Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22482.t1 | XP_003625554.1 | 98.6 | 582 | 8 | 0 | 1 | 582 | 1 | 582 | 1.20E-206 | 729.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22482.t1 | Q9C7A2 | 76.1 | 522 | 123 | 2 | 63 | 582 | 69 | 590 | 2.7e-127 | 457.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22482.t1 | G7L1N1 | 98.6 | 582 | 8 | 0 | 1 | 582 | 1 | 582 | 8.5e-207 | 729.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22482.t1 | MTR_7g100430 | 98.797 | 582 | 7 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1177 |
MS.gene22482.t1 | MTR_1g115575 | 73.358 | 548 | 139 | 4 | 41 | 582 | 47 | 593 | 0.0 | 808 |
MS.gene22482.t1 | MTR_2g096190 | 44.961 | 516 | 244 | 7 | 50 | 548 | 10 | 502 | 5.89e-128 | 386 |
MS.gene22482.t1 | MTR_4g062100 | 44.814 | 511 | 244 | 8 | 56 | 551 | 19 | 506 | 1.14e-126 | 383 |
MS.gene22482.t1 | MTR_7g117620 | 40.892 | 538 | 287 | 4 | 55 | 582 | 30 | 546 | 3.29e-117 | 358 |
MS.gene22482.t1 | MTR_1g032100 | 43.542 | 480 | 253 | 6 | 120 | 582 | 53 | 531 | 6.43e-117 | 357 |
MS.gene22482.t1 | MTR_7g100390 | 40.445 | 539 | 283 | 6 | 61 | 582 | 3 | 520 | 1.47e-109 | 338 |
MS.gene22482.t1 | MTR_8g105260 | 40.083 | 484 | 264 | 7 | 120 | 582 | 60 | 538 | 4.41e-107 | 332 |
MS.gene22482.t1 | MTR_2g101310 | 26.829 | 492 | 284 | 12 | 157 | 575 | 135 | 623 | 7.58e-35 | 139 |
MS.gene22482.t1 | MTR_2g101310 | 27.556 | 225 | 161 | 2 | 112 | 335 | 24 | 247 | 1.84e-14 | 77.0 |
MS.gene22482.t1 | MTR_1g069110 | 26.371 | 383 | 239 | 9 | 162 | 512 | 18 | 389 | 3.80e-22 | 100 |
MS.gene22482.t1 | MTR_2g101320 | 25.175 | 429 | 283 | 10 | 122 | 514 | 137 | 563 | 6.74e-22 | 100 |
MS.gene22482.t1 | MTR_2g101320 | 25.161 | 310 | 208 | 6 | 69 | 359 | 37 | 341 | 2.92e-14 | 76.3 |
MS.gene22482.t1 | MTR_2g101320 | 25.207 | 242 | 157 | 5 | 106 | 335 | 18 | 247 | 6.17e-14 | 75.1 |
MS.gene22482.t1 | MTR_3g105650 | 24.434 | 442 | 271 | 16 | 124 | 561 | 38 | 420 | 2.59e-19 | 91.3 |
MS.gene22482.t1 | MTR_2g101310 | 25.341 | 367 | 204 | 9 | 157 | 453 | 135 | 501 | 3.56e-18 | 88.2 |
MS.gene22482.t1 | MTR_2g101310 | 27.556 | 225 | 161 | 2 | 112 | 335 | 24 | 247 | 5.34e-14 | 75.1 |
MS.gene22482.t1 | MTR_8g073260 | 25.469 | 373 | 205 | 14 | 69 | 437 | 8 | 311 | 1.39e-17 | 85.9 |
MS.gene22482.t1 | MTR_5g043640 | 34.463 | 177 | 111 | 4 | 124 | 298 | 20 | 193 | 1.10e-16 | 80.5 |
MS.gene22482.t1 | MTR_5g085810 | 24.286 | 420 | 256 | 14 | 162 | 524 | 273 | 687 | 5.40e-16 | 82.0 |
MS.gene22482.t1 | MTR_8g080080 | 31.163 | 215 | 127 | 7 | 162 | 356 | 189 | 402 | 1.09e-15 | 80.9 |
MS.gene22482.t1 | MTR_8g080080 | 26.374 | 273 | 169 | 10 | 65 | 316 | 133 | 394 | 1.16e-11 | 68.2 |
MS.gene22482.t1 | MTR_6g027840 | 31.000 | 200 | 133 | 4 | 116 | 315 | 170 | 364 | 6.58e-15 | 78.2 |
MS.gene22482.t1 | MTR_6g027840 | 30.918 | 207 | 135 | 6 | 111 | 314 | 129 | 330 | 2.83e-13 | 72.8 |
MS.gene22482.t1 | MTR_3g058550 | 30.539 | 167 | 98 | 3 | 118 | 266 | 2 | 168 | 1.26e-13 | 70.9 |
MS.gene22482.t1 | MTR_2g096760 | 30.806 | 211 | 124 | 5 | 120 | 314 | 11 | 215 | 1.49e-13 | 73.6 |
MS.gene22482.t1 | MTR_8g467780 | 22.251 | 382 | 218 | 11 | 71 | 440 | 10 | 324 | 1.58e-13 | 73.6 |
MS.gene22482.t1 | MTR_5g085480 | 26.502 | 283 | 170 | 10 | 66 | 314 | 87 | 365 | 1.68e-13 | 73.9 |
MS.gene22482.t1 | MTR_1g089180 | 28.926 | 242 | 134 | 8 | 119 | 332 | 213 | 444 | 3.99e-13 | 72.0 |
MS.gene22482.t1 | MTR_8g040930 | 22.951 | 366 | 184 | 11 | 146 | 472 | 12 | 318 | 2.58e-12 | 69.3 |
MS.gene22482.t1 | MTR_8g041240 | 22.951 | 366 | 184 | 11 | 146 | 472 | 12 | 318 | 2.58e-12 | 69.3 |
MS.gene22482.t1 | MTR_3g055310 | 27.143 | 140 | 95 | 2 | 399 | 531 | 301 | 440 | 6.01e-12 | 68.6 |
MS.gene22482.t1 | MTR_3g055310 | 27.143 | 140 | 95 | 2 | 399 | 531 | 329 | 468 | 6.99e-12 | 68.6 |
MS.gene22482.t1 | MTR_3g055310 | 27.143 | 140 | 95 | 2 | 399 | 531 | 249 | 388 | 7.09e-12 | 68.2 |
MS.gene22482.t1 | MTR_3g055310 | 27.143 | 140 | 95 | 2 | 399 | 531 | 327 | 466 | 7.21e-12 | 68.2 |
MS.gene22482.t1 | MTR_3g055310 | 27.143 | 140 | 95 | 2 | 399 | 531 | 186 | 325 | 8.85e-12 | 67.4 |
MS.gene22482.t1 | MTR_3g055310 | 27.143 | 140 | 95 | 2 | 399 | 531 | 354 | 493 | 9.11e-12 | 68.2 |
MS.gene22482.t1 | MTR_3g051060 | 29.518 | 166 | 100 | 3 | 118 | 266 | 54 | 219 | 2.45e-11 | 67.0 |
MS.gene22482.t1 | MTR_5g026800 | 33.557 | 149 | 95 | 4 | 154 | 302 | 8 | 152 | 2.61e-11 | 64.7 |
MS.gene22482.t1 | MTR_8g069880 | 24.339 | 378 | 203 | 14 | 124 | 472 | 40 | 363 | 5.63e-11 | 65.5 |
MS.gene22482.t1 | MTR_1g112830 | 29.189 | 185 | 125 | 4 | 114 | 296 | 160 | 340 | 5.69e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22482.t1 | AT3G09550 | 73.129 | 588 | 141 | 4 | 11 | 582 | 28 | 614 | 0.0 | 838 |
MS.gene22482.t1 | AT3G09550 | 73.129 | 588 | 141 | 4 | 11 | 582 | 21 | 607 | 0.0 | 837 |
MS.gene22482.t1 | AT3G09550 | 73.129 | 588 | 141 | 4 | 11 | 582 | 21 | 607 | 0.0 | 837 |
MS.gene22482.t1 | AT3G12360 | 69.739 | 575 | 163 | 5 | 11 | 582 | 24 | 590 | 0.0 | 786 |
MS.gene22482.t1 | AT3G12360 | 69.739 | 575 | 163 | 5 | 11 | 582 | 12 | 578 | 0.0 | 785 |
MS.gene22482.t1 | AT2G31820 | 42.256 | 523 | 267 | 5 | 65 | 573 | 148 | 649 | 2.00e-122 | 376 |
MS.gene22482.t1 | AT5G60070 | 44.653 | 533 | 246 | 13 | 56 | 562 | 20 | 529 | 2.14e-119 | 364 |
MS.gene22482.t1 | AT1G07710 | 43.194 | 551 | 267 | 8 | 56 | 582 | 15 | 543 | 6.93e-119 | 363 |
MS.gene22482.t1 | AT1G07710 | 43.194 | 551 | 267 | 8 | 56 | 582 | 15 | 543 | 6.93e-119 | 363 |
MS.gene22482.t1 | AT1G05640 | 42.505 | 527 | 267 | 8 | 65 | 576 | 110 | 615 | 5.43e-114 | 353 |
MS.gene22482.t1 | AT2G01680 | 40.161 | 498 | 280 | 6 | 94 | 575 | 28 | 523 | 6.40e-112 | 345 |
MS.gene22482.t1 | AT5G02620 | 40.434 | 507 | 272 | 6 | 56 | 548 | 5 | 495 | 2.89e-104 | 325 |
MS.gene22482.t1 | AT5G02620 | 40.434 | 507 | 272 | 6 | 56 | 548 | 5 | 495 | 2.89e-104 | 325 |
MS.gene22482.t1 | AT5G02620 | 40.434 | 507 | 272 | 6 | 56 | 548 | 5 | 495 | 2.89e-104 | 325 |
MS.gene22482.t1 | AT5G02620 | 38.679 | 530 | 272 | 7 | 56 | 548 | 5 | 518 | 1.09e-98 | 311 |
MS.gene22482.t1 | AT5G02620 | 38.679 | 530 | 272 | 7 | 56 | 548 | 5 | 518 | 1.09e-98 | 311 |
MS.gene22482.t1 | AT1G34050 | 26.230 | 488 | 247 | 14 | 162 | 546 | 58 | 535 | 1.68e-33 | 135 |
MS.gene22482.t1 | AT1G10340 | 24.578 | 533 | 315 | 13 | 68 | 544 | 37 | 538 | 1.01e-31 | 130 |
MS.gene22482.t1 | AT1G10340 | 24.764 | 529 | 315 | 13 | 68 | 544 | 37 | 534 | 1.18e-31 | 129 |
MS.gene22482.t1 | AT2G24600 | 25.000 | 548 | 313 | 18 | 68 | 549 | 37 | 552 | 4.14e-30 | 125 |
MS.gene22482.t1 | AT2G24600 | 25.000 | 548 | 313 | 18 | 68 | 549 | 37 | 552 | 4.14e-30 | 125 |
MS.gene22482.t1 | AT5G54710 | 25.394 | 508 | 322 | 16 | 103 | 565 | 82 | 577 | 9.60e-29 | 121 |
MS.gene22482.t1 | AT5G54710 | 25.394 | 508 | 322 | 16 | 103 | 565 | 127 | 622 | 1.20e-28 | 121 |
MS.gene22482.t1 | AT4G03500 | 23.913 | 506 | 336 | 14 | 69 | 533 | 103 | 600 | 1.50e-28 | 120 |
MS.gene22482.t1 | AT4G03500 | 23.913 | 506 | 336 | 14 | 69 | 533 | 80 | 577 | 1.69e-28 | 120 |
MS.gene22482.t1 | AT4G03500 | 23.913 | 506 | 336 | 14 | 69 | 533 | 80 | 577 | 1.69e-28 | 120 |
MS.gene22482.t1 | AT1G03670 | 26.364 | 440 | 286 | 8 | 125 | 554 | 182 | 593 | 1.98e-25 | 111 |
MS.gene22482.t1 | AT5G50140 | 23.387 | 496 | 321 | 12 | 122 | 561 | 26 | 518 | 3.24e-23 | 103 |
MS.gene22482.t1 | AT4G03490 | 26.047 | 430 | 274 | 13 | 125 | 543 | 180 | 576 | 1.86e-22 | 102 |
MS.gene22482.t1 | AT4G03490 | 26.303 | 422 | 267 | 13 | 127 | 537 | 182 | 570 | 2.30e-22 | 101 |
MS.gene22482.t1 | AT4G03490 | 26.303 | 422 | 267 | 13 | 127 | 537 | 172 | 560 | 2.40e-22 | 101 |
MS.gene22482.t1 | AT5G54700 | 25.797 | 345 | 188 | 8 | 223 | 535 | 34 | 342 | 2.19e-21 | 97.8 |
MS.gene22482.t1 | AT4G03460 | 25.000 | 420 | 270 | 9 | 120 | 525 | 158 | 546 | 1.40e-20 | 96.3 |
MS.gene22482.t1 | AT4G03470 | 25.098 | 510 | 336 | 15 | 42 | 532 | 138 | 620 | 1.45e-20 | 96.3 |
MS.gene22482.t1 | AT4G03460 | 25.000 | 420 | 270 | 9 | 120 | 525 | 190 | 578 | 1.77e-20 | 95.9 |
MS.gene22482.t1 | AT5G54700 | 27.778 | 324 | 187 | 10 | 249 | 550 | 20 | 318 | 4.74e-20 | 92.4 |
MS.gene22482.t1 | AT4G14390 | 23.554 | 484 | 331 | 12 | 70 | 528 | 168 | 637 | 7.99e-19 | 90.9 |
MS.gene22482.t1 | AT4G14390 | 23.602 | 483 | 331 | 12 | 70 | 528 | 149 | 617 | 5.38e-18 | 88.2 |
MS.gene22482.t1 | AT2G03430 | 35.057 | 174 | 108 | 4 | 127 | 298 | 16 | 186 | 6.16e-18 | 84.0 |
MS.gene22482.t1 | AT4G14390 | 23.602 | 483 | 331 | 12 | 70 | 528 | 168 | 636 | 8.21e-18 | 87.8 |
MS.gene22482.t1 | AT3G18670 | 24.017 | 483 | 296 | 16 | 123 | 534 | 84 | 566 | 9.53e-18 | 87.4 |
MS.gene22482.t1 | AT5G15500 | 30.049 | 203 | 121 | 5 | 125 | 309 | 40 | 239 | 1.86e-17 | 85.9 |
MS.gene22482.t1 | AT4G03490 | 25.139 | 541 | 305 | 18 | 60 | 537 | 9 | 512 | 2.98e-17 | 85.9 |
MS.gene22482.t1 | AT4G03490 | 25.046 | 547 | 310 | 18 | 60 | 543 | 19 | 528 | 3.63e-17 | 85.5 |
MS.gene22482.t1 | AT1G14500 | 24.625 | 333 | 177 | 8 | 155 | 467 | 68 | 346 | 3.19e-16 | 81.6 |
MS.gene22482.t1 | AT4G03480 | 25.641 | 351 | 227 | 8 | 155 | 474 | 309 | 656 | 4.16e-16 | 82.4 |
MS.gene22482.t1 | AT4G03480 | 25.641 | 351 | 227 | 8 | 155 | 474 | 312 | 659 | 4.45e-16 | 82.0 |
MS.gene22482.t1 | AT4G10720 | 22.727 | 440 | 272 | 15 | 125 | 552 | 39 | 422 | 1.41e-15 | 79.7 |
MS.gene22482.t1 | AT5G51160 | 26.990 | 289 | 168 | 7 | 155 | 437 | 44 | 295 | 5.53e-15 | 77.8 |
MS.gene22482.t1 | AT2G24600 | 23.776 | 429 | 242 | 13 | 68 | 442 | 37 | 434 | 8.95e-15 | 77.8 |
MS.gene22482.t1 | AT2G24600 | 23.776 | 429 | 242 | 13 | 68 | 442 | 37 | 434 | 8.95e-15 | 77.8 |
MS.gene22482.t1 | AT4G10720 | 23.714 | 350 | 223 | 9 | 125 | 469 | 39 | 349 | 9.67e-15 | 77.0 |
MS.gene22482.t1 | AT4G03450 | 25.594 | 379 | 233 | 11 | 120 | 480 | 184 | 531 | 4.71e-14 | 75.5 |
MS.gene22482.t1 | AT4G03450 | 25.594 | 379 | 233 | 11 | 120 | 480 | 184 | 531 | 9.27e-14 | 74.7 |
MS.gene22482.t1 | AT4G14390 | 24.619 | 394 | 248 | 10 | 70 | 435 | 149 | 521 | 5.16e-13 | 72.0 |
MS.gene22482.t1 | AT3G18670 | 28.169 | 142 | 96 | 1 | 399 | 534 | 480 | 621 | 8.06e-13 | 71.6 |
MS.gene22482.t1 | AT4G03440 | 23.898 | 431 | 278 | 13 | 155 | 545 | 269 | 689 | 1.62e-12 | 70.9 |
MS.gene22482.t1 | AT4G03440 | 23.898 | 431 | 278 | 13 | 155 | 545 | 262 | 682 | 1.66e-12 | 70.9 |
MS.gene22482.t1 | AT4G03440 | 23.898 | 431 | 278 | 13 | 155 | 545 | 262 | 682 | 1.66e-12 | 70.9 |
MS.gene22482.t1 | AT3G04710 | 28.516 | 256 | 152 | 9 | 43 | 280 | 30 | 272 | 1.34e-11 | 67.4 |
MS.gene22482.t1 | AT3G04710 | 28.516 | 256 | 152 | 9 | 43 | 280 | 254 | 496 | 1.84e-11 | 67.4 |
MS.gene22482.t1 | AT5G54610 | 28.342 | 187 | 121 | 3 | 125 | 300 | 39 | 223 | 2.88e-11 | 66.2 |
MS.gene22482.t1 | AT2G14255 | 27.848 | 237 | 157 | 7 | 125 | 352 | 26 | 257 | 3.85e-11 | 66.2 |
MS.gene22482.t1 | AT4G19150 | 32.143 | 140 | 92 | 3 | 162 | 301 | 20 | 156 | 4.34e-11 | 63.9 |
Find 155 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCAATATCAGAAGAGATTT+TGG | 0.120998 | 7.4:+9788711 | MS.gene22482:CDS |
GACTATTAAATAGCATAAAT+TGG | 0.217594 | 7.4:-9789429 | None:intergenic |
AGTCCTTCTTTGGTGGTATA+AGG | 0.227846 | 7.4:-9787603 | None:intergenic |
TCTAGGGGTGGTTGGGGTGT+TGG | 0.234547 | 7.4:-9787211 | None:intergenic |
CTTTCTCAGCAGCTGTAAAA+AGG | 0.236683 | 7.4:-9787551 | None:intergenic |
GATATTGTCAAGATATTGTT+AGG | 0.241959 | 7.4:+9788215 | MS.gene22482:CDS |
GCAATCCTTGTTACTGTTGT+AGG | 0.249078 | 7.4:+9789261 | MS.gene22482:CDS |
TCCCTCGTCATTTCCAATTC+TGG | 0.254175 | 7.4:+9787291 | MS.gene22482:CDS |
TCCAAAATCTCTTCTGATAT+TGG | 0.257559 | 7.4:-9788712 | None:intergenic |
GGGTGGGTCTAGGGGTGGTT+GGG | 0.257724 | 7.4:-9787218 | None:intergenic |
CCTTGGCTGGTTGAGATCAT+TGG | 0.276643 | 7.4:-9788773 | None:intergenic |
TACCTCTACCCTCTTCTTCC+TGG | 0.277013 | 7.4:-9788402 | None:intergenic |
TTTACAAGATAGTCCTTCTT+TGG | 0.279483 | 7.4:-9787613 | None:intergenic |
ATTGTAATGGGTGGTGTTCT+TGG | 0.280140 | 7.4:+9789288 | MS.gene22482:CDS |
CTAGGGGTGGTTGGGGTGTT+GGG | 0.284653 | 7.4:-9787210 | None:intergenic |
GACGAGGCGTTTGCCAGAAT+TGG | 0.304324 | 7.4:-9787304 | None:intergenic |
GGTGGGTCTAGGGGTGGTTG+GGG | 0.319326 | 7.4:-9787217 | None:intergenic |
CCTCACTCTTCGGTGACGTT+TGG | 0.320261 | 7.4:-9789337 | None:intergenic |
CCTGGTGGGGATCATGATAA+TGG | 0.324667 | 7.4:+9789000 | MS.gene22482:CDS |
TGCCGGAAGTGGAGAGGAAT+AGG | 0.343790 | 7.4:-9787239 | None:intergenic |
GAGAGGAATAGGGTGGGTCT+AGG | 0.344264 | 7.4:-9787228 | None:intergenic |
GGTGGTTGGGGTGTTGGGTT+CGG | 0.348554 | 7.4:-9787205 | None:intergenic |
AGGGTGGGTCTAGGGGTGGT+TGG | 0.353657 | 7.4:-9787219 | None:intergenic |
ATGCTGAAGTTGCGGATATA+AGG | 0.362620 | 7.4:+9787487 | MS.gene22482:CDS |
GGAGACAAGAAGGGCTTTGC+CGG | 0.364614 | 7.4:-9787256 | None:intergenic |
GACGAGGGATTTGTTGGAGT+TGG | 0.371967 | 7.4:-9787277 | None:intergenic |
CAATCCTTGTTACTGTTGTA+GGG | 0.374512 | 7.4:+9789262 | MS.gene22482:CDS |
CACTTCATTGGCTGTGGTGG+TGG | 0.381287 | 7.4:+9789089 | MS.gene22482:CDS |
TCCTCAGCTCGTCCCTTGGC+TGG | 0.388294 | 7.4:-9788786 | None:intergenic |
GAAAGAGGAGCGTGGCCGGC+GGG | 0.390146 | 7.4:-9787183 | None:intergenic |
GAGGAATAGGGTGGGTCTAG+GGG | 0.395584 | 7.4:-9787226 | None:intergenic |
AAGGACTCACTTATTCGTTA+TGG | 0.399648 | 7.4:+9788739 | MS.gene22482:CDS |
GTCCTTCTTTGGTGGTATAA+GGG | 0.400914 | 7.4:-9787602 | None:intergenic |
AGAGGAATAGGGTGGGTCTA+GGG | 0.406165 | 7.4:-9787227 | None:intergenic |
GTTCAAATAACTGTTGTTAG+AGG | 0.406250 | 7.4:+9789111 | MS.gene22482:CDS |
TCTCTTTCTTCCTCACTCTT+CGG | 0.407155 | 7.4:-9789347 | None:intergenic |
CGCTTCATATGGCGGTCAAA+GGG | 0.411725 | 7.4:+9788285 | MS.gene22482:CDS |
AAGTTGCTTCTTGCTGCTGA+TGG | 0.419284 | 7.4:+9788326 | MS.gene22482:CDS |
GCGGTGATGCTGCCGCTGTC+AGG | 0.425588 | 7.4:+9787406 | MS.gene22482:CDS |
GTCATGCTTCCTGACAAGTT+TGG | 0.426669 | 7.4:+9788356 | MS.gene22482:CDS |
AAAACAAACAAGAATGTGAA+TGG | 0.428260 | 7.4:+9788862 | MS.gene22482:CDS |
TGCCGCTGTCAGGAATATTC+TGG | 0.433235 | 7.4:+9787416 | MS.gene22482:CDS |
GGAAATGACGAGGGATTTGT+TGG | 0.436881 | 7.4:-9787283 | None:intergenic |
AAGAAGGGCTTTGCCGGAAG+TGG | 0.440749 | 7.4:-9787250 | None:intergenic |
ATGAAGTGCATTCTTTCCAT+TGG | 0.445344 | 7.4:-9788168 | None:intergenic |
GGAGATAAAGTCTGAGAGAA+GGG | 0.447714 | 7.4:+9789134 | MS.gene22482:CDS |
TTCGGAAAGAGGAGCGTGGC+CGG | 0.449506 | 7.4:-9787187 | None:intergenic |
TTCATGGCGTAATTCTGATT+CGG | 0.456908 | 7.4:+9789392 | MS.gene22482:CDS |
CAAGGAATGGAACACATTCA+TGG | 0.458877 | 7.4:+9789376 | MS.gene22482:CDS |
GAATAGGGTGGGTCTAGGGG+TGG | 0.461324 | 7.4:-9787223 | None:intergenic |
AGGGCATTCGCATTGGTGTC+GGG | 0.461867 | 7.4:-9788646 | None:intergenic |
GCAGTATTGCCAAACTTGTC+AGG | 0.463768 | 7.4:-9788365 | None:intergenic |
ACTTCATTTATCTGCACGCC+AGG | 0.464249 | 7.4:+9788184 | MS.gene22482:CDS |
GCAGCATCTTATATAGTAGT+TGG | 0.467155 | 7.4:+9789219 | MS.gene22482:CDS |
CTGGTGGGGATCATGATAAT+GGG | 0.468589 | 7.4:+9789001 | MS.gene22482:CDS |
GCAAATGTCTTGATTAGCTC+TGG | 0.471908 | 7.4:-9788041 | None:intergenic |
ATCTTTCTTAATCTGAGTCA+TGG | 0.474155 | 7.4:-9788812 | None:intergenic |
AGGACAAACGCCGCTTCATA+TGG | 0.478041 | 7.4:+9788274 | MS.gene22482:CDS |
ACCCTATTCCTCTCCACTTC+CGG | 0.480160 | 7.4:+9787237 | MS.gene22482:CDS |
GTGCAACTTGCGTAGCTCCT+TGG | 0.480210 | 7.4:-9788890 | None:intergenic |
GAGGGCATTCGCATTGGTGT+CGG | 0.481466 | 7.4:-9788647 | None:intergenic |
ACAAGATAGTCCTTCTTTGG+TGG | 0.484767 | 7.4:-9787610 | None:intergenic |
AAGGTCTGCCATTGTTAATG+AGG | 0.486750 | 7.4:+9787506 | MS.gene22482:CDS |
GGGGTGTTGGGTTCGGAAAG+AGG | 0.490833 | 7.4:-9787198 | None:intergenic |
GGGAGATAAAGTCTGAGAGA+AGG | 0.495604 | 7.4:+9789133 | MS.gene22482:CDS |
TCTTGTGAGGGCATTCGCAT+TGG | 0.498367 | 7.4:-9788653 | None:intergenic |
GCCGGAAGTGGAGAGGAATA+GGG | 0.499698 | 7.4:-9787238 | None:intergenic |
CCGCTTCATATGGCGGTCAA+AGG | 0.504074 | 7.4:+9788284 | MS.gene22482:CDS |
TTCAAATAACTGTTGTTAGA+GGG | 0.504770 | 7.4:+9789112 | MS.gene22482:CDS |
AATAGCATTAGAGATGAAAA+AGG | 0.505791 | 7.4:-9789058 | None:intergenic |
TTTCACTTCATTGGCTGTGG+TGG | 0.508039 | 7.4:+9789086 | MS.gene22482:CDS |
GGCAGCATCACCGCGTTGCG+CGG | 0.508234 | 7.4:-9787397 | None:intergenic |
TCTTGATTAGCTCTGGATCA+TGG | 0.513054 | 7.4:-9788034 | None:intergenic |
CTCCCTTATACCACCAAAGA+AGG | 0.513242 | 7.4:+9787600 | MS.gene22482:CDS |
TAGTTGGTCGACGCAGCCTG+TGG | 0.515142 | 7.4:+9789235 | MS.gene22482:CDS |
ATCCTTGTTACTGTTGTAGG+GGG | 0.516823 | 7.4:+9789264 | MS.gene22482:CDS |
TGAGATTGATGATCAAATGA+TGG | 0.517261 | 7.4:+9787440 | MS.gene22482:CDS |
TGTTGGAGTTGGAGACAAGA+AGG | 0.518725 | 7.4:-9787266 | None:intergenic |
GGAAAGAGGAGCGTGGCCGG+CGG | 0.518995 | 7.4:-9787184 | None:intergenic |
AAACAAACAAGAATGTGAAT+GGG | 0.523203 | 7.4:+9788863 | MS.gene22482:CDS |
TGCGGCTACAAGAGGGCATA+CGG | 0.525316 | 7.4:+9788091 | MS.gene22482:CDS |
TGTTAATGAGGTTAATGACT+TGG | 0.526230 | 7.4:+9787518 | MS.gene22482:CDS |
CTACGCAAGTTGCACAGAGC+AGG | 0.527125 | 7.4:+9788898 | MS.gene22482:CDS |
CTAGCTATCTCCAATTGACT+AGG | 0.532153 | 7.4:-9788143 | None:intergenic |
AAAGAGGAGCGTGGCCGGCG+GGG | 0.535243 | 7.4:-9787182 | None:intergenic |
GGAAGAAAGAGAAGATCTCA+AGG | 0.537556 | 7.4:+9789358 | MS.gene22482:CDS |
TTGCATATTGCAGCAAATCA+AGG | 0.538026 | 7.4:+9787657 | MS.gene22482:CDS |
CTCGGTGTCATTATGACGAC+CGG | 0.538570 | 7.4:-9787364 | None:intergenic |
GGTTTCTGTGCTATTTGCAA+CGG | 0.540421 | 7.4:+9788951 | MS.gene22482:CDS |
AAAGAGAAGATCTCAAGGAA+TGG | 0.541144 | 7.4:+9789363 | MS.gene22482:CDS |
CAGTCCTTCGAGCAAGCTGC+GGG | 0.546468 | 7.4:-9788244 | None:intergenic |
CCAATGATCTCAACCAGCCA+AGG | 0.546813 | 7.4:+9788773 | MS.gene22482:CDS |
CTTGTATCTGCGGCTACAAG+AGG | 0.552318 | 7.4:+9788083 | MS.gene22482:CDS |
CCATTATCATGATCCCCACC+AGG | 0.552472 | 7.4:-9789000 | None:intergenic |
GTTAATGAGGTTAATGACTT+GGG | 0.556052 | 7.4:+9787519 | MS.gene22482:CDS |
TTGGAGATAGCTAGATCCAA+TGG | 0.558617 | 7.4:+9788152 | MS.gene22482:CDS |
TCAGTCCTTCGAGCAAGCTG+CGG | 0.564899 | 7.4:-9788245 | None:intergenic |
CTCTACCCTCTTCTTCCTGG+TGG | 0.567336 | 7.4:-9788399 | None:intergenic |
TTGCGCGGCAAGATGAAGCT+CGG | 0.569249 | 7.4:-9787382 | None:intergenic |
TGCTACCAACTCTGTAACTG+TGG | 0.569261 | 7.4:+9788930 | MS.gene22482:CDS |
GTTGGAGTTGGAGACAAGAA+GGG | 0.573938 | 7.4:-9787265 | None:intergenic |
CTGCATTGCATGTAGCCACC+AGG | 0.574200 | 7.4:+9788384 | MS.gene22482:CDS |
ACCAGCCAAGGGACGAGCTG+AGG | 0.575224 | 7.4:+9788785 | MS.gene22482:CDS |
CACCAGGAAGAAGAGGGTAG+AGG | 0.576801 | 7.4:+9788400 | MS.gene22482:CDS |
TGTCAAGATATTGTTAGGGA+AGG | 0.577406 | 7.4:+9788220 | MS.gene22482:CDS |
TGCAACTCCTCTTGTATCTG+CGG | 0.578451 | 7.4:+9788073 | MS.gene22482:CDS |
ATATTGTCAAGATATTGTTA+GGG | 0.578514 | 7.4:+9788216 | MS.gene22482:CDS |
AATCCTTGTTACTGTTGTAG+GGG | 0.579425 | 7.4:+9789263 | MS.gene22482:CDS |
TCAAATAACTGTTGTTAGAG+GGG | 0.580153 | 7.4:+9789113 | MS.gene22482:CDS |
AGGACCCGCAGCTTGCTCGA+AGG | 0.582573 | 7.4:+9788240 | MS.gene22482:CDS |
CCATTCATGGATCACCCCGC+CGG | 0.583675 | 7.4:+9787168 | None:intergenic |
TGATTTGCTGCAATATGCAA+TGG | 0.587424 | 7.4:-9787654 | None:intergenic |
TGTAGCCACCAGGAAGAAGA+GGG | 0.588374 | 7.4:+9788394 | MS.gene22482:CDS |
TCCTTGTTACTGTTGTAGGG+GGG | 0.588655 | 7.4:+9789265 | MS.gene22482:CDS |
TGACAATATCAACATATCCC+TGG | 0.590389 | 7.4:-9788202 | None:intergenic |
TAACAAGGATTGCAGCCCAC+AGG | 0.594685 | 7.4:-9789251 | None:intergenic |
GAGATTGATGATCAAATGAT+GGG | 0.600031 | 7.4:+9787441 | MS.gene22482:CDS |
AGTTGGTCGACGCAGCCTGT+GGG | 0.602868 | 7.4:+9789236 | MS.gene22482:CDS |
GCTCGAAGGACTGATAAGAA+AGG | 0.603769 | 7.4:+9788254 | MS.gene22482:CDS |
CTTCATCTTGCCGCGCAACG+CGG | 0.604158 | 7.4:+9787387 | MS.gene22482:CDS |
ATGTAGCCACCAGGAAGAAG+AGG | 0.605868 | 7.4:+9788393 | MS.gene22482:CDS |
AGTGCTTCCGCAAGGTCAAG+AGG | 0.607646 | 7.4:-9788688 | None:intergenic |
GTCATTAACCTCATTAACAA+TGG | 0.608033 | 7.4:-9787514 | None:intergenic |
AGGTGATCAATAAGATGATG+TGG | 0.610483 | 7.4:+9789163 | MS.gene22482:CDS |
TGATAATGGGATGGCTGTGA+TGG | 0.612051 | 7.4:+9789014 | MS.gene22482:CDS |
TGCCAGAATTGGAAATGACG+AGG | 0.612477 | 7.4:-9787293 | None:intergenic |
GTCTGAGAGAAGGGTTACAG+AGG | 0.613101 | 7.4:+9789143 | MS.gene22482:CDS |
GCCAGAATTGGAAATGACGA+GGG | 0.613573 | 7.4:-9787292 | None:intergenic |
TGGGGATCATGATAATGGGA+TGG | 0.614869 | 7.4:+9789005 | MS.gene22482:CDS |
CTTCATTTATCTGCACGCCA+GGG | 0.616151 | 7.4:+9788185 | MS.gene22482:CDS |
AAATATGTAAAACAGGTCAC+CGG | 0.619209 | 7.4:+9787345 | MS.gene22482:CDS |
TTGTATCTGCGGCTACAAGA+GGG | 0.620058 | 7.4:+9788084 | MS.gene22482:CDS |
CCTTTGACCGCCATATGAAG+CGG | 0.622609 | 7.4:-9788284 | None:intergenic |
CTTGTAGCCGCAGATACAAG+AGG | 0.624185 | 7.4:-9788080 | None:intergenic |
CAAAGGGGTTAACTGTGAAG+TGG | 0.630420 | 7.4:+9788301 | MS.gene22482:CDS |
AGAAACCACAGTTACAGAGT+TGG | 0.633035 | 7.4:-9788935 | None:intergenic |
GAATGTGAATGGGATTGCCA+AGG | 0.633102 | 7.4:+9788873 | MS.gene22482:CDS |
GGGCTTTGCCGGAAGTGGAG+AGG | 0.635402 | 7.4:-9787245 | None:intergenic |
CAATGATCTCAACCAGCCAA+GGG | 0.638090 | 7.4:+9788774 | MS.gene22482:CDS |
TCTTGCTGGGTGTCTCGACG+AGG | 0.640598 | 7.4:-9787320 | None:intergenic |
CCAAACGTCACCGAAGAGTG+AGG | 0.649993 | 7.4:+9789337 | MS.gene22482:CDS |
CAAAACACCTCTTGACCTTG+CGG | 0.650691 | 7.4:+9788681 | MS.gene22482:CDS |
GGAAGTGGAGAGGAATAGGG+TGG | 0.652742 | 7.4:-9787235 | None:intergenic |
ATATTGGAAGTGCTTCCGCA+AGG | 0.654649 | 7.4:-9788696 | None:intergenic |
AGCCAGAATATTCCTGACAG+CGG | 0.659039 | 7.4:-9787418 | None:intergenic |
ACAAACGCCGCTTCATATGG+CGG | 0.659247 | 7.4:+9788277 | MS.gene22482:CDS |
GCAGCAAATCAAGGTCACAA+AGG | 0.668138 | 7.4:+9787666 | MS.gene22482:CDS |
GCTTCATATGGCGGTCAAAG+GGG | 0.676524 | 7.4:+9788286 | MS.gene22482:CDS |
TGGGTTCGGAAAGAGGAGCG+TGG | 0.686370 | 7.4:-9787191 | None:intergenic |
CAAATGATGGGAACGCTCAG+TGG | 0.691348 | 7.4:+9787453 | MS.gene22482:CDS |
CATTATCATGATCCCCACCA+GGG | 0.695526 | 7.4:-9788999 | None:intergenic |
TGCTGCAACAAATGAAACTG+AGG | 0.698675 | 7.4:-9789202 | None:intergenic |
GAAGTGGAGAGGAATAGGGT+GGG | 0.699796 | 7.4:-9787234 | None:intergenic |
TGAGTTTGATGCTGAAGTTG+CGG | 0.701626 | 7.4:+9787479 | MS.gene22482:CDS |
GCAATGGATCAAAACCAGAG+CGG | 0.786525 | 7.4:-9787638 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATAGAAAAAAAAAAATTG+TGG | + | chr7.4:9787754-9787773 | MS.gene22482:intron | 10.0% |
!! | TGTTATATTACTCAAAATAA+AGG | - | chr7.4:9788543-9788562 | None:intergenic | 15.0% |
!! | ATATTGTCAAGATATTGTTA+GGG | + | chr7.4:9788216-9788235 | MS.gene22482:CDS | 20.0% |
!! | CAAGAAAAAATATGTAAAAC+AGG | + | chr7.4:9787338-9787357 | MS.gene22482:CDS | 20.0% |
!! | GTTATATATATTGTTGTGAA+TGG | + | chr7.4:9787983-9788002 | MS.gene22482:intron | 20.0% |
!!! | TTTACATATTTTTTCTTGCT+GGG | - | chr7.4:9787336-9787355 | None:intergenic | 20.0% |
!!! | TTTTACATATTTTTTCTTGC+TGG | - | chr7.4:9787337-9787356 | None:intergenic | 20.0% |
! | AAAACAAACAAGAATGTGAA+TGG | + | chr7.4:9788862-9788881 | MS.gene22482:CDS | 25.0% |
! | AAACAAACAAGAATGTGAAT+GGG | + | chr7.4:9788863-9788882 | MS.gene22482:CDS | 25.0% |
! | AATAGCATTAGAGATGAAAA+AGG | - | chr7.4:9789061-9789080 | None:intergenic | 25.0% |
! | ATATATATTGTTGTGAATGG+TGG | + | chr7.4:9787986-9788005 | MS.gene22482:intron | 25.0% |
! | GATATTGTCAAGATATTGTT+AGG | + | chr7.4:9788215-9788234 | MS.gene22482:CDS | 25.0% |
! | TTCAAATAACTGTTGTTAGA+GGG | + | chr7.4:9789112-9789131 | MS.gene22482:CDS | 25.0% |
!! | ATTTTATGATCCTAGTCAAT+TGG | + | chr7.4:9788133-9788152 | MS.gene22482:CDS | 25.0% |
AAAATCATAACCTGACTGTT+TGG | - | chr7.4:9787930-9787949 | None:intergenic | 30.0% | |
AAATATGTAAAACAGGTCAC+CGG | + | chr7.4:9787345-9787364 | MS.gene22482:CDS | 30.0% | |
ATCTTTCTTAATCTGAGTCA+TGG | - | chr7.4:9788815-9788834 | None:intergenic | 30.0% | |
CTTATTTCCATAAGCTCTTT+AGG | + | chr7.4:9787799-9787818 | MS.gene22482:intron | 30.0% | |
GTCATTAACCTCATTAACAA+TGG | - | chr7.4:9787517-9787536 | None:intergenic | 30.0% | |
GTTAATGAGGTTAATGACTT+GGG | + | chr7.4:9787519-9787538 | MS.gene22482:CDS | 30.0% | |
GTTCAAATAACTGTTGTTAG+AGG | + | chr7.4:9789111-9789130 | MS.gene22482:CDS | 30.0% | |
TCAAATAACTGTTGTTAGAG+GGG | + | chr7.4:9789113-9789132 | MS.gene22482:CDS | 30.0% | |
TCCAAAATCTCTTCTGATAT+TGG | - | chr7.4:9788715-9788734 | None:intergenic | 30.0% | |
TGTTAATGAGGTTAATGACT+TGG | + | chr7.4:9787518-9787537 | MS.gene22482:CDS | 30.0% | |
TTTACAAGATAGTCCTTCTT+TGG | - | chr7.4:9787616-9787635 | None:intergenic | 30.0% | |
! | GAGATTGATGATCAAATGAT+GGG | + | chr7.4:9787441-9787460 | MS.gene22482:CDS | 30.0% |
! | TATTGCACTTTTCACTTCAT+TGG | + | chr7.4:9789077-9789096 | MS.gene22482:CDS | 30.0% |
! | TCCAATATCAGAAGAGATTT+TGG | + | chr7.4:9788711-9788730 | MS.gene22482:CDS | 30.0% |
! | TCTTCAATGAGTATTGTCAT+AGG | + | chr7.4:9787707-9787726 | MS.gene22482:intron | 30.0% |
! | TGAGATTGATGATCAAATGA+TGG | + | chr7.4:9787440-9787459 | MS.gene22482:CDS | 30.0% |
AAAGAGAAGATCTCAAGGAA+TGG | + | chr7.4:9789363-9789382 | MS.gene22482:CDS | 35.0% | |
AAGGACTCACTTATTCGTTA+TGG | + | chr7.4:9788739-9788758 | MS.gene22482:CDS | 35.0% | |
AATCCTTGTTACTGTTGTAG+GGG | + | chr7.4:9789263-9789282 | MS.gene22482:CDS | 35.0% | |
AGGTGATCAATAAGATGATG+TGG | + | chr7.4:9789163-9789182 | MS.gene22482:CDS | 35.0% | |
ATGAAGTGCATTCTTTCCAT+TGG | - | chr7.4:9788171-9788190 | None:intergenic | 35.0% | |
CAATCCTTGTTACTGTTGTA+GGG | + | chr7.4:9789262-9789281 | MS.gene22482:CDS | 35.0% | |
GCAGCATCTTATATAGTAGT+TGG | + | chr7.4:9789219-9789238 | MS.gene22482:CDS | 35.0% | |
TAGCTATCCTAAAGAGCTTA+TGG | - | chr7.4:9787809-9787828 | None:intergenic | 35.0% | |
TGACAATATCAACATATCCC+TGG | - | chr7.4:9788205-9788224 | None:intergenic | 35.0% | |
TGTCAAGATATTGTTAGGGA+AGG | + | chr7.4:9788220-9788239 | MS.gene22482:CDS | 35.0% | |
TTCATGGCGTAATTCTGATT+CGG | + | chr7.4:9789392-9789411 | MS.gene22482:CDS | 35.0% | |
TTGCATATTGCAGCAAATCA+AGG | + | chr7.4:9787657-9787676 | MS.gene22482:CDS | 35.0% | |
TTTCTCAGCAGCTGTAAAAA+GGG | - | chr7.4:9787553-9787572 | None:intergenic | 35.0% | |
! | ACGTTTTTATCCAAACAGTC+AGG | + | chr7.4:9787917-9787936 | MS.gene22482:intron | 35.0% |
!! | AGAAGAGATTTTGGAGATCA+AGG | + | chr7.4:9788720-9788739 | MS.gene22482:CDS | 35.0% |
!! | TGATTTGCTGCAATATGCAA+TGG | - | chr7.4:9787657-9787676 | None:intergenic | 35.0% |
AAGGTCTGCCATTGTTAATG+AGG | + | chr7.4:9787506-9787525 | MS.gene22482:CDS | 40.0% | |
ACAAGATAGTCCTTCTTTGG+TGG | - | chr7.4:9787613-9787632 | None:intergenic | 40.0% | |
AGAAACCACAGTTACAGAGT+TGG | - | chr7.4:9788938-9788957 | None:intergenic | 40.0% | |
AGTGTAACTGCAAAACCATG+AGG | + | chr7.4:9788470-9788489 | MS.gene22482:intron | 40.0% | |
ATCCTTGTTACTGTTGTAGG+GGG | + | chr7.4:9789264-9789283 | MS.gene22482:CDS | 40.0% | |
ATGCTGAAGTTGCGGATATA+AGG | + | chr7.4:9787487-9787506 | MS.gene22482:CDS | 40.0% | |
CAAGGAATGGAACACATTCA+TGG | + | chr7.4:9789376-9789395 | MS.gene22482:CDS | 40.0% | |
CTAGCTATCTCCAATTGACT+AGG | - | chr7.4:9788146-9788165 | None:intergenic | 40.0% | |
CTATCTTGTAAAAACCGCTC+TGG | + | chr7.4:9787624-9787643 | MS.gene22482:CDS | 40.0% | |
CTTTCTCAGCAGCTGTAAAA+AGG | - | chr7.4:9787554-9787573 | None:intergenic | 40.0% | |
GCAATCCTTGTTACTGTTGT+AGG | + | chr7.4:9789261-9789280 | MS.gene22482:CDS | 40.0% | |
GGAAGAAAGAGAAGATCTCA+AGG | + | chr7.4:9789358-9789377 | MS.gene22482:CDS | 40.0% | |
GGAGATAAAGTCTGAGAGAA+GGG | + | chr7.4:9789134-9789153 | MS.gene22482:CDS | 40.0% | |
TATAACTAGCGAACTCCTCA+TGG | - | chr7.4:9788488-9788507 | None:intergenic | 40.0% | |
TCTCTTTCTTCCTCACTCTT+CGG | - | chr7.4:9789350-9789369 | None:intergenic | 40.0% | |
TGAGTTTGATGCTGAAGTTG+CGG | + | chr7.4:9787479-9787498 | MS.gene22482:CDS | 40.0% | |
TGCTGCAACAAATGAAACTG+AGG | - | chr7.4:9789205-9789224 | None:intergenic | 40.0% | |
TTGGAGATAGCTAGATCCAA+TGG | + | chr7.4:9788152-9788171 | MS.gene22482:CDS | 40.0% | |
! | AGTCCTTCTTTGGTGGTATA+AGG | - | chr7.4:9787606-9787625 | None:intergenic | 40.0% |
! | CTTTTTACAGCTGCTGAGAA+AGG | + | chr7.4:9787552-9787571 | MS.gene22482:CDS | 40.0% |
! | GCAAATGTCTTGATTAGCTC+TGG | - | chr7.4:9788044-9788063 | None:intergenic | 40.0% |
! | GTCCTTCTTTGGTGGTATAA+GGG | - | chr7.4:9787605-9787624 | None:intergenic | 40.0% |
! | TGTTTTGTGGTCTCTTGTGA+GGG | - | chr7.4:9788668-9788687 | None:intergenic | 40.0% |
!! | ACTTTTCACTTCATTGGCTG+TGG | + | chr7.4:9789083-9789102 | MS.gene22482:CDS | 40.0% |
!! | ATTGTAATGGGTGGTGTTCT+TGG | + | chr7.4:9789288-9789307 | MS.gene22482:CDS | 40.0% |
!! | GGTTTCTGTGCTATTTGCAA+CGG | + | chr7.4:9788951-9788970 | MS.gene22482:CDS | 40.0% |
!! | TCTTGATTAGCTCTGGATCA+TGG | - | chr7.4:9788037-9788056 | None:intergenic | 40.0% |
AAGTTGCTTCTTGCTGCTGA+TGG | + | chr7.4:9788326-9788345 | MS.gene22482:CDS | 45.0% | |
ACTTCATTTATCTGCACGCC+AGG | + | chr7.4:9788184-9788203 | MS.gene22482:CDS | 45.0% | |
AGCCAGAATATTCCTGACAG+CGG | - | chr7.4:9787421-9787440 | None:intergenic | 45.0% | |
CAAAACACCTCTTGACCTTG+CGG | + | chr7.4:9788681-9788700 | MS.gene22482:CDS | 45.0% | |
CAAAGGGGTTAACTGTGAAG+TGG | + | chr7.4:9788301-9788320 | MS.gene22482:CDS | 45.0% | |
CAATGATCTCAACCAGCCAA+GGG | + | chr7.4:9788774-9788793 | MS.gene22482:CDS | 45.0% | |
CATTATCATGATCCCCACCA+GGG | - | chr7.4:9789002-9789021 | None:intergenic | 45.0% | |
CTCCCTTATACCACCAAAGA+AGG | + | chr7.4:9787600-9787619 | MS.gene22482:CDS | 45.0% | |
CTGGTGGGGATCATGATAAT+GGG | + | chr7.4:9789001-9789020 | MS.gene22482:CDS | 45.0% | |
CTTCATTTATCTGCACGCCA+GGG | + | chr7.4:9788185-9788204 | MS.gene22482:CDS | 45.0% | |
GAATGTGAATGGGATTGCCA+AGG | + | chr7.4:9788873-9788892 | MS.gene22482:CDS | 45.0% | |
GCAATGGATCAAAACCAGAG+CGG | - | chr7.4:9787641-9787660 | None:intergenic | 45.0% | |
GCAGCAAATCAAGGTCACAA+AGG | + | chr7.4:9787666-9787685 | MS.gene22482:CDS | 45.0% | |
GCAGTATTGCCAAACTTGTC+AGG | - | chr7.4:9788368-9788387 | None:intergenic | 45.0% | |
GCCAGAATTGGAAATGACGA+GGG | - | chr7.4:9787295-9787314 | None:intergenic | 45.0% | |
GCTCGAAGGACTGATAAGAA+AGG | + | chr7.4:9788254-9788273 | MS.gene22482:CDS | 45.0% | |
GGAAATGACGAGGGATTTGT+TGG | - | chr7.4:9787286-9787305 | None:intergenic | 45.0% | |
GGGAGATAAAGTCTGAGAGA+AGG | + | chr7.4:9789133-9789152 | MS.gene22482:CDS | 45.0% | |
GTCATGCTTCCTGACAAGTT+TGG | + | chr7.4:9788356-9788375 | MS.gene22482:CDS | 45.0% | |
GTTGGAGTTGGAGACAAGAA+GGG | - | chr7.4:9787268-9787287 | None:intergenic | 45.0% | |
GTTGTAGGGGGGATTGTAAT+GGG | + | chr7.4:9789276-9789295 | MS.gene22482:CDS | 45.0% | |
TCCCTCGTCATTTCCAATTC+TGG | + | chr7.4:9787291-9787310 | MS.gene22482:CDS | 45.0% | |
TCCTTGTTACTGTTGTAGGG+GGG | + | chr7.4:9789265-9789284 | MS.gene22482:CDS | 45.0% | |
TGCAACTCCTCTTGTATCTG+CGG | + | chr7.4:9788073-9788092 | MS.gene22482:CDS | 45.0% | |
TGCCAGAATTGGAAATGACG+AGG | - | chr7.4:9787296-9787315 | None:intergenic | 45.0% | |
TGCTACCAACTCTGTAACTG+TGG | + | chr7.4:9788930-9788949 | MS.gene22482:CDS | 45.0% | |
TGTTGGAGTTGGAGACAAGA+AGG | - | chr7.4:9787269-9787288 | None:intergenic | 45.0% | |
TGTTGTAGGGGGGATTGTAA+TGG | + | chr7.4:9789275-9789294 | MS.gene22482:CDS | 45.0% | |
TTGTATCTGCGGCTACAAGA+GGG | + | chr7.4:9788084-9788103 | MS.gene22482:CDS | 45.0% | |
! | GTGTTTTGTGGTCTCTTGTG+AGG | - | chr7.4:9788669-9788688 | None:intergenic | 45.0% |
! | TTTCACTTCATTGGCTGTGG+TGG | + | chr7.4:9789086-9789105 | MS.gene22482:CDS | 45.0% |
!! | ATATTGGAAGTGCTTCCGCA+AGG | - | chr7.4:9788699-9788718 | None:intergenic | 45.0% |
!! | TGATAATGGGATGGCTGTGA+TGG | + | chr7.4:9789014-9789033 | MS.gene22482:CDS | 45.0% |
!! | TGGGGATCATGATAATGGGA+TGG | + | chr7.4:9789005-9789024 | MS.gene22482:CDS | 45.0% |
!!! | CAAGGTCAAGAGGTGTTTTG+TGG | - | chr7.4:9788681-9788700 | None:intergenic | 45.0% |
ACAAACGCCGCTTCATATGG+CGG | + | chr7.4:9788277-9788296 | MS.gene22482:CDS | 50.0% | |
ACCCTATTCCTCTCCACTTC+CGG | + | chr7.4:9787237-9787256 | MS.gene22482:CDS | 50.0% | |
AGAGGAATAGGGTGGGTCTA+GGG | - | chr7.4:9787230-9787249 | None:intergenic | 50.0% | |
AGGACAAACGCCGCTTCATA+TGG | + | chr7.4:9788274-9788293 | MS.gene22482:CDS | 50.0% | |
ATGTAGCCACCAGGAAGAAG+AGG | + | chr7.4:9788393-9788412 | MS.gene22482:CDS | 50.0% | |
CCAATGATCTCAACCAGCCA+AGG | + | chr7.4:9788773-9788792 | MS.gene22482:CDS | 50.0% | |
CCATTATCATGATCCCCACC+AGG | - | chr7.4:9789003-9789022 | None:intergenic | 50.0% | |
CCTGGTGGGGATCATGATAA+TGG | + | chr7.4:9789000-9789019 | MS.gene22482:CDS | 50.0% | |
CCTTTGACCGCCATATGAAG+CGG | - | chr7.4:9788287-9788306 | None:intergenic | 50.0% | |
CGCTTCATATGGCGGTCAAA+GGG | + | chr7.4:9788285-9788304 | MS.gene22482:CDS | 50.0% | |
CTCAGCAGCTGTAAAAAGGG+CGG | - | chr7.4:9787550-9787569 | None:intergenic | 50.0% | |
CTTGTAGCCGCAGATACAAG+AGG | - | chr7.4:9788083-9788102 | None:intergenic | 50.0% | |
CTTGTATCTGCGGCTACAAG+AGG | + | chr7.4:9788083-9788102 | MS.gene22482:CDS | 50.0% | |
GAAGTGGAGAGGAATAGGGT+GGG | - | chr7.4:9787237-9787256 | None:intergenic | 50.0% | |
GCTTCATATGGCGGTCAAAG+GGG | + | chr7.4:9788286-9788305 | MS.gene22482:CDS | 50.0% | |
GTCTGAGAGAAGGGTTACAG+AGG | + | chr7.4:9789143-9789162 | MS.gene22482:CDS | 50.0% | |
TAACAAGGATTGCAGCCCAC+AGG | - | chr7.4:9789254-9789273 | None:intergenic | 50.0% | |
TACCTCTACCCTCTTCTTCC+TGG | - | chr7.4:9788405-9788424 | None:intergenic | 50.0% | |
TCCCCCCTACAACAGTAACA+AGG | - | chr7.4:9789269-9789288 | None:intergenic | 50.0% | |
TGCCGCTGTCAGGAATATTC+TGG | + | chr7.4:9787416-9787435 | MS.gene22482:CDS | 50.0% | |
TGTAGCCACCAGGAAGAAGA+GGG | + | chr7.4:9788394-9788413 | MS.gene22482:CDS | 50.0% | |
! | ACTTTTCACAGTCCCTGGTG+GGG | + | chr7.4:9788987-9789006 | MS.gene22482:CDS | 50.0% |
! | CAAATGATGGGAACGCTCAG+TGG | + | chr7.4:9787453-9787472 | MS.gene22482:CDS | 50.0% |
! | CACTTTTCACAGTCCCTGGT+GGG | + | chr7.4:9788986-9789005 | MS.gene22482:CDS | 50.0% |
! | CCTTGGCTGGTTGAGATCAT+TGG | - | chr7.4:9788776-9788795 | None:intergenic | 50.0% |
!! | CTCGGTGTCATTATGACGAC+CGG | - | chr7.4:9787367-9787386 | None:intergenic | 50.0% |
!! | GACGAGGGATTTGTTGGAGT+TGG | - | chr7.4:9787280-9787299 | None:intergenic | 50.0% |
!! | TCTTGTGAGGGCATTCGCAT+TGG | - | chr7.4:9788656-9788675 | None:intergenic | 50.0% |
AAGAAGGGCTTTGCCGGAAG+TGG | - | chr7.4:9787253-9787272 | None:intergenic | 55.0% | |
AGTGCTTCCGCAAGGTCAAG+AGG | - | chr7.4:9788691-9788710 | None:intergenic | 55.0% | |
CACCAGGAAGAAGAGGGTAG+AGG | + | chr7.4:9788400-9788419 | MS.gene22482:CDS | 55.0% | |
CCAAACGTCACCGAAGAGTG+AGG | + | chr7.4:9789337-9789356 | MS.gene22482:CDS | 55.0% | |
CCGCTTCATATGGCGGTCAA+AGG | + | chr7.4:9788284-9788303 | MS.gene22482:CDS | 55.0% | |
CCTCACTCTTCGGTGACGTT+TGG | - | chr7.4:9789340-9789359 | None:intergenic | 55.0% | |
CTACGCAAGTTGCACAGAGC+AGG | + | chr7.4:9788898-9788917 | MS.gene22482:CDS | 55.0% | |
CTCTACCCTCTTCTTCCTGG+TGG | - | chr7.4:9788402-9788421 | None:intergenic | 55.0% | |
CTGCATTGCATGTAGCCACC+AGG | + | chr7.4:9788384-9788403 | MS.gene22482:CDS | 55.0% | |
GAGAGGAATAGGGTGGGTCT+AGG | - | chr7.4:9787231-9787250 | None:intergenic | 55.0% | |
GAGGAATAGGGTGGGTCTAG+GGG | - | chr7.4:9787229-9787248 | None:intergenic | 55.0% | |
GCCGGAAGTGGAGAGGAATA+GGG | - | chr7.4:9787241-9787260 | None:intergenic | 55.0% | |
GGAAGTGGAGAGGAATAGGG+TGG | - | chr7.4:9787238-9787257 | None:intergenic | 55.0% | |
GGAGACAAGAAGGGCTTTGC+CGG | - | chr7.4:9787259-9787278 | None:intergenic | 55.0% | |
GTGCAACTTGCGTAGCTCCT+TGG | - | chr7.4:9788893-9788912 | None:intergenic | 55.0% | |
TCAGTCCTTCGAGCAAGCTG+CGG | - | chr7.4:9788248-9788267 | None:intergenic | 55.0% | |
TGCCGGAAGTGGAGAGGAAT+AGG | - | chr7.4:9787242-9787261 | None:intergenic | 55.0% | |
TTGCGCGGCAAGATGAAGCT+CGG | - | chr7.4:9787385-9787404 | None:intergenic | 55.0% | |
! | AGGGCATTCGCATTGGTGTC+GGG | - | chr7.4:9788649-9788668 | None:intergenic | 55.0% |
! | CACTTCATTGGCTGTGGTGG+TGG | + | chr7.4:9789089-9789108 | MS.gene22482:CDS | 55.0% |
! | GACGAGGCGTTTGCCAGAAT+TGG | - | chr7.4:9787307-9787326 | None:intergenic | 55.0% |
! | GCACTTTTCACAGTCCCTGG+TGG | + | chr7.4:9788985-9789004 | MS.gene22482:CDS | 55.0% |
! | GCAGCACTTTTCACAGTCCC+TGG | + | chr7.4:9788982-9789001 | MS.gene22482:CDS | 55.0% |
! | GTAGGGGGGATTGTAATGGG+TGG | + | chr7.4:9789279-9789298 | MS.gene22482:CDS | 55.0% |
! | GTTTTCCTCAGCTCGTCCCT+TGG | - | chr7.4:9788793-9788812 | None:intergenic | 55.0% |
! | TGCGGCTACAAGAGGGCATA+CGG | + | chr7.4:9788091-9788110 | MS.gene22482:CDS | 55.0% |
!! | GAGGGCATTCGCATTGGTGT+CGG | - | chr7.4:9788650-9788669 | None:intergenic | 55.0% |
AGTTGGTCGACGCAGCCTGT+GGG | + | chr7.4:9789236-9789255 | MS.gene22482:CDS | 60.0% | |
CAGTCCTTCGAGCAAGCTGC+GGG | - | chr7.4:9788247-9788266 | None:intergenic | 60.0% | |
CTTCATCTTGCCGCGCAACG+CGG | + | chr7.4:9787387-9787406 | MS.gene22482:CDS | 60.0% | |
GAATAGGGTGGGTCTAGGGG+TGG | - | chr7.4:9787226-9787245 | None:intergenic | 60.0% | |
TAGTTGGTCGACGCAGCCTG+TGG | + | chr7.4:9789235-9789254 | MS.gene22482:CDS | 60.0% | |
TCTAGGGGTGGTTGGGGTGT+TGG | - | chr7.4:9787214-9787233 | None:intergenic | 60.0% | |
TCTTGCTGGGTGTCTCGACG+AGG | - | chr7.4:9787323-9787342 | None:intergenic | 60.0% | |
TGGGTTCGGAAAGAGGAGCG+TGG | - | chr7.4:9787194-9787213 | None:intergenic | 60.0% | |
! | CTAGGGGTGGTTGGGGTGTT+GGG | - | chr7.4:9787213-9787232 | None:intergenic | 60.0% |
! | TTCGGAAAGAGGAGCGTGGC+CGG | - | chr7.4:9787190-9787209 | None:intergenic | 60.0% |
!! | GGGGTGTTGGGTTCGGAAAG+AGG | - | chr7.4:9787201-9787220 | None:intergenic | 60.0% |
!! | GGTGGTTGGGGTGTTGGGTT+CGG | - | chr7.4:9787208-9787227 | None:intergenic | 60.0% |
ACCAGCCAAGGGACGAGCTG+AGG | + | chr7.4:9788785-9788804 | MS.gene22482:CDS | 65.0% | |
AGGGTGGGTCTAGGGGTGGT+TGG | - | chr7.4:9787222-9787241 | None:intergenic | 65.0% | |
GGGCTTTGCCGGAAGTGGAG+AGG | - | chr7.4:9787248-9787267 | None:intergenic | 65.0% | |
GGGTGGGTCTAGGGGTGGTT+GGG | - | chr7.4:9787221-9787240 | None:intergenic | 65.0% | |
GGTGGGTCTAGGGGTGGTTG+GGG | - | chr7.4:9787220-9787239 | None:intergenic | 65.0% | |
TCCTCAGCTCGTCCCTTGGC+TGG | - | chr7.4:9788789-9788808 | None:intergenic | 65.0% | |
! | AGGACCCGCAGCTTGCTCGA+AGG | + | chr7.4:9788240-9788259 | MS.gene22482:CDS | 65.0% |
GCGGTGATGCTGCCGCTGTC+AGG | + | chr7.4:9787406-9787425 | MS.gene22482:CDS | 70.0% | |
GGCAGCATCACCGCGTTGCG+CGG | - | chr7.4:9787400-9787419 | None:intergenic | 70.0% | |
! | AAAGAGGAGCGTGGCCGGCG+GGG | - | chr7.4:9787185-9787204 | None:intergenic | 70.0% |
! | GAAAGAGGAGCGTGGCCGGC+GGG | - | chr7.4:9787186-9787205 | None:intergenic | 70.0% |
! | GGAAAGAGGAGCGTGGCCGG+CGG | - | chr7.4:9787187-9787206 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 9787174 | 9789446 | 9787174 | ID=MS.gene22482 |
chr7.4 | mRNA | 9787174 | 9789446 | 9787174 | ID=MS.gene22482.t1;Parent=MS.gene22482 |
chr7.4 | exon | 9787174 | 9787687 | 9787174 | ID=MS.gene22482.t1.exon1;Parent=MS.gene22482.t1 |
chr7.4 | CDS | 9787174 | 9787687 | 9787174 | ID=cds.MS.gene22482.t1;Parent=MS.gene22482.t1 |
chr7.4 | exon | 9788012 | 9788421 | 9788012 | ID=MS.gene22482.t1.exon2;Parent=MS.gene22482.t1 |
chr7.4 | CDS | 9788012 | 9788421 | 9788012 | ID=cds.MS.gene22482.t1;Parent=MS.gene22482.t1 |
chr7.4 | exon | 9788622 | 9789446 | 9788622 | ID=MS.gene22482.t1.exon3;Parent=MS.gene22482.t1 |
chr7.4 | CDS | 9788622 | 9789446 | 9788622 | ID=cds.MS.gene22482.t1;Parent=MS.gene22482.t1 |
Gene Sequence |
Protein sequence |