Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029697.t1 | XP_003590416.1 | 98.8 | 580 | 6 | 1 | 79 | 657 | 79 | 658 | 1.70E-307 | 1064.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029697.t1 | F4I2J8 | 71.0 | 620 | 130 | 3 | 87 | 657 | 98 | 716 | 1.7e-231 | 803.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029697.t1 | G7IA50 | 98.8 | 580 | 6 | 1 | 79 | 657 | 79 | 658 | 1.3e-307 | 1064.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024669 | MS.gene029697 | PPI |
| MS.gene071985 | MS.gene029697 | PPI |
| MS.gene75072 | MS.gene029697 | PPI |
| MS.gene029697 | MS.gene002130 | PPI |
| MS.gene030285 | MS.gene029697 | PPI |
| MS.gene029697 | MS.gene22321 | PPI |
| MS.gene072740 | MS.gene029697 | PPI |
| MS.gene047123 | MS.gene029697 | PPI |
| MS.gene029697 | MS.gene66329 | PPI |
| MS.gene66321 | MS.gene029697 | PPI |
| MS.gene21651 | MS.gene029697 | PPI |
| MS.gene064051 | MS.gene029697 | PPI |
| MS.gene01671 | MS.gene029697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029697.t1 | MTR_1g061860 | 98.024 | 658 | 12 | 1 | 1 | 657 | 1 | 658 | 0.0 | 1322 |
| MS.gene029697.t1 | MTR_7g102700 | 84.526 | 601 | 85 | 4 | 62 | 657 | 50 | 647 | 0.0 | 1043 |
| MS.gene029697.t1 | MTR_7g102700 | 84.053 | 602 | 87 | 3 | 62 | 657 | 50 | 648 | 0.0 | 1042 |
| MS.gene029697.t1 | MTR_7g102700 | 83.485 | 551 | 83 | 4 | 112 | 657 | 9 | 556 | 0.0 | 939 |
| MS.gene029697.t1 | MTR_7g102700 | 82.971 | 552 | 85 | 3 | 112 | 657 | 9 | 557 | 0.0 | 938 |
| MS.gene029697.t1 | MTR_0130s0060 | 67.347 | 49 | 16 | 0 | 76 | 124 | 182 | 230 | 6.29e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029697.t1 | AT1G03910 | 75.809 | 587 | 138 | 1 | 75 | 657 | 86 | 672 | 0.0 | 932 |
| MS.gene029697.t1 | AT1G03910 | 70.523 | 631 | 138 | 2 | 75 | 657 | 86 | 716 | 0.0 | 911 |
| MS.gene029697.t1 | AT2G36815 | 52.577 | 97 | 32 | 2 | 282 | 377 | 17 | 100 | 4.72e-21 | 89.0 |
| MS.gene029697.t1 | AT2G36815 | 53.125 | 96 | 31 | 2 | 283 | 377 | 24 | 106 | 5.39e-21 | 89.0 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATGCTTGCGTAACATTT+TGG | 0.170202 | 1.2:+47227957 | None:intergenic |
| TTCTTGACCCTCTGCTTTAA+TGG | 0.192895 | 1.2:+47227707 | None:intergenic |
| TGCAATACAGGCTTGTTTAA+AGG | 0.200086 | 1.2:-47227989 | MS.gene029697:intron |
| AGCTCAGTATTTGGCGAAAA+AGG | 0.258558 | 1.2:-47233732 | MS.gene029697:CDS |
| CCCTCTGCTTTAATGGGTTC+GGG | 0.271684 | 1.2:+47227714 | None:intergenic |
| ACCCTCTGCTTTAATGGGTT+CGG | 0.272032 | 1.2:+47227713 | None:intergenic |
| ATCAGAGGGTGAAGATAAAT+TGG | 0.274595 | 1.2:-47227917 | MS.gene029697:CDS |
| CGCCAACCCATGTAGAATAT+TGG | 0.284425 | 1.2:-47230248 | MS.gene029697:CDS |
| GTTGAAATACTTTGGTTTCC+TGG | 0.284593 | 1.2:+47226452 | None:intergenic |
| AATAGCTCCCATAGCCTTCA+TGG | 0.287973 | 1.2:+47227392 | None:intergenic |
