Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66329.t1 | XP_004495196.1 | 87.8 | 696 | 84 | 1 | 1 | 695 | 1 | 696 | 9.90E-245 | 856.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66329.t1 | Q5K654 | 54.2 | 675 | 298 | 4 | 26 | 695 | 7 | 675 | 2.5e-119 | 431.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66329.t1 | A0A1S2XVN9 | 87.8 | 696 | 84 | 1 | 1 | 695 | 1 | 696 | 7.2e-245 | 856.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene66329 | 0.823638 | 1.24E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene66329 | 0.836788 | 7.62E-57 | -1.69E-46 |
| MS.gene051279 | MS.gene66329 | 0.808262 | 3.38E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene66329 | 0.822828 | 1.92E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene66329 | 0.804841 | 1.78E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene66329 | 0.801346 | 9.40E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene66329 | 0.809608 | 1.74E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene66329 | 0.808248 | 3.40E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene66329 | 0.818582 | 1.82E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66329.t1 | MTR_5g009520 | 96.243 | 692 | 26 | 0 | 1 | 692 | 1 | 692 | 0.0 | 1341 |
| MS.gene66329.t1 | MTR_6g090890 | 94.253 | 696 | 38 | 2 | 1 | 695 | 1 | 695 | 0.0 | 1324 |
| MS.gene66329.t1 | MTR_4g119010 | 65.395 | 367 | 109 | 5 | 329 | 693 | 71 | 421 | 7.74e-157 | 460 |
| MS.gene66329.t1 | MTR_4g119010 | 31.193 | 327 | 195 | 12 | 10 | 318 | 5 | 319 | 1.52e-27 | 116 |
| MS.gene66329.t1 | MTR_4g118885 | 67.614 | 352 | 107 | 4 | 329 | 677 | 82 | 429 | 1.43e-152 | 449 |
| MS.gene66329.t1 | MTR_4g118885 | 30.588 | 340 | 202 | 11 | 6 | 318 | 1 | 333 | 1.26e-27 | 116 |
| MS.gene66329.t1 | MTR_4g011050 | 67.606 | 142 | 22 | 2 | 268 | 409 | 13 | 130 | 4.18e-54 | 183 |
| MS.gene66329.t1 | MTR_2g012310 | 25.617 | 324 | 196 | 11 | 92 | 380 | 436 | 749 | 1.89e-16 | 84.3 |
| MS.gene66329.t1 | MTR_2g012310 | 25.498 | 251 | 176 | 4 | 86 | 325 | 522 | 772 | 1.85e-15 | 80.9 |
| MS.gene66329.t1 | MTR_1g011710 | 25.167 | 449 | 266 | 17 | 94 | 507 | 255 | 668 | 1.15e-13 | 75.1 |
| MS.gene66329.t1 | MTR_1g011710 | 21.461 | 438 | 283 | 14 | 93 | 506 | 482 | 882 | 1.63e-11 | 68.2 |
| MS.gene66329.t1 | MTR_7g068630 | 22.894 | 546 | 322 | 19 | 62 | 545 | 360 | 868 | 1.64e-12 | 71.6 |
| MS.gene66329.t1 | MTR_4g122060 | 23.102 | 303 | 199 | 7 | 90 | 362 | 220 | 518 | 3.45e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66329.t1 | AT5G41770 | 79.202 | 702 | 138 | 1 | 2 | 695 | 3 | 704 | 0.0 | 1134 |
| MS.gene66329.t1 | AT5G45990 | 75.660 | 682 | 156 | 2 | 7 | 687 | 4 | 676 | 0.0 | 1049 |
| MS.gene66329.t1 | AT5G45990 | 76.000 | 675 | 152 | 2 | 14 | 687 | 1 | 666 | 0.0 | 1041 |
| MS.gene66329.t1 | AT3G13210 | 66.667 | 699 | 184 | 4 | 1 | 694 | 1 | 655 | 0.0 | 912 |
| MS.gene66329.t1 | AT3G51110 | 72.818 | 401 | 106 | 3 | 26 | 423 | 5 | 405 | 0.0 | 607 |
| MS.gene66329.t1 | AT3G51110 | 26.705 | 352 | 215 | 12 | 227 | 559 | 73 | 400 | 8.06e-19 | 90.1 |
| MS.gene66329.t1 | AT3G51110 | 27.609 | 297 | 170 | 12 | 385 | 671 | 73 | 334 | 1.55e-18 | 89.0 |
| MS.gene66329.t1 | AT4G03430 | 23.846 | 520 | 313 | 16 | 73 | 547 | 369 | 850 | 1.68e-16 | 84.3 |
| MS.gene66329.t1 | AT4G03430 | 23.846 | 520 | 313 | 16 | 73 | 547 | 369 | 850 | 1.68e-16 | 84.3 |
| MS.gene66329.t1 | AT4G03430 | 23.846 | 520 | 313 | 16 | 73 | 547 | 369 | 850 | 1.68e-16 | 84.3 |
| MS.gene66329.t1 | AT5G28740 | 23.926 | 326 | 203 | 12 | 92 | 382 | 424 | 739 | 5.22e-15 | 79.7 |
| MS.gene66329.t1 | AT5G28740 | 25.100 | 251 | 177 | 5 | 86 | 325 | 510 | 760 | 1.50e-14 | 78.2 |
| MS.gene66329.t1 | AT1G17760 | 24.880 | 209 | 148 | 5 | 113 | 317 | 254 | 457 | 9.64e-12 | 68.9 |
Find 156 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTCTTCTTGAGCTTCT+TGG | 0.162393 | 6.4:-63222428 | None:intergenic |
| GGAAGAGAGTGTCGGGAATA+AGG | 0.273700 | 6.4:+63220568 | MS.gene66329:CDS |
| TACACGTGCACGTTCGGTTT+GGG | 0.286048 | 6.4:+63219842 | MS.gene66329:CDS |
| CAGATGCTTGGCAATGTTGC+GGG | 0.299938 | 6.4:+63220029 | MS.gene66329:CDS |
| CTCAACTTGGAGGCTTCATC+TGG | 0.300668 | 6.4:+63222367 | MS.gene66329:CDS |
| TAGTATGTTACCTTATCTTT+TGG | 0.304639 | 6.4:-63221486 | None:intergenic |
| ACATACTTCTCGCACGAATA+AGG | 0.305041 | 6.4:-63222153 | None:intergenic |
| CTTCTCTTCTTGAGCTTCTT+GGG | 0.305265 | 6.4:-63222427 | None:intergenic |
| ACCGGTGCTCGTCAAATATT+AGG | 0.314781 | 6.4:+63221444 | MS.gene66329:CDS |
| TATGGTTGGGTCTGCAACTT+TGG | 0.325775 | 6.4:-63219532 | None:intergenic |
| TTAATCATGCGCGGAATGTT+TGG | 0.339042 | 6.4:+63219943 | MS.gene66329:CDS |
| AGTTCTCATTTGCAAAGATA+TGG | 0.344500 | 6.4:+63221382 | MS.gene66329:CDS |
| AGATGAGAGTTTAGACTTAT+CGG | 0.353142 | 6.4:+63222108 | MS.gene66329:CDS |
| TCTTTGCAAATGAGAACTTC+TGG | 0.364205 | 6.4:-63221377 | None:intergenic |
| TCAGCTGACGTATTTCAAAC+TGG | 0.364851 | 6.4:-63221416 | None:intergenic |
| CTACTGAAGATGGTTCTTCT+AGG | 0.372624 | 6.4:+63222458 | MS.gene66329:CDS |
| TAATCATGCGCGGAATGTTT+GGG | 0.376804 | 6.4:+63219944 | MS.gene66329:CDS |
| GCTTCTTGGGCAGCTTAGAC+TGG | 0.380324 | 6.4:-63222414 | None:intergenic |
| TTGGTTGTCTGTGTTTCCTC+AGG | 0.381322 | 6.4:-63222627 | None:intergenic |
| AGAAGAAAGGGCAATGCTAT+TGG | 0.393484 | 6.4:+63222336 | MS.gene66329:CDS |
| TTACACGTGCACGTTCGGTT+TGG | 0.393623 | 6.4:+63219841 | MS.gene66329:CDS |
| CAAATATTAGGAAATGCTAT+TGG | 0.393807 | 6.4:+63221456 | MS.gene66329:CDS |
| GTGGTTTGATTATATAAGAT+TGG | 0.396082 | 6.4:+63220547 | MS.gene66329:CDS |
| CAGCTGAGGAGAAGCGATAC+TGG | 0.397271 | 6.4:+63220636 | MS.gene66329:CDS |
| TTGAGAAACAGTATGGTGAT+AGG | 0.405534 | 6.4:+63220441 | MS.gene66329:CDS |
| TTCGGTTTGGGAACGAGCAT+TGG | 0.408066 | 6.4:+63219854 | MS.gene66329:CDS |
| CTCTCCGAGTTCGGTTGAAT+CGG | 0.410153 | 6.4:-63219712 | None:intergenic |
| TTCAGTATGAAGATGAAGTT+AGG | 0.412813 | 6.4:+63220501 | MS.gene66329:CDS |
| GGGCAATGCTATTGGAGAAA+TGG | 0.422085 | 6.4:+63222344 | MS.gene66329:CDS |
| CGCTGTGATTTGAATGGGAG+CGG | 0.423178 | 6.4:-63219622 | None:intergenic |
| GAGTTTAGACTTATCGGAAC+AGG | 0.424789 | 6.4:+63222114 | MS.gene66329:CDS |
| ATTATAAGAATCATACTTTG+TGG | 0.425715 | 6.4:+63219883 | MS.gene66329:CDS |
| AGGCATATCCAGTGCTGGTT+GGG | 0.426749 | 6.4:-63221775 | None:intergenic |
| TGCTCCGCTGTGATTTGAAT+GGG | 0.429726 | 6.4:-63219627 | None:intergenic |
| TCTTCGAAGCTGCTTACAAA+TGG | 0.431091 | 6.4:+63222658 | MS.gene66329:CDS |
| ATACATTGAATTATGATTCG+TGG | 0.432055 | 6.4:+63220528 | MS.gene66329:CDS |
| GGGATTGAGGATGCTATTGT+TGG | 0.433244 | 6.4:+63220467 | MS.gene66329:CDS |
| TGATCGAACAAAGCACTTGA+AGG | 0.433944 | 6.4:+63222048 | MS.gene66329:CDS |
| TCATAAACATTCCTCGCCTT+AGG | 0.442041 | 6.4:-63220245 | None:intergenic |
| CGAGTTTGAGGAAAGGTGTA+AGG | 0.445203 | 6.4:+63220328 | MS.gene66329:CDS |
| AGCTTCGAAGAACTTGAGAT+TGG | 0.446952 | 6.4:-63222646 | None:intergenic |
| AGAACTTCTGGTGAGGCATC+TGG | 0.448293 | 6.4:-63221365 | None:intergenic |
| GCCATTCTTCATCTCAAACT+TGG | 0.450941 | 6.4:-63220216 | None:intergenic |
| TGCAATTGCCCAACCAGCAC+TGG | 0.451994 | 6.4:+63221767 | MS.gene66329:CDS |
| AGAACTTGATGCTGGAGATA+TGG | 0.454445 | 6.4:+63220802 | MS.gene66329:CDS |
| GAGACGATACTCTCCGAGTT+CGG | 0.456056 | 6.4:-63219721 | None:intergenic |
| GTCATCCTAGGGTTGGTGCT+TGG | 0.457607 | 6.4:+63220183 | MS.gene66329:CDS |
| TCAACTTGGAGGCTTCATCT+GGG | 0.458678 | 6.4:+63222368 | MS.gene66329:CDS |
| GAGGCTTCATCTGGGGAGCT+AGG | 0.458747 | 6.4:+63222376 | MS.gene66329:CDS |
| AAATATTGATCTAGCTCGTT+CGG | 0.459057 | 6.4:-63221739 | None:intergenic |
| GATAACCATCCTTGCTGATC+CGG | 0.459943 | 6.4:-63220089 | None:intergenic |
| TGTGGCGTTTGCCGAGTTTG+AGG | 0.461569 | 6.4:+63220316 | MS.gene66329:CDS |
| TGAGGTGGAATGTTAGTGTT+TGG | 0.461636 | 6.4:+63219781 | MS.gene66329:CDS |
| TCCAGATTTAAAAGAAGAAA+GGG | 0.469041 | 6.4:+63222324 | MS.gene66329:CDS |
| AGGAATTCGAGGATTTAATT+CGG | 0.469159 | 6.4:+63219754 | MS.gene66329:CDS |
| TTGCTCCGCTGTGATTTGAA+TGG | 0.469686 | 6.4:-63219628 | None:intergenic |
| CGAGTGAGGTAACCTATGGT+TGG | 0.470693 | 6.4:-63219546 | None:intergenic |
| CTCCAGATTTAAAAGAAGAA+AGG | 0.471933 | 6.4:+63222323 | MS.gene66329:CDS |
| GTGGCATTTGAGAAACAGTA+TGG | 0.475591 | 6.4:+63220434 | MS.gene66329:CDS |
| GGCAGCGCTATATTTATTTG+TGG | 0.475837 | 6.4:+63220657 | MS.gene66329:CDS |
| GGAGAAATGGCTCAACTTGG+AGG | 0.477039 | 6.4:+63222357 | MS.gene66329:CDS |
| GAGTGAGGTAACCTATGGTT+GGG | 0.477737 | 6.4:-63219545 | None:intergenic |
| TGGTGATAGGGAAGGGATTG+AGG | 0.479307 | 6.4:+63220454 | MS.gene66329:CDS |
| CTTATCGGAACAGGAACAAA+AGG | 0.485996 | 6.4:+63222123 | MS.gene66329:CDS |
| TCCTAATATTTGACGAGCAC+CGG | 0.488007 | 6.4:-63221445 | None:intergenic |
| GCCAAGTTTGAGATGAAGAA+TGG | 0.489122 | 6.4:+63220215 | MS.gene66329:CDS |
| CAGTATCGCTTCTCCTCAGC+TGG | 0.490512 | 6.4:-63220635 | None:intergenic |
| AGCAAATTCTTCGTGAAGCT+AGG | 0.492439 | 6.4:+63219646 | MS.gene66329:CDS |
| GCAAATTCTTCGTGAAGCTA+GGG | 0.495777 | 6.4:+63219647 | MS.gene66329:CDS |
| AACAGTATGGTGATAGGGAA+GGG | 0.497023 | 6.4:+63220447 | MS.gene66329:CDS |
| TAAAACTTCCACGTCCAACT+AGG | 0.506995 | 6.4:+63219583 | MS.gene66329:CDS |
| TAAGATTGGAAGAGAGTGTC+GGG | 0.508930 | 6.4:+63220561 | MS.gene66329:CDS |
| GAAGAATGGCGAGGTTCCTA+AGG | 0.514090 | 6.4:+63220229 | MS.gene66329:CDS |
| GAGCAAGATTGCTTTATGAA+AGG | 0.514438 | 6.4:+63222020 | MS.gene66329:CDS |
| AGACAAGTTGCTACTGAAGA+TGG | 0.517146 | 6.4:+63222448 | MS.gene66329:CDS |
| CAGCTGACGTATTTCAAACT+GGG | 0.517928 | 6.4:-63221415 | None:intergenic |
| AAATCCTCAGCCCTTCCCTT+CGG | 0.518902 | 6.4:-63220398 | None:intergenic |
| ATGCTATTGTTGGGAAGAGA+AGG | 0.518921 | 6.4:+63220477 | MS.gene66329:CDS |
| GCTGTGATTTGAATGGGAGC+GGG | 0.519107 | 6.4:-63219621 | None:intergenic |
| CTTTATGAAGAACTTGATGC+TGG | 0.522003 | 6.4:+63220794 | MS.gene66329:CDS |
| GCAGATGCTTGGCAATGTTG+CGG | 0.523391 | 6.4:+63220028 | MS.gene66329:CDS |
| ATTGGAGAAATGGCTCAACT+TGG | 0.524469 | 6.4:+63222354 | MS.gene66329:CDS |
| GGATTTGTATCGGAAGTTTG+TGG | 0.524885 | 6.4:+63220415 | MS.gene66329:CDS |
| AGGATTTAATTCGGCGACTG+AGG | 0.525742 | 6.4:+63219763 | MS.gene66329:CDS |
| TGAGAAACAGTATGGTGATA+GGG | 0.526975 | 6.4:+63220442 | MS.gene66329:CDS |
| TGGTTGTCTGTGTTTCCTCA+GGG | 0.529608 | 6.4:-63222626 | None:intergenic |
| ATCACCGATTCAACCGAACT+CGG | 0.530113 | 6.4:+63219708 | MS.gene66329:CDS |
| GTAAGGAGGCAGAGCGTGCA+AGG | 0.531706 | 6.4:+63220345 | MS.gene66329:CDS |
| TGGAAAGGCTCCAAAAGATA+AGG | 0.531916 | 6.4:+63221476 | MS.gene66329:CDS |
| CCGGAAAAGAAAGGAATTCG+AGG | 0.534313 | 6.4:+63219743 | MS.gene66329:CDS |
| ATTCATACGGAGCAGATGCT+TGG | 0.538905 | 6.4:+63220017 | MS.gene66329:CDS |
| CTGTGATTTGAATGGGAGCG+GGG | 0.540506 | 6.4:-63219620 | None:intergenic |
| AACTCAGGCATATCCAGTGC+TGG | 0.541827 | 6.4:-63221780 | None:intergenic |
| TGCACTTGATCATATTCCGA+AGG | 0.542101 | 6.4:+63220382 | MS.gene66329:CDS |
| CAGGCATATCCAGTGCTGGT+TGG | 0.542904 | 6.4:-63221776 | None:intergenic |
| CTTACACCTTTCCTCAAACT+CGG | 0.543266 | 6.4:-63220327 | None:intergenic |
| AAACAGTATGGTGATAGGGA+AGG | 0.543304 | 6.4:+63220446 | MS.gene66329:CDS |
| GGATTGAGGATGCTATTGTT+GGG | 0.544390 | 6.4:+63220468 | MS.gene66329:CDS |
| AAAACTTCCACGTCCAACTA+GGG | 0.545882 | 6.4:+63219584 | MS.gene66329:CDS |
| TGCCGCGGGTTGATCAGTTG+TGG | 0.550142 | 6.4:+63219985 | MS.gene66329:CDS |
| ATTTAATTCGGCGACTGAGG+TGG | 0.550586 | 6.4:+63219766 | MS.gene66329:CDS |
| GAGATGGATGAAGTGGATGC+CGG | 0.550673 | 6.4:+63220070 | MS.gene66329:CDS |
| GTATCGTCTCCGGAAAAGAA+AGG | 0.555461 | 6.4:+63219734 | MS.gene66329:CDS |
| TCGGGAATAAGGAAAGAACT+AGG | 0.555595 | 6.4:+63220579 | MS.gene66329:CDS |
| AGATGCTTGGCAATGTTGCG+GGG | 0.557175 | 6.4:+63220030 | MS.gene66329:CDS |
| TTGGATTAAGTATGCACAGT+GGG | 0.558600 | 6.4:+63219800 | MS.gene66329:CDS |
| CACCTGAAAATTGCTATGCA+TGG | 0.558764 | 6.4:+63221679 | MS.gene66329:CDS |
| TATTCCGAAGGGAAGGGCTG+AGG | 0.559103 | 6.4:+63220394 | MS.gene66329:CDS |
| CAACTTGGAGGCTTCATCTG+GGG | 0.564192 | 6.4:+63222369 | MS.gene66329:CDS |
| TTCTTAACCCTAGTTGGACG+TGG | 0.565614 | 6.4:-63219591 | None:intergenic |
| GTGGTATAAGTATATTCATA+CGG | 0.566063 | 6.4:+63220004 | MS.gene66329:CDS |
| CGTTTGCCGAGTTTGAGGAA+AGG | 0.569334 | 6.4:+63220321 | MS.gene66329:CDS |
| AAAGTTGCAGACCCAACCAT+AGG | 0.574602 | 6.4:+63219534 | MS.gene66329:CDS |
| TGGATATGCCTGAGTTGTTG+TGG | 0.575928 | 6.4:+63221787 | MS.gene66329:CDS |
| ATTAGGAAATGCTATTGGAA+AGG | 0.577164 | 6.4:+63221461 | MS.gene66329:CDS |
| GAACAAAGCACTTGAAGGCA+TGG | 0.580016 | 6.4:+63222053 | MS.gene66329:CDS |
| AACTCGGAGAGTATCGTCTC+CGG | 0.581315 | 6.4:+63219724 | MS.gene66329:CDS |
| ATACGTCAGCTGAATCTCAC+CGG | 0.583689 | 6.4:+63221426 | MS.gene66329:CDS |
| CGAATCCAAGCACCAACCCT+AGG | 0.585477 | 6.4:-63220188 | None:intergenic |
| GGATGCCGGATCAGCAAGGA+TGG | 0.587348 | 6.4:+63220084 | MS.gene66329:CDS |
| TGCAACTTTGGAAGAAGACA+TGG | 0.591712 | 6.4:-63219520 | None:intergenic |
| ATAAGATTGGAAGAGAGTGT+CGG | 0.599092 | 6.4:+63220560 | MS.gene66329:CDS |
| TGATCATATTCCGAAGGGAA+GGG | 0.601416 | 6.4:+63220388 | MS.gene66329:CDS |
| TTGATCATATTCCGAAGGGA+AGG | 0.603617 | 6.4:+63220387 | MS.gene66329:CDS |
| GCACTTGATCATATTCCGAA+GGG | 0.605207 | 6.4:+63220383 | MS.gene66329:CDS |
| TGTACCTTCCACAACAACTC+AGG | 0.605321 | 6.4:-63221795 | None:intergenic |
| GGAGAAGCTAGTGGATGATG+AGG | 0.609792 | 6.4:+63220277 | MS.gene66329:CDS |
| CAAATTCTTCGTGAAGCTAG+GGG | 0.613562 | 6.4:+63219648 | MS.gene66329:CDS |
| ATGAGATTGAACGAGCGAGA+GGG | 0.614944 | 6.4:+63220138 | MS.gene66329:CDS |
| AGCTAATGTTCCTCCAGCTG+AGG | 0.621589 | 6.4:+63220622 | MS.gene66329:CDS |
| GCAAATGAGAACTTCTGGTG+AGG | 0.623304 | 6.4:-63221372 | None:intergenic |
| CTGGAGCTGATGATCTGAAG+TGG | 0.624411 | 6.4:-63222306 | None:intergenic |
| CGGGAATAAGGAAAGAACTA+GGG | 0.627920 | 6.4:+63220580 | MS.gene66329:CDS |
| GATGCTTGGCAATGTTGCGG+GGG | 0.630328 | 6.4:+63220031 | MS.gene66329:CDS |
| ATAGAGATAGAACTGCAGCT+TGG | 0.631167 | 6.4:+63221609 | MS.gene66329:CDS |
| TATCGCTTCTCCTCAGCTGG+AGG | 0.632169 | 6.4:-63220632 | None:intergenic |
| ATAAGTTTATTAATCATGCG+CGG | 0.634090 | 6.4:+63219934 | MS.gene66329:CDS |
| GAAGGGCTGAGGATTTGTAT+CGG | 0.636551 | 6.4:+63220405 | MS.gene66329:CDS |
| GTTTGAGGAAAGGTGTAAGG+AGG | 0.647717 | 6.4:+63220331 | MS.gene66329:CDS |
| ATGGCGAGGTTCCTAAGGCG+AGG | 0.653917 | 6.4:+63220234 | MS.gene66329:CDS |
| AATGAGATTGAACGAGCGAG+AGG | 0.656303 | 6.4:+63220137 | MS.gene66329:CDS |
| TGTGATTTGAATGGGAGCGG+GGG | 0.657526 | 6.4:-63219619 | None:intergenic |
| GAATGTTTATGAAAGAGCGG+TGG | 0.662932 | 6.4:+63220256 | MS.gene66329:CDS |
| GCGGAATGTTTGGGATCGCG+CGG | 0.662961 | 6.4:+63219953 | MS.gene66329:CDS |
| AAGTGGATGCCGGATCAGCA+AGG | 0.664294 | 6.4:+63220080 | MS.gene66329:CDS |
| ACAGTGGGAAGAGTCGCAGA+AGG | 0.666855 | 6.4:+63219815 | MS.gene66329:CDS |
| GTTTGAGATGAAGAATGGCG+AGG | 0.667240 | 6.4:+63220220 | MS.gene66329:CDS |
| TATGCCTGAGTTGTTGTGGA+AGG | 0.667778 | 6.4:+63221791 | MS.gene66329:CDS |
| TACCACAACTGATCAACCCG+CGG | 0.678557 | 6.4:-63219987 | None:intergenic |
| AAATTCTTCGTGAAGCTAGG+GGG | 0.685980 | 6.4:+63219649 | MS.gene66329:CDS |
| GAGGAATGTTTATGAAAGAG+CGG | 0.689219 | 6.4:+63220253 | MS.gene66329:CDS |
| GAATAAGGAAAGAACTAGGG+AGG | 0.691859 | 6.4:+63220583 | MS.gene66329:CDS |
| AAGAGCGGTGGAGAAGCTAG+TGG | 0.697608 | 6.4:+63220268 | MS.gene66329:CDS |
| CGCTCCCATTCAAATCACAG+CGG | 0.718174 | 6.4:+63219623 | MS.gene66329:CDS |
| CATCGACTATCTATTCCCTG+AGG | 0.740670 | 6.4:+63222611 | MS.gene66329:CDS |
| TTTGGATTAAGTATGCACAG+TGG | 0.776258 | 6.4:+63219799 | MS.gene66329:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTATATGAAAAATATT+TGG | + | chr6.4:63221650-63221669 | MS.gene66329:CDS | 10.0% |
| !!! | AACGATAAATTTAATAATTT+TGG | - | chr6.4:63221288-63221307 | None:intergenic | 10.0% |
| !!! | AATTTTATGCATATTTTTTA+CGG | + | chr6.4:63220935-63220954 | MS.gene66329:intron | 10.0% |
| !! | AAAAAATATGCATAAAATTC+AGG | - | chr6.4:63220934-63220953 | None:intergenic | 15.0% |
| !!! | ATTTTATGCATATTTTTTAC+GGG | + | chr6.4:63220936-63220955 | MS.gene66329:intron | 15.0% |
| !!! | TTTGAATTTTGTTTTGTTAT+CGG | + | chr6.4:63220689-63220708 | MS.gene66329:intron | 15.0% |
| !!! | TTTTTTTTTTTACCTTTTCT+GGG | + | chr6.4:63221097-63221116 | MS.gene66329:intron | 15.0% |
| !!! | TTTTTTTTTTTTACCTTTTC+TGG | + | chr6.4:63221096-63221115 | MS.gene66329:intron | 15.0% |
| !! | ATTATAAGAATCATACTTTG+TGG | + | chr6.4:63219883-63219902 | MS.gene66329:CDS | 20.0% |
| !! | TATATGAAAAATATTTGGAG+TGG | + | chr6.4:63221655-63221674 | MS.gene66329:CDS | 20.0% |
| !! | TCAAATTGTGAATATATAAC+AGG | + | chr6.4:63221958-63221977 | MS.gene66329:intron | 20.0% |
| !!! | CTTTTTATTTTACCCTTATA+TGG | + | chr6.4:63221228-63221247 | MS.gene66329:intron | 20.0% |
| !!! | TTTTATGCATATTTTTTACG+GGG | + | chr6.4:63220937-63220956 | MS.gene66329:intron | 20.0% |
| ! | AGGGTAAAATAAAAAGTCAA+TGG | - | chr6.4:63221224-63221243 | None:intergenic | 25.0% |
| ! | ATAAGTTTATTAATCATGCG+CGG | + | chr6.4:63219934-63219953 | MS.gene66329:CDS | 25.0% |
| ! | ATACATTGAATTATGATTCG+TGG | + | chr6.4:63220528-63220547 | MS.gene66329:CDS | 25.0% |
| ! | ATATTCACAATTTGACAGTT+AGG | - | chr6.4:63221953-63221972 | None:intergenic | 25.0% |
| ! | CAAATATTAGGAAATGCTAT+TGG | + | chr6.4:63221456-63221475 | MS.gene66329:CDS | 25.0% |
| ! | GAGACTTAAAACAAAATACT+TGG | - | chr6.4:63220872-63220891 | None:intergenic | 25.0% |
| ! | GTGGTATAAGTATATTCATA+CGG | + | chr6.4:63220004-63220023 | MS.gene66329:CDS | 25.0% |
| ! | GTGGTTTGATTATATAAGAT+TGG | + | chr6.4:63220547-63220566 | MS.gene66329:CDS | 25.0% |
| ! | TATATCTTAAATACCCATGA+TGG | - | chr6.4:63221135-63221154 | None:intergenic | 25.0% |
| ! | TATCTGTTGACAAAGATAAA+AGG | - | chr6.4:63221577-63221596 | None:intergenic | 25.0% |
| ! | TCCAGATTTAAAAGAAGAAA+GGG | + | chr6.4:63222324-63222343 | MS.gene66329:CDS | 25.0% |
| !! | TAGTATGTTACCTTATCTTT+TGG | - | chr6.4:63221489-63221508 | None:intergenic | 25.0% |
| !!! | ATATGGCTTTGTTTTCAATT+TGG | + | chr6.4:63222532-63222551 | MS.gene66329:intron | 25.0% |
| AATACTTGGAAGTTCACAAA+AGG | - | chr6.4:63220858-63220877 | None:intergenic | 30.0% | |
| AATAGAACTGGACCATATAA+GGG | - | chr6.4:63221243-63221262 | None:intergenic | 30.0% | |
| ACACTACTTTCATTTCCTTA+GGG | + | chr6.4:63221332-63221351 | MS.gene66329:intron | 30.0% | |
| ACTATATTAGAAGCTTCCAT+AGG | - | chr6.4:63221871-63221890 | None:intergenic | 30.0% | |
| AGATGAGAGTTTAGACTTAT+CGG | + | chr6.4:63222108-63222127 | MS.gene66329:CDS | 30.0% | |
| AGGAATTCGAGGATTTAATT+CGG | + | chr6.4:63219754-63219773 | MS.gene66329:CDS | 30.0% | |
| AGGACATAAATGCTATGATT+TGG | - | chr6.4:63221851-63221870 | None:intergenic | 30.0% | |
| AGTTCTCATTTGCAAAGATA+TGG | + | chr6.4:63221382-63221401 | MS.gene66329:CDS | 30.0% | |
| ATCATAGCATTTATGTCCTA+TGG | + | chr6.4:63221852-63221871 | MS.gene66329:intron | 30.0% | |
| ATTAGGAAATGCTATTGGAA+AGG | + | chr6.4:63221461-63221480 | MS.gene66329:CDS | 30.0% | |
| CAAATTGAGAAGAATGAAGT+AGG | - | chr6.4:63222570-63222589 | None:intergenic | 30.0% | |
| CATAAAATTCAGGAAAAGCA+TGG | - | chr6.4:63220924-63220943 | None:intergenic | 30.0% | |
| CTCCAGATTTAAAAGAAGAA+AGG | + | chr6.4:63222323-63222342 | MS.gene66329:CDS | 30.0% | |
| GAGAAAGAGAAATCACATTA+GGG | - | chr6.4:63221903-63221922 | None:intergenic | 30.0% | |
| TTCAGTATGAAGATGAAGTT+AGG | + | chr6.4:63220501-63220520 | MS.gene66329:CDS | 30.0% | |
| ! | AAATATTGATCTAGCTCGTT+CGG | - | chr6.4:63221742-63221761 | None:intergenic | 30.0% |
| ! | AGTGATTTTGCATTTTCTAG+TGG | + | chr6.4:63220730-63220749 | MS.gene66329:intron | 30.0% |
| ! | TTATTTTCTGCGTGTATCTT+AGG | + | chr6.4:63220759-63220778 | MS.gene66329:intron | 30.0% |
| !! | GTTTTAAGTCTCTGTTTTGT+TGG | + | chr6.4:63220880-63220899 | MS.gene66329:intron | 30.0% |
| !! | TTTCCAAGGGTTAGTTTATA+TGG | + | chr6.4:63222515-63222534 | MS.gene66329:intron | 30.0% |
| !!! | ATTTGTTTTGTGTCATCCTA+GGG | + | chr6.4:63220172-63220191 | MS.gene66329:CDS | 30.0% |
| AAGCCATATAAACTAACCCT+TGG | - | chr6.4:63222521-63222540 | None:intergenic | 35.0% | |
| AAGTAGTGTCAATACTCAGT+AGG | - | chr6.4:63221321-63221340 | None:intergenic | 35.0% | |
| CAATAGAACTGGACCATATA+AGG | - | chr6.4:63221244-63221263 | None:intergenic | 35.0% | |
| CTTTATGAAGAACTTGATGC+TGG | + | chr6.4:63220794-63220813 | MS.gene66329:CDS | 35.0% | |
| GACACTACTTTCATTTCCTT+AGG | + | chr6.4:63221331-63221350 | MS.gene66329:intron | 35.0% | |
| GAGCAAGATTGCTTTATGAA+AGG | + | chr6.4:63222020-63222039 | MS.gene66329:CDS | 35.0% | |
| GAGGAATGTTTATGAAAGAG+CGG | + | chr6.4:63220253-63220272 | MS.gene66329:CDS | 35.0% | |
| GGAGAAAGAGAAATCACATT+AGG | - | chr6.4:63221904-63221923 | None:intergenic | 35.0% | |
| TACTCTAGACACTACAATCA+CGG | + | chr6.4:63221174-63221193 | MS.gene66329:intron | 35.0% | |
| TATTAGACTAGCAGATATCC+AGG | - | chr6.4:63220970-63220989 | None:intergenic | 35.0% | |
| TCTCAAACACCTCTATAAAC+AGG | - | chr6.4:63222276-63222295 | None:intergenic | 35.0% | |
| TCTTTGCAAATGAGAACTTC+TGG | - | chr6.4:63221380-63221399 | None:intergenic | 35.0% | |
| TGAGAAACAGTATGGTGATA+GGG | + | chr6.4:63220442-63220461 | MS.gene66329:CDS | 35.0% | |
| TGCATCAAAGATGACAACAA+AGG | - | chr6.4:63221925-63221944 | None:intergenic | 35.0% | |
| TTCACAATTTGACAGTTAGG+TGG | - | chr6.4:63221950-63221969 | None:intergenic | 35.0% | |
| TTGAGAAACAGTATGGTGAT+AGG | + | chr6.4:63220441-63220460 | MS.gene66329:CDS | 35.0% | |
| TTGGATTAAGTATGCACAGT+GGG | + | chr6.4:63219800-63219819 | MS.gene66329:CDS | 35.0% | |
| TTTGGATTAAGTATGCACAG+TGG | + | chr6.4:63219799-63219818 | MS.gene66329:CDS | 35.0% | |
| ! | ATAAGATTGGAAGAGAGTGT+CGG | + | chr6.4:63220560-63220579 | MS.gene66329:CDS | 35.0% |
| ! | CTCATTGTTTGTCTTTTGAG+TGG | + | chr6.4:63222492-63222511 | MS.gene66329:intron | 35.0% |
| ! | GCCCTTTCTTCTTTTAAATC+TGG | - | chr6.4:63222328-63222347 | None:intergenic | 35.0% |
| ! | TGTTTTGTGCCTGTTTATAG+AGG | + | chr6.4:63222264-63222283 | MS.gene66329:intron | 35.0% |
| !! | GTTTTGTTCTTAACCCTAGT+TGG | - | chr6.4:63219600-63219619 | None:intergenic | 35.0% |
| !!! | GATTTGTTTTGTGTCATCCT+AGG | + | chr6.4:63220171-63220190 | MS.gene66329:CDS | 35.0% |
| AAAACTTCCACGTCCAACTA+GGG | + | chr6.4:63219584-63219603 | MS.gene66329:CDS | 40.0% | |
| AAACAGTATGGTGATAGGGA+AGG | + | chr6.4:63220446-63220465 | MS.gene66329:CDS | 40.0% | |
| AAATTCTTCGTGAAGCTAGG+GGG | + | chr6.4:63219649-63219668 | MS.gene66329:CDS | 40.0% | |
| AACAGTATGGTGATAGGGAA+GGG | + | chr6.4:63220447-63220466 | MS.gene66329:CDS | 40.0% | |
| ACATACTTCTCGCACGAATA+AGG | - | chr6.4:63222156-63222175 | None:intergenic | 40.0% | |
| AGAACTTGATGCTGGAGATA+TGG | + | chr6.4:63220802-63220821 | MS.gene66329:CDS | 40.0% | |
| AGAAGAAAGGGCAATGCTAT+TGG | + | chr6.4:63222336-63222355 | MS.gene66329:CDS | 40.0% | |
| AGACAAGTTGCTACTGAAGA+TGG | + | chr6.4:63222448-63222467 | MS.gene66329:CDS | 40.0% | |
| AGAGAAATCACATTAGGGCA+CGG | - | chr6.4:63221898-63221917 | None:intergenic | 40.0% | |
| AGCAAATTCTTCGTGAAGCT+AGG | + | chr6.4:63219646-63219665 | MS.gene66329:CDS | 40.0% | |
| AGCTTCGAAGAACTTGAGAT+TGG | - | chr6.4:63222649-63222668 | None:intergenic | 40.0% | |
| ATAGAGATAGAACTGCAGCT+TGG | + | chr6.4:63221609-63221628 | MS.gene66329:CDS | 40.0% | |
| ATGCTATTGTTGGGAAGAGA+AGG | + | chr6.4:63220477-63220496 | MS.gene66329:CDS | 40.0% | |
| ATTGGAGAAATGGCTCAACT+TGG | + | chr6.4:63222354-63222373 | MS.gene66329:CDS | 40.0% | |
| CAAATTCTTCGTGAAGCTAG+GGG | + | chr6.4:63219648-63219667 | MS.gene66329:CDS | 40.0% | |
| CAATAGAACTCACCCAGAAA+AGG | - | chr6.4:63221112-63221131 | None:intergenic | 40.0% | |
| CACCTGAAAATTGCTATGCA+TGG | + | chr6.4:63221679-63221698 | MS.gene66329:CDS | 40.0% | |
| CAGCTGACGTATTTCAAACT+GGG | - | chr6.4:63221418-63221437 | None:intergenic | 40.0% | |
| CGGGAATAAGGAAAGAACTA+GGG | + | chr6.4:63220580-63220599 | MS.gene66329:CDS | 40.0% | |
| CTACTGAAGATGGTTCTTCT+AGG | + | chr6.4:63222458-63222477 | MS.gene66329:CDS | 40.0% | |
| CTTACACCTTTCCTCAAACT+CGG | - | chr6.4:63220330-63220349 | None:intergenic | 40.0% | |
| CTTATCGGAACAGGAACAAA+AGG | + | chr6.4:63222123-63222142 | MS.gene66329:CDS | 40.0% | |
| CTTCTCTTCTTGAGCTTCTT+GGG | - | chr6.4:63222430-63222449 | None:intergenic | 40.0% | |
| GAATAAGGAAAGAACTAGGG+AGG | + | chr6.4:63220583-63220602 | MS.gene66329:CDS | 40.0% | |
| GAATGTTTATGAAAGAGCGG+TGG | + | chr6.4:63220256-63220275 | MS.gene66329:CDS | 40.0% | |
| GAGTTTAGACTTATCGGAAC+AGG | + | chr6.4:63222114-63222133 | MS.gene66329:CDS | 40.0% | |
| GCAAATTCTTCGTGAAGCTA+GGG | + | chr6.4:63219647-63219666 | MS.gene66329:CDS | 40.0% | |
| GCACTTGATCATATTCCGAA+GGG | + | chr6.4:63220383-63220402 | MS.gene66329:CDS | 40.0% | |
| GCCATTCTTCATCTCAAACT+TGG | - | chr6.4:63220219-63220238 | None:intergenic | 40.0% | |
| GGATTGAGGATGCTATTGTT+GGG | + | chr6.4:63220468-63220487 | MS.gene66329:CDS | 40.0% | |
| GGATTTGTATCGGAAGTTTG+TGG | + | chr6.4:63220415-63220434 | MS.gene66329:CDS | 40.0% | |
| GGCAGCGCTATATTTATTTG+TGG | + | chr6.4:63220657-63220676 | MS.gene66329:CDS | 40.0% | |
| GTAAACGATCGCAATAGAAC+TGG | - | chr6.4:63221255-63221274 | None:intergenic | 40.0% | |
| GTCAACCTCTGAATCAAATG+CGG | - | chr6.4:63221067-63221086 | None:intergenic | 40.0% | |
| GTGAGTTCTATTGCCATCAT+GGG | + | chr6.4:63221119-63221138 | MS.gene66329:intron | 40.0% | |
| GTGGCATTTGAGAAACAGTA+TGG | + | chr6.4:63220434-63220453 | MS.gene66329:CDS | 40.0% | |
| TAAAACTTCCACGTCCAACT+AGG | + | chr6.4:63219583-63219602 | MS.gene66329:CDS | 40.0% | |
| TAATCATGCGCGGAATGTTT+GGG | + | chr6.4:63219944-63219963 | MS.gene66329:CDS | 40.0% | |
| TCAGCTGACGTATTTCAAAC+TGG | - | chr6.4:63221419-63221438 | None:intergenic | 40.0% | |
| TCATAAACATTCCTCGCCTT+AGG | - | chr6.4:63220248-63220267 | None:intergenic | 40.0% | |
| TCCTAATATTTGACGAGCAC+CGG | - | chr6.4:63221448-63221467 | None:intergenic | 40.0% | |
| TCGGGAATAAGGAAAGAACT+AGG | + | chr6.4:63220579-63220598 | MS.gene66329:CDS | 40.0% | |
| TCTTCGAAGCTGCTTACAAA+TGG | + | chr6.4:63222658-63222677 | MS.gene66329:CDS | 40.0% | |
| TCTTCTCTTCTTGAGCTTCT+TGG | - | chr6.4:63222431-63222450 | None:intergenic | 40.0% | |
| TGAGGTGGAATGTTAGTGTT+TGG | + | chr6.4:63219781-63219800 | MS.gene66329:CDS | 40.0% | |
| TGATCATATTCCGAAGGGAA+GGG | + | chr6.4:63220388-63220407 | MS.gene66329:CDS | 40.0% | |
| TGCACTTGATCATATTCCGA+AGG | + | chr6.4:63220382-63220401 | MS.gene66329:CDS | 40.0% | |
| TGCTTACTTTCATTGCTGCA+TGG | + | chr6.4:63221536-63221555 | MS.gene66329:intron | 40.0% | |
| TGGAAAGGCTCCAAAAGATA+AGG | + | chr6.4:63221476-63221495 | MS.gene66329:CDS | 40.0% | |
| TTAATCATGCGCGGAATGTT+TGG | + | chr6.4:63219943-63219962 | MS.gene66329:CDS | 40.0% | |
| TTGATCATATTCCGAAGGGA+AGG | + | chr6.4:63220387-63220406 | MS.gene66329:CDS | 40.0% | |
| ! | CCTCGAATTCCTTTCTTTTC+CGG | - | chr6.4:63219746-63219765 | None:intergenic | 40.0% |
| ! | CTCCATGCATAGCAATTTTC+AGG | - | chr6.4:63221684-63221703 | None:intergenic | 40.0% |
| ! | GAATCGGTGATTTTCTGCTT+TGG | - | chr6.4:63219699-63219718 | None:intergenic | 40.0% |
| ! | GCCAAGTTTGAGATGAAGAA+TGG | + | chr6.4:63220215-63220234 | MS.gene66329:CDS | 40.0% |
| ! | TGATCGAACAAAGCACTTGA+AGG | + | chr6.4:63222048-63222067 | MS.gene66329:CDS | 40.0% |
| !! | GTCTTTTGAGTGGTTTCCAA+GGG | + | chr6.4:63222502-63222521 | MS.gene66329:intron | 40.0% |
| !! | TAAGATTGGAAGAGAGTGTC+GGG | + | chr6.4:63220561-63220580 | MS.gene66329:CDS | 40.0% |
| !! | TGTCTTTTGAGTGGTTTCCA+AGG | + | chr6.4:63222501-63222520 | MS.gene66329:intron | 40.0% |
| !! | TTTTCGAGAGATGGATGAAG+TGG | + | chr6.4:63220063-63220082 | MS.gene66329:CDS | 40.0% |
| !!! | TGATTTTCTGCTTTGGAGGA+CGG | - | chr6.4:63219692-63219711 | None:intergenic | 40.0% |
| !!! | TTTTCGAGTGAGGTAACCTA+TGG | - | chr6.4:63219553-63219572 | None:intergenic | 40.0% |
| AAAGTTGCAGACCCAACCAT+AGG | + | chr6.4:63219534-63219553 | MS.gene66329:CDS | 45.0% | |
| AATGAGATTGAACGAGCGAG+AGG | + | chr6.4:63220137-63220156 | MS.gene66329:CDS | 45.0% | |
| ACCGGTGCTCGTCAAATATT+AGG | + | chr6.4:63221444-63221463 | MS.gene66329:CDS | 45.0% | |
| AGGATTTAATTCGGCGACTG+AGG | + | chr6.4:63219763-63219782 | MS.gene66329:CDS | 45.0% | |
| ATACGTCAGCTGAATCTCAC+CGG | + | chr6.4:63221426-63221445 | MS.gene66329:CDS | 45.0% | |
| ATGAGATTGAACGAGCGAGA+GGG | + | chr6.4:63220138-63220157 | MS.gene66329:CDS | 45.0% | |
| ATTCATACGGAGCAGATGCT+TGG | + | chr6.4:63220017-63220036 | MS.gene66329:CDS | 45.0% | |
| ATTTAATTCGGCGACTGAGG+TGG | + | chr6.4:63219766-63219785 | MS.gene66329:CDS | 45.0% | |
| CCGGAAAAGAAAGGAATTCG+AGG | + | chr6.4:63219743-63219762 | MS.gene66329:CDS | 45.0% | |
| GAAGGGCTGAGGATTTGTAT+CGG | + | chr6.4:63220405-63220424 | MS.gene66329:CDS | 45.0% | |
| GAGTGAGGTAACCTATGGTT+GGG | - | chr6.4:63219548-63219567 | None:intergenic | 45.0% | |
| GATAACCATCCTTGCTGATC+CGG | - | chr6.4:63220092-63220111 | None:intergenic | 45.0% | |
| GCAAATGAGAACTTCTGGTG+AGG | - | chr6.4:63221375-63221394 | None:intergenic | 45.0% | |
| GGGATTGAGGATGCTATTGT+TGG | + | chr6.4:63220467-63220486 | MS.gene66329:CDS | 45.0% | |
| GGGCAATGCTATTGGAGAAA+TGG | + | chr6.4:63222344-63222363 | MS.gene66329:CDS | 45.0% | |
| GGTGAGTTCTATTGCCATCA+TGG | + | chr6.4:63221118-63221137 | MS.gene66329:intron | 45.0% | |
| GTATCGTCTCCGGAAAAGAA+AGG | + | chr6.4:63219734-63219753 | MS.gene66329:CDS | 45.0% | |
| TATGCCTGAGTTGTTGTGGA+AGG | + | chr6.4:63221791-63221810 | MS.gene66329:CDS | 45.0% | |
| TATGGTTGGGTCTGCAACTT+TGG | - | chr6.4:63219535-63219554 | None:intergenic | 45.0% | |
| TCAACTTGGAGGCTTCATCT+GGG | + | chr6.4:63222368-63222387 | MS.gene66329:CDS | 45.0% | |
| TGCTCCGCTGTGATTTGAAT+GGG | - | chr6.4:63219630-63219649 | None:intergenic | 45.0% | |
| TGGATATGCCTGAGTTGTTG+TGG | + | chr6.4:63221787-63221806 | MS.gene66329:CDS | 45.0% | |
| TGGTTGTCTGTGTTTCCTCA+GGG | - | chr6.4:63222629-63222648 | None:intergenic | 45.0% | |
| TGTACCTTCCACAACAACTC+AGG | - | chr6.4:63221798-63221817 | None:intergenic | 45.0% | |
| TTCAGCCGCATTTGATTCAG+AGG | + | chr6.4:63221059-63221078 | MS.gene66329:intron | 45.0% | |
| TTCTTAACCCTAGTTGGACG+TGG | - | chr6.4:63219594-63219613 | None:intergenic | 45.0% | |
| TTGCTCCGCTGTGATTTGAA+TGG | - | chr6.4:63219631-63219650 | None:intergenic | 45.0% | |
| TTGGTTGTCTGTGTTTCCTC+AGG | - | chr6.4:63222630-63222649 | None:intergenic | 45.0% | |
| ! | CATCGACTATCTATTCCCTG+AGG | + | chr6.4:63222611-63222630 | MS.gene66329:CDS | 45.0% |
| ! | CGAGTTTGAGGAAAGGTGTA+AGG | + | chr6.4:63220328-63220347 | MS.gene66329:CDS | 45.0% |
| ! | GAACAAAGCACTTGAAGGCA+TGG | + | chr6.4:63222053-63222072 | MS.gene66329:CDS | 45.0% |
| ! | GGATTTTACACGTGCACGTT+CGG | + | chr6.4:63219836-63219855 | MS.gene66329:CDS | 45.0% |
| ! | GTTTGAGATGAAGAATGGCG+AGG | + | chr6.4:63220220-63220239 | MS.gene66329:CDS | 45.0% |
| ! | GTTTGAGGAAAGGTGTAAGG+AGG | + | chr6.4:63220331-63220350 | MS.gene66329:CDS | 45.0% |
| ! | GTTTTGTGTCATCCTAGGGT+TGG | + | chr6.4:63220176-63220195 | MS.gene66329:CDS | 45.0% |
| ! | TCGGTGATTTTCTGCTTTGG+AGG | - | chr6.4:63219696-63219715 | None:intergenic | 45.0% |
| !! | ATCACCGATTCAACCGAACT+CGG | + | chr6.4:63219708-63219727 | MS.gene66329:CDS | 45.0% |
| !! | TTTTTACGGGGCATCTTTCC+TGG | + | chr6.4:63220949-63220968 | MS.gene66329:intron | 45.0% |
| !!! | CTTCAGTGTCTTTTCGAGTG+AGG | - | chr6.4:63219563-63219582 | None:intergenic | 45.0% |
| AAATCCTCAGCCCTTCCCTT+CGG | - | chr6.4:63220401-63220420 | None:intergenic | 50.0% | |
| AACTCAGGCATATCCAGTGC+TGG | - | chr6.4:63221783-63221802 | None:intergenic | 50.0% | |
| AGATGCTTGGCAATGTTGCG+GGG | + | chr6.4:63220030-63220049 | MS.gene66329:CDS | 50.0% | |
| AGCTAATGTTCCTCCAGCTG+AGG | + | chr6.4:63220622-63220641 | MS.gene66329:CDS | 50.0% | |
| CAACTTGGAGGCTTCATCTG+GGG | + | chr6.4:63222369-63222388 | MS.gene66329:CDS | 50.0% | |
| CAGATGCTTGGCAATGTTGC+GGG | + | chr6.4:63220029-63220048 | MS.gene66329:CDS | 50.0% | |
| CGAGTGAGGTAACCTATGGT+TGG | - | chr6.4:63219549-63219568 | None:intergenic | 50.0% | |
| CGCTCCCATTCAAATCACAG+CGG | + | chr6.4:63219623-63219642 | MS.gene66329:CDS | 50.0% | |
| CGCTGTGATTTGAATGGGAG+CGG | - | chr6.4:63219625-63219644 | None:intergenic | 50.0% | |
| CGTTTGCCGAGTTTGAGGAA+AGG | + | chr6.4:63220321-63220340 | MS.gene66329:CDS | 50.0% | |
| CTCAACTTGGAGGCTTCATC+TGG | + | chr6.4:63222367-63222386 | MS.gene66329:CDS | 50.0% | |
| CTCTCCGAGTTCGGTTGAAT+CGG | - | chr6.4:63219715-63219734 | None:intergenic | 50.0% | |
| CTGGAGCTGATGATCTGAAG+TGG | - | chr6.4:63222309-63222328 | None:intergenic | 50.0% | |
| CTGTGATTTGAATGGGAGCG+GGG | - | chr6.4:63219623-63219642 | None:intergenic | 50.0% | |
| GAAGAATGGCGAGGTTCCTA+AGG | + | chr6.4:63220229-63220248 | MS.gene66329:CDS | 50.0% | |
| GAGACGATACTCTCCGAGTT+CGG | - | chr6.4:63219724-63219743 | None:intergenic | 50.0% | |
| GAGATGGATGAAGTGGATGC+CGG | + | chr6.4:63220070-63220089 | MS.gene66329:CDS | 50.0% | |
| GCAGATGCTTGGCAATGTTG+CGG | + | chr6.4:63220028-63220047 | MS.gene66329:CDS | 50.0% | |
| GCTGTGATTTGAATGGGAGC+GGG | - | chr6.4:63219624-63219643 | None:intergenic | 50.0% | |
| GGAGAAATGGCTCAACTTGG+AGG | + | chr6.4:63222357-63222376 | MS.gene66329:CDS | 50.0% | |
| TACACGTGCACGTTCGGTTT+GGG | + | chr6.4:63219842-63219861 | MS.gene66329:CDS | 50.0% | |
| TACCACAACTGATCAACCCG+CGG | - | chr6.4:63219990-63220009 | None:intergenic | 50.0% | |
| TCTGGTTGAGACACTCCCTA+AGG | - | chr6.4:63221350-63221369 | None:intergenic | 50.0% | |
| TGGTGATAGGGAAGGGATTG+AGG | + | chr6.4:63220454-63220473 | MS.gene66329:CDS | 50.0% | |
| TGTGATTTGAATGGGAGCGG+GGG | - | chr6.4:63219622-63219641 | None:intergenic | 50.0% | |
| TTACACGTGCACGTTCGGTT+TGG | + | chr6.4:63219841-63219860 | MS.gene66329:CDS | 50.0% | |
| ! | AGAACTTCTGGTGAGGCATC+TGG | - | chr6.4:63221368-63221387 | None:intergenic | 50.0% |
| ! | GGAGAAGCTAGTGGATGATG+AGG | + | chr6.4:63220277-63220296 | MS.gene66329:CDS | 50.0% |
| !! | AACTCGGAGAGTATCGTCTC+CGG | + | chr6.4:63219724-63219743 | MS.gene66329:CDS | 50.0% |
| !! | AGGCATATCCAGTGCTGGTT+GGG | - | chr6.4:63221778-63221797 | None:intergenic | 50.0% |
| !! | CAAGGCAGGTTTTCGAGAGA+TGG | + | chr6.4:63220054-63220073 | MS.gene66329:CDS | 50.0% |
| !! | GGAAGAGAGTGTCGGGAATA+AGG | + | chr6.4:63220568-63220587 | MS.gene66329:CDS | 50.0% |
| !! | TTCGGTTTGGGAACGAGCAT+TGG | + | chr6.4:63219854-63219873 | MS.gene66329:CDS | 50.0% |
| !!! | GGAAGCAGAGCTGCTTTTTG+TGG | + | chr6.4:63220298-63220317 | MS.gene66329:CDS | 50.0% |
| AAGAGCGGTGGAGAAGCTAG+TGG | + | chr6.4:63220268-63220287 | MS.gene66329:CDS | 55.0% | |
| AAGTGGATGCCGGATCAGCA+AGG | + | chr6.4:63220080-63220099 | MS.gene66329:CDS | 55.0% | |
| ACAGTGGGAAGAGTCGCAGA+AGG | + | chr6.4:63219815-63219834 | MS.gene66329:CDS | 55.0% | |
| CAGCTGAGGAGAAGCGATAC+TGG | + | chr6.4:63220636-63220655 | MS.gene66329:CDS | 55.0% | |
| CAGTATCGCTTCTCCTCAGC+TGG | - | chr6.4:63220638-63220657 | None:intergenic | 55.0% | |
| CGAATCCAAGCACCAACCCT+AGG | - | chr6.4:63220191-63220210 | None:intergenic | 55.0% | |
| GATGCTTGGCAATGTTGCGG+GGG | + | chr6.4:63220031-63220050 | MS.gene66329:CDS | 55.0% | |
| GCTTCTTGGGCAGCTTAGAC+TGG | - | chr6.4:63222417-63222436 | None:intergenic | 55.0% | |
| TATCGCTTCTCCTCAGCTGG+AGG | - | chr6.4:63220635-63220654 | None:intergenic | 55.0% | |
| TATTCCGAAGGGAAGGGCTG+AGG | + | chr6.4:63220394-63220413 | MS.gene66329:CDS | 55.0% | |
| TGCAATTGCCCAACCAGCAC+TGG | + | chr6.4:63221767-63221786 | MS.gene66329:CDS | 55.0% | |
| TGTGGCGTTTGCCGAGTTTG+AGG | + | chr6.4:63220316-63220335 | MS.gene66329:CDS | 55.0% | |
| !! | CAGGCATATCCAGTGCTGGT+TGG | - | chr6.4:63221779-63221798 | None:intergenic | 55.0% |
| !! | GTCATCCTAGGGTTGGTGCT+TGG | + | chr6.4:63220183-63220202 | MS.gene66329:CDS | 55.0% |
| ATGGCGAGGTTCCTAAGGCG+AGG | + | chr6.4:63220234-63220253 | MS.gene66329:CDS | 60.0% | |
| GAGGCTTCATCTGGGGAGCT+AGG | + | chr6.4:63222376-63222395 | MS.gene66329:CDS | 60.0% | |
| GGATGCCGGATCAGCAAGGA+TGG | + | chr6.4:63220084-63220103 | MS.gene66329:CDS | 60.0% | |
| GTAAGGAGGCAGAGCGTGCA+AGG | + | chr6.4:63220345-63220364 | MS.gene66329:CDS | 60.0% | |
| TTGGCAATGTTGCGGGGGCA+AGG | + | chr6.4:63220036-63220055 | MS.gene66329:CDS | 60.0% | |
| ! | CGCGGTTACTCTTTTGCCGC+GGG | + | chr6.4:63219971-63219990 | MS.gene66329:CDS | 60.0% |
| ! | GCGCGGTTACTCTTTTGCCG+CGG | + | chr6.4:63219970-63219989 | MS.gene66329:CDS | 60.0% |
| ! | GCGGAATGTTTGGGATCGCG+CGG | + | chr6.4:63219953-63219972 | MS.gene66329:CDS | 60.0% |
| !! | TGCCGCGGGTTGATCAGTTG+TGG | + | chr6.4:63219985-63220004 | MS.gene66329:CDS | 60.0% |
| CAATGTTGCGGGGGCAAGGC+AGG | + | chr6.4:63220040-63220059 | MS.gene66329:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 63219522 | 63222713 | 63219522 | ID=MS.gene66329 |
| chr6.4 | mRNA | 63219522 | 63222713 | 63219522 | ID=MS.gene66329.t1;Parent=MS.gene66329 |
| chr6.4 | exon | 63219522 | 63220678 | 63219522 | ID=MS.gene66329.t1.exon1;Parent=MS.gene66329.t1 |
| chr6.4 | CDS | 63219522 | 63220678 | 63219522 | ID=cds.MS.gene66329.t1;Parent=MS.gene66329.t1 |
| chr6.4 | exon | 63220781 | 63220846 | 63220781 | ID=MS.gene66329.t1.exon2;Parent=MS.gene66329.t1 |
| chr6.4 | CDS | 63220781 | 63220846 | 63220781 | ID=cds.MS.gene66329.t1;Parent=MS.gene66329.t1 |
| chr6.4 | exon | 63221353 | 63221497 | 63221353 | ID=MS.gene66329.t1.exon3;Parent=MS.gene66329.t1 |
| chr6.4 | CDS | 63221353 | 63221497 | 63221353 | ID=cds.MS.gene66329.t1;Parent=MS.gene66329.t1 |
| chr6.4 | exon | 63221594 | 63221812 | 63221594 | ID=MS.gene66329.t1.exon4;Parent=MS.gene66329.t1 |
| chr6.4 | CDS | 63221594 | 63221812 | 63221594 | ID=cds.MS.gene66329.t1;Parent=MS.gene66329.t1 |
| chr6.4 | exon | 63221980 | 63222169 | 63221980 | ID=MS.gene66329.t1.exon5;Parent=MS.gene66329.t1 |
| chr6.4 | CDS | 63221980 | 63222169 | 63221980 | ID=cds.MS.gene66329.t1;Parent=MS.gene66329.t1 |
| chr6.4 | exon | 63222284 | 63222479 | 63222284 | ID=MS.gene66329.t1.exon6;Parent=MS.gene66329.t1 |
| chr6.4 | CDS | 63222284 | 63222479 | 63222284 | ID=cds.MS.gene66329.t1;Parent=MS.gene66329.t1 |
| chr6.4 | exon | 63222599 | 63222713 | 63222599 | ID=MS.gene66329.t1.exon7;Parent=MS.gene66329.t1 |
| chr6.4 | CDS | 63222599 | 63222713 | 63222599 | ID=cds.MS.gene66329.t1;Parent=MS.gene66329.t1 |
| Gene Sequence |
| Protein sequence |
