Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029814.t1 | XP_003590467.1 | 100 | 341 | 0 | 0 | 1 | 341 | 1 | 341 | 8.40E-197 | 696 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029814.t1 | Q9LZG0 | 83.7 | 338 | 55 | 0 | 4 | 341 | 8 | 345 | 4.9e-169 | 595.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029814.t1 | G7IAA1 | 100.0 | 341 | 0 | 0 | 1 | 341 | 1 | 341 | 6.1e-197 | 696.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029814 | MS.gene052011 | PPI |
| MS.gene029814 | MS.gene98726 | PPI |
| MS.gene85276 | MS.gene029814 | PPI |
| MS.gene029814 | MS.gene46881 | PPI |
| MS.gene032177 | MS.gene029814 | PPI |
| MS.gene029814 | MS.gene003877 | PPI |
| MS.gene029814 | MS.gene28335 | PPI |
| MS.gene029814 | MS.gene056386 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029814.t1 | MTR_1g064060 | 100.000 | 341 | 0 | 0 | 1 | 341 | 1 | 341 | 0.0 | 710 |
| MS.gene029814.t1 | MTR_4g461070 | 96.188 | 341 | 13 | 0 | 1 | 341 | 1 | 341 | 0.0 | 686 |
| MS.gene029814.t1 | MTR_1g064060 | 98.997 | 299 | 3 | 0 | 1 | 299 | 1 | 299 | 0.0 | 615 |
| MS.gene029814.t1 | MTR_3g112040 | 25.382 | 327 | 212 | 14 | 12 | 326 | 27 | 333 | 2.85e-12 | 67.4 |
| MS.gene029814.t1 | MTR_3g081400 | 63.636 | 44 | 13 | 1 | 263 | 306 | 34 | 74 | 2.27e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029814.t1 | AT5G03300 | 83.728 | 338 | 55 | 0 | 4 | 341 | 8 | 345 | 0.0 | 608 |
| MS.gene029814.t1 | AT3G09820 | 82.891 | 339 | 58 | 0 | 3 | 341 | 6 | 344 | 0.0 | 598 |
| MS.gene029814.t1 | AT5G03300 | 84.247 | 292 | 46 | 0 | 50 | 341 | 1 | 292 | 0.0 | 528 |
| MS.gene029814.t1 | AT5G03300 | 84.247 | 292 | 46 | 0 | 50 | 341 | 1 | 292 | 0.0 | 528 |
| MS.gene029814.t1 | AT3G09820 | 84.068 | 295 | 47 | 0 | 47 | 341 | 8 | 302 | 0.0 | 526 |
| MS.gene029814.t1 | AT1G19600 | 25.904 | 332 | 217 | 14 | 14 | 336 | 23 | 334 | 6.87e-13 | 69.3 |
| MS.gene029814.t1 | AT4G27600 | 23.962 | 313 | 209 | 10 | 7 | 308 | 123 | 417 | 1.50e-11 | 65.5 |
Find 92 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAAGCAACCCGAAAAT+TGG | 0.173309 | 1.3:-46125269 | MS.gene029814:CDS |
| ACCAGCTTGTTTAGAGTTCT+TGG | 0.208302 | 1.3:+46125682 | None:intergenic |
| CATTCTGGGATTCAGGTATA+TGG | 0.238438 | 1.3:-46124831 | MS.gene029814:intron |
| GTATCAACTAATTTCTCTTT+AGG | 0.253965 | 1.3:+46124509 | None:intergenic |
| CCTCTGATGCCTTTGGCAAC+TGG | 0.264995 | 1.3:+46124624 | None:intergenic |
| TCTTTAGGTAATAGTATAAC+AGG | 0.271758 | 1.3:+46124524 | None:intergenic |
| GCCAAATATTTCTATATTGC+TGG | 0.282337 | 1.3:-46125133 | MS.gene029814:CDS |
| GCCAGCAATATAGAAATATT+TGG | 0.289493 | 1.3:+46125132 | None:intergenic |
| GCAACTAATTGAATGGATTC+AGG | 0.289892 | 1.3:+46125091 | None:intergenic |
| GATGTACTCCACATTATATT+TGG | 0.305088 | 1.3:+46126019 | None:intergenic |
| TAATGAAAATCAGGCTTCTC+TGG | 0.314330 | 1.3:+46124207 | None:intergenic |
| CAGTGGATGCTTCAAGTTCC+CGG | 0.330838 | 1.3:-46125758 | MS.gene029814:CDS |
| TTGAAGAACTCGCAGATAAA+TGG | 0.334608 | 1.3:+46124942 | None:intergenic |
| TCCATCAATAATAATGGCTT+TGG | 0.352044 | 1.3:-46127140 | None:intergenic |
| TGGAGGATTTCTTTCACAAT+TGG | 0.357365 | 1.3:-46124313 | MS.gene029814:CDS |
| CTCTGATGCCTTTGGCAACT+GGG | 0.358279 | 1.3:+46124625 | None:intergenic |
| TTGCGTGCCTCTGATGCCTT+TGG | 0.366644 | 1.3:+46124617 | None:intergenic |
| GCTCTCACACATTCTTCAAT+AGG | 0.380613 | 1.3:+46124279 | None:intergenic |
| ACTTGTGCTGTTTGTGTGGT+TGG | 0.384223 | 1.3:-46125512 | MS.gene029814:CDS |
| CAAGAATGGCATTGTTCAAC+TGG | 0.389961 | 1.3:+46126919 | None:intergenic |
| TTTGTAGGAGATGCCTTTGT+TGG | 0.393317 | 1.3:-46124333 | MS.gene029814:intron |
| CATAGATTTGTGCTTATCTT+CGG | 0.395196 | 1.3:+46126896 | None:intergenic |
| AGAATCACTTAATGAAAATC+AGG | 0.396079 | 1.3:+46124198 | None:intergenic |
| GGAAGGTGTTCTTCTCGGTA+TGG | 0.399130 | 1.3:-46127119 | MS.gene029814:CDS |
| CAACCCGAAAATTGGGCATT+AGG | 0.401588 | 1.3:-46125261 | MS.gene029814:intron |
| TTTGAAGCAACCCGAAAATT+GGG | 0.412056 | 1.3:-46125268 | MS.gene029814:CDS |
| ATTTATCTGCGAGTTCTTCA+AGG | 0.419149 | 1.3:-46124940 | MS.gene029814:CDS |
| CTGTTTCAGGTACGATGAAA+TGG | 0.420585 | 1.3:-46126045 | MS.gene029814:intron |
| GGTAAGTGCAGCCAGACCTT+TGG | 0.421838 | 1.3:+46124229 | None:intergenic |
| GCTTTGGAAGGTGTTCTTCT+CGG | 0.423155 | 1.3:-46127124 | MS.gene029814:CDS |
| TACCTCCCAGCCATGAACTT+TGG | 0.426161 | 1.3:+46124769 | None:intergenic |
| GTGCTTATCTTCGGCAAGAA+TGG | 0.435280 | 1.3:+46126905 | None:intergenic |
| GAATTCAATCAGGGTTGCTC+AGG | 0.437505 | 1.3:-46125873 | MS.gene029814:intron |
| TGCATCGGAAAAGACAAGTT+TGG | 0.438686 | 1.3:-46125716 | MS.gene029814:CDS |
| GTGCTACTCAGAATTCAATC+AGG | 0.452939 | 1.3:-46125883 | MS.gene029814:CDS |
| GTAGGAGATGCCTTTGTTGG+AGG | 0.455368 | 1.3:-46124330 | MS.gene029814:intron |
| ACCAATGTAACTAGTGGCCC+CGG | 0.467806 | 1.3:+46125739 | None:intergenic |
| AGTGGATGCTTCAAGTTCCC+GGG | 0.474413 | 1.3:-46125757 | MS.gene029814:CDS |
| GTTATTTGCTGCGGCATGCT+CGG | 0.475346 | 1.3:+46125069 | None:intergenic |
| AAGGGCAATACCTGCTCCAT+TGG | 0.476251 | 1.3:+46124487 | None:intergenic |
| GCAATTTGCAGCTGATAAGT+TGG | 0.489440 | 1.3:+46125305 | None:intergenic |
| TTTGTGTGGTTGGTGGTGAA+AGG | 0.492976 | 1.3:-46125502 | MS.gene029814:intron |
| CAACTAATTGAATGGATTCA+GGG | 0.497187 | 1.3:+46125092 | None:intergenic |
| GAAGGTGTTCTTCTCGGTAT+GGG | 0.502474 | 1.3:-46127118 | MS.gene029814:CDS |
| CCCGTATGTGTTGCTCAAGA+TGG | 0.505635 | 1.3:-46124563 | MS.gene029814:CDS |
| AATGTTATCATCCAAAGGTC+TGG | 0.508644 | 1.3:-46124240 | MS.gene029814:CDS |
| TGGATTCAGGGGATACAGTA+AGG | 0.509166 | 1.3:+46125104 | None:intergenic |
| AGGCATCAGAGGCACGCAAA+AGG | 0.511205 | 1.3:-46124613 | MS.gene029814:CDS |
| CCCGGGGCCACTAGTTACAT+TGG | 0.515125 | 1.3:-46125740 | MS.gene029814:CDS |
| CCCATCTTGAGCAACACATA+CGG | 0.516893 | 1.3:+46124562 | None:intergenic |
| TGTGCTGTTTGTGTGGTTGG+TGG | 0.518619 | 1.3:-46125509 | MS.gene029814:CDS |
| CCGTATGTGTTGCTCAAGAT+GGG | 0.523351 | 1.3:-46124562 | MS.gene029814:CDS |
| TACGGCAGAGCTTTCTCCTG+TGG | 0.523507 | 1.3:+46124915 | None:intergenic |
| TATAATGTGGAGTACATCGC+TGG | 0.524618 | 1.3:-46126014 | MS.gene029814:CDS |
| AATGAAAATCAGGCTTCTCT+GGG | 0.526760 | 1.3:+46124208 | None:intergenic |
| GAGAAATTAGTTGATACCAA+TGG | 0.529177 | 1.3:-46124503 | MS.gene029814:CDS |
| CGCAGATAAATGGTGCAGAA+AGG | 0.536901 | 1.3:+46124952 | None:intergenic |
| CGAGTTCTTCAAGGATCCAC+AGG | 0.539544 | 1.3:-46124931 | MS.gene029814:CDS |
| ATTGAAGAATGTGTGAGAGC+TGG | 0.541729 | 1.3:-46124276 | MS.gene029814:CDS |
| TTAGTTGATACCAATGGAGC+AGG | 0.545602 | 1.3:-46124497 | MS.gene029814:intron |
| GAAGATGAGAATACACCTAC+AGG | 0.551303 | 1.3:-46125536 | MS.gene029814:CDS |
| ATGCTCGGCAACTAATTGAA+TGG | 0.551334 | 1.3:+46125084 | None:intergenic |
| GACAGCAGAGATGTCGAGAA+GGG | 0.552559 | 1.3:+46127090 | None:intergenic |
| CCATCTTGAGCAACACATAC+GGG | 0.552682 | 1.3:+46124563 | None:intergenic |
| AGGAACTTGTGCTGTTTGTG+TGG | 0.555282 | 1.3:-46125516 | MS.gene029814:CDS |
| CGACAGCAGAGATGTCGAGA+AGG | 0.569277 | 1.3:+46127089 | None:intergenic |
| ACTAGTTACATTGGTTGCAT+CGG | 0.569490 | 1.3:-46125731 | MS.gene029814:CDS |
| TTGAAGAATGTGTGAGAGCT+GGG | 0.569874 | 1.3:-46124275 | MS.gene029814:CDS |
| ACCAAGAACTCTAAACAAGC+TGG | 0.574572 | 1.3:-46125683 | MS.gene029814:CDS |
| CCAGTTGCCAAAGGCATCAG+AGG | 0.578685 | 1.3:-46124624 | MS.gene029814:CDS |
| TCTAACCTTGTTATTTGCTG+CGG | 0.578850 | 1.3:+46125060 | None:intergenic |
| TGAAAGAAATCCTCCAACAA+AGG | 0.578951 | 1.3:+46124320 | None:intergenic |
| ATCAGCTGCAAATTGCTACA+AGG | 0.584960 | 1.3:-46125298 | MS.gene029814:CDS |
| AAAGATATCCCAGTTGCCAA+AGG | 0.593183 | 1.3:-46124633 | MS.gene029814:CDS |
| TCAATAATAATGGCTTTGGA+AGG | 0.597485 | 1.3:-46127136 | None:intergenic |
| CAGCAAATGTTATCATCCAA+AGG | 0.601761 | 1.3:-46124245 | MS.gene029814:CDS |
| AACTAATTGAATGGATTCAG+GGG | 0.625445 | 1.3:+46125093 | None:intergenic |
| TGCTACTCAGAATTCAATCA+GGG | 0.630239 | 1.3:-46125882 | MS.gene029814:CDS |
| AAGGATTACTGTTATCACAC+AGG | 0.637867 | 1.3:-46124594 | MS.gene029814:CDS |
| ACAGCAGAGATGTCGAGAAG+GGG | 0.640848 | 1.3:+46127091 | None:intergenic |
| CTTTAGGTAATAGTATAACA+GGG | 0.644006 | 1.3:+46124525 | None:intergenic |
| TTCCAAAGTTCATGGCTGGG+AGG | 0.650106 | 1.3:-46124771 | MS.gene029814:intron |
| CGGAAAAGACAAGTTTGGTG+AGG | 0.651267 | 1.3:-46125711 | MS.gene029814:CDS |
| GATGCAACCAATGTAACTAG+TGG | 0.655384 | 1.3:+46125733 | None:intergenic |
| CCAATGTAACTAGTGGCCCC+GGG | 0.655549 | 1.3:+46125740 | None:intergenic |
| CAAACAGCACAAGTTCCTGT+AGG | 0.659898 | 1.3:+46125521 | None:intergenic |
| GCATGCCGCAGCAAATAACA+AGG | 0.662561 | 1.3:-46125065 | MS.gene029814:intron |
| AGGATTACTGTTATCACACA+GGG | 0.665946 | 1.3:-46124593 | MS.gene029814:CDS |
| GTGGATGCTTCAAGTTCCCG+GGG | 0.678166 | 1.3:-46125756 | MS.gene029814:CDS |
| TGACCAGACTGAAAATGTCG+AGG | 0.681552 | 1.3:-46124666 | MS.gene029814:intron |
| AATGTGGAGTACATCGCTGG+AGG | 0.683186 | 1.3:-46126011 | MS.gene029814:intron |
| AATGGCTGCCAAATATAATG+TGG | 0.689459 | 1.3:-46126027 | MS.gene029814:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTTCAAAATTTTAT+CGG | - | chr1.3:46124928-46124947 | MS.gene029814:CDS | 10.0% |
| !! | TTATTTGAATTTAACAGTTT+AGG | + | chr1.3:46126449-46126468 | None:intergenic | 15.0% |
| !!! | AATTTTAAAACTGAATTCAA+CGG | + | chr1.3:46125742-46125761 | None:intergenic | 15.0% |
| !!! | GTAATTTCTTTTATATTAGT+TGG | - | chr1.3:46125495-46125514 | MS.gene029814:intron | 15.0% |
| !!! | TATTTTTATCTCCATTAAAT+GGG | - | chr1.3:46126119-46126138 | MS.gene029814:intron | 15.0% |
| !!! | TTTATGATTTTTCTTTTTTC+AGG | - | chr1.3:46125428-46125447 | MS.gene029814:intron | 15.0% |
| !!! | TTTTTAATAAATAGTTGAGA+AGG | - | chr1.3:46126178-46126197 | MS.gene029814:intron | 15.0% |
| !!! | TTTTTTCTTATTGATCTTTA+AGG | - | chr1.3:46126474-46126493 | MS.gene029814:intron | 15.0% |
| !! | ACAATTAGATGCAATAAAAA+AGG | + | chr1.3:46125995-46126014 | None:intergenic | 20.0% |
| !! | ACTAAATTCATTTAACAACT+AGG | - | chr1.3:46125763-46125782 | MS.gene029814:intron | 20.0% |
| !! | ATCACATCAAATCTTTAATT+AGG | + | chr1.3:46125125-46125144 | None:intergenic | 20.0% |
| !! | ATTTGATGTGATGTAATAAT+TGG | - | chr1.3:46125133-46125152 | MS.gene029814:CDS | 20.0% |
| !! | GAGACATAGATTAATATATA+CGG | - | chr1.3:46124686-46124705 | MS.gene029814:intron | 20.0% |
| !! | TTAACGTTTGTTTAAGTATT+TGG | - | chr1.3:46124730-46124749 | MS.gene029814:intron | 20.0% |
| !! | TTTATAGATTATTGTGTTTC+CGG | - | chr1.3:46125378-46125397 | MS.gene029814:intron | 20.0% |
| !!! | AAGATAATAAAATTTTGCAC+TGG | - | chr1.3:46125907-46125926 | MS.gene029814:intron | 20.0% |
| !!! | AGATTTTTAGCTGTTTTTAT+CGG | - | chr1.3:46125189-46125208 | MS.gene029814:intron | 20.0% |
| !!! | CTATTTTTATCTCCATTAAA+TGG | - | chr1.3:46126118-46126137 | MS.gene029814:intron | 20.0% |
| !!! | GTGTTGATTTGAATAATAAA+AGG | - | chr1.3:46124335-46124354 | MS.gene029814:intron | 20.0% |
| !!! | TCTTTCTTTTTTGTTTTTTG+CGG | - | chr1.3:46124313-46124332 | MS.gene029814:CDS | 20.0% |
| !!! | TGAGTTTAACTTATTTAGTT+TGG | - | chr1.3:46125068-46125087 | MS.gene029814:CDS | 20.0% |
| !!! | TTCTTATTCGAAGTATTAAA+GGG | - | chr1.3:46125882-46125901 | MS.gene029814:CDS | 20.0% |
| !!! | TTCTTTTCTTCTATTTTTGT+AGG | - | chr1.3:46126985-46127004 | MS.gene029814:intron | 20.0% |
| !!! | TTTCTTATTCGAAGTATTAA+AGG | - | chr1.3:46125881-46125900 | MS.gene029814:CDS | 20.0% |
| !!! | TTTGTTGTTGAATAATGTTT+TGG | - | chr1.3:46124538-46124557 | MS.gene029814:CDS | 20.0% |
| !!! | TTTTTATTGCATCTAATTGT+AGG | - | chr1.3:46125995-46126014 | MS.gene029814:intron | 20.0% |
| ! | AACAGAGATCAAAACAAATA+AGG | + | chr1.3:46124823-46124842 | None:intergenic | 25.0% |
| ! | AATGATAAATTGACCTTGAA+TGG | + | chr1.3:46126942-46126961 | None:intergenic | 25.0% |
| ! | AATTAACTACAAAAAGCAGA+AGG | + | chr1.3:46126868-46126887 | None:intergenic | 25.0% |
| ! | ATCAAATACTTCTAGTAGAA+AGG | + | chr1.3:46126320-46126339 | None:intergenic | 25.0% |
| ! | ATGATAAATTGACCTTGAAT+GGG | + | chr1.3:46126941-46126960 | None:intergenic | 25.0% |
| ! | ATTAACTACAAAAAGCAGAA+GGG | + | chr1.3:46126867-46126886 | None:intergenic | 25.0% |
| ! | CACAACTACAAATATAACTT+TGG | + | chr1.3:46126896-46126915 | None:intergenic | 25.0% |
| ! | CTTTAGGTAATAGTATAACA+GGG | + | chr1.3:46126811-46126830 | None:intergenic | 25.0% |
| ! | GTATCAACTAATTTCTCTTT+AGG | + | chr1.3:46126827-46126846 | None:intergenic | 25.0% |
| ! | TAGATTAATATATACGGTGT+TGG | - | chr1.3:46124692-46124711 | MS.gene029814:intron | 25.0% |
| ! | TATACAACAAGATTGAAAGT+AGG | - | chr1.3:46124662-46124681 | MS.gene029814:CDS | 25.0% |
| ! | TCAAATACTTCTAGTAGAAA+GGG | + | chr1.3:46126319-46126338 | None:intergenic | 25.0% |
| ! | TCTTTAGGTAATAGTATAAC+AGG | + | chr1.3:46126812-46126831 | None:intergenic | 25.0% |
| ! | TTATAGATTATTGTGTTTCC+GGG | - | chr1.3:46125379-46125398 | MS.gene029814:intron | 25.0% |
| ! | TTCGAATAAGAAAAAATGCA+AGG | + | chr1.3:46125874-46125893 | None:intergenic | 25.0% |
| ! | TTTCATTTAGTAACTCATCT+TGG | - | chr1.3:46126632-46126651 | MS.gene029814:intron | 25.0% |
| !! | TCTCATTTCAGATTCATTTT+CGG | - | chr1.3:46124489-46124508 | MS.gene029814:intron | 25.0% |
| !! | TTAACAGTTTAGGATTCTTA+CGG | + | chr1.3:46126439-46126458 | None:intergenic | 25.0% |
| !!! | TGGTTTTCAATTTGATTTAC+AGG | - | chr1.3:46124383-46124402 | MS.gene029814:intron | 25.0% |
| AATGTAAAAGCAAAACTGCA+AGG | + | chr1.3:46126614-46126633 | None:intergenic | 30.0% | |
| ATGTAAAAGCAAAACTGCAA+GGG | + | chr1.3:46126613-46126632 | None:intergenic | 30.0% | |
| CATAGATTTGTGCTTATCTT+CGG | + | chr1.3:46124440-46124459 | None:intergenic | 30.0% | |
| GATGTACTCCACATTATATT+TGG | + | chr1.3:46125317-46125336 | None:intergenic | 30.0% | |
| GATGTGATGTAATAATTGGT+TGG | - | chr1.3:46125137-46125156 | MS.gene029814:CDS | 30.0% | |
| GCCAGCAATATAGAAATATT+TGG | + | chr1.3:46126204-46126223 | None:intergenic | 30.0% | |
| GGAAAAAAAAATCCCATTCA+AGG | - | chr1.3:46126926-46126945 | MS.gene029814:CDS | 30.0% | |
| TAAAACTGAATTCAACGGTT+CGG | + | chr1.3:46125737-46125756 | None:intergenic | 30.0% | |
| TCATCAAGATGACTAACATT+TGG | - | chr1.3:46126144-46126163 | MS.gene029814:intron | 30.0% | |
| ! | AACTAATTGAATGGATTCAG+GGG | + | chr1.3:46126243-46126262 | None:intergenic | 30.0% |
| ! | AGAACATTTTCCAAAGTTCA+TGG | - | chr1.3:46126554-46126573 | MS.gene029814:intron | 30.0% |
| ! | ATCTTTAAGGATTTGCATTC+TGG | - | chr1.3:46126487-46126506 | MS.gene029814:intron | 30.0% |
| ! | CAACTAATTGAATGGATTCA+GGG | + | chr1.3:46126244-46126263 | None:intergenic | 30.0% |
| ! | GAGAAATTAGTTGATACCAA+TGG | - | chr1.3:46126830-46126849 | MS.gene029814:intron | 30.0% |
| ! | GCCAAATATTTCTATATTGC+TGG | - | chr1.3:46126200-46126219 | MS.gene029814:intron | 30.0% |
| ! | TCTTGATGATTCCCATTTAA+TGG | + | chr1.3:46126133-46126152 | None:intergenic | 30.0% |
| ! | TCTTTAAGGATTTGCATTCT+GGG | - | chr1.3:46126488-46126507 | MS.gene029814:intron | 30.0% |
| !! | AAAAATGTTACTTTCCTTCC+CGG | + | chr1.3:46125400-46125419 | None:intergenic | 30.0% |
| !! | AGGTATATGGACTATGTTTT+TGG | - | chr1.3:46126515-46126534 | MS.gene029814:intron | 30.0% |
| !! | TTTGATTTTGCTTCTTACAG+TGG | - | chr1.3:46125558-46125577 | MS.gene029814:intron | 30.0% |
| AAGGATTACTGTTATCACAC+AGG | - | chr1.3:46126739-46126758 | MS.gene029814:intron | 35.0% | |
| AATGAAAATCAGGCTTCTCT+GGG | + | chr1.3:46127128-46127147 | None:intergenic | 35.0% | |
| AATGGCTGCCAAATATAATG+TGG | - | chr1.3:46125306-46125325 | MS.gene029814:CDS | 35.0% | |
| AATGTTATCATCCAAAGGTC+TGG | - | chr1.3:46127093-46127112 | MS.gene029814:CDS | 35.0% | |
| AGGATTACTGTTATCACACA+GGG | - | chr1.3:46126740-46126759 | MS.gene029814:intron | 35.0% | |
| ATACTTCTAGTAGAAAGGGA+AGG | + | chr1.3:46126315-46126334 | None:intergenic | 35.0% | |
| ATTTATCTGCGAGTTCTTCA+AGG | - | chr1.3:46126393-46126412 | MS.gene029814:intron | 35.0% | |
| CAGCAAATGTTATCATCCAA+AGG | - | chr1.3:46127088-46127107 | MS.gene029814:CDS | 35.0% | |
| TAATGAAAATCAGGCTTCTC+TGG | + | chr1.3:46127129-46127148 | None:intergenic | 35.0% | |
| TGAAAGAAATCCTCCAACAA+AGG | + | chr1.3:46127016-46127035 | None:intergenic | 35.0% | |
| TGAATCAGATCTCATGTTTC+TGG | - | chr1.3:46124363-46124382 | MS.gene029814:intron | 35.0% | |
| TGCTACTCAGAATTCAATCA+GGG | - | chr1.3:46125451-46125470 | MS.gene029814:intron | 35.0% | |
| TGGAGGATTTCTTTCACAAT+TGG | - | chr1.3:46127020-46127039 | MS.gene029814:intron | 35.0% | |
| TTCAACGTAATCACAAGTGT+TGG | + | chr1.3:46124904-46124923 | None:intergenic | 35.0% | |
| TTGAAGAACTCGCAGATAAA+TGG | + | chr1.3:46126394-46126413 | None:intergenic | 35.0% | |
| TTGTAGTTGTGCTTATGAGT+AGG | - | chr1.3:46126905-46126924 | MS.gene029814:CDS | 35.0% | |
| ! | ACACCTTCGATCAAAAGTAT+TGG | + | chr1.3:46124849-46124868 | None:intergenic | 35.0% |
| ! | ACTAGTTACATTGGTTGCAT+CGG | - | chr1.3:46125602-46125621 | MS.gene029814:intron | 35.0% |
| ! | ATTTGAAGCAACCCGAAAAT+TGG | - | chr1.3:46126064-46126083 | MS.gene029814:intron | 35.0% |
| ! | ATTTTCCAAAGTTCATGGCT+GGG | - | chr1.3:46126559-46126578 | MS.gene029814:intron | 35.0% |
| ! | CTTGTGCTAGAATGCTATTT+AGG | - | chr1.3:46124776-46124795 | MS.gene029814:CDS | 35.0% |
| ! | GCAACTAATTGAATGGATTC+AGG | + | chr1.3:46126245-46126264 | None:intergenic | 35.0% |
| ! | TGTTTGAGTCTTTGAGAGTT+TGG | - | chr1.3:46125092-46125111 | MS.gene029814:CDS | 35.0% |
| ! | TTTGAAGCAACCCGAAAATT+GGG | - | chr1.3:46126065-46126084 | MS.gene029814:intron | 35.0% |
| ! | TTTTCCATCTCTCAGTTTTC+TGG | - | chr1.3:46125164-46125183 | MS.gene029814:intron | 35.0% |
| !! | TCTAACCTTGTTATTTGCTG+CGG | + | chr1.3:46126276-46126295 | None:intergenic | 35.0% |
| !!! | AATTTTCGGGTTGCTTCAAA+TGG | + | chr1.3:46126065-46126084 | None:intergenic | 35.0% |
| AAAGATATCCCAGTTGCCAA+AGG | - | chr1.3:46126700-46126719 | MS.gene029814:intron | 40.0% | |
| ACCAAGAACTCTAAACAAGC+TGG | - | chr1.3:46125650-46125669 | MS.gene029814:intron | 40.0% | |
| AGATGCTGAACAGATCAACA+AGG | + | chr1.3:46126100-46126119 | None:intergenic | 40.0% | |
| AGATTATTGTGTTTCCGGGA+AGG | - | chr1.3:46125383-46125402 | MS.gene029814:intron | 40.0% | |
| AGTATCTTACTCCCTTGTGA+AGG | - | chr1.3:46126345-46126364 | MS.gene029814:intron | 40.0% | |
| ATCAGCTGCAAATTGCTACA+AGG | - | chr1.3:46126035-46126054 | MS.gene029814:CDS | 40.0% | |
| ATGCTCGGCAACTAATTGAA+TGG | + | chr1.3:46126252-46126271 | None:intergenic | 40.0% | |
| ATTGAAGAATGTGTGAGAGC+TGG | - | chr1.3:46127057-46127076 | MS.gene029814:intron | 40.0% | |
| CAAGAATGGCATTGTTCAAC+TGG | + | chr1.3:46124417-46124436 | None:intergenic | 40.0% | |
| CAGACAACCAAAATGAAGCA+CGG | + | chr1.3:46124986-46125005 | None:intergenic | 40.0% | |
| CATCATGAAGACCTTCACAA+GGG | + | chr1.3:46126359-46126378 | None:intergenic | 40.0% | |
| CTTTCCAGAAAACTGAGAGA+TGG | + | chr1.3:46125171-46125190 | None:intergenic | 40.0% | |
| GAAGATGAGAATACACCTAC+AGG | - | chr1.3:46125797-46125816 | MS.gene029814:intron | 40.0% | |
| GATGCAACCAATGTAACTAG+TGG | + | chr1.3:46125603-46125622 | None:intergenic | 40.0% | |
| GCAATTTGCAGCTGATAAGT+TGG | + | chr1.3:46126031-46126050 | None:intergenic | 40.0% | |
| GCTCTCACACATTCTTCAAT+AGG | + | chr1.3:46127057-46127076 | None:intergenic | 40.0% | |
| TATAATGTGGAGTACATCGC+TGG | - | chr1.3:46125319-46125338 | MS.gene029814:CDS | 40.0% | |
| TATGATCCTACGACTGTTTC+AGG | - | chr1.3:46125275-46125294 | MS.gene029814:CDS | 40.0% | |
| TCATCATGAAGACCTTCACA+AGG | + | chr1.3:46126360-46126379 | None:intergenic | 40.0% | |
| TGCATCGGAAAAGACAAGTT+TGG | - | chr1.3:46125617-46125636 | MS.gene029814:intron | 40.0% | |
| TTGAAGAATGTGTGAGAGCT+GGG | - | chr1.3:46127058-46127077 | MS.gene029814:intron | 40.0% | |
| TTTGTAGGAGATGCCTTTGT+TGG | - | chr1.3:46127000-46127019 | MS.gene029814:intron | 40.0% | |
| ! | ACATTTTCAGTCTGGTCAAC+AGG | + | chr1.3:46126665-46126684 | None:intergenic | 40.0% |
| ! | ACCAGCTTGTTTAGAGTTCT+TGG | + | chr1.3:46125654-46125673 | None:intergenic | 40.0% |
| ! | CATTTTCCAAAGTTCATGGC+TGG | - | chr1.3:46126558-46126577 | MS.gene029814:intron | 40.0% |
| ! | CTGTTTCAGGTACGATGAAA+TGG | - | chr1.3:46125288-46125307 | MS.gene029814:CDS | 40.0% |
| ! | GCACCAATACTTTTGATCGA+AGG | - | chr1.3:46124843-46124862 | MS.gene029814:intron | 40.0% |
| ! | GGTACCTAATGCCCAATTTT+CGG | + | chr1.3:46126079-46126098 | None:intergenic | 40.0% |
| ! | GTACCTAATGCCCAATTTTC+GGG | + | chr1.3:46126078-46126097 | None:intergenic | 40.0% |
| ! | GTGCTACTCAGAATTCAATC+AGG | - | chr1.3:46125450-46125469 | MS.gene029814:intron | 40.0% |
| ! | GTGTTTGACACGAAAAGTGT+AGG | + | chr1.3:46124882-46124901 | None:intergenic | 40.0% |
| ! | TTAGTTGATACCAATGGAGC+AGG | - | chr1.3:46126836-46126855 | MS.gene029814:intron | 40.0% |
| !! | CATTCTGGGATTCAGGTATA+TGG | - | chr1.3:46126502-46126521 | MS.gene029814:intron | 40.0% |
| ATCGTACCTGAAACAGTCGT+AGG | + | chr1.3:46125284-46125303 | None:intergenic | 45.0% | |
| CAAACAGCACAAGTTCCTGT+AGG | + | chr1.3:46125815-46125834 | None:intergenic | 45.0% | |
| CAACCCGAAAATTGGGCATT+AGG | - | chr1.3:46126072-46126091 | MS.gene029814:intron | 45.0% | |
| CCATCTTGAGCAACACATAC+GGG | + | chr1.3:46126773-46126792 | None:intergenic | 45.0% | |
| CCCATCTTGAGCAACACATA+CGG | + | chr1.3:46126774-46126793 | None:intergenic | 45.0% | |
| CGCAGATAAATGGTGCAGAA+AGG | + | chr1.3:46126384-46126403 | None:intergenic | 45.0% | |
| GAATTCAATCAGGGTTGCTC+AGG | - | chr1.3:46125460-46125479 | MS.gene029814:intron | 45.0% | |
| GTGCTTATCTTCGGCAAGAA+TGG | + | chr1.3:46124431-46124450 | None:intergenic | 45.0% | |
| TGACCAGACTGAAAATGTCG+AGG | - | chr1.3:46126667-46126686 | MS.gene029814:intron | 45.0% | |
| TGGATTCAGGGGATACAGTA+AGG | + | chr1.3:46126232-46126251 | None:intergenic | 45.0% | |
| ! | CACGAAAAGTGTAGGACATC+AGG | + | chr1.3:46124874-46124893 | None:intergenic | 45.0% |
| ! | CCGTATGTGTTGCTCAAGAT+GGG | - | chr1.3:46126771-46126790 | MS.gene029814:intron | 45.0% |
| ! | CGGAAAAGACAAGTTTGGTG+AGG | - | chr1.3:46125622-46125641 | MS.gene029814:intron | 45.0% |
| ! | TCTCCTCGACATTTTCAGTC+TGG | + | chr1.3:46126673-46126692 | None:intergenic | 45.0% |
| ! | TCTGTGTCCGTGCTTCATTT+TGG | - | chr1.3:46124976-46124995 | MS.gene029814:intron | 45.0% |
| !! | ACTTGTGCTGTTTGTGTGGT+TGG | - | chr1.3:46125821-46125840 | MS.gene029814:intron | 45.0% |
| !! | AGGAACTTGTGCTGTTTGTG+TGG | - | chr1.3:46125817-46125836 | MS.gene029814:intron | 45.0% |
| !! | GAAGGTGTTCTTCTCGGTAT+GGG | - | chr1.3:46124215-46124234 | MS.gene029814:CDS | 45.0% |
| !! | GCTTTGGAAGGTGTTCTTCT+CGG | - | chr1.3:46124209-46124228 | MS.gene029814:CDS | 45.0% |
| !! | GGATTTGCATTCTGGGATTC+AGG | - | chr1.3:46126495-46126514 | MS.gene029814:intron | 45.0% |
| !! | TTTGTGTGGTTGGTGGTGAA+AGG | - | chr1.3:46125831-46125850 | MS.gene029814:intron | 45.0% |
| AAGGGCAATACCTGCTCCAT+TGG | + | chr1.3:46126849-46126868 | None:intergenic | 50.0% | |
| AATGTGGAGTACATCGCTGG+AGG | - | chr1.3:46125322-46125341 | MS.gene029814:intron | 50.0% | |
| ACAGCAGAGATGTCGAGAAG+GGG | + | chr1.3:46124245-46124264 | None:intergenic | 50.0% | |
| ACCAATGTAACTAGTGGCCC+CGG | + | chr1.3:46125597-46125616 | None:intergenic | 50.0% | |
| CGAGