.60e-26 108
MS.gene029447.t1 MTR_3g105730 31.557 244 143 9 58 296 32 256 1.80e-25 105
MS.gene029447.t1 MTR_3g105730 31.557 244 143 9 58 296 54 278 3.07e-25 105
MS.gene029447.t1 MTR_4g125810 29.392 296 153 10 47 298 220 503 4.92e-23 101
MS.gene029447.t1 MTR_3g464650 28.517 263 158 10 44 298 74 314 2.07e-22 97.4
MS.gene029447.t1 MTR_3g091060 33.333 255 141 11 47 296 108 338 9.91e-22 96.3
MS.gene029447.t1 MTR_3g464700 30.909 220 128 8 44 261 98 295 4.18e-21 94.0
MS.gene029447.t1 MTR_5g071550 26.394 269 173 8 38 298 123 374 1.57e-20 93.2
MS.gene029447.t1 MTR_2g008850 29.185 233 141 8 69 296 19 232 4.87e-20 89.0
MS.gene029447.t1 MTR_8g463130 28.627 255 153 10 47 296 49 279 5.03e-20 90.1
MS.gene029447.t1 MTR_2g078760 27.344 256 159 7 47 298 21 253 6.90e-20 89.0
MS.gene029447.t1 MTR_8g463130 28.627 255 153 10 47 296 21 251 7.31e-20 89.0
MS.gene029447.t1 MTR_4g123080 31.343 268 148 11 68 316 94 344 8.22e-20 90.9
MS.gene029447.t1 MTR_2g078760 27.344 256 159 7 47 298 100 332 9.77e-20 90.1
MS.gene029447.t1 MTR_4g123080 31.343 268 148 11 68 316 112 362 1.07e-19 90.5
MS.gene029447.t1 MTR_2g008850 28.814 236 142 8 67 296 63 278 2.08e-19 88.2
MS.gene029447.t1 MTR_5g009370 31.731 208 121 6 67 266 85 279 2.95e-19 88.6
MS.gene029447.t1 MTR_4g094208 27.039 233 146 7 69 296 61 274 1.43e-18 85.9
MS.gene029447.t1 MTR_3g074610 29.915 234 138 8 69 296 66 279 1.53e-18 85.9
MS.gene029447.t1 MTR_5g063940 30.472 233 138 8 69 296 19 232 3.41e-18 84.0
MS.gene029447.t1 MTR_5g063940 30.472 233 138 8 69 296 66 279 4.88e-18 84.3
MS.gene029447.t1 MTR_2g040500 26.837 313 157 9 47 298 234 535 5.01e-18 86.7
MS.gene029447.t1 MTR_1g086350 30.451 266 152 12 67 314 14 264 8.49e-18 83.6
MS.gene029447.t1 MTR_5g071550 26.941 219 145 5 38 256 123 326 1.33e-17 84.3
MS.gene029447.t1 MTR_1g015110 30.147 272 132 12 70 300 291 545 1.63e-17 85.1
MS.gene029447.t1 MTR_1g086350 30.566 265 151 12 68 314 101 350 1.82e-17 84.0
MS.gene029447.t1 MTR_1g086350 30.566 265 151 12 68 314 117 366 2.04e-17 84.0
MS.gene029447.t1 MTR_3g104710 29.044 272 145 9 63 298 280 539 6.84e-17 83.2
MS.gene029447.t1 MTR_1g050520 30.488 246 138 7 70 300 419 646 3.43e-16 81.3
MS.gene029447.t1 MTR_8g102550 27.969 261 155 9 60 298 139 388 3.75e-16 80.1
MS.gene029447.t1 MTR_2g078760 28.910 211 123 7 47 253 100 287 3.96e-16 79.0
MS.gene029447.t1 MTR_4g094542 30.417 240 134 10 66 296 147 362 1.86e-15 77.8
MS.gene029447.t1 MTR_6g081850 30.605 281 142 15 47 296 58 316 2.41e-15 77.0
MS.gene029447.t1 MTR_3g068200 29.032 217 122 6 62 261 116 317 2.75e-15 77.4
MS.gene029447.t1 MTR_4g116420 27.888 251 138 10 66 296 121 348 5.68e-14 73.6
MS.gene029447.t1 MTR_1g028300 29.960 247 142 8 70 298 146 379 9.37e-14 72.8
MS.gene029447.t1 MTR_3g491830 26.962 293 152 11 62 307 82 359 1.27e-13 72.4
MS.gene029447.t1 MTR_5g080680 27.536 207 124 7 70 263 133 326 1.76e-13 72.0
MS.gene029447.t1 MTR_4g007440 24.749 299 146 11 66 301 49 331 1.95e-12 68.6
MS.gene029447.t1 MTR_3g105880 32.394 142 69 5 129 259 156 281 4.36e-12 67.4
MS.gene029447.t1 MTR_3g105880 32.394 142 69 5 129 259 156 281 7.51e-12 66.6
MS.gene029447.t1 MTR_3g107880 29.070 258 136 12 68 303 119 351 7.97e-12 67.0
MS.gene029447.t1 MTR_3g107880 29.070 258 136 12 68 303 120 352 8.15e-12 67.0
MS.gene029447.t1 MTR_3g107880 29.070 258 136 12 68 303 62 294 9.72e-12 66.2
MS.gene029447.t1 MTR_6g087000 27.019 322 169 16 24 298 79 381 1.15e-11 67.4
MS.gene029447.t1 MTR_7g112490 31.746 189 104 10 132 301 200 382 1.76e-11 65.9
MS.gene029447.t1 MTR_6g087000 27.019 322 169 16 24 298 79 381 1.95e-11 66.6
MS.gene029447.t1 MTR_7g112490 31.746 189 104 10 132 301 182 364 2.23e-11 65.5
MS.gene029447.t1 MTR_5g005810 28.627 255 142 13 67 298 334 571 5.79e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029447.t1 AT1G68410 80.046 436 79 5 1 429 1 435 0.0 696
MS.gene029447.t1 AT1G68410 80.046 436 79 5 1 429 1 435 0.0 696
MS.gene029447.t1 AT1G68410 80.046 436 79 5 1 429 1 435 0.0 696
MS.gene029447.t1 AT1G68410 80.046 436 79 5 1 429 1 435 0.0 696
MS.gene029447.t1 AT1G09160 71.635 416 114 4 11 425 10 422 0.0 595
MS.gene029447.t1 AT1G09160 71.635 416 114 4 11 425 10 422 0.0 595
MS.gene029447.t1 AT1G47380 63.133 415 152 1 12 426 7 420 0.0 540
MS.gene029447.t1 AT4G26080 30.798 263 139 7 70 300 173 424 5.93e-25 106
MS.gene029447.t1 AT4G31750 31.557 244 143 9 58 296 53 277 1.28e-24 103
MS.gene029447.t1 AT4G31750 31.557 244 143 9 58 296 53 277 1.40e-24 103
MS.gene029447.t1 AT4G31750 31.557 244 143 9 58 296 53 277 1.40e-24 103
MS.gene029447.t1 AT5G10740 30.980 255 147 10 47 296 47 277 1.74e-24 104
MS.gene029447.t1 AT5G10740 30.980 255 147 10 47 296 47 277 1.74e-24 104
MS.gene029447.t1 AT1G78200 32.946 258 141 12 47 296 2 235 2.91e-24 100
MS.gene029447.t1 AT1G78200 32.946 258 141 12 47 296 2 235 2.91e-24 100
MS.gene029447.t1 AT1G67820 32.735 223 128 9 43 261 89 293 4.69e-24 103
