AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061932


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061932.t1 MTR_7g100430 98.783 575 7 0 11 585 1 575 0.0 1161
MS.gene061932.t1 MTR_1g115575 73.567 541 136 4 51 585 47 586 0.0 800
MS.gene061932.t1 MTR_2g096190 44.767 516 245 7 60 558 10 502 4.99e-127 384
MS.gene061932.t1 MTR_4g062100 44.618 511 245 8 66 561 19 506 5.37e-126 382
MS.gene061932.t1 MTR_7g117620 42.515 501 257 4 65 555 30 509 7.21e-116 356
MS.gene061932.t1 MTR_1g032100 43.162 468 253 4 130 585 53 519 3.55e-115 353
MS.gene061932.t1 MTR_7g100390 40.262 534 281 6 71 587 3 515 9.01e-107 332
MS.gene061932.t1 MTR_8g105260 40.252 477 264 6 130 592 60 529 4.82e-106 330
MS.gene061932.t1 MTR_2g101310 26.854 499 289 12 167 592 135 630 3.06e-36 144
MS.gene061932.t1 MTR_2g101310 25.991 227 132 4 122 313 24 249 1.41e-14 77.4
MS.gene061932.t1 MTR_2g101320 25.527 427 280 10 134 524 139 563 9.75e-23 103
MS.gene061932.t1 MTR_2g101320 27.053 207 147 3 167 369 135 341 5.53e-15 78.6
MS.gene061932.t1 MTR_2g101320 25.207 242 157 5 116 345 18 247 5.85e-14 75.5
MS.gene061932.t1 MTR_1g069110 25.916 382 242 8 172 522 18 389 7.59e-22 99.4
MS.gene061932.t1 MTR_2g101310 25.613 367 203 9 167 463 135 501 1.82e-19 92.4
MS.gene061932.t1 MTR_2g101310 25.991 227 132 4 122 313 24 249 2.84e-14 75.9
MS.gene061932.t1 MTR_3g105650 24.208 442 272 16 134 571 38 420 4.70e-18 87.4
MS.gene061932.t1 MTR_5g043640 34.463 177 111 4 134 308 20 193 1.05e-16 80.5
MS.gene061932.t1 MTR_8g073260 25.201 373 206 14 79 447 8 311 1.76e-16 82.8
MS.gene061932.t1 MTR_5g085810 24.286 420 256 14 172 534 273 687 3.12e-16 82.8
MS.gene061932.t1 MTR_8g080080 30.918 207 123 6 172 358 189 395 1.73e-15 80.5
MS.gene061932.t1 MTR_8g080080 26.007 273 170 10 75 326 133 394 2.35e-12 70.5
MS.gene061932.t1 MTR_6g027840 31.000 200 133 4 126 325 170 364 2.67e-14 76.3
MS.gene061932.t1 MTR_6g027840 30.918 207 135 6 121 324 129 330 2.56e-13 73.2
MS.gene061932.t1 MTR_3g058550 30.539 167 98 3 128 276 2 168 6.20e-14 71.6
MS.gene061932.t1 MTR_5g085480 26.408 284 171 10 75 324 86 365 7.48e-14 75.1
MS.gene061932.t1 MTR_2g096760 30.332 211 125 5 130 324 11 215 2.66e-13 72.8
MS.gene061932.t1 MTR_1g089180 28.926 242 134 8 129 342 213 444 4.02e-13 72.4
MS.gene061932.t1 MTR_8g040930 22.951 366 184 11 156 482 12 318 3.97e-12 68.6
MS.gene061932.t1 MTR_8g041240 22.951 366 184 11 156 482 12 318 3.97e-12 68.6
MS.gene061932.t1 MTR_1g112830 29.730 185 124 4 124 306 160 340 5.96e-12 68.9
MS.gene061932.t1 MTR_3g055310 27.143 140 95 2 409 541 301 440 6.48e-12 68.6
MS.gene061932.t1 MTR_3g055310 27.143 140 95 2 409 541 329 468 7.62e-12 68.2
MS.gene061932.t1 MTR_3g055310 27.143 140 95 2 409 541 327 466 8.28e-12 68.2
MS.gene061932.t1 MTR_3g051060 29.518 166 100 3 128 276 54 219 8.87e-12 68.6
MS.gene061932.t1 MTR_3g055310 27.068 133 90 2 416 541 256 388 9.12e-12 67.8
MS.gene061932.t1 MTR_3g055310 27.143 140 95 2 409 541 186 325 1.02e-11 67.0
MS.gene061932.t1 MTR_3g055310 27.143 140 95 2 409 541 354 493 1.08e-11 67.8
MS.gene061932.t1 MTR_8g467780 23.373 338 193 10 81 400 10 299 1.40e-11 67.4
MS.gene061932.t1 MTR_5g026800 33.557 149 95 4 164 312 8 152 3.35e-11 64.7
MS.gene061932.t1 MTR_8g069880 24.074 378 204 14 134 482 40 363 8.25e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061932.t1 AT3G09550 72.806 581 143 4 21 587 28 607 0.0 822
MS.gene061932.t1 AT3G09550 72.806 581 143 4 21 587 21 600 0.0 822
MS.gene061932.t1 AT3G09550 72.806 581 143 4 21 587 21 600 0.0 822
MS.gene061932.t1 AT3G12360 72.119 538 147 3 50 585 47 583 0.0 774
MS.gene061932.t1 AT3G12360 72.119 538 147 3 50 585 35 571 0.0 773
MS.gene061932.t1 AT2G31820 42.065 523 268 5 75 583 148 649 4.05e-122 376
MS.gene061932.t1 AT5G60070 44.403 536 249 13 63 572 17 529 1.21e-118 363
MS.gene061932.t1 AT1G07710 43.585 530 259 6 66 577 15 522 1.87e-117 360
MS.gene061932.t1 AT1G07710 43.585 530 259 6 66 577 15 522 1.87e-117 360
MS.gene061932.t1 AT1G05640 42.366 524 268 7 75 583 110 614 4.34e-113 351
MS.gene061932.t1 AT2G01680 39.960 503 284 6 104 590 28 528 1.58e-112 347
MS.gene061932.t1 AT5G02620 40.237 507 273 6 66 558 5 495 1.18e-103 323
MS.gene061932.t1 AT5G02620 40.237 507 273 6 66 558 5 495 1.18e-103 323
MS.gene061932.t1 AT5G02620 40.237 507 273 6 66 558 5 495 1.18e-103 323
MS.gene061932.t1 AT5G02620 38.491 530 273 7 66 558 5 518 2.93e-98 310
MS.gene061932.t1 AT5G02620 38.491 530 273 7 66 558 5 518 2.93e-98 310
MS.gene061932.t1 AT1G34050 26.230 488 247 14 172 556 58 535 1.54e-33 135
MS.gene061932.t1 AT1G10340 24.764 529 315 13 78 554 37 534 5.00e-32 131
MS.gene061932.t1 AT1G10340 24.578 533 315 13 78 554 37 538 5.46e-32 131
MS.gene061932.t1 AT2G24600 25.000 548 313 18 78 559 37 552 2.62e-30 126
MS.gene061932.t1 AT2G24600 25.000 548 313 18 78 559 37 552 2.62e-30 126
MS.gene061932.t1 AT4G03500 24.111 506 335 14 79 543 103 600 1.44e-29 124
MS.gene061932.t1 AT4G03500 24.111 506 335 14 79 543 80 577 1.62e-29 124
MS.gene061932.t1 AT4G03500 24.111 506 335 14 79 543 80 577 1.62e-29 124
MS.gene061932.t1 AT5G54710 24.414 512 322 15 113 575 82 577 1.90e-28 120
MS.gene061932.t1 AT5G54710 25.197 508 323 16 113 575 127 622 3.26e-28 120
MS.gene061932.t1 AT1G03670 26.256 438 285 8 137 564 184 593 3.96e-25 110
MS.gene061932.t1 AT5G50140 23.387 496 321 12 132 571 26 518 1.38e-23 105
MS.gene061932.t1 AT4G03490 25.701 428 274 12 137 553 182 576 4.47e-22 101
MS.gene061932.t1 AT4G03490 25.829 422 269 12 137 547 182 570 4.53e-22 100
MS.gene061932.t1 AT4G03490 25.829 422 269 12 137 547 172 560 5.80e-22 100
MS.gene061932.t1 AT4G03470 25.098 510 336 15 52 542 138 620 2.80e-21 98.6
MS.gene061932.t1 AT5G54700 25.067 375 211 9 205 545 4 342 7.68e-21 96.3
MS.gene061932.t1 AT4G03460 24.762 420 271 9 130 535 158 546 1.94e-20 95.9
MS.gene061932.t1 AT4G03460 24.762 420 271 9 130 535 190 578 2.77e-20 95.5
MS.gene061932.t1 AT5G54700 27.160 324 189 10 259 560 20 318 6.30e-20 92.0
MS.gene061932.t1 AT4G14390 23.554 484 331 12 80 538 168 637 3.05e-19 92.4
MS.gene061932.t1 AT4G14390 23.602 483 331 12 80 538 149 617 2.09e-18 89.7
MS.gene061932.t1 AT4G14390 27.805 205 132 6 76 278 227 417 8.24e-12 68.6
MS.gene061932.t1 AT3G18670 24.224 483 295 16 133 544 84 566 2.16e-18 89.4
MS.gene061932.t1 AT4G14390 23.602 483 331 12 80 538 168 636 2.63e-18 89.4
MS.gene061932.t1 AT4G14390 27.805 205 132 6 76 278 246 436 7.43e-12 68.9
MS.gene061932.t1 AT2G03430 35.057 174 108 4 137 308 16 186 3.62e-18 84.7
MS.gene061932.t1 AT4G03490 25.139 541 305 18 70 547 9 512 9.88e-18 87.4
MS.gene061932.t1 AT4G03490 25.046 547 310 18 70 553 19 528 1.73e-17 86.7
MS.gene061932.t1 AT4G03480 25.429 350 229 7 165 484 312 659 1.02e-16 84.3
MS.gene061932.t1 AT4G03480 25.429 350 229 7 165 484 309 656 1.13e-16 84.3
MS.gene061932.t1 AT1G14500 24.625 333 177 8 165 477 68 346 1.75e-16 82.8
MS.gene061932.t1 AT5G15500 29.557 203 122 5 135 319 40 239 1.79e-16 82.8
MS.gene061932.t1 AT5G51160 26.990 289 168 7 165 447 44 295 2.21e-15 79.3
MS.gene061932.t1 AT2G24600 23.776 429 242 13 78 452 37 434 4.75e-15 78.6
MS.gene061932.t1 AT2G24600 23.776 429 242 13 78 452 37 434 4.75e-15 78.6
MS.gene061932.t1 AT4G10720 22.727 440 272 15 135 562 39 422 5.46e-15 78.2
MS.gene061932.t1 AT4G10720 23.714 350 223 9 135 479 39 349 4.50e-14 75.1
MS.gene061932.t1 AT4G03450 25.594 379 233 11 130 490 184 531 5.31e-14 75.5
MS.gene061932.t1 AT4G03450 25.594 379 233 11 130 490 184 531 9.01e-14 74.7
MS.gene061932.t1 AT4G14390 24.870 386 257 10 80 445 149 521 1.70e-13 73.6
MS.gene061932.t1 AT4G14390 27.805 205 132 6 76 278 227 417 1.77e-11 67.4
MS.gene061932.t1 AT4G03440 24.752 404 253 13 172 555 317 689 5.83e-13 72.4
MS.gene061932.t1 AT4G03440 24.752 404 253 13 172 555 310 682 5.95e-13 72.4
MS.gene061932.t1 AT4G03440 24.752 404 253 13 172 555 310 682 5.95e-13 72.4
MS.gene061932.t1 AT3G18670 28.169 142 96 1 409 544 480 621 9.80e-13 71.6
MS.gene061932.t1 AT3G04710 28.906 256 151 9 53 290 30 272 1.00e-12 70.9
MS.gene061932.t1 AT3G04710 28.906 256 151 9 53 290 254 496 1.24e-12 71.2
MS.gene061932.t1 AT2G14255 28.270 237 156 7 135 362 26 257 2.29e-12 70.1
MS.gene061932.t1 AT3G04710 28.516 256 151 9 53 290 30 271 2.35e-11 66.6
MS.gene061932.t1 AT4G19150 32.143 140 92 3 172 311 20 156 6.85e-11 63.2

Find 0 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTATAGAAAAAAAATTG+TGG - 51431:74701-74720 MS.gene061932:CDS 15.0%
!! ATATTGTCAATATATTGTTA+GGG - 51431:75163-75182 MS.gene061932:CDS 15.0%
!! TGTTATATTACTCAAAATAA+AGG + 51431:75490-75509 None:intergenic 15.0%
!! CAAGAAAAAATATGTAAAAC+AGG - 51431:74288-74307 MS.gene061932:intron 20.0%
!! GACTATTAAATAGCATAAAT+TGG + 51431:76379-76398 None:intergenic 20.0%
!! GATATTGTCAATATATTGTT+AGG - 51431:75162-75181 MS.gene061932:CDS 20.0%
!! GTTATATATATTGTTGTGAA+TGG - 51431:74930-74949 MS.gene061932:CDS 20.0%
!! GTTTATAGAGAAAAAAAAGA+TGG - 51431:76486-76505 MS.gene061932:CDS 20.0%
!!! TTTACATATTTTTTCTTGCT+GGG + 51431:74286-74305 None:intergenic 20.0%
!!! TTTTACATATTTTTTCTTGC+TGG + 51431:74287-74306 None:intergenic 20.0%
! AAAACAAACAAGAATGTGAA+TGG - 51431:75809-75828 MS.gene061932:CDS 25.0%
! AAACAAACAAGAATGTGAAT+GGG - 51431:75810-75829 MS.gene061932:CDS 25.0%
! AATAGCATTAGAGATGAAAA+AGG + 51431:76008-76027 None:intergenic 25.0%
! ATAAACAAAAGAAACCTTAC+AGG + 51431:76472-76491 None:intergenic 25.0%
! ATATATATTGTTGTGAATGG+TGG - 51431:74933-74952 MS.gene061932:CDS 25.0%
! GTCATTAACTTCATTAACAA+TGG + 51431:74467-74486 None:intergenic 25.0%
! GTTAATGAAGTTAATGACTT+GGG - 51431:74469-74488 MS.gene061932:CDS 25.0%
! TGTTAATGAAGTTAATGACT+TGG - 51431:74468-74487 MS.gene061932:CDS 25.0%
! TTCAAATAACTGTTGTTAGA+GGG - 51431:76059-76078 MS.gene061932:intron 25.0%
! TTTAAAAGCGAAAGAACTAA+GGG - 51431:76541-76560 MS.gene061932:CDS 25.0%
!! GAAAAAAAAGATGGCTTTTA+TGG - 51431:76495-76514 MS.gene061932:CDS 25.0%
AAAATCATAACCTGACTGTT+TGG + 51431:74877-74896 None:intergenic 30.0%
AAATATGTAAAACAGGTCAC+CGG - 51431:74295-74314 MS.gene061932:intron 30.0%
ATCTTATGATCCTAGTCAAT+TGG - 51431:75080-75099 MS.gene061932:CDS 30.0%
ATCTTTCTTAATCTGAGTCA+TGG + 51431:75762-75781 None:intergenic 30.0%
CTTATTTCCATAAGCTCTTT+AGG - 51431:74746-74765 MS.gene061932:CDS 30.0%
GTTACATCTTCTTAAAAGGT+TGG - 51431:76578-76597 MS.gene061932:CDS 30.0%
GTTCAAATAACTGTTGTTAG+AGG - 51431:76058-76077 MS.gene061932:intron 30.0%
GTTTAAAAGCGAAAGAACTA+AGG - 51431:76540-76559 MS.gene061932:CDS 30.0%
TCAAATAACTGTTGTTAGAG+GGG - 51431:76060-76079 MS.gene061932:intron 30.0%
TCCAAAATCTCTTCTGATAT+TGG + 51431:75662-75681 None:intergenic 30.0%
TGTCAATATATTGTTAGGGA+AGG - 51431:75167-75186 MS.gene061932:CDS 30.0%
TTATTTGACGAACGTTGAAA+AGG - 51431:76445-76464 MS.gene061932:CDS 30.0%
TTTACAAGATAGTCCTTCTT+TGG + 51431:74566-74585 None:intergenic 30.0%
! ATGGCTTTTATGGAAGTAAA+TGG - 51431:76505-76524 MS.gene061932:CDS 30.0%
! GAGATTGATGATCAAATGAT+GGG - 51431:74391-74410 MS.gene061932:intron 30.0%
! TATTGCACTTTTCACTTCAT+TGG - 51431:76024-76043 MS.gene061932:intron 30.0%
! TCCAATATCAGAAGAGATTT+TGG - 51431:75658-75677 MS.gene061932:CDS 30.0%
! TCTTCAATGAGTATTGTCAT+AGG - 51431:74657-74676 MS.gene061932:CDS 30.0%
! TGAGATTGATGATCAAATGA+TGG - 51431:74390-74409 MS.gene061932:intron 30.0%
!! ACCTTTTAAGAAGATGTAAC+TGG + 51431:76578-76597 None:intergenic 30.0%
AAAGAGAAGATCTCAAGGAA+TGG - 51431:76310-76329 MS.gene061932:CDS 35.0%
AAGGACTCACTTATTCGTTA+TGG - 51431:75686-75705 MS.gene061932:CDS 35.0%
AATCCTTGTTACTGTTGTAG+GGG - 51431:76210-76229 MS.gene061932:CDS 35.0%
AGGTGATCAATAAGATGATG+TGG - 51431:76110-76129 MS.gene061932:intron 35.0%
ATGAAGTGCATTCTTTCCAT+TGG + 51431:75118-75137 None:intergenic 35.0%
CAATCCTTGTTACTGTTGTA+GGG - 51431:76209-76228 MS.gene061932:CDS 35.0%
CATGACAACTAATGTCTTGA+TGG + 51431:76608-76627 None:intergenic 35.0%
GCAGCATCTTATATAGTAGT+TGG - 51431:76166-76185 MS.gene061932:intron 35.0%
GCCAGTTACATCTTCTTAAA+AGG - 51431:76574-76593 MS.gene061932:CDS 35.0%
GTTTCTTCAGATGTAGTCAA+AGG - 51431:76665-76684 MS.gene061932:CDS 35.0%
TAGCTATCCTAAAGAGCTTA+TGG + 51431:74756-74775 None:intergenic 35.0%
TATGGAAGTAAATGGCTTCT+TGG - 51431:76513-76532 MS.gene061932:CDS 35.0%
TGACAATATCAACATATCCC+TGG + 51431:75152-75171 None:intergenic 35.0%
TTCATGGCGTAATTCTGATT+CGG - 51431:76339-76358 MS.gene061932:CDS 35.0%
TTGCATATTGCAGCAAATCA+AGG - 51431:74607-74626 MS.gene061932:CDS 35.0%
! ACGTTTTTATCCAAACAGTC+AGG - 51431:74864-74883 MS.gene061932:CDS 35.0%
!! AGAAGAGATTTTGGAGATCA+AGG - 51431:75667-75686 MS.gene061932:CDS 35.0%
!! TGATTTGCTGCAATATGCAA+TGG + 51431:74607-74626 None:intergenic 35.0%
AACGTTGAAAAGGACCTGTA+AGG - 51431:76455-76474 MS.gene061932:CDS 40.0%
AAGAACTAAGGGAGCCAAAT+CGG - 51431:76552-76571 MS.gene061932:CDS 40.0%
ACAAGATAGTCCTTCTTTGG+TGG + 51431:74563-74582 None:intergenic 40.0%
AGAAACCACAGTTACAGAGT+TGG + 51431:75885-75904 None:intergenic 40.0%
AGCCAGAATATTCCTAACAG+CGG + 51431:74371-74390 None:intergenic 40.0%
AGTGTAACTGCAAAACCATG+TGG - 51431:75417-75436 MS.gene061932:intron 40.0%
ATCCTTGTTACTGTTGTAGG+GGG - 51431:76211-76230 MS.gene061932:CDS 40.0%
ATGCTGAAGTTGCGGATATA+AGG - 51431:74437-74456 MS.gene061932:intron 40.0%
CAAGGAATGGAACACATTCA+TGG - 51431:76323-76342 MS.gene061932:CDS 40.0%
CTAGCTATCTCCAATTGACT+AGG + 51431:75093-75112 None:intergenic 40.0%
CTATCTTGTAAAAACCGCTC+TGG - 51431:74574-74593 MS.gene061932:CDS 40.0%
GCAATCCTTGTTACTGTTGT+AGG - 51431:76208-76227 MS.gene061932:CDS 40.0%
GGAAGAAAGAGAAGATCTCA+AGG - 51431:76305-76324 MS.gene061932:CDS 40.0%
GGAGATAAAGTCTGAGAGAA+GGG - 51431:76081-76100 MS.gene061932:intron 40.0%
TATAACTAGCGAACTCCACA+TGG + 51431:75435-75454 None:intergenic 40.0%
TCTCTTTCTTCCTCACTCTT+CGG + 51431:76297-76316 None:intergenic 40.0%
TCTTCAGATGTAGTCAAAGG+CGG - 51431:76668-76687 MS.gene061932:CDS 40.0%
TGAGTTTGATGCTGAAGTTG+CGG - 51431:74429-74448 MS.gene061932:intron 40.0%
TGCTGCAACAAATGAAACTG+AGG + 51431:76152-76171 None:intergenic 40.0%
TTGGAGATAGCTAGATCCAA+TGG - 51431:75099-75118 MS.gene061932:CDS 40.0%
! AGTCCTTCTTTGGTGGTATA+AGG + 51431:74556-74575 None:intergenic 40.0%
! GCAAATGTCTTGATTAGCTC+TGG + 51431:74991-75010 None:intergenic 40.0%
! GTCCTTCTTTGGTGGTATAA+GGG + 51431:74555-74574 None:intergenic 40.0%
! TGTTTTGTGGTCTCTTGTGA+GGG + 51431:75615-75634 None:intergenic 40.0%
!! ACTTTTCACTTCATTGGCTG+TGG - 51431:76030-76049 MS.gene061932:intron 40.0%
!! ATTGTAATGGGTGGTGTTCT+TGG - 51431:76235-76254 MS.gene061932:CDS 40.0%
!! GGTTTCTGTGCTATTTGCAA+CGG - 51431:75898-75917 MS.gene061932:intron 40.0%
!! TCTTGATTAGCTCTGGATCA+TGG + 51431:74984-75003 None:intergenic 40.0%
AAAACGACCTTTCTCAGCTG+CGG + 51431:74512-74531 None:intergenic 45.0%
AAGTTGCTTCTTGCTGCTGA+TGG - 51431:75273-75292 MS.gene061932:intron 45.0%
ACTTCATTTATCTGCACGCC+AGG - 51431:75131-75150 MS.gene061932:CDS 45.0%
CAAAACACCTCTTGACCTTG+CGG - 51431:75628-75647 MS.gene061932:CDS 45.0%
CAAAGGGGTTAACTGTGAAG+TGG - 51431:75248-75267 MS.gene061932:intron 45.0%
CAATGATCTCAACCAGCCAA+GGG - 51431:75721-75740 MS.gene061932:CDS 45.0%
CATTATCATGATCCCCACCA+GGG + 51431:75949-75968 None:intergenic 45.0%
CTCCCTTATACCACCAAAGA+AGG - 51431:74550-74569 MS.gene061932:CDS 45.0%
CTGGTGGGGATCATGATAAT+GGG - 51431:75948-75967 MS.gene061932:intron 45.0%
CTTCATTTATCTGCACGCCA+GGG - 51431:75132-75151 MS.gene061932:CDS 45.0%
GAAGATGTAACTGGCCGATT+TGG + 51431:76569-76588 None:intergenic 45.0%
GAATGTGAATGGGATTGCCA+AGG - 51431:75820-75839 MS.gene061932:CDS 45.0%
GCAATGGATCAAAACCAGAG+CGG + 51431:74591-74610 None:intergenic 45.0%
GCAGCAAATCAAGGTCACAA+AGG - 51431:74616-74635 MS.gene061932:CDS 45.0%
GCAGTATTGCCAAACTTGTC+AGG + 51431:75315-75334 None:intergenic 45.0%
GCCAGAATTGGAAATGACGA+GGG + 51431:74245-74264 None:intergenic 45.0%
GCTCGAAGGACTGATAAGAA+AGG - 51431:75201-75220 MS.gene061932:CDS 45.0%
GGAAATGACGAGGGATTTGT+TGG + 51431:74236-74255 None:intergenic 45.0%
GGACAAGAACTAGCTCCTTT+CGG - 51431:76708-76727 MS.gene061932:CDS 45.0%
GGGAGATAAAGTCTGAGAGA+AGG - 51431:76080-76099 MS.gene061932:intron 45.0%
GTCATGCTTCCTGACAAGTT+TGG - 51431:75303-75322 MS.gene061932:intron 45.0%
GTTGGAGTTGGAGACAAGAA+GGG + 51431:74218-74237 None:intergenic 45.0%
GTTGTAGGGGGGATTGTAAT+GGG - 51431:76223-76242 MS.gene061932:CDS 45.0%
TCCCTCGTCATTTCCAATTC+TGG - 51431:74241-74260 MS.gene061932:intron 45.0%
TCCTTGTTACTGTTGTAGGG+GGG - 51431:76212-76231 MS.gene061932:CDS 45.0%
TGCAACTCCTCTTGTATCTG+CGG - 51431:75020-75039 MS.gene061932:CDS 45.0%
TGCCAGAATTGGAAATGACG+AGG + 51431:74246-74265 None:intergenic 45.0%
TGCCGCTGTTAGGAATATTC+TGG - 51431:74366-74385 MS.gene061932:intron 45.0%
TGCTACCAACTCTGTAACTG+TGG - 51431:75877-75896 MS.gene061932:intron 45.0%
TGTTGGAGTTGGAGACAAGA+AGG + 51431:74219-74238 None:intergenic 45.0%
TGTTGTAGGGGGGATTGTAA+TGG - 51431:76222-76241 MS.gene061932:CDS 45.0%
TTGTATCTGCGGCTACAAGA+GGG - 51431:75031-75050 MS.gene061932:CDS 45.0%
! AGCTAGTTCTTGTCCGGTTA+TGG + 51431:76703-76722 None:intergenic 45.0%
! CTTTTTACCGCAGCTGAGAA+AGG - 51431:74502-74521 MS.gene061932:CDS 45.0%
! GAAAGGAGCTAGTTCTTGTC+CGG + 51431:76709-76728 None:intergenic 45.0%
! GTGTTTTGTGGTCTCTTGTG+AGG + 51431:75616-75635 None:intergenic 45.0%
! TTTCACTTCATTGGCTGTGG+TGG - 51431:76033-76052 MS.gene061932:intron 45.0%
!! ATATTGGAAGTGCTTCCGCA+AGG + 51431:75646-75665 None:intergenic 45.0%
!! TGATAATGGGATGGCTGTGA+TGG - 51431:75961-75980 MS.gene061932:intron 45.0%
!! TGGGGATCATGATAATGGGA+TGG - 51431:75952-75971 MS.gene061932:intron 45.0%
!!! CAAGGTCAAGAGGTGTTTTG+TGG + 51431:75628-75647 None:intergenic 45.0%
ACAAACGCCGCTTCATATGG+CGG - 51431:75224-75243 MS.gene061932:CDS 50.0%
ACCCTATTCCTCTCCACTTC+CGG - 51431:74187-74206 MS.gene061932:intron 50.0%
AGAGGAATAGGGTGGGTCTA+GGG + 51431:74180-74199 None:intergenic 50.0%
AGGACAAACGCCGCTTCATA+TGG - 51431:75221-75240 MS.gene061932:CDS 50.0%
ATGTAGCCACCAGGAAGAAG+AGG - 51431:75340-75359 MS.gene061932:intron 50.0%
CCAATGATCTCAACCAGCCA+AGG - 51431:75720-75739 MS.gene061932:CDS 50.0%
CCATTATCATGATCCCCACC+AGG + 51431:75950-75969 None:intergenic 50.0%
CCTGGTGGGGATCATGATAA+TGG - 51431:75947-75966 MS.gene061932:intron 50.0%
CCTTTGACCGCCATATGAAG+CGG + 51431:75234-75253 None:intergenic 50.0%
CGCTTCATATGGCGGTCAAA+GGG - 51431:75232-75251 MS.gene061932:CDS 50.0%
CTCAGCTGCGGTAAAAAGTG+CGG + 51431:74500-74519 None:intergenic 50.0%
CTTGTAGCCGCAGATACAAG+AGG + 51431:75030-75049 None:intergenic 50.0%
CTTGTATCTGCGGCTACAAG+AGG - 51431:75030-75049 MS.gene061932:CDS 50.0%
GAAGTGGAGAGGAATAGGGT+GGG + 51431:74187-74206 None:intergenic 50.0%
GCTTCATATGGCGGTCAAAG+GGG - 51431:75233-75252 MS.gene061932:CDS 50.0%
GTCTGAGAGAAGGGTTACAG+AGG - 51431:76090-76109 MS.gene061932:intron 50.0%
TAACAAGGATTGCAGCCCAC+AGG + 51431:76201-76220 None:intergenic 50.0%
TACCTCTACCCTCTTCTTCC+TGG + 51431:75352-75371 None:intergenic 50.0%
TCAGATGTAGTCAAAGGCGG+AGG - 51431:76671-76690 MS.gene061932:CDS 50.0%
TCCCCCCTACAACAGTAACA+AGG + 51431:76216-76235 None:intergenic 50.0%
TGTAGCCACCAGGAAGAAGA+GGG - 51431:75341-75360 MS.gene061932:intron 50.0%
! ACTTTTCACAGTCCCTGGTG+GGG - 51431:75934-75953 MS.gene061932:intron 50.0%
! CAAATGATGGGAACGCTCAG+TGG - 51431:74403-74422 MS.gene061932:intron 50.0%
! CACTTTTCACAGTCCCTGGT+GGG - 51431:75933-75952 MS.gene061932:intron 50.0%
! CCTTGGCTGGTTGAGATCAT+TGG + 51431:75723-75742 None:intergenic 50.0%
!! CTCGGTGTCATTATGACGAC+CGG + 51431:74317-74336 None:intergenic 50.0%
!! GACGAGGGATTTGTTGGAGT+TGG + 51431:74230-74249 None:intergenic 50.0%
!! TCTTGTGAGGGCATTCGCAT+TGG + 51431:75603-75622 None:intergenic 50.0%
AAGAAGGGCTTTGCCGGAAG+TGG + 51431:74203-74222 None:intergenic 55.0%
AGTGCTTCCGCAAGGTCAAG+AGG + 51431:75638-75657 None:intergenic 55.0%
ATGAATGGCCGTCGTGGGAA+GGG + 51431:74106-74125 None:intergenic 55.0%
ATTACTCCCCCTTCCCACGA+CGG - 51431:74095-74114 MS.gene061932:CDS 55.0%
CACCAGGAAGAAGAGGGTAG+AGG - 51431:75347-75366 MS.gene061932:intron 55.0%
CCAAACGTCACCGAAGAGTG+AGG - 51431:76284-76303 MS.gene061932:CDS 55.0%
CCGCTTCATATGGCGGTCAA+AGG - 51431:75231-75250 MS.gene061932:CDS 55.0%
CCTCACTCTTCGGTGACGTT+TGG + 51431:76287-76306 None:intergenic 55.0%
CTCTACCCTCTTCTTCCTGG+TGG + 51431:75349-75368 None:intergenic 55.0%
CTGCATTGCATGTAGCCACC+AGG - 51431:75331-75350 MS.gene061932:intron 55.0%
GAGAGGAATAGGGTGGGTCT+AGG + 51431:74181-74200 None:intergenic 55.0%
GAGGAATAGGGTGGGTCTAG+GGG + 51431:74179-74198 None:intergenic 55.0%
GATCCATGAATGGCCGTCGT+GGG + 51431:74111-74130 None:intergenic 55.0%
GCCGGAAGTGGAGAGGAATA+GGG + 51431:74191-74210 None:intergenic 55.0%
GGAAGTGGAGAGGAATAGGG+TGG + 51431:74188-74207 None:intergenic 55.0%
GGAGACAAGAAGGGCTTTGC+CGG + 51431:74209-74228 None:intergenic 55.0%
TCAGTCCTTCGAGCAAGCTG+CGG + 51431:75195-75214 None:intergenic 55.0%
TGATCCATGAATGGCCGTCG+TGG + 51431:74112-74131 None:intergenic 55.0%
TGCCGGAAGTGGAGAGGAAT+AGG + 51431:74192-74211 None:intergenic 55.0%
TTGCGCGGCAAGATGAAGCT+CGG + 51431:74335-74354 None:intergenic 55.0%
! AGGGCATTCGCATTGGTGTC+GGG + 51431:75596-75615 None:intergenic 55.0%
! CACTTCATTGGCTGTGGTGG+TGG - 51431:76036-76055 MS.gene061932:intron 55.0%
! GACGAGGCGTTTGCCAGAAT+TGG + 51431:74257-74276 None:intergenic 55.0%
! GCACTTTTCACAGTCCCTGG+TGG - 51431:75932-75951 MS.gene061932:intron 55.0%
! GCAGCACTTTTCACAGTCCC+TGG - 51431:75929-75948 MS.gene061932:intron 55.0%
! GTAGGGGGGATTGTAATGGG+TGG - 51431:76226-76245 MS.gene061932:CDS 55.0%
! GTTTTCCTCAGCTCGTCCCT+TGG + 51431:75740-75759 None:intergenic 55.0%
! TGCGGCTACAAGAGGGCATA+CGG - 51431:75038-75057 MS.gene061932:CDS 55.0%
!! GAGGGCATTCGCATTGGTGT+CGG + 51431:75597-75616 None:intergenic 55.0%
!! GCGGAGGAAAGCACCATAAC+CGG - 51431:76687-76706 MS.gene061932:CDS 55.0%
AGTTGGTCGACGCAGCCTGT+GGG - 51431:76183-76202 MS.gene061932:intron 60.0%
CAGTCCTTCGAGCAAGCTGC+GGG + 51431:75194-75213 None:intergenic 60.0%
CATGAATGGCCGTCGTGGGA+AGG + 51431:74107-74126 None:intergenic 60.0%
CCATTCATGGATCACCCCGC+CGG - 51431:74118-74137 MS.gene061932:CDS 60.0%
CTGCGCAAGTTGCACAGAGC+AGG - 51431:75845-75864 MS.gene061932:CDS 60.0%
CTTCATCTTGCCGCGCAACG+CGG - 51431:74337-74356 MS.gene061932:intron 60.0%
CTTCCCACGACGGCCATTCA+TGG - 51431:74105-74124 MS.gene061932:CDS 60.0%
GAATAGGGTGGGTCTAGGGG+TGG + 51431:74176-74195 None:intergenic 60.0%
GTGCAACTTGCGCAGCTCCT+TGG + 51431:75840-75859 None:intergenic 60.0%
TAGTTGGTCGACGCAGCCTG+TGG - 51431:76182-76201 MS.gene061932:intron 60.0%
TCTAGGGGTGGTTGGGGTGT+TGG + 51431:74164-74183 None:intergenic 60.0%
TCTTGCTGGGTGTCTCGACG+AGG + 51431:74273-74292 None:intergenic 60.0%
TGAATGGCCGTCGTGGGAAG+GGG + 51431:74105-74124 None:intergenic 60.0%
TGGGTTCGGAAAGAGGAGCG+TGG + 51431:74144-74163 None:intergenic 60.0%
! CTAGGGGTGGTTGGGGTGTT+GGG + 51431:74163-74182 None:intergenic 60.0%
! TTCGGAAAGAGGAGCGTGGC+CGG + 51431:74140-74159 None:intergenic 60.0%
!! GGGGTGTTGGGTTCGGAAAG+AGG + 51431:74151-74170 None:intergenic 60.0%
!! GGTGGTTGGGGTGTTGGGTT+CGG + 51431:74158-74177 None:intergenic 60.0%
ACCAGCCAAGGGACGAGCTG+AGG - 51431:75732-75751 MS.gene061932:CDS 65.0%
AGGGTGGGTCTAGGGGTGGT+TGG + 51431:74172-74191 None:intergenic 65.0%
CCGGCGGGGTGATCCATGAA+TGG + 51431:74121-74140 None:intergenic 65.0%
GAATGGCCGTCGTGGGAAGG+GGG + 51431:74104-74123 None:intergenic 65.0%
GCGGTGATGCTGCCGCTGTT+AGG - 51431:74356-74375 MS.gene061932:intron 65.0%
GGGCTTTGCCGGAAGTGGAG+AGG + 51431:74198-74217 None:intergenic 65.0%
GGGTGGGTCTAGGGGTGGTT+GGG + 51431:74171-74190 None:intergenic 65.0%
GGTGGGTCTAGGGGTGGTTG+GGG + 51431:74170-74189 None:intergenic 65.0%
TCCTCAGCTCGTCCCTTGGC+TGG + 51431:75736-75755 None:intergenic 65.0%
! AGGACCCGCAGCTTGCTCGA+AGG - 51431:75187-75206 MS.gene061932:CDS 65.0%
GGCAGCATCACCGCGTTGCG+CGG + 51431:74350-74369 None:intergenic 70.0%
! AAAGAGGAGCGTGGCCGGCG+GGG + 51431:74135-74154 None:intergenic 70.0%
! GAAAGAGGAGCGTGGCCGGC+GGG + 51431:74136-74155 None:intergenic 70.0%
! GGAAAGAGGAGCGTGGCCGG+CGG + 51431:74137-74156 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
51431 gene 74094 76734 74094 ID=MS.gene061932
51431 mRNA 74094 76734 74094 ID=MS.gene061932.t1;Parent=MS.gene061932
51431 exon 76191 76734 76191 ID=MS.gene061932.t1.exon1;Parent=MS.gene061932.t1
51431 CDS 76191 76734 76191 ID=cds.MS.gene061932.t1;Parent=MS.gene061932.t1
51431 exon 75460 75869 75460 ID=MS.gene061932.t1.exon2;Parent=MS.gene061932.t1
51431 CDS 75460 75869 75460 ID=cds.MS.gene061932.t1;Parent=MS.gene061932.t1
51431 exon 74459 75259 74459 ID=MS.gene061932.t1.exon3;Parent=MS.gene061932.t1
51431 CDS 74459 75259 74459 ID=cds.MS.gene061932.t1;Parent=MS.gene061932.t1
51431 exon 74094 74147 74094 ID=MS.gene061932.t1.exon4;Parent=MS.gene061932.t1
51431 CDS 74094 74147 74094 ID=cds.MS.gene061932.t1;Parent=MS.gene061932.t1
Gene Sequence

>MS.gene061932

CATTACTCCCCCTTCCCACGACGGCCATTCATGGATCACCCCGCCGGCCACGCTCCTCTTTCCGAACCCAACACCCCAACCACCCCTAGACCCACCCTATTCCTCTCCACTTCCGGCAAAGCCCTTCTTGTCTCCAACTCCAACAAATCCCTCGTCATTTCCAATTCTGGCAAACGCCTCGTCGAGACACCCAGCAAGAAAAAATATGTAAAACAGGTCACCGGTCGTCATAATGACACCGAGCTTCATCTTGCCGCGCAACGCGGTGATGCTGCCGCTGTTAGGAATATTCTGGCTGAGATTGATGATCAAATGATGGGAACGCTCAGTGGTGCTGAGTTTGATGCTGAAGTTGCGGATATAAGGTCTGCCATTGTTAATGAAGTTAATGACTTGGGTGAAACCGCACTTTTTACCGCAGCTGAGAAAGGTCGTTTTGATGTTGTTAAAGAACTTCTCCCTTATACCACCAAAGAAGGACTATCTTGTAAAAACCGCTCTGGTTTTGATCCATTGCATATTGCAGCAAATCAAGGTCACAAAGGTATAATATCAGACACATTTCTTCAATGAGTATTGTCATAGGCACTTGTTAGATATTTGTGATAGTTTATAGAAAAAAAATTGTGGCATGTCTATAAGCTGTTTTTAACTTATTTCCATAAGCTCTTTAGGATAGCTAATGAAAACAACTTATAACATATATGAAAACAATTGTTAGAGAAATAACTTGTACATAAGCACTTTTATTATTAGTGTTTATGCTAGAAACGTTTTTATCCAAACAGTCAGGTTATGATTTTGATATTGATTATTAGTTGTTCTTTGTAGACACTGTTATATATATTGTTGTGAATGGTGGCAGAGATTGTGCAGTTGCTGCTAGACCATGATCCAGAGCTAATCAAGACATTTGCACAGTCAAATGCAACTCCTCTTGTATCTGCGGCTACAAGAGGGCATACGGATATTGTTGAATTGTTACTATCTTATGATCCTAGTCAATTGGAGATAGCTAGATCCAATGGAAAGAATGCACTTCATTTATCTGCACGCCAGGGATATGTTGATATTGTCAATATATTGTTAGGGAAGGACCCGCAGCTTGCTCGAAGGACTGATAAGAAAGGACAAACGCCGCTTCATATGGCGGTCAAAGGGGTTAACTGTGAAGTGGTGAAGTTGCTTCTTGCTGCTGATGGTGCAAGTGTCATGCTTCCTGACAAGTTTGGCAATACTGCATTGCATGTAGCCACCAGGAAGAAGAGGGTAGAGGTAATATCTTAGCTGCTCAATTTTAAACATTGATATGATACATAAAGTAGTGTAACTGCAAAACCATGTGGAGTTCGCTAGTTATATATGTCATATAGTTTTTACATCTACAACGATGCCTTTATTTTGAGTAATATAACAAACATGTCTGATTTTAACTTGAAGAGTGAACTAGTTATGACACACAAGAGTTGATGCAGATAGTGAATGAGTTGTTGCTTCTTCCCGACACCAATGCGAATGCCCTCACAAGAGACCACAAAACACCTCTTGACCTTGCGGAAGCACTTCCAATATCAGAAGAGATTTTGGAGATCAAGGACTCACTTATTCGTTATGGTGCAGTTAAAGCCAATGATCTCAACCAGCCAAGGGACGAGCTGAGGAAAACCATGACTCAGATTAAGAAAGATGTTTCTTTTCAGCTTGAACAAACTCGAAAAACAAACAAGAATGTGAATGGGATTGCCAAGGAGCTGCGCAAGTTGCACAGAGCAGGAATCAACAATGCTACCAACTCTGTAACTGTGGTTTCTGTGCTATTTGCAACGGTTGCATTTGCAGCACTTTTCACAGTCCCTGGTGGGGATCATGATAATGGGATGGCTGTGATGGTTCACACTGCATCTTTCAAGACCTTTTTCATCTCTAATGCTATTGCACTTTTCACTTCATTGGCTGTGGTGGTGGTTCAAATAACTGTTGTTAGAGGGGAGATAAAGTCTGAGAGAAGGGTTACAGAGGTGATCAATAAGATGATGTGGTTAGCGTCTGTGTGCACCTCAGTTTCATTTGTTGCAGCATCTTATATAGTAGTTGGTCGACGCAGCCTGTGGGCTGCAATCCTTGTTACTGTTGTAGGGGGGATTGTAATGGGTGGTGTTCTTGGAACAATGACATACTATGTTATCAAATCCAAACGTCACCGAAGAGTGAGGAAGAAAGAGAAGATCTCAAGGAATGGAACACATTCATGGCGTAATTCTGATTCGGAATCAGAAGTAAATCCAATTTATGCTATTTAATAGTCACTTTGCACTTACAATGTAAGTTTGATGCTTTTGTTCGATGCTTTTTTATTTGACGAACGTTGAAAAGGACCTGTAAGGTTTCTTTTGTTTATAGAGAAAAAAAAGATGGCTTTTATGGAAGTAAATGGCTTCTTGGTATTGTTTAAAAGCGAAAGAACTAAGGGAGCCAAATCGGCCAGTTACATCTTCTTAAAAGGTTGGTTTTCCATCAAGACATTAGTTGTCATGTTTATCATTTATGTTGTGAACTTGATATTTTGTGCTTGTTTCTTCAGATGTAGTCAAAGGCGGAGGAAAGCACCATAACCGGACAAGAACTAGCTCCTTTCGGTTGA

Protein sequence

>MS.gene061932.t1

HYSPFPRRPFMDHPAGHAPLSEPNTPTTPRPTLFLSTSGKALLVSNSNKSLVISNSGKRLVETPSKKKYVKQVTGRHNDTELHLAAQRGDAAAVRNILAEIDDQMMGTLSGAEFDAEVADIRSAIVNEVNDLGETALFTAAEKGRFDVVKELLPYTTKEGLSCKNRSGFDPLHIAANQGHKEIVQLLLDHDPELIKTFAQSNATPLVSAATRGHTDIVELLLSYDPSQLEIARSNGKNALHLSARQGYVDIVNILLGKDPQLARRTDKKGQTPLHMAVKGVNCEVVKLLLAADGASVMLPDKFGNTALHVATRKKRVEIVNELLLLPDTNANALTRDHKTPLDLAEALPISEEILEIKDSLIRYGAVKANDLNQPRDELRKTMTQIKKDVSFQLEQTRKTNKNVNGIAKELRKLHRAGINNATNSVTVVSVLFATVAFAALFTVPGGDHDNGMAVMVHTASFKTFFISNAIALFTSLAVVVVQITVVRGEIKSERRVTEVINKMMWLASVCTSVSFVAASYIVVGRRSLWAAILVTVVGGIVMGGVLGTMTYYVIKSKRHRRVRKKEKISRNGTHSWRNSDSESESKAEESTITGQELAPFG