AlfalfaGEDB | MS.gene072740

M. sativa cultivar XinJiangDaYe / MS.gene072740

KEGG: K12869
GO: GO:0003674 GO:0005488 GO:0005515 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360
PFAM: PF02184.19 PF05843.17 PF13428.9 PF13431.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072740.t1	XP_004495196.1	86.9	696	47	2	1	652	1	696	1.00E-222	783.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072740.t1	P17886	54.9	680	249	7	22	652	6	676	1.2e-91	339.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072740.t1	A0A1S2XVN9	86.9	696	47	2	1	652	1	696	7.2e-223	783.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene072740	0.854059	1.58E-61	-1.69E-46
MS.gene049159	MS.gene072740	0.809432	1.90E-50	-1.69E-46
MS.gene049208	MS.gene072740	0.800959	1.13E-48	-1.69E-46
MS.gene049283	MS.gene072740	0.828971	6.68E-55	-1.69E-46
MS.gene049350	MS.gene072740	0.803343	3.65E-49	-1.69E-46
MS.gene049368	MS.gene072740	0.861175	1.23E-63	-1.69E-46
MS.gene049411	MS.gene072740	0.852191	5.43E-61	-1.69E-46
MS.gene049807	MS.gene072740	0.806654	7.40E-50	-1.69E-46
MS.gene049983	MS.gene072740	0.830318	3.14E-55	-1.69E-46
MS.gene050084	MS.gene072740	0.85828	9.18E-63	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene007353	MS.gene072740	PPI
MS.gene019638	MS.gene072740	PPI
MS.gene020771	MS.gene072740	PPI
MS.gene030285	MS.gene072740	PPI
MS.gene037361	MS.gene072740	PPI
MS.gene047123	MS.gene072740	PPI
MS.gene050551	MS.gene072740	PPI
MS.gene06729	MS.gene072740	PPI
MS.gene06946	MS.gene072740	PPI
MS.gene072740	MS.gene05323	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072740.t1	MTR_5g009520	93.353	692	3	1	1	649	1	692	0.0	1279
MS.gene072740.t1	MTR_6g090890	88.075	696	38	3	1	652	1	695	0.0	1217
MS.gene072740.t1	MTR_4g119010	59.280	361	112	8	299	648	83	419	2.11e-127	383
MS.gene072740.t1	MTR_4g119010	31.804	327	193	12	10	318	5	319	8.94e-29	119
MS.gene072740.t1	MTR_4g118885	58.239	352	97	5	329	634	82	429	1.61e-120	365
MS.gene072740.t1	MTR_4g118885	30.383	339	202	11	7	318	2	333	1.02e-28	119
MS.gene072740.t1	MTR_4g011050	59.322	118	29	2	268	366	13	130	1.91e-35	131
MS.gene072740.t1	MTR_2g012310	26.384	307	182	11	92	364	436	732	4.66e-16	82.8
MS.gene072740.t1	MTR_2g012310	25.911	247	172	5	90	325	526	772	6.98e-15	79.0
MS.gene072740.t1	MTR_7g068630	22.907	454	287	16	84	503	445	869	3.34e-12	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072740.t1	AT5G41770	75.641	702	120	2	2	652	3	704	0.0	1057
MS.gene072740.t1	AT5G45990	71.930	684	139	3	7	646	4	678	0.0	974
MS.gene072740.t1	AT5G45990	72.230	677	135	3	14	646	1	668	0.0	966
MS.gene072740.t1	AT3G13210	64.173	695	157	4	1	647	1	651	0.0	844
MS.gene072740.t1	AT3G51110	65.586	401	92	4	26	380	5	405	0.0	527
MS.gene072740.t1	AT3G51110	27.864	323	192	12	324	638	55	344	1.30e-22	101
MS.gene072740.t1	AT3G51110	27.968	379	203	13	160	517	72	401	1.83e-20	94.7
MS.gene072740.t1	AT5G28740	25.649	308	185	12	92	365	424	721	1.56e-15	81.3
MS.gene072740.t1	AT4G03430	23.448	435	291	13	84	504	444	850	5.28e-14	76.3
MS.gene072740.t1	AT4G03430	23.448	435	291	13	84	504	444	850	5.28e-14	76.3

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Find 154 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATATGAAAAGTATT+TGG	0.269243	5.3:-3466802	MS.gene072740:CDS
AAACAGTATGGTGATAGGGA+AGG	0.543304	5.3:-3470039	MS.gene072740:CDS
AAAGATGCAGACCCAACCCT+AGG	0.601930	5.3:-3470951	MS.gene072740:CDS
AAATCCTCAGCCCTCCCCTT+CGG	0.491990	5.3:+3470087	None:intergenic
AAATGGATGCCGGATCAGCA+AGG	0.663884	5.3:-3470405	MS.gene072740:CDS
AACAGTATGGTGATAGGGAA+GGG	0.497023	5.3:-3470038	MS.gene072740:CDS
AACCACGAATCATAATTCAA+CGG	0.642901	5.3:+3469955	None:intergenic
AACGAGATTGAACGAGCGAG+AGG	0.562152	5.3:-3470348	MS.gene072740:CDS
AACTCAGGCATGTCCAATGC+TGG	0.504518	5.3:+3466672	None:intergenic
AACTCGGCGAGTATCGTCTC+CGG	0.581315	5.3:-3470761	MS.gene072740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCACGAATCATAATTCAA+CGG	+	chr5.3:3466674-3466693	None:intergenic	30.0%
AACTAACTAACTACTACTTG+AGG	+	chr5.3:3468120-3468139	None:intergenic	30.0%
AAGTAGTGTCAATACTTAGT+AGG	+	chr5.3:3469495-3469514	None:intergenic	30.0%
ACTAACTAACTACTACTTGA+GGG	+	chr5.3:3468119-3468138	None:intergenic	30.0%
ACTTGATTGTTAGCAATTCT+TGG	-	chr5.3:3467426-3467445	MS.gene072740:intron	30.0%
AGATGTTTCATAGATATGGT+AGG	+	chr5.3:3470094-3470113	None:intergenic	30.0%
AGGTTAAACTAGAAAGTCAA+TGG	+	chr5.3:3469396-3469415	None:intergenic	30.0%
AGTAGTTAGTTAGTTAGGTA+AGG	-	chr5.3:3468125-3468144	MS.gene072740:intron	30.0%
AGTTCTCATTTGCAAAGATA+TGG	-	chr5.3:3469556-3469575	MS.gene072740:intron	30.0%
ATTATCGGAACAAGAACAAA+AGG	-	chr5.3:3470304-3470323	MS.gene072740:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	3465663	3470985	3465663	ID=MS.gene072740
chr5.3	mRNA	3465663	3470985	3465663	ID=MS.gene072740.t1;Parent=MS.gene072740
chr5.3	exon	3469958	3470985	3469958	ID=MS.gene072740.t1.exon1;Parent=MS.gene072740.t1
chr5.3	CDS	3469958	3470985	3469958	ID=cds.MS.gene072740.t1;Parent=MS.gene072740.t1
chr5.3	exon	3469660	3469725	3469660	ID=MS.gene072740.t1.exon2;Parent=MS.gene072740.t1
chr5.3	CDS	3469660	3469725	3469660	ID=cds.MS.gene072740.t1;Parent=MS.gene072740.t1
chr5.3	exon	3466977	3467121	3466977	ID=MS.gene072740.t1.exon3;Parent=MS.gene072740.t1
chr5.3	CDS	3466977	3467121	3466977	ID=cds.MS.gene072740.t1;Parent=MS.gene072740.t1
chr5.3	exon	3466662	3466880	3466662	ID=MS.gene072740.t1.exon4;Parent=MS.gene072740.t1
chr5.3	CDS	3466662	3466880	3466662	ID=cds.MS.gene072740.t1;Parent=MS.gene072740.t1
chr5.3	exon	3466298	3466487	3466298	ID=MS.gene072740.t1.exon5;Parent=MS.gene072740.t1
chr5.3	CDS	3466298	3466487	3466298	ID=cds.MS.gene072740.t1;Parent=MS.gene072740.t1
chr5.3	exon	3465990	3466185	3465990	ID=MS.gene072740.t1.exon6;Parent=MS.gene072740.t1
chr5.3	CDS	3465990	3466185	3465990	ID=cds.MS.gene072740.t1;Parent=MS.gene072740.t1
chr5.3	exon	3465663	3465777	3465663	ID=MS.gene072740.t1.exon7;Parent=MS.gene072740.t1
chr5.3	CDS	3465663	3465777	3465663	ID=cds.MS.gene072740.t1;Parent=MS.gene072740.t1

Gene Sequence

>MS.gene072740

ATGTCTTCTTCCAAAGATGCAGACCCAACCCTAGGTTATCTCACTCGAAAAGACACCGAAGTCAAGCTTCCACGTCCAACTAGGGTTAAGAACAAAACCCCCGCTCCAATTCAAATCACAGCGGAGCAAATTCTTCGTGAAGCTAGGGAGCGTCAAGAAGCTGAGATCCGTCCTCCGAAACAGAAAATCACCGATTCAACCGAACTCGGCGAGTATCGTCTCCGGAAAAGAAAGGAATTCGAGGATTTAATCCGGAGAGTTCGGTGGAATGTCAGTGTTTGGATTAAGTATGCACAGTGGGAAGAGTCGCAGAAGGATTTTACACGTGCGCGTTCGGTTTGGGAACGAGCATTGGAAGTTGATTATAAGAATCATACTCTGTGGTTGAAGTATGCTGAAGTTGAGATGAAGAATAAGTTTATTAATCATGCGAGGAATGTTTGGGATCGTGCGGTTACTCTCTTGCCGCGGGTGGATCAGTTGTGGTATAAGTATATTCATATGGAGGAGATGCTTGGCAATGTCGCTGGGGCGAGGCAGGTTTTCGAGAGATGGATGAAATGGATGCCGGATCAGCAAGGATGGTTATCTTATATAAAATTTGAGCTGAGATATAACGAGATTGAACGAGCGAGAGGGATTTTCGAGAGATTTGTTTTGTGTCATCCTAGGGTTGGTGCTTGGATACGCTATGCGAAGTTTGAGATGAAGAATGGCGAGGTTCCTAAGGCGAGGAATGTTTATGAGAGAGCGGTGGAGAAGCTAGCGGATGATGAGGAAGCAGAGCTGCTTTTTGTGGCGTTTGCGGAGTTTGAGGAAAGGTGTAAGGAGGCAGAGCGTGCTAGGTGTATTTATAAATTTGCACTTGATCATATTCCGAAGGGGAGGGCTGAGGATTTGTACCGGAAGTTTGTGGCATTTGAGAAACAGTATGGTGATAGGGAAGGGATTGAGGATGCTATTGTTGGGAAGAGAAGGTTTCAGTATGAAGATGAAGTGAGGAAAAATCCGTTGAATTATGATTCGTGGTTTGATTATATAAGATTGGAAGAGAGTGTCGGGAATAAGGAAAGAACTAGGGAGGTTTATGAGAGAGCCATAGCTAATGTTCCTCCAGCTGAGGAGAAGCGATACTGGCAGCGCTATATTTATTTGTGGTATGTTTGATTTGAATTCTGTTTTGTTATCTGTTTGTTTATTTATTATTTATTGATTTTGCATTTTCTTGTGGTATTTATTATTTGTCTGTGTATAACTTAGGATTAATTATGCACTCTATGAAGAACTCGATGCTGGAGACATGGAGCGAACAAGAGATGTGTACAAGTAAGCAGCCTTTTGTGAACTTCCAAGCATTTTATTTAAATCTCTGTTTTGTTGGATTTGTAGTACTTTCTGTCCATGCTTTTCCTGCATTGTAAGCATATTTTTTACGGGGTATCTTTCCTGAAAATCTTGCTAGTCTAATAGTATATTGTTCAGTGAAAATCACTGCAAGCTTTTTATACCAATGAGGTTGTGGGTTTTGATTCATTCACGGTTCTTAGGCTGGGATACTGTTTTTAGAGCAGTGGTTTTGTTTTTGCCTCCTCTTTGTTTGATGCAAGAGCTTTATGATCTTTTCTGGGCTAAATGATTTTGCATACAGTAAAATAGCCTCTTTTAGAATGGTTTAATTACGCTCACTTTTAATTTTTATTACATATTAATAATGACTATAGGTACCTGGTTGATGTTAGAGAATATGTGCTACTGTTATTTCAACTTGATTGTTAGCAATTCTTGGCTATTCTGTACAATTTTGTTTTAGTTCAGTTATACTAGTTTTAAATTAGATCTGTGAACTATAATTGATCCAAAGTTGAAGTGCTAGTGATGTACCTTAAGGTCTAGCGTTCTTACAAGCTAGATATCAAAGTTGCAACTGCTTTCTTCATTAAGTGTTTTTTTATTTGTTAAATTTCTCTCAGTTTGTGATTCAGTTGGTCACTGTGATTGCTTTCTTTGATAAGCAATGCTTTTTGAGTTTTGCTGTACTTGTGGACCTATTTTTGTTGTGCTTTTGATATTGGAGTCTTTTATTATGCGATCCCTTTAATCAATCAAATTTAGGAGTGTGTATATAGGTTTAGGAGTGTGGATACTGGAGTGTTCATGTGGAATGAAAGATGTCAAATAGAGTAGGAGACCGGTGTTGGTTTTTTCTATAATTGCTTCTGGTTTTTGCTTGTTGAATGCCGATTGAATTAATAATTCATGCTCGGAGTTGATATGTGCTAAGATGATTTATAATCTGTGCATATTTTCAGAAGAAAAAGATGTGTAGTGGCTAATTTATAGTGTAGATAAAATAGTGGTTTTTTATGTGAGGAATGAAACAGTAAACCAGTGTATATAGTGGTTTTTACTCTAATATATAACACAGTATCTGTTTTTTATTGGTCTTTGATTAACCCTCAAGTAGTAGTTAGTTAGTTAGGTAAGGCTCTCAACAGTGGTGACTCCAAAATTTAAAACCTTGACTTTATGTTTGAATTATGTTTTCCTCTAGTAAAATATTAAGACGAGACCCTATTATTCATTCTCCGATTCCTATTTTTATTTCAACTATTAAGTTAAGATAGATGCTCAACGTGGTAAGATACATTTCTTGTGGGCTTTAGTCATAACTGTTGCGTGATCCATAAAAATAGACCCTATGATTGTTTTCCCAAAAAACATAAGTGGTGGGATTCCATAGTACATTGGTTTTCTTGAATTGATAAATTGGGCTTGGTTTGCATTGGCTGGGAGCATTGGGATTGATTTGAAACTTTATGGTTTTGATGGTACTGGTTTTGAGAATAAGAAGGAATACTGCATATGTTTGAGTATTTTCCTAGATAATGAAATGGTGAAGGTGTTAACAGAATGTCAACATGTTTATCATTCTGAGTGCTTGATATGTGGCTTAGTGCTCATCCTAGTTGCCCTCTCTGTAGAACTTCGCTCCACACATGTTAGTAATAAATTTTCTAAAGAAATCAACATATTACTCCCTCCGTTTCAAAATGAGTGTCACTTTAGCCAAAAAATTTGTTTCAAAATGAATGTCACTTTACATTTCCAATACAACTTTAATTTCTTACTTCCAACTTTACCCTCAATAAATACTCCCAACTTCTCTCTCACACAATTTTCTATACAACTTTAAGTTTGTCTTTTTCTTATAAAGTAAGGGCGGTTTAGTAAAAGTATTATGTCTAATGATTATTTCATTCCATTTCTTAATCTGTTTGCCAAAACCTTAAACGACACTCATTGTGAAACGGGGGGAGTATTAATTTCTGTTGTTCCACTCATGTTAGTAATTAATTTTCTAAAGAAATTAACATATTATTAAGTTTTGTTGACCATCTATCAACAGGTTGATACCAAGTTTTCAAAATAAAAAATCTATCAACAGTTTGATAGATAGAATAGTGGATAGTGCATATTAAGATTAGGAGGAGATTGGAGAGGTTTTAGACTTGGACTAGGTTTTAGACTTGAATGTAAGATATATGTTCCTGTACAACTTCTTTGCTCTTGATTCTTCAGCCACATTTGATTCAGAGATTGACTTGCTGTTTTTTTTTACCTTTCCTGGTTGAGTTCTATTGCCATCACGGGTATTCAAGCTATATGTTTCTGTACTACTTTTTTACTCTAGATTCTACAATCACATTTGACTCTGATTTCTCATCTTTGTCCATTGACTTTCTAGTTTAACCTTTTCTGGTCCAGCTCTATTGCCATCTTTTACTAAATTAACTCGAAAAAATTATTATATTTATCATTGCAGTATTATCCTACTAAGTATTGACACTACTTTCATTTCTTTAGGGAGTGTCTCAACCAGATACCTCACCAGAAGTTCTCATTTGCAAAGATATGGCTTCTAGCAGCCCAGTTTGAAATACGTCAGCTGAATCTCACGGGTGCTCGTCAAATATTAGGGAATGCTATTGGAAAGGCTCCTAAAGATAAGGTAACATACTAATATCTATCTAGATGAAAGTATTATACTGCTTATTTTCATTGCTGCCTAGTTAACTTCACATATGCCTTTTATCTTTGTCAACAGATATTTAAGAAGTATATAGAGATAGAACTGCAGCTTGGTAATATAGATCGATGCAGAAAACTATATGAAAAGTATTTGGAGTGGTCACCTGAAAATTGCTATGCATGGAGCAAGTATGCAGAACTAGAGAGATCTTTAGCTGAGACTGAACGAGCTAGAGCAATATTTGAGCTTGCAATTGCCCAACCAGCATTGGACATGCCTGAGTTGTTGTGGAAGGTACACATAAAATTTATTTATTTATTTATTTACTGTACAAGAGCCAAATATCAGGCTATCACCAAAATAGATGTCAATATCTCAACTCTTACCTCTACTAGTTTCCTACCATATCTATGAAACATCTATGCATGCTGGTCATAACCTAACTGTAAAATTGTTAATATATAACAGGCATACATTGATTTTGAAACTGCCGAGTGTGAATTTGATAGAGCAAGAGCGCTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGCAGAGCTATGCAGAGTTTGAAGCAACAGCTATAGATGAGAGTTTAGAATTATCGGAACAAGAACAAAAGGAGCAGTGCCTTCAGCGTGCGAGAAGTATGTGATCACAGCTTTATGCTCATGCTATAAATCATGATTGTATGTTTTGTTTGAACTGCAACACAATAATTTTCTGATTCTCTTCATATTTTGTTTTGTGCCTGTTTAGAGGTGTTTGAGGATGCTCTAAACCACTTCAGATCATCAGCTCCAGATTTAAAAGAAGAAAGGGCAATGCTATTAGAGAAATGGCTCAACTTGGAGGCTTCATCTGGGGAGCTAGGTGATGTCAGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAGAAGAGAAGACAAGTTTCTACTGAAGATGGTTCTTCTAGGTATGTAACTAACTCATTGTTTGTCTTTGAGTGGTTTCCAAGGGTTAGTTTATATAGCCTTGTTTGCAATTTTGTCACTGCTAGTTTCTGGTATCGTTAGCATTAGGCTTGGCTTGTTGACTATGATATCCTGTGTTAAATTTGTTAATAAAACAATTTATTTTTCTTTTTGTCTTTTTTCCTACTTCATTCTTCTCAATTTGATTTTGCAGAATGGAAGAATTTATCGACTATCTATTCCCCGAGGAAACACATTCAACCAATCTCAAGATCATGGAAGCCGCTTACAAATGGAAGAAGCAAAAATTGTCTAATGCTGATGAATAA

Protein sequence

>MS.gene072740.t1

MSSSKDADPTLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELGEYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFTRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWMPDQQGWLSYIKFELRYNEIERARGIFERFVLCHPRVGAWIRYAKFEMKNGEVPKARNVYERAVEKLADDEEAELLFVAFAEFEERCKEAERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWINYALYEELDAGDMERTRDVYKECLNQIPHQKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLAETERARAIFELAIAQPALDMPELLWKAYIDFETAECEFDRARALYERLLDRTKHLKVWQSYAEFEATAIDESLELSEQEQKEQCLQRARKVFEDALNHFRSSAPDLKEERAMLLEKWLNLEASSGELGDVSLVQSKLPKKLKKRRQVSTEDGSSRMEEFIDYLFPEETHSTNLKIMEAAYKWKKQKLSNADE