MS.gene029447.t1 AT1G67820 32.735 223 128 9 43 261 125 329 6.95e-24 103
MS.gene029447.t1 AT1G78200 32.946 258 141 12 47 296 47 280 7.25e-24 100
MS.gene029447.t1 AT1G78200 32.946 258 141 12 47 296 47 280 7.25e-24 100
MS.gene029447.t1 AT1G78200 32.946 258 141 12 47 296 47 280 7.25e-24 100
MS.gene029447.t1 AT1G34750 31.250 256 145 10 47 296 49 279 9.38e-24 100
MS.gene029447.t1 AT1G34750 31.250 256 145 10 47 296 49 279 9.38e-24 100
MS.gene029447.t1 AT1G34750 31.250 256 145 10 47 296 49 279 9.38e-24 100
MS.gene029447.t1 AT5G57050 29.259 270 147 8 62 298 113 371 1.44e-23 102
MS.gene029447.t1 AT5G53140 30.303 264 157 9 47 306 115 355 1.69e-23 102
MS.gene029447.t1 AT5G53140 30.303 264 157 9 47 306 115 355 1.69e-23 102
MS.gene029447.t1 AT5G57050 29.259 270 147 8 62 298 153 411 2.57e-23 101
MS.gene029447.t1 AT5G24940 30.588 255 148 10 47 296 47 277 3.40e-23 101
MS.gene029447.t1 AT1G22280 30.472 233 144 7 69 296 65 284 3.69e-23 99.0
MS.gene029447.t1 AT1G43900 30.182 275 153 12 34 296 119 366 4.13e-23 100
MS.gene029447.t1 AT1G07160 27.737 274 166 9 38 298 122 376 5.15e-23 100
MS.gene029447.t1 AT2G34740 31.518 257 149 10 47 299 102 335 1.52e-22 98.2
MS.gene029447.t1 AT2G40180 28.571 245 155 7 68 306 160 390 3.18e-22 98.2
MS.gene029447.t1 AT1G22280 30.472 233 138 7 69 296 65 278 6.40e-22 95.5
MS.gene029447.t1 AT2G20630 26.667 255 158 10 47 296 46 276 4.09e-20 90.1
MS.gene029447.t1 AT4G28400 27.165 254 158 8 47 296 28 258 5.23e-20 89.7
MS.gene029447.t1 AT4G28400 27.165 254 158 8 47 296 50 280 6.01e-20 89.7
MS.gene029447.t1 AT2G20630 26.378 254 158 10 47 295 46 275 2.58e-19 88.2
MS.gene029447.t1 AT2G40860 30.450 289 153 10 33 300 389 650 3.79e-19 90.5
MS.gene029447.t1 AT2G30020 28.216 241 146 9 68 298 169 392 4.09e-19 89.4
MS.gene029447.t1 AT2G40860 30.450 289 153 10 33 300 291 552 5.11e-19 89.7
MS.gene029447.t1 AT3G51470 30.333 300 155 16 32 306 24 294 8.46e-19 87.0
MS.gene029447.t1 AT3G51470 30.333 300 155 16 32 306 68 338 1.14e-18 87.4
MS.gene029447.t1 AT2G40860 30.894 246 125 8 33 259 389 608 9.54e-18 86.3
MS.gene029447.t1 AT2G34740 29.911 224 134 7 51 271 100 303 1.18e-17 83.6
MS.gene029447.t1 AT2G34740 29.911 224 134 7 51 271 118 321 1.20e-17 84.0
MS.gene029447.t1 AT3G15260 27.559 254 157 8 47 296 56 286 4.05e-17 81.6
MS.gene029447.t1 AT3G15260 27.559 254 157 8 47 296 56 286 4.05e-17 81.6
MS.gene029447.t1 AT1G34750 29.717 212 120 8 47 253 49 236 4.12e-17 80.9
MS.gene029447.t1 AT1G48040 29.193 322 181 14 33 328 75 375 9.16e-17 82.0
MS.gene029447.t1 AT2G25620 29.259 270 133 13 68 312 127 363 2.33e-16 80.9
MS.gene029447.t1 AT2G25620 29.259 270 133 13 68 312 127 363 2.33e-16 80.9
MS.gene029447.t1 AT3G62260 28.986 276 142 12 68 314 26 276 4.07e-16 79.0
MS.gene029447.t1 AT1G18030 29.528 254 135 9 70 296 110 346 4.41e-16 79.7
MS.gene029447.t1 AT3G62260 29.242 277 140 13 68 314 115 365 1.80e-15 78.2
MS.gene029447.t1 AT3G62260 29.242 277 140 13 68 314 116 366 1.88e-15 78.2
MS.gene029447.t1 AT1G17550 27.599 279 137 11 70 298 238 501 5.23e-15 77.4
MS.gene029447.t1 AT1G17550 27.599 279 137 11 70 298 238 501 5.23e-15 77.4
MS.gene029447.t1 AT1G72770 26.978 278 139 11 70 298 239 501 6.38e-15 77.0
MS.gene029447.t1 AT1G72770 26.978 278 139 11 70 298 239 501 6.38e-15 77.0
MS.gene029447.t1 AT1G72770 26.978 278 139 11 70 298 239 501 6.38e-15 77.0
MS.gene029447.t1 AT1G07430 28.507 221 125 7 63 266 151 355 9.12e-15 76.3
MS.gene029447.t1 AT3G11410 27.679 224 121 7 63 261 131 338 1.31e-13 72.4
MS.gene029447.t1 AT5G27930 26.804 291 169 12 43 295 66 350 4.35e-13 70.9
MS.gene029447.t1 AT5G27930 26.804 291 169 12 43 295 66 350 4.35e-13 70.9
MS.gene029447.t1 AT5G51760 26.984 252 142 8 42 266 87 323 9.09e-13 69.7
MS.gene029447.t1 AT5G57050 31.138 167 97 6 62 221 153 308 1.03e-12 68.9
MS.gene029447.t1 AT5G51760 26.984 252 142 8 42 266 117 353 1.26e-12 69.7
MS.gene029447.t1 AT5G59220 29.167 216 127 8 63 266 142 343 1.36e-12 69.3
MS.gene029447.t1 AT1G18030 29.952 207 106 8 70 254 110 299 3.98e-12 67.4
MS.gene029447.t1 AT2G40860 30.088 226 113 8 33 239 389 588 4.43e-12 68.6
MS.gene029447.t1 AT3G05640 29.388 245 138 13 72 288 96 333 2.58e-11 65.1
MS.gene029447.t1 AT3G05640 29.388 245 138 13 72 288 96 333 2.58e-11 65.1
MS.gene029447.t1 AT3G05640 29.388 245 138 13 72 288 96 333 2.58e-11 65.1

Find 121 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTAACCCTCTTGTTCTT+AGG 0.128917 1.2:-81595224 None:intergenic
TAATTGCTTCTGATGGAATA+TGG 0.192465 1.2:+81595014 MS.gene029447:CDS
TGTGCTCTTCCTCGAGGGCT+TGG 0.272782 1.2:+81594085 MS.gene029447:CDS
CCTAAGAACAAGAGGGTTAA+AGG 0.275358 1.2:+81595224 MS.gene029447:CDS
TTACCTAGGGCGTTGGTTGC+TGG 0.278710 1.2:+81594130 MS.gene029447:CDS
GTTAGTGGCAATTCGTTATC+AGG 0.309802 1.2:-81595282 None:intergenic
CTTTAACCCTCTTGTTCTTA+GGG 0.310359 1.2:-81595223 None:intergenic
TCTGGTTCACAGATCTTTGA+TGG 0.328672 1.2:+81594004 MS.gene029447:intron
ACTGATTGTCAGCGTGTTCC+CGG 0.350328 1.2:+81593842 MS.gene029447:CDS
GTGCTCTTCCTCGAGGGCTT+GGG 0.386635 1.2:+81594086 MS.gene029447:CDS
TAGCCTGTGGTCAACTGTTA+AGG 0.392857 1.2:-81594446 None:intergenic
ACCTTCACTTGTTTGACATA+AGG 0.398711 1.2:-81594873 None:intergenic
AGAGATGAAAAGTGAGAAGA+TGG 0.405375 1.2:+81593751 MS.gene029447:CDS
CTATGCCTTTCAAGGTCAAT+AGG 0.410238 1.2:+81594816 MS.gene029447:CDS
ACTTGTTTGACATAAGGTAT+TGG 0.425889 1.2:-81594867 None:intergenic
TGCCGAACTTGCTGCTATGC+AGG 0.428289 1.2:+81595084 MS.gene029447:CDS
GAGAAGCCTACTGTAAGAAT+TGG 0.429166 1.2:+81593773 MS.gene029447:CDS
AACTCGGGGCAATCAACATC+TGG 0.433595 1.2:+81596308 MS.gene029447:CDS
AAACGACGTTGAAGAGTTCC+CGG 0.433785 1.2:-81593861 None:intergenic
GTGGAAGAATTGTTTGAAGA+AGG 0.437789 1.2:+81595411 MS.gene029447:CDS
TAAGCTGTCGAAGAAGCTTT+CGG 0.444989 1.2:+81595377 MS.gene029447:CDS
CAGGAGGTCTATGCCTTTCA+AGG 0.453251 1.2:+81594808 MS.gene029447:CDS
AGACTTATAATTGCTTCTGA+TGG 0.454700 1.2:+81595007 MS.gene029447:CDS
TGCTGCTGCTGTTTATACTA+AGG 0.456471 1.2:+81594039 MS.gene029447:CDS
TGGATTTGTTAAGACTGATA+AGG 0.457043 1.2:+81594150 MS.gene029447:CDS
AACCTGCATAGCAGCAAGTT+CGG 0.460496 1.2:-81595086 None:intergenic
TGGCCTCCGGTGAAGGGAGG+CGG 0.465495 1.2:+81593684 MS.gene029447:CDS
GACCTCCTGGCCAGCATCGA+AGG 0.472439 1.2:-81594794 None:intergenic
AATTGCTTCTGATGGAATAT+GGG 0.474848 1.2:+81595015 MS.gene029447:CDS
GGTCCCCTTCGATGCTGGCC+AGG 0.475255 1.2:+81594789 MS.gene029447:CDS
GGATGCTGTATCATCAGAAC+TGG 0.480880 1.2:+81595036 MS.gene029447:CDS
AGATTGGTCCCCTTCGATGC+TGG 0.482698 1.2:+81594784 MS.gene029447:intron
GTTGGTAGGCTTAGCATTGT+CGG 0.485201 1.2:+81594605 MS.gene029447:CDS
TTGCCATGGCTTCGAACTTG+TGG 0.487147 1.2:-81596408 None:intergenic
TGGACGGATATGCCCTCGCT+TGG 0.492365 1.2:-81596368 None:intergenic
CAAGCTGCTCAATCTAAGAA+AGG 0.493673 1.2:+81593797 MS.gene029447:CDS
TCAATAGGAGACATGGATGT+TGG 0.494506 1.2:+81594831 MS.gene029447:CDS
AAGCTGCTCAATCTAAGAAA+GGG 0.500245 1.2:+81593798 MS.gene029447:CDS
TGCATAGCAGCAAGTTCGGC+AGG 0.507672 1.2:-81595082 None:intergenic
CGACAATCACAACATAGAAA+AGG 0.508453 1.2:-81596434 None:intergenic
TGCTGCTATGCAGGTTGTCA+AGG 0.513700 1.2:+81595093 MS.gene029447:CDS
ATGATGCCGCCTCCCTTCAC+CGG 0.516244 1.2:-81593690 None:intergenic
TCTCCACAAGTTCGAAGCCA+TGG 0.517653 1.2:+81596405 MS.gene029447:CDS
TAAGATATGGCCTCCGGTGA+AGG 0.520359 1.2:+81593677 None:intergenic
AACTATCACAAATGTGGCTG+TGG 0.524845 1.2:-81594347 None:intergenic
GCTTTCGGCTATAAATATAG+TGG 0.529624 1.2:+81595392 MS.gene029447:CDS
CTTGAAAGGCATAGACCTCC+TGG 0.529945 1.2:-81594807 None:intergenic
AAAAGGTCCCGTGATACTGC+TGG 0.531393 1.2:+81595354 MS.gene029447:CDS
GCAAGCTTTACCTAGGGCGT+TGG 0.533024 1.2:+81594123 MS.gene029447:CDS
CTGATTGTCAGCGTGTTCCC+GGG 0.534330 1.2:+81593843 MS.gene029447:CDS
AGGATGCAATGGAGGGAAAA+CGG 0.536775 1.2:+81596465 MS.gene029447:CDS
ACCTCCTGGCCAGCATCGAA+GGG 0.540520 1.2:-81594793 None:intergenic
CAATATTCTCTTCTAGCCTG+TGG 0.542826 1.2:-81594459 None:intergenic
TGTCTCCTATTGACCTTGAA+AGG 0.545734 1.2:-81594821 None:intergenic
GAAAATTGAACCTGCGTGGA+CGG 0.545829 1.2:-81596384 None:intergenic
TGTTGTGTGCTCTTCCTCGA+GGG 0.548020 1.2:+81594080 MS.gene029447:CDS
GCTTGACCAATTCTTACAGT+AGG 0.550389 1.2:-81593779 None:intergenic
AGGGAACGTGTTACTGCAAG+TGG 0.553158 1.2:+81594575 MS.gene029447:CDS
TTAGGAAATGATGAAAACTC+GGG 0.553371 1.2:+81596293 MS.gene029447:CDS
CGATAAGAAGGATGCAATGG+AGG 0.555078 1.2:+81596457 MS.gene029447:CDS
AGTGGTTGCAAGCTTTACCT+AGG 0.559227 1.2:+81594116 MS.gene029447:CDS
CTCTTAAGCAATGCAGCAAG+AGG 0.562992 1.2:-81593728 None:intergenic
CAGCTTACCAGCAGTATCAC+GGG 0.564104 1.2:-81595361 None:intergenic
CTTGATCTTGCTCCAAGCGA+GGG 0.564745 1.2:+81596356 MS.gene029447:CDS
GTGGAGTAAGATATGGCCTC+CGG 0.564989 1.2:+81593671 None:intergenic
ACTGCAAGTGGAGGTGAAGT+TGG 0.568657 1.2:+81594587 MS.gene029447:CDS
TTGTGATTGTCGCGATAAGA+AGG 0.569451 1.2:+81596445 MS.gene029447:CDS
CAAGTGGAGGTGAAGTTGGT+AGG 0.576583 1.2:+81594591 MS.gene029447:CDS
AGGTGGTCACAGCACCACCC+TGG 0.576787 1.2:-81594426 None:intergenic
GGTGGTCACAGCACCACCCT+GGG 0.577010 1.2:-81594425 None:intergenic
AAGATATGGCCTCCGGTGAA+GGG 0.577203 1.2:+81593678 None:intergenic
GAGGGCTTGGGCGAGACGAG+TGG 0.581649 1.2:+81594098 MS.gene029447:CDS
CCACATTTGTGATAGTTGAT+CGG 0.583822 1.2:+81594353 MS.gene029447:CDS
CCCCTTCGATGCTGGCCAGG+AGG 0.584688 1.2:+81594792 MS.gene029447:CDS
GTGGCAATTCGTTATCAGGT+GGG 0.586904 1.2:-81595278 None:intergenic
AATCCAGCAACCAACGCCCT+AGG 0.587420 1.2:-81594133 None:intergenic
AGTGGCAATTCGTTATCAGG+TGG 0.587717 1.2:-81595279 None:intergenic
ACAGCTTACCAGCAGTATCA+CGG 0.589791 1.2:-81595362 None:intergenic
AACGACGTTGAAGAGTTCCC+GGG 0.591223 1.2:-81593860 None:intergenic
ATTAGGAAATGATGAAAACT+CGG 0.591636 1.2:+81596292 MS.gene029447:CDS
ACCTTATGTCAAACAAGTGA+AGG 0.591802 1.2:+81594872 MS.gene029447:CDS
TTCAAGGTCAATAGGAGACA+TGG 0.592569 1.2:+81594824 MS.gene029447:CDS