| TCTTGATGGCTCTGATGATT+TGG | 0.289649 | 1.2:-47231319 | MS.gene029697:CDS |
| TGCAGAATTGGAAGCTTTGC+AGG | 0.295132 | 1.2:-47228195 | MS.gene029697:CDS |
| TCTTGACCCTCTGCTTTAAT+GGG | 0.310995 | 1.2:+47227708 | None:intergenic |
| CACTCCTTCTGGTGAGTGAT+TGG | 0.313594 | 1.2:-47228364 | MS.gene029697:CDS |
| ATGCTATTTGTAGGTTTGTT+TGG | 0.327045 | 1.2:-47232193 | MS.gene029697:intron |
| TGTGTCTTGTCTACAAGGTC+TGG | 0.329849 | 1.2:+47226324 | None:intergenic |
| ACGTGCTCGAGCTGAGTTCC+AGG | 0.339829 | 1.2:-47231535 | MS.gene029697:CDS |
| CTTCATGCAGGCACTCCTTC+TGG | 0.341193 | 1.2:-47228375 | MS.gene029697:intron |
| TTAACTGAAAATTCATCAAT+AGG | 0.343796 | 1.2:+47232134 | None:intergenic |
| GACTTACTTCTCATTAAGAT+TGG | 0.354150 | 1.2:+47233375 | None:intergenic |
| TCATCACCATGAAACAGTTC+TGG | 0.358787 | 1.2:+47227651 | None:intergenic |
| TTATACCCTTGTACAACCTT+TGG | 0.359525 | 1.2:+47226363 | None:intergenic |
| AGAGCAGCAGAGACGAATTC+AGG | 0.361317 | 1.2:-47227466 | MS.gene029697:CDS |
| CACCCTCTGATGGTTTCTTA+AGG | 0.361872 | 1.2:+47227929 | None:intergenic |
| TATTTCAACCGTGTTCATAC+TGG | 0.366794 | 1.2:-47226438 | MS.gene029697:CDS |
| CTGATGATAGTAGTAGTGAT+AGG | 0.370578 | 1.2:-47233802 | MS.gene029697:CDS |
| AAAGTGATCTCTTTGCATAT+TGG | 0.373779 | 1.2:+47227739 | None:intergenic |
| TGCAAAAGCTTCTTCACATC+TGG | 0.376117 | 1.2:+47228230 | None:intergenic |
| CTCTGGTGCAGAAGTAAATC+TGG | 0.379600 | 1.2:-47227346 | MS.gene029697:CDS |
| AGAGGAAATAGCTCAGTATT+TGG | 0.382147 | 1.2:-47233741 | MS.gene029697:CDS |
| CAGCAAAGCTTGTTGAGTAC+TGG | 0.391117 | 1.2:-47228142 | MS.gene029697:CDS |
| GAAGAAGGAGATGTAATGTT+TGG | 0.391656 | 1.2:-47227369 | MS.gene029697:CDS |
| TGATGATATCAAAATGCATT+TGG | 0.392676 | 1.2:-47230286 | MS.gene029697:CDS |
| GGGGAAGACACATGCAGAAT+TGG | 0.400110 | 1.2:-47228207 | MS.gene029697:CDS |
| AGAAAGAAGGAGAAGGAAAT+CGG | 0.400976 | 1.2:-47233957 | MS.gene029697:CDS |
| ATCCTTACCAAACATCTTGA+TGG | 0.402365 | 1.2:-47231333 | MS.gene029697:CDS |
| TCCGCATTGTAAACAAAGAA+TGG | 0.405433 | 1.2:-47226134 | MS.gene029697:CDS |
| TTGAAGGCTCATACTGTGTC+TGG | 0.405951 | 1.2:-47233430 | MS.gene029697:CDS |
| GAGCTTGTGTCTTGTCTACA+AGG | 0.410873 | 1.2:+47226319 | None:intergenic |
| GCCAACCCATGTAGAATATT+GGG | 0.412226 | 1.2:-47230247 | MS.gene029697:CDS |
| AAATGCATTTGGACTTTGAC+AGG | 0.412773 | 1.2:-47230275 | MS.gene029697:CDS |
| ACTCCTTCTGGTGAGTGATT+GGG | 0.418323 | 1.2:-47228363 | MS.gene029697:CDS |
| ATCAGAGCCATCAAGATGTT+TGG | 0.429860 | 1.2:+47231326 | None:intergenic |
| TACCCTTGTACAACCTTTGG+AGG | 0.431571 | 1.2:+47226366 | None:intergenic |
| TCAAATGACTCGAATCCATT+TGG | 0.433737 | 1.2:-47233403 | MS.gene029697:CDS |
| ATGAAACAGTTCTGGTGAAA+AGG | 0.440946 | 1.2:+47227659 | None:intergenic |
| AAATGTTGGCGCAGGTCTAT+TGG | 0.444124 | 1.2:-47226494 | MS.gene029697:intron |