ACTTGATCTTGCTCCAAGCG+AGG 0.593031 1.2:+81596355 MS.gene029447:CDS
GATCAGCAATGCTTGCTGAA+AGG 0.596385 1.2:+81595433 MS.gene029447:CDS
TGATCGGTGGACTGTGACAG+TGG 0.600512 1.2:+81594369 MS.gene029447:CDS
GTGGTTGCAAGCTTTACCTA+GGG 0.600761 1.2:+81594117 MS.gene029447:CDS
ATGCCGCCTCCCTTCACCGG+AGG 0.602036 1.2:-81593687 None:intergenic
TCGTTGTATACTAGATACCC+AGG 0.602267 1.2:+81594408 MS.gene029447:CDS
GTGTTGTGTGCTCTTCCTCG+AGG 0.603560 1.2:+81594079 MS.gene029447:CDS
TCGCGATAAGAAGGATGCAA+TGG 0.608406 1.2:+81596454 MS.gene029447:CDS
CAGATCTTTGATGGACACAA+TGG 0.608852 1.2:+81594013 MS.gene029447:intron
TAGCATTGTCGGAGGTGCTG+AGG 0.609567 1.2:+81594616 MS.gene029447:CDS
CAGGAAGCCCTAAGAACAAG+AGG 0.610025 1.2:+81595216 MS.gene029447:intron
TCGTCTCGCCCAAGCCCTCG+AGG 0.610958 1.2:-81594094 None:intergenic
GATAAGAAGGATGCAATGGA+GGG 0.614584 1.2:+81596458 MS.gene029447:CDS
ACAAGTTCGAAGCCATGGCA+AGG 0.618267 1.2:+81596410 MS.gene029447:CDS
CATTTGTGATAGTTGATCGG+TGG 0.623061 1.2:+81594356 MS.gene029447:CDS
TTTAGCTATCAAAAGCTGGT+GGG 0.624289 1.2:+81594984 MS.gene029447:intron
AGCTGCTCAATCTAAGAAAG+GGG 0.626609 1.2:+81593799 MS.gene029447:CDS
CCTGTGGTCAACTGTTAAGG+TGG 0.627640 1.2:-81594443 None:intergenic
CCACCTTAACAGTTGACCAC+AGG 0.628587 1.2:+81594443 MS.gene029447:CDS
CTGGCAGCAAAATCTTGCCG+TGG 0.632235 1.2:+81595055 MS.gene029447:CDS
ACTGTGACAGTGGCATCAGT+TGG 0.635594 1.2:+81594379 MS.gene029447:CDS
CCGATCAACTATCACAAATG+TGG 0.640192 1.2:-81594353 None:intergenic
TGCTCAATCTAAGAAAGGGG+AGG 0.643437 1.2:+81593802 MS.gene029447:CDS
CAAGTTCGGCAGGCAAACCA+CGG 0.645152 1.2:-81595072 None:intergenic
CGCTTGGAGCAAGATCAAGT+TGG 0.652054 1.2:-81596352 None:intergenic
CCTCCTGGCCAGCATCGAAG+GGG 0.656740 1.2:-81594792 None:intergenic
GATAAGGAATTTCAGAGCAG+AGG 0.660496 1.2:+81594166 MS.gene029447:CDS
CATAGAAAAGGACCTTGCCA+TGG 0.661304 1.2:-81596422 None:intergenic
ATATGGCCTCCGGTGAAGGG+AGG 0.664809 1.2:+81593681 None:intergenic
GGTAGGCTTAGCATTGTCGG+AGG 0.666572 1.2:+81594608 MS.gene029447:CDS
ATGGAGGGAAAACGGCCTAG+TGG 0.672437 1.2:+81596473 MS.gene029447:CDS
TATGACACTTTCACTCCACT+AGG 0.675400 1.2:-81596488 None:intergenic
GAGGGCATATCCGTCCACGC+AGG 0.679729 1.2:+81596374 MS.gene029447:CDS
GAACGTGTTACTGCAAGTGG+AGG 0.682299 1.2:+81594578 MS.gene029447:CDS
CGTTGTATACTAGATACCCA+GGG 0.684411 1.2:+81594409 MS.gene029447:CDS
AGGAAGCCCTAAGAACAAGA+GGG 0.692722 1.2:+81595217 MS.gene029447:intron
TAGGAAATGATGAAAACTCG+GGG 0.696713 1.2:+81596294 MS.gene029447:CDS
TGGAGAAAATTGAACCTGCG+TGG 0.709652 1.2:-81596388 None:intergenic
TGTATACTAGATACCCAGGG+TGG 0.787728 1.2:+81594412 MS.gene029447:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACTAAAAATTTTAAACA+AGG - chr1.2:81594754-81594773 None:intergenic 10.0%
!! TAATCTTTAATAATATAGAG+TGG + chr1.2:81595660-81595679 MS.gene029447:intron 15.0%
!! TATAAAAAAACTCAACATTA+AGG + chr1.2:81595781-81595800 MS.gene029447:intron 15.0%
!! TCTCTTTCATTAATATTTAA+AGG - chr1.2:81596061-81596080 None:intergenic 15.0%
!!! AATTTTGATATTTATCTCTA+AGG + chr1.2:81594493-81594512 MS.gene029447:intron 15.0%
!! ATAGAAGGAAAACAATATAA+AGG - chr1.2:81595528-81595547 None:intergenic 20.0%
!! CATTAAGGATTCTTAATATA+AGG + chr1.2:81595796-81595815 MS.gene029447:intron 20.0%
!! TAGAAGGAAAACAATATAAA+GGG - chr1.2:81595527-81595546 None:intergenic 20.0%
!! TATGAATTATGAAACTATTC+TGG + chr1.2:81596232-81596251 MS.gene029447:intron 20.0%
!! TTAAAACTATTAATGTGACT+TGG - chr1.2:81596158-81596177 None:intergenic 20.0%
!!! AGTCACATTAATAGTTTTAA+AGG + chr1.2:81596158-81596177 MS.gene029447:intron 20.0%
!!! ATTTTTTTTCGTTCAAGAAA+AGG + chr1.2:81595337-81595356 MS.gene029447:CDS 20.0%
!!! TGTTCTTTTAATAACAACAA+GGG + chr1.2:81595619-81595638 MS.gene029447:intron 20.0%
!!! TTTATATTGTTTTCCTTCTA+TGG + chr1.2:81595527-81595546 MS.gene029447:intron 20.0%
!!! TTTTACGTATCAAATAGATA+AGG + chr1.2:81595868-81595887 MS.gene029447:intron 20.0%
! ATAGAAAGCTATTCTTATTG+AGG + chr1.2:81594226-81594245 MS.gene029447:intron 25.0%
! ATCAAGGCTTATTCAAATAT+TGG + chr1.2:81595751-81595770 MS.gene029447:intron 25.0%
! ATTAGGAAATGATGAAAACT+CGG + chr1.2:81596292-81596311 MS.gene029447:CDS 25.0%
! ATTATGTCATGTAGTTCAAA+AGG - chr1.2:81593938-81593957 None:intergenic 25.0%
! GTAAAAAATGAAAGCAATCT+CGG - chr1.2:81593976-81593995 None:intergenic 25.0%
! TTAAAGGATGCAAGATTATA+CGG + chr1.2:81596174-81596193 MS.gene029447:intron 25.0%
!! AACCTAATCTAATTTTGTCT+AGG + chr1.2:81594310-81594329 MS.gene029447:intron 25.0%
!! AATATTGGTAACTGGTTAAA+TGG + chr1.2:81595696-81595715 MS.gene029447:intron 25.0%
!! ACTTTGAAGATTTCACATTT+AGG + chr1.2:81595722-81595741 MS.gene029447:intron 25.0%
!! CTGTTCTTTTAATAACAACA+AGG + chr1.2:81595618-81595637 MS.gene029447:intron 25.0%
!! GCTTGTAATATTTTGTTAAC+TGG + chr1.2:81595987-81596006 MS.gene029447:intron 25.0%
!! GGAATATTCAGAAGATTTTT+CGG - chr1.2:81595506-81595525 None:intergenic 25.0%
!! TATACGGTGTCAAATTTATT+AGG + chr1.2:81596190-81596209 MS.gene029447:intron 25.0%
!! TTCTTCCTAATTTCCATTTT+AGG - chr1.2:81594676-81594695 None:intergenic 25.0%
!!! AGTTTTGAATAATTGCAGAT+TGG + chr1.2:81594768-81594787 MS.gene029447:intron 25.0%
!!! ATACTTTTTCCATCCTAAAA+TGG + chr1.2:81594660-81594679 MS.gene029447:intron 25.0%
!!! TTTTCTAGCATCTTATCAAA+CGG + chr1.2:81594712-81594731 MS.gene029447:intron 25.0%
AAAGACCTTATAATCAACGA+CGG - chr1.2:81594931-81594950 None:intergenic 30.0%
AAAGCTATTCTTATTGAGGA+TGG + chr1.2:81594230-81594249 MS.gene029447:intron 30.0%
AAGTGAAATAGTATCTACAC+CGG - chr1.2:81596112-81596131 None:intergenic 30.0%
AATTGCTTCTGATGGAATAT+GGG + chr1.2:81595015-81595034 MS.gene029447:CDS 30.0%
ACAAATGGAGGTTAATTCAT+AGG + chr1.2:81595583-81595602 MS.gene029447:intron 30.0%
ACAGAAAAAGTTAACTAACG+CGG - chr1.2:81594519-81594538 None:intergenic 30.0%
ACATATCAATTCCTATTCCT+CGG - chr1.2:81594265-81594284 None:intergenic 30.0%
ACTTGTTTGACATAAGGTAT+TGG - chr1.2:81594870-81594889 None:intergenic 30.0%
AGACTTATAATTGCTTCTGA+TGG + chr1.2:81595007-81595026 MS.gene029447:CDS 30.0%
AGGATTTCTGTCATTACAAA+TGG + chr1.2:81595568-81595587 MS.gene029447:intron 30.0%
AGGCTTATTCAAATATTGGT+TGG + chr1.2:81595755-81595774 MS.gene029447:intron 30.0%
ATTTCTGTCATTACAAATGG+AGG + chr1.2:81595571-81595590 MS.gene029447:intron 30.0%
CTCCTAGACAAAATTAGATT+AGG - chr1.2:81594315-81594334 None:intergenic 30.0%
TAAAAACTTACACTTTGTCG+TGG + chr1.2:81594959-81594978 MS.gene029447:intron 30.0%
TAATTGCTTCTGATGGAATA+TGG + chr1.2:81595014-81595033 MS.gene029447:CDS 30.0%
TACAAGCTTATAATGCTTCT+AGG - chr1.2:81595974-81595993 None:intergenic 30.0%
TATAATCAACGACGGAAATA+AGG - chr1.2:81594923-81594942 None:intergenic 30.0%
TCCATCCTAAAATGGAAATT+AGG + chr1.2:81594668-81594687 MS.gene029447:intron 30.0%
TGATTATAAGGTCTTTGTTC+AGG + chr1.2:81594935-81594954 MS.gene029447:intron 30.0%
TGTAATGACAGAAATCCTAT+GGG - chr1.2:81595566-81595585 None:intergenic 30.0%
TTAGGAAATGATGAAAACTC+GGG + chr1.2:81596293-81596312 MS.gene029447:CDS 30.0%
TTGTAATGACAGAAATCCTA+TGG - chr1.2:81595567-81595586 None:intergenic 30.0%
! ATGAGTTGAACTGTATATAC+AGG + chr1.2:81594552-81594571 MS.gene029447:intron 30.0%
! GATAAGGTTTTTGTATAGAC+TGG + chr1.2:81595884-81595903 MS.gene029447:intron 30.0%
! GGCTTATTCAAATATTGGTT+GGG + chr1.2:81595756-81595775 MS.gene029447:intron 30.0%
! GTTTTCATCATTTCCTAATC+TGG - chr1.2:81596291-81596310 None:intergenic 30.0%
! TATTTCCGTCGTTGATTATA+AGG + chr1.2:81594923-81594942 MS.gene029447:intron 30.0%
!! AACTTTTTCTGTATTGCTCA+TGG + chr1.2:81594527-81594546 MS.gene029447:intron 30.0%
!! TCCTAATTTCCATTTTAGGA+TGG - chr1.2:81594672-81594691 None:intergenic 30.0%
!! TGGATTTGTTAAGACTGATA+AGG + chr1.2:81594150-81594169 MS.gene029447:CDS 30.0%
!!! CATTTTTTACTCACTTCTTC+TGG + chr1.2:81593986-81594005 MS.gene029447:intron 30.0%
AAGCTGCTCAATCTAAGAAA+GGG + chr1.2:81593798-81593817 MS.gene029447:CDS 35.0%
AATCTGGAGGACACATTAAT+TGG - chr1.2:81596275-81596294 None:intergenic 35.0%
ACCTTATGTCAAACAAGTGA+AGG + chr1.2:81594872-81594891 MS.gene029447:CDS 35.0%
ACCTTCACTTGTTTGACATA+AGG - chr1.2:81594876-81594895 None:intergenic 35.0%
ACGTATTCCTACTGTTATTC+AGG + chr1.2:81595197-81595216 MS.gene029447:intron 35.0%
AGAGATGAAAAGTGAGAAGA+TGG + chr1.2:81593751-81593770 MS.gene029447:CDS 35.0%
AGTTGAACTGTATATACAGG+AGG + chr1.2:81594555-81594574 MS.gene029447:intron 35.0%
ATGGAGGTTAATTCATAGGT+TGG + chr1.2:81595587-81595606 MS.gene029447:intron 35.0%
ATTAATGTGTCCTCCAGATT+AGG + chr1.2:81596275-81596294 MS.gene029447:intron 35.0%
CCACATTTGTGATAGTTGAT+CGG + chr1.2:81594353-81594372 MS.gene029447:CDS 35.0%
CGACAATCACAACATAGAAA+AGG - chr1.2:81596437-81596456 None:intergenic 35.0%
CTTTAACCCTCTTGTTCTTA+GGG - chr1.2:81595226-81595245 None:intergenic 35.0%
GCTTTCGGCTATAAATATAG+TGG + chr1.2:81595392-81595411 MS.gene029447:CDS 35.0%
GTAATGACAGAAATCCTATG+GGG - chr1.2:81595565-81595584 None:intergenic 35.0%
GTGGAAGAATTGTTTGAAGA+AGG + chr1.2:81595411-81595430 MS.gene029447:CDS 35.0%
GTTGAACTGTATATACAGGA+GGG + chr1.2:81594556-81594575 MS.gene029447:intron 35.0%
TAGGAAATGATGAAAACTCG+GGG + chr1.2:81596294-81596313 MS.gene029447:CDS 35.0%
TTCATCATTTCCTAATCTGG+AGG - chr1.2:81596288-81596307 None:intergenic 35.0%
TTTAGCTATCAAAAGCTGGT+GGG + chr1.2:81594984-81595003 MS.gene029447:intron 35.0%
! CACATTTAGGATCTAGATCA+AGG + chr1.2:81595735-81595754 MS.gene029447:intron 35.0%
! TTGACAACATTGTTGTTGTC+CGG + chr1.2:81596090-81596109 MS.gene029447:intron 35.0%
! TTGTTTCTCGATTCCTACTT+AGG + chr1.2:81595922-81595941 MS.gene029447:intron 35.0%
! TTTTGTCTAGGAGAAACTTC+TGG + chr1.2:81594322-81594341 MS.gene029447:intron 35.0%
!! TTTTAGCTATCAAAAGCTGG+TGG + chr1.2:81594983-81595002 MS.gene029447:intron 35.0%
!!! GGATTTTAGCTATCAAAAGC+TGG + chr1.2:81594980-81594999 MS.gene029447:intron 35.0%
!!! TCAGCTTATTCCGCTTTTTT+GGG - chr1.2:81595314-81595333 None:intergenic 35.0%
!!! TTCAGCTTATTCCGCTTTTT+TGG - chr1.2:81595315-81595334 None:intergenic 35.0%
AACTATCACAAATGTGGCTG+TGG - chr1.2:81594350-81594369 None:intergenic 40.0%
AGAAATCCTATGGGGACAAA+AGG - chr1.2:81595557-81595576 None:intergenic 40.0%
AGCTGCTCAATCTAAGAAAG+GGG + chr1.2:81593799-81593818 MS.gene029447:CDS 40.0%
CAAGCTGCTCAATCTAAGAA+AGG + chr1.2:81593797-81593816 MS.gene029447:CDS 40.0%
CAATATTCTCTTCTAGCCTG+TGG - chr1.2:81594462-81594481 None:intergenic 40.0%
CATTTGTGATAGTTGATCGG+TGG + chr1.2:81594356-81594375 MS.gene029447:CDS 40.0%
CCGATCAACTATCACAAATG+TGG - chr1.2:81594356-81594375 None:intergenic 40.0%
CCTAAGAACAAGAGGGTTAA+AGG + chr1.2:81595224-81595243 MS.gene029447:CDS 40.0%
CCTTTAACCCTCTTGTTCTT+AGG - chr1.2:81595227-81595246 None:intergenic 40.0%
CGTTGTATACTAGATACCCA+GGG + chr1.2:81594409-81594428 MS.gene029447:CDS 40.0%
CTATGCCTTTCAAGGTCAAT+AGG + chr1.2:81594816-81594835 MS.gene029447:CDS 40.0%
GACAAAAGGATCACCATAGA+AGG - chr1.2:81595543-81595562 None:intergenic 40.0%
GAGAAGCCTACTGTAAGAAT+TGG + chr1.2:81593773-81593792 MS.gene029447:CDS 40.0%
GATAAGAAGGATGCAATGGA+GGG + chr1.2:81596458-81596477 MS.gene029447:CDS 40.0%
GATAAGGAATTTCAGAGCAG+AGG + chr1.2:81594166-81594185 MS.gene029447:CDS 40.0%
GCTTGACCAATTCTTACAGT+AGG - chr1.2:81593782-81593801 None:intergenic 40.0%
GCTTGCATAGAATCCTAAGT+AGG - chr1.2:81595938-81595957 None:intergenic 40.0%
GGAAGAAGATAGCTTACAAC+TGG + chr1.2:81594689-81594708 MS.gene029447:intron 40.0%
GGAATCTGAGCTTGGAATAT+TGG + chr1.2:81595681-81595700 MS.gene029447:intron 40.0%
GTCAACTTCGCAACATGATT+TGG - chr1.2:81595165-81595184 None:intergenic 40.0%
GTTAGTGGCAATTCGTTATC+AGG - chr1.2:81595285-81595304 None:intergenic 40.0%
TAAGCTGTCGAAGAAGCTTT+CGG + chr1.2:81595377-81595396 MS.gene029447:CDS 40.0%
TATAGAGTGGAATCTGAGCT+TGG + chr1.2:81595673-81595692 MS.gene029447:intron 40.0%
TATGACACTTTCACTCCACT+AGG - chr1.2:81596491-81596510 None:intergenic 40.0%
TCAACGACGGAAATAAGGAA+AGG - chr1.2:81594918-81594937 None:intergenic 40.0%
TCAATAGGAGACATGGATGT+TGG + chr1.2:81594831-81594850 MS.gene029447:CDS 40.0%
TCGTTGTATACTAGATACCC+AGG + chr1.2:81594408-81594427 MS.gene029447:CDS 40.0%
TGTCTCCTATTGACCTTGAA+AGG - chr1.2:81594824-81594843 None:intergenic 40.0%
TTCAAGGTCAATAGGAGACA+TGG + chr1.2:81594824-81594843 MS.gene029447:CDS 40.0%
TTGTGATTGTCGCGATAAGA+AGG + chr1.2:81596445-81596464 MS.gene029447:CDS 40.0%
! CAGATCTTTGATGGACACAA+TGG + chr1.2:81594013-81594032 MS.gene029447:intron 40.0%
! GAGCTTGGAATATTGGTAAC+TGG + chr1.2:81595688-81595707 MS.gene029447:intron 40.0%
! TCTGGTTCACAGATCTTTGA+TGG + chr1.2:81594004-81594023 MS.gene029447:intron 40.0%
! TGCTGCTGCTGTTTATACTA+AGG + chr1.2:81594039-81594058 MS.gene029447:CDS 40.0%
! TGTTGATTGAGACGTACTCA+AGG + chr1.2:81596016-81596035 MS.gene029447:intron 40.0%
!! AACGTCGTTTTCTGTATTCG+CGG + chr1.2:81593874-81593893 MS.gene029447:CDS 40.0%
!! TATGCTATGCTTGCTGTAGT+TGG + chr1.2:81595129-81595148 MS.gene029447:intron 40.0%
!!! AGCTTATTCCGCTTTTTTGG+GGG - chr1.2:81595312-81595331 None:intergenic 40.0%
!!! CAGCTTATTCCGCTTTTTTG+GGG - chr1.2:81595313-81595332 None:intergenic 40.0%
AAACGACGTTGAAGAGTTCC+CGG - chr1.2:81593864-81593883 None:intergenic 45.0%
AACAACAAGGGACTGAAGCT+AGG + chr1.2:81595631-81595650 MS.gene029447:intron 45.0%
AACCTGCATAGCAGCAAGTT+CGG - chr1.2:81595089-81595108 None:intergenic 45.0%
ACAACAAGGGACTGAAGCTA+GGG + chr1.2:81595632-81595651 MS.gene029447:intron 45.0%
ACAGCTTACCAGCAGTATCA+CGG - chr1.2:81595365-81595384 None:intergenic 45.0%
AGGAAGCCCTAAGAACAAGA+GGG + chr1.2:81595217-81595236 MS.gene029447:intron 45.0%
AGGATGCAATGGAGGGAAAA+CGG + chr1.2:81596465-81596484 MS.gene029447:CDS 45.0%
AGGGCTTCCTGAATAACAGT+AGG - chr1.2:81595207-81595226 None:intergenic 45.0%
AGTGGCAATTCGTTATCAGG+TGG - chr1.2:81595282-81595301 None:intergenic 45.0%
AGTGGTTGCAAGCTTTACCT+AGG + chr1.2:81594116-81594135 MS.gene029447:CDS 45.0%
CATAGAAAAGGACCTTGCCA+TGG - chr1.2:81596425-81596444 None:intergenic 45.0%
CGATAAGAAGGATGCAATGG+AGG + chr1.2:81596457-81596476 MS.gene029447:CDS 45.0%
CTACAGCAAGCATAGCATAG+TGG - chr1.2:81595128-81595147 None:intergenic 45.0%
CTCTTAAGCAATGCAGCAAG+AGG - chr1.2:81593731-81593750 None:intergenic 45.0%
GAAAATTGAACCTGCGTGGA+CGG - chr1.2:81596387-81596406 None:intergenic 45.0%
GGAATACAGAACCGAGGAAT+AGG + chr1.2:81594251-81594270 MS.gene029447:intron 45.0%
GGATGCTGTATCATCAGAAC+TGG + chr1.2:81595036-81595055 MS.gene029447:CDS 45.0%
GTGGCAATTCGTTATCAGGT+GGG - chr1.2:81595281-81595300 None:intergenic 45.0%
GTGGTTGCAAGCTTTACCTA+GGG + chr1.2:81594117-81594136 MS.gene029447:CDS 45.0%
TAACACCTCCCCCAAAAAAG+CGG + chr1.2:81595301-81595320 MS.gene029447:CDS 45.0%
TAGCCTGTGGTCAACTGTTA+AGG - chr1.2:81594449-81594468 None:intergenic 45.0%
TCGCGATAAGAAGGATGCAA+TGG + chr1.2:81596454-81596473 MS.gene029447:CDS 45.0%
TGCTCAATCTAAGAAAGGGG+AGG + chr1.2:81593802-81593821 MS.gene029447:CDS 45.0%
TGGAGAAAATTGAACCTGCG+TGG - chr1.2:81596391-81596410 None:intergenic 45.0%
TGTATACTAGATACCCAGGG+TGG + chr1.2:81594412-81594431 MS.gene029447:CDS 45.0%
! AATTTCAGAGCAGAGGTGTG+TGG + chr1.2:81594173-81594192 MS.gene029447:intron 45.0%
! GATCAGCAATGCTTGCTGAA+AGG + chr1.2:81595433-81595452 MS.gene029447:CDS 45.0%
! GTTGGTAGGCTTAGCATTGT+CGG + chr1.2:81594605-81594624 MS.gene029447:CDS 45.0%
!!! TTATTCCGCTTTTTTGGGGG+AGG - chr1.2:81595309-81595328 None:intergenic 45.0%
!!! TTTTTTGGGGGAGGTGTTAG+TGG - chr1.2:81595300-81595319 None:intergenic 45.0%
AAAAGGTCCCGTGATACTGC+TGG + chr1.2:81595354-81595373 MS.gene029447:CDS 50.0%
AACGACGTTGAAGAGTTCCC+GGG - chr1.2:81593863-81593882 None:intergenic 50.0%
AACTCGGGGCAATCAACATC+TGG + chr1.2:81596308-81596327 MS.gene029447:CDS 50.0%
ACAAGTTCGAAGCCATGGCA+AGG + chr1.2:81596410-81596429 MS.gene029447:CDS 50.0%
ACTGATTGTCAGCGTGTTCC+CGG + chr1.2:81593842-81593861 MS.gene029447:CDS 50.0%
ACTGCAAGTGGAGGTGAAGT+TGG + chr1.2:81594587-81594606 MS.gene029447:CDS 50.0%
ACTGTGACAGTGGCATCAGT+TGG + chr1.2:81594379-81594398 MS.gene029447:CDS 50.0%
ACTTGATCTTGCTCCAAGCG+AGG + chr1.2:81596355-81596374 MS.gene029447:CDS 50.0%
CAACAAGGGACTGAAGCTAG+GGG + chr1.2:81595633-81595652 MS.gene029447:intron 50.0%
CAGCTTACCAGCAGTATCAC+GGG - chr1.2:81595364-81595383 None:intergenic 50.0%
CAGGAAGCCCTAAGAACAAG+AGG + chr1.2:81595216-81595235 MS.gene029447:intron 50.0%
CAGGAGGTCTATGCCTTTCA+AGG + chr1.2:81594808-81594827 MS.gene029447:CDS 50.0%
CCACCTTAACAGTTGACCAC+AGG + chr1.2:81594443-81594462 MS.gene029447:CDS 50.0%
CCTGTGGTCAACTGTTAAGG+TGG - chr1.2:81594446-81594465 None:intergenic 50.0%
CGCTTGGAGCAAGATCAAGT+TGG - chr1.2:81596355-81596374 None:intergenic 50.0%
CTTGATCTTGCTCCAAGCGA+GGG + chr1.2:81596356-81596375 MS.gene029447:CDS 50.0%
GAGGATGGAATACAGAACCG+AGG + chr1.2:81594245-81594264 MS.gene029447:intron 50.0%
TCTCCACAAGTTCGAAGCCA+TGG + chr1.2:81596405-81596424 MS.gene029447:CDS 50.0%
TGCTGCTATGCAGGTTGTCA+AGG + chr1.2:81595093-81595112 MS.gene029447:CDS 50.0%
TGTTGTGTGCTCTTCCTCGA+GGG + chr1.2:81594080-81594099 MS.gene029447:CDS 50.0%
TTGCCATGGCTTCGAACTTG+TGG - chr1.2:81596411-81596430 None:intergenic 50.0%
! AGGGAACGTGTTACTGCAAG+TGG + chr1.2:81594575-81594594 MS.gene029447:CDS 50.0%
! CAAGTGGAGGTGAAGTTGGT+AGG + chr1.2:81594591-81594610 MS.gene029447:CDS 50.0%
! CTTGAAAGGCATAGACCTCC+TGG - chr1.2:81594810-81594829 None:intergenic 50.0%
! GAACGTGTTACTGCAAGTGG+AGG + chr1.2:81594578-81594597 MS.gene029447:CDS 50.0%
! GGTGATCCTTTTGTCCCCAT+AGG + chr1.2:81595548-81595567 MS.gene029447:intron 50.0%
AATCCAGCAACCAACGCCCT+AGG - chr1.2:81594136-81594155 None:intergenic 55.0%
ATGGAGGGAAAACGGCCTAG+TGG + chr1.2:81596473-81596492 MS.gene029447:CDS 55.0%
CAAGTTCGGCAGGCAAACCA+CGG - chr1.2:81595075-81595094 None:intergenic 55.0%
CTGATTGTCAGCGTGTTCCC+GGG + chr1.2:81593843-81593862 MS.gene029447:CDS 55.0%
CTGGCAGCAAAATCTTGCCG+TGG + chr1.2:81595055-81595074 MS.gene029447:CDS 55.0%
GCAAGCTTTACCTAGGGCGT+TGG + chr1.2:81594123-81594142 MS.gene029447:CDS 55.0%
GGTAGGCTTAGCATTGTCGG+AGG + chr1.2:81594608-81594627 MS.gene029447:CDS 55.0%
GTGTTGTGTGCTCTTCCTCG+AGG + chr1.2:81594079-81594098 MS.gene029447:CDS 55.0%
TGCATAGCAGCAAGTTCGGC+AGG - chr1.2:81595085-81595104 None:intergenic 55.0%
! AGATTGGTCCCCTTCGATGC+TGG + chr1.2:81594784-81594803 MS.gene029447:intron 55.0%
!! TAGCATTGTCGGAGGTGCTG+AGG + chr1.2:81594616-81594635 MS.gene029447:CDS 55.0%
!! TGATCGGTGGACTGTGACAG+TGG + chr1.2:81594369-81594388 MS.gene029447:CDS 55.0%
!! TGCCGAACTTGCTGCTATGC+AGG + chr1.2:81595084-81595103 MS.gene029447:CDS 55.0%
!! TTACCTAGGGCGTTGGTTGC+TGG + chr1.2:81594130-81594149 MS.gene029447:CDS 55.0%
ATGATGCCGCCTCCCTTCAC+CGG - chr1.2:81593693-81593712 None:intergenic 60.0%
GTGCTCTTCCTCGAGGGCTT+GGG + chr1.2:81594086-81594105 MS.gene029447:CDS 60.0%
TGGACGGATATGCCCTCGCT+TGG - chr1.2:81596371-81596390 None:intergenic 60.0%
TGTGCTCTTCCTCGAGGGCT+TGG + chr1.2:81594085-81594104 MS.gene029447:CDS 60.0%
! ACCTCCTGGCCAGCATCGAA+GGG - chr1.2:81594796-81594815 None:intergenic 60.0%
AGGTGGTCACAGCACCACCC+TGG - chr1.2:81594429-81594448 None:intergenic 65.0%
GGTGGTCACAGCACCACCCT+GGG - chr1.2:81594428-81594447 None:intergenic 65.0%
! CCTCCTGGCCAGCATCGAAG+GGG - chr1.2:81594795-81594814 None:intergenic 65.0%
! GACCTCCTGGCCAGCATCGA+AGG - chr1.2:81594797-81594816 None:intergenic 65.0%
! GAGGGCATATCCGTCCACGC+AGG + chr1.2:81596374-81596393 MS.gene029447:CDS 65.0%
ATGCCGCCTCCCTTCACCGG+AGG - chr1.2:81593690-81593709 None:intergenic 70.0%
CCCCTTCGATGCTGGCCAGG+AGG + chr1.2:81594792-81594811 MS.gene029447:CDS 70.0%
GAGGGCTTGGGCGAGACGAG+TGG + chr1.2:81594098-81594117 MS.gene029447:CDS 70.0%
GGTCCCCTTCGATGCTGGCC+AGG + chr1.2:81594789-81594808 MS.gene029447:CDS 70.0%
TCGTCTCGCCCAAGCCCTCG+AGG - chr1.2:81594097-81594116 None:intergenic 70.0%
TGGCCTCCGGTGAAGGGAGG+CGG + chr1.2:81593684-81593703 MS.gene029447:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 81593683 81596511 81593683 ID=MS.gene029447
chr1.2 mRNA 81593683 81596511 81593683 ID=MS.gene029447.t1;Parent=MS.gene029447
chr1.2 exon 81593683 81593895 81593683 ID=MS.gene029447.t1.exon1;Parent=MS.gene029447.t1
chr1.2 CDS 81593683 81593895 81593683 ID=cds.MS.gene029447.t1;Parent=MS.gene029447.t1
chr1.2 exon 81594016 81594187 81594016 ID=MS.gene029447.t1.exon2;Parent=MS.gene029447.t1
chr1.2 CDS 81594016 81594187 81594016 ID=cds.MS.gene029447.t1;Parent=MS.gene029447.t1
chr1.2 exon 81594332 81594485 81594332 ID=MS.gene029447.t1.exon3;Parent=MS.gene029447.t1
chr1.2 CDS 81594332 81594485 81594332 ID=cds.MS.gene029447.t1;Parent=MS.gene029447.t1
chr1.2 exon 81594574 81594637 81594574 ID=MS.gene029447.t1.exon4;Parent=MS.gene029447.t1
chr1.2 CDS 81594574 81594637 81594574 ID=cds.MS.gene029447.t1;Parent=MS.gene029447.t1
chr1.2 exon 81594786 81594893 81594786 ID=MS.gene029447.t1.exon5;Parent=MS.gene029447.t1
chr1.2 CDS 81594786 81594893 81594786 ID=cds.MS.gene029447.t1;Parent=MS.gene029447.t1
chr1.2 exon 81594989 81595114 81594989 ID=MS.gene029447.t1.exon6;Parent=MS.gene029447.t1
chr1.2 CDS 81594989 81595114 81594989 ID=cds.MS.gene029447.t1;Parent=MS.gene029447.t1
chr1.2 exon 81595219 81595454 81595219 ID=MS.gene029447.t1.exon7;Parent=MS.gene029447.t1
chr1.2 CDS 81595219 81595454 81595219 ID=cds.MS.gene029447.t1;Parent=MS.gene029447.t1
chr1.2 exon 81596292 81596511 81596292 ID=MS.gene029447.t1.exon8;Parent=MS.gene029447.t1
chr1.2 CDS 81596292 81596511 81596292 ID=cds.MS.gene029447.t1;Parent=MS.gene029447.t1
Gene Sequence

>MS.gene029447

ATGGCCTCCGGTGAAGGGAGGCGGCATCATCATCATGATCTTGTACCTCTTGCTGCATTGCTTAAGAGAGAGATGAAAAGTGAGAAGATGGAGAAGCCTACTGTAAGAATTGGTCAAGCTGCTCAATCTAAGAAAGGGGAGGATTACTTTTTAATTAAGACTGATTGTCAGCGTGTTCCCGGGAACTCTTCAACGTCGTTTTCTGTATTCGCGGTATATTTCACTATTTCAATTTCAGATTATATATTTACTCCTTTTGAACTACATGACATAATAGCTTTGCTAGCTGTCCGAGATTGCTTTCATTTTTTACTCACTTCTTCTGGTTCACAGATCTTTGATGGACACAATGGAAATGCTGCTGCTGTTTATACTAAGGAAAATTTGCTAAATCATGTGTTGTGTGCTCTTCCTCGAGGGCTTGGGCGAGACGAGTGGTTGCAAGCTTTACCTAGGGCGTTGGTTGCTGGATTTGTTAAGACTGATAAGGAATTTCAGAGCAGAGGTGTGTGGACTCTCGCTCGCTTTTATTCTTTTTTGTTGATAGAAAGCTATTCTTATTGAGGATGGAATACAGAACCGAGGAATAGGAATTGATATGTTATTCTTAACTTATTTACGAGTTCTAACCTAATCTAATTTTGTCTAGGAGAAACTTCTGGAACCACAGCCACATTTGTGATAGTTGATCGGTGGACTGTGACAGTGGCATCAGTTGGAGATTCTCGTTGTATACTAGATACCCAGGGTGGTGCTGTGACCACCTTAACAGTTGACCACAGGCTAGAAGAGAATATTGAAGAGTAAGCTAATTTTGATATTTATCTCTAAGGCCGCGTTAGTTAACTTTTTCTGTATTGCTCATGGTCATGAGTTGAACTGTATATACAGGAGGGAACGTGTTACTGCAAGTGGAGGTGAAGTTGGTAGGCTTAGCATTGTCGGAGGTGCTGAGGTCAGCATATTATGTTGTAATTATACTTTTTCCATCCTAAAATGGAAATTAGGAAGAAGATAGCTTACAACTGGTTTTCTAGCATCTTATCAAACGGCTTTCGTTTAGCTTTTCCTTGTTTAAAATTTTTAGTTTTGAATAATTGCAGATTGGTCCCCTTCGATGCTGGCCAGGAGGTCTATGCCTTTCAAGGTCAATAGGAGACATGGATGTTGGAGAGTTTATAGTTCCAATACCTTATGTCAAACAAGTGAAGGTATAATCTGCTTCTAGATAACCTTTCCTTATTTCCGTCGTTGATTATAAGGTCTTTGTTCAGGATAAAAACTTACACTTTGTCGTGGATTTTAGCTATCAAAAGCTGGTGGGAGACTTATAATTGCTTCTGATGGAATATGGGATGCTGTATCATCAGAACTGGCAGCAAAATCTTGCCGTGGTTTGCCTGCCGAACTTGCTGCTATGCAGGTTGTCAAGGTAATATGCTCCACTATGCTATGCTTGCTGTAGTTGGTGATTTTAAGCCAAATCATGTTGCGAAGTTGACATTTCTCGTGCAACGTATTCCTACTGTTATTCAGGAAGCCCTAAGAACAAGAGGGTTAAAGGATGATACAACATGTATAGTAGTTGACATAATCCCACCTGATAACGAATTGCCACTAACACCTCCCCCAAAAAAGCGGAATAAGCTGAAAGATTTTTTTTCGTTCAAGAAAAGGTCCCGTGATACTGCTGGTAAGCTGTCGAAGAAGCTTTCGGCTATAAATATAGTGGAAGAATTGTTTGAAGAAGGATCAGCAATGCTTGCTGAAAGGTAATATTTTATTATCTTTTATAGACATAAGTTTTTAATTGATGAATACCGAAAAATCTTCTGAATATTCCCTTTATATTGTTTTCCTTCTATGGTGATCCTTTTGTCCCCATAGGATTTCTGTCATTACAAATGGAGGTTAATTCATAGGTTGGTACATTAACTGTTCTTTTAATAACAACAAGGGACTGAAGCTAGGGGAGTGTAATCTTTAATAATATAGAGTGGAATCTGAGCTTGGAATATTGGTAACTGGTTAAATGGTAGACTTTGAAGATTTCACATTTAGGATCTAGATCAAGGCTTATTCAAATATTGGTTGGGAGTATAAAAAAACTCAACATTAAGGATTCTTAATATAAGGATGCGTTGTCATTTCTCAATTACACATATATATAACTATATGCAGCAAGTTTTACGTATCAAATAGATAAGGTTTTTGTATAGACTGGCGTCAATATATTCATTTGTTTCTCGATTCCTACTTAGGATTCTATGCAAGCAAATTTGTTCTTGCCTAGAAGCATTATAAGCTTGTAATATTTTGTTAACTGGTTTTCTTGTTGATTGAGACGTACTCAAGGACAAATTTCTATTCATAATCCTTTAAATATTAATGAAAGAGAAATGTTGTTTTGACAACATTGTTGTTGTCCGGTGTAGATACTATTTCACTTTTTAATTAGTTTTTTTTCTCTCTCCAAGTCACATTAATAGTTTTAAAGGATGCAAGATTATACGGTGTCAAATTTATTAGGTTCAAATAACATCACTCTTTATGAATTATGAAACTATTCTGGTTCACAAAGATTTGATACCAATTAATGTGTCCTCCAGATTAGGAAATGATGAAAACTCGGGGCAATCAACATCTGGTCTTTTTGTCTGTGCTGTATGCCAACTTGATCTTGCTCCAAGCGAGGGCATATCCGTCCACGCAGGTTCAATTTTCTCCACAAGTTCGAAGCCATGGCAAGGTCCTTTTCTATGTTGTGATTGTCGCGATAAGAAGGATGCAATGGAGGGAAAACGGCCTAGTGGAGTGAAAGTGTCATAG
Protein sequence

>MS.gene029447.t1

MASGEGRRHHHHDLVPLAALLKREMKSEKMEKPTVRIGQAAQSKKGEDYFLIKTDCQRVPGNSSTSFSVFAIFDGHNGNAAAVYTKENLLNHVLCALPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVTTLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLIIASDGIWDAVSSELAAKSCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPLTPPPKKRNKLKDFFSFKKRSRDTAGKLSKKLSAINIVEELFEEGSAMLAERLGNDENSGQSTSGLFVCAVCQLDLAPSEGISVHAGSIFSTSSKPWQGPFLCCDCRDKKDAMEGKRPSGVKVS