| AGTAGAGCTCTGTCCTCTTC+AGG | 0.445180 | 1.2:+47227609 | None:intergenic |
| GAAAGTTGCTAAGAAATTGA+AGG | 0.448557 | 1.2:-47233446 | MS.gene029697:CDS |
| TGAAGAGGACAGAGCTCTAC+TGG | 0.451227 | 1.2:-47227607 | MS.gene029697:intron |
| TTGAAATACTTTGGTTTCCT+GGG | 0.453521 | 1.2:+47226453 | None:intergenic |
| TGAACACGGTTGAAATACTT+TGG | 0.455750 | 1.2:+47226444 | None:intergenic |
| AGCACGACATGAGGAAGAAA+TGG | 0.455954 | 1.2:-47231755 | MS.gene029697:intron |
| TGAACCATACATGGTCTTCA+AGG | 0.457998 | 1.2:-47231283 | MS.gene029697:intron |
| TTAACCTTGAAGACCATGTA+TGG | 0.458201 | 1.2:+47231279 | None:intergenic |
| GTAGTAGTGATAGGGATGGT+AGG | 0.460746 | 1.2:-47233793 | MS.gene029697:CDS |
| GAAATCTGAGGAGGATATTG+AGG | 0.461280 | 1.2:-47227878 | MS.gene029697:CDS |
| TGTTCAGCAAGCACCTCGGC+TGG | 0.461619 | 1.2:+47228278 | None:intergenic |
| GTGTCTTGTCTACAAGGTCT+GGG | 0.462415 | 1.2:+47226325 | None:intergenic |
| CCGCATTGTAAACAAAGAAT+GGG | 0.467266 | 1.2:-47226133 | MS.gene029697:CDS |
| AAAGAGACAGAGAGAAAGGA+TGG | 0.468118 | 1.2:-47232102 | MS.gene029697:intron |
| TGGGAATATTCTCACAAGAA+AGG | 0.469421 | 1.2:-47226114 | MS.gene029697:CDS |
| GAGACGGAGCCGACATGAAT+CGG | 0.472964 | 1.2:-47233843 | MS.gene029697:CDS |
| AATTTATCTTCACCCTCTGA+TGG | 0.482921 | 1.2:+47227919 | None:intergenic |
| CACTATGGTGACCACTCCTC+CGG | 0.484550 | 1.2:+47233882 | None:intergenic |
| ATTGGTGGCATGACAAATAC+AGG | 0.484625 | 1.2:-47226476 | MS.gene029697:CDS |
| GGTAAGGATATCAATTGGCT+TGG | 0.490758 | 1.2:+47231347 | None:intergenic |
| AAATTATCTTCAGATGGAGC+AGG | 0.490796 | 1.2:+47227426 | None:intergenic |
| TGTTTGGTAAGGATATCAAT+TGG | 0.493901 | 1.2:+47231342 | None:intergenic |
| ATTGAGCGTGATGTTGTTCA+AGG | 0.501715 | 1.2:-47232161 | MS.gene029697:CDS |
| ATCTCAAAATTATCTTCAGA+TGG | 0.502531 | 1.2:+47227420 | None:intergenic |
| CCTTGTACAACCTTTGGAGG+TGG | 0.503514 | 1.2:+47226369 | None:intergenic |
| CCACCTCCAAAGGTTGTACA+AGG | 0.506231 | 1.2:-47226369 | MS.gene029697:CDS |
| TTAAGATTGGAATCACCAAA+TGG | 0.507057 | 1.2:+47233388 | None:intergenic |
| TCCTTCTCAATAGTGTAAGT+TGG | 0.508185 | 1.2:+47226297 | None:intergenic |
| GATGAAAGCCATGAAGGCTA+TGG | 0.508933 | 1.2:-47227400 | MS.gene029697:CDS |
| AGCAAAGCTTGTTGAGTACT+GGG | 0.510191 | 1.2:-47228141 | MS.gene029697:CDS |
| GGTGAAGTAGAAGATGAGGC+TGG | 0.513288 | 1.2:-47227684 | MS.gene029697:CDS |
| GGGTTTGACAGTGAACGAAA+TGG | 0.515774 | 1.2:-47230319 | MS.gene029697:CDS |
| AAGATGCAATTGATCGAGCT+AGG | 0.518701 | 1.2:-47228319 | MS.gene029697:CDS |
| GGATTGCGAAGAAGTTGATT+CGG | 0.520984 | 1.2:+47233922 | None:intergenic |
| TCGAGCTGAGTTCCAGGACT+GGG | 0.522136 | 1.2:-47231529 | MS.gene029697:CDS |
| CCAGAAATTATCTGCGGTAG+CGG | 0.525395 | 1.2:+47226034 | None:intergenic |
| GGCATGACAAATACAGGCCC+AGG | 0.525776 | 1.2:-47226470 | MS.gene029697:CDS |
| CTCGAGCTGAGTTCCAGGAC+TGG | 0.526610 | 1.2:-47231530 | MS.gene029697:CDS |
| AATGCAGGCGGAAATTGAAA+AGG | 0.529839 | 1.2:-47231812 | MS.gene029697:intron |
| CCGATGATTCCGATAGAATC+CGG | 0.534725 | 1.2:-47233901 | MS.gene029697:CDS |
| ACCACTCCTCCGGATTCTAT+CGG | 0.536244 | 1.2:+47233892 | None:intergenic |
| AGAAGTAAATCTGGATTCAC+AGG | 0.541558 | 1.2:-47227337 | MS.gene029697:intron |
| TCTGTGACCGCCGATCACTA+TGG | 0.542891 | 1.2:+47233867 | None:intergenic |
| CTTCGTATGGTGGCCCTGCA+TGG | 0.548737 | 1.2:+47226241 | None:intergenic |
| TGCATCATCAGATTCCATGC+AGG | 0.548950 | 1.2:-47226255 | MS.gene029697:CDS |
| TGATGATAGTAGTAGTGATA+GGG | 0.552104 | 1.2:-47233801 | MS.gene029697:CDS |
| CTCAAGGAAAATTACTGAAG+AGG | 0.557543 | 1.2:-47233759 | MS.gene029697:CDS |
| GAATGGGTAGGAAAGAAAGA+AGG | 0.558466 | 1.2:-47233970 | MS.gene029697:CDS |
| AGAAATAAATGAACCATACA+TGG | 0.559048 | 1.2:-47231292 | MS.gene029697:CDS |
| ATACCTCCCAATATTCTACA+TGG | 0.559393 | 1.2:+47230241 | None:intergenic |
| TCCCAATATTCTACATGGGT+TGG | 0.568443 | 1.2:+47230246 | None:intergenic |
| CCGGATTCTATCGGAATCAT+CGG | 0.570818 | 1.2:+47233901 | None:intergenic |
| AGCCATCAAGATGTTTGGTA+AGG | 0.571050 | 1.2:+47231331 | None:intergenic |
| GCTATGGGAGCTATTGAAGA+AGG | 0.572049 | 1.2:-47227384 | MS.gene029697:CDS |
| ATGAAAGCCATGAAGGCTAT+GGG | 0.576335 | 1.2:-47227399 | MS.gene029697:CDS |
| ATTAAAGCAGAGGGTCAAGA+AGG | 0.580470 | 1.2:-47227705 | MS.gene029697:CDS |
| AGACTTACAATGTCTTCGTA+TGG | 0.580822 | 1.2:+47226228 | None:intergenic |
| TCAGCAAGCACCTCGGCTGG+AGG | 0.583261 | 1.2:+47228281 | None:intergenic |
| ATTGAGAAGGATGGCAGCAA+TGG | 0.585083 | 1.2:-47226285 | MS.gene029697:CDS |
| GAAATTATCTGCGGTAGCGG+TGG | 0.585724 | 1.2:+47226037 | None:intergenic |
| AGAAGGTGAAGTAGAAGATG+AGG | 0.586312 | 1.2:-47227688 | MS.gene029697:CDS |
| CCCGAACCCATTAAAGCAGA+GGG | 0.588808 | 1.2:-47227714 | MS.gene029697:CDS |
| ATTGAGTCAGAAATGCGTAC+TGG | 0.589102 | 1.2:-47228167 | MS.gene029697:CDS |
| CCCATTCTTTGTTTACAATG+CGG | 0.589870 | 1.2:+47226133 | None:intergenic |
| TCCGATAGAATCCGGAGGAG+TGG | 0.590097 | 1.2:-47233893 | MS.gene029697:CDS |
| GGAGATGTAATGTTTGGCTC+TGG | 0.590473 | 1.2:-47227363 | MS.gene029697:CDS |
| CTGAGAAGAATAGAATGGGT+AGG | 0.591313 | 1.2:-47233982 | None:intergenic |
| TTACCTTGGCTTTATATATG+CGG | 0.592230 | 1.2:+47228099 | None:intergenic |
| ATCGGCGGTCACAGAGGAGA+CGG | 0.593716 | 1.2:-47233859 | MS.gene029697:CDS |
| TCCCGAACCCATTAAAGCAG+AGG | 0.593821 | 1.2:-47227715 | MS.gene029697:CDS |
| ATTGATCGAGCTAGGGTGCG+TGG | 0.595446 | 1.2:-47228311 | MS.gene029697:CDS |
| GCATCATCAGATTCCATGCA+GGG | 0.601778 | 1.2:-47226254 | MS.gene029697:CDS |
| ATATTCTACATGGGTTGGCG+TGG | 0.603561 | 1.2:+47230251 | None:intergenic |
| GTAGGAAAGAAAGAAGGAGA+AGG | 0.603835 | 1.2:-47233964 | MS.gene029697:CDS |
| GATAGTAGTAGTGATAGGGA+TGG | 0.605108 | 1.2:-47233797 | MS.gene029697:CDS |
| TGTTGGCGCAGGTCTATTGG+TGG | 0.605871 | 1.2:-47226491 | MS.gene029697:intron |
| CTTACAATGTCTTCGTATGG+TGG | 0.608002 | 1.2:+47226231 | None:intergenic |
| AGATGCAATTGATCGAGCTA+GGG | 0.609364 | 1.2:-47228318 | MS.gene029697:CDS |
| ACTTACACTATTGAGAAGGA+TGG | 0.610559 | 1.2:-47226294 | MS.gene029697:CDS |
| GTTTCATGGTGATGAAAATG+AGG | 0.610771 | 1.2:-47227643 | MS.gene029697:CDS |
| TGGAGAAGAACCTCCAGCCG+AGG | 0.612324 | 1.2:-47228291 | MS.gene029697:CDS |
| TCATGACAATCCACCTCCAA+AGG | 0.613499 | 1.2:-47226379 | MS.gene029697:CDS |
| GAGACGAATTCAGGAAGCAA+TGG | 0.614187 | 1.2:-47227457 | MS.gene029697:CDS |
| CCTTGGCTTTATATATGCGG+AGG | 0.616946 | 1.2:+47228102 | None:intergenic |
| GTGAAGTAGAAGATGAGGCT+GGG | 0.617278 | 1.2:-47227683 | MS.gene029697:CDS |
| TCCAACTTACACTATTGAGA+AGG | 0.618655 | 1.2:-47226298 | MS.gene029697:CDS |
| ACTCCCAATCACTCACCAGA+AGG | 0.619083 | 1.2:+47228360 | None:intergenic |
| CGCCTTAAGAAACCATCAGA+GGG | 0.619195 | 1.2:-47227931 | MS.gene029697:CDS |
| GTAGGAAGAGAAAGTCCTCA+AGG | 0.620517 | 1.2:-47233775 | MS.gene029697:CDS |
| CCTCCGCATATATAAAGCCA+AGG | 0.624228 | 1.2:-47228102 | MS.gene029697:intron |
| AATGCATTTGGACTTTGACA+GGG | 0.628278 | 1.2:-47230274 | MS.gene029697:CDS |
| GGAGTGGTCACCATAGTGAT+CGG | 0.640226 | 1.2:-47233877 | MS.gene029697:CDS |
| ACTTGAGAAAGCACGACATG+AGG | 0.644679 | 1.2:-47231764 | MS.gene029697:CDS |
| GGAAGCTATTGATCCTGAAG+AGG | 0.658125 | 1.2:-47227622 | MS.gene029697:CDS |
| TGCTCATGTTATGAAATCTG+AGG | 0.658528 | 1.2:-47227890 | MS.gene029697:CDS |
| TTTAAGTGCACATTTGAACG+TGG | 0.660103 | 1.2:-47226090 | MS.gene029697:CDS |
| TACCTCCCAATATTCTACAT+GGG | 0.662886 | 1.2:+47230242 | None:intergenic |
| GAGCCGACATGAATCGGACT+CGG | 0.665866 | 1.2:-47233837 | MS.gene029697:CDS |
| TCATGTTATGAAATCTGAGG+AGG | 0.666704 | 1.2:-47227887 | MS.gene029697:CDS |
| GTGTTCATACTGGATATGAG+TGG | 0.672306 | 1.2:-47226428 | MS.gene029697:CDS |
| TATCCGAGTCCGATTCATGT+CGG | 0.677662 | 1.2:+47233834 | None:intergenic |
| ATAGTGATCGGCGGTCACAG+AGG | 0.679327 | 1.2:-47233865 | MS.gene029697:CDS |
| AACCCATGTAGAATATTGGG+AGG | 0.679555 | 1.2:-47230244 | MS.gene029697:intron |
| ACGCCTTAAGAAACCATCAG+AGG | 0.683028 | 1.2:-47227932 | MS.gene029697:CDS |
| TCTGAAATTAGATTGCGTGA+AGG | 0.695601 | 1.2:-47231375 | MS.gene029697:CDS |
| CACCTCCAAAGGTTGTACAA+GGG | 0.704703 | 1.2:-47226368 | MS.gene029697:CDS |
| GTGGTCACCATAGTGATCGG+CGG | 0.706810 | 1.2:-47233874 | MS.gene029697:CDS |
| ACTCATATCCAGTATGAACA+CGG | 0.712518 | 1.2:+47226430 | None:intergenic |
| ATGATTCCGATAGAATCCGG+AGG | 0.713791 | 1.2:-47233898 | MS.gene029697:CDS |
| GAGGTGCTTGCTGAACAGAG+AGG | 0.735663 | 1.2:-47228272 | MS.gene029697:CDS |
| TCTCTGTTCAGCAAGCACCT+CGG | 0.736566 | 1.2:+47228274 | None:intergenic |
| AGAGTGCCAGAAATTATCTG+CGG | 0.744813 | 1.2:+47226028 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 47226041 | 47233990 | 47226041 | ID=MS.gene029697 |
| chr1.2 | mRNA | 47226041 | 47233990 | 47226041 | ID=MS.gene029697.t1;Parent=MS.gene029697 |
| chr1.2 | exon | 47233721 | 47233990 | 47233721 | ID=MS.gene029697.t1.exon1;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47233721 | 47233990 | 47233721 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47233382 | 47233473 | 47233382 | ID=MS.gene029697.t1.exon2;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47233382 | 47233473 | 47233382 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47232103 | 47232202 | 47232103 | ID=MS.gene029697.t1.exon3;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47232103 | 47232202 | 47232103 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47231756 | 47231827 | 47231756 | ID=MS.gene029697.t1.exon4;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47231756 | 47231827 | 47231756 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47231512 | 47231574 | 47231512 | ID=MS.gene029697.t1.exon5;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47231512 | 47231574 | 47231512 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47231284 | 47231424 | 47231284 | ID=MS.gene029697.t1.exon6;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47231284 | 47231424 | 47231284 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47230245 | 47230340 | 47230245 | ID=MS.gene029697.t1.exon7;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47230245 | 47230340 | 47230245 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47228103 | 47228387 | 47228103 | ID=MS.gene029697.t1.exon8;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47228103 | 47228387 | 47228103 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47227866 | 47228001 | 47227866 | ID=MS.gene029697.t1.exon9;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47227866 | 47228001 | 47227866 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47227608 | 47227762 | 47227608 | ID=MS.gene029697.t1.exon10;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47227608 | 47227762 | 47227608 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47227338 | 47227514 | 47227338 | ID=MS.gene029697.t1.exon11;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47227338 | 47227514 | 47227338 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47226236 | 47226502 | 47226236 | ID=MS.gene029697.t1.exon12;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47226236 | 47226502 | 47226236 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| chr1.2 | exon | 47226041 | 47226160 | 47226041 | ID=MS.gene029697.t1.exon13;Parent=MS.gene029697.t1 |
| chr1.2 | CDS | 47226041 | 47226160 | 47226041 | ID=cds.MS.gene029697.t1;Parent=MS.gene029697.t1 |
| Gene Sequence |
| Protein sequence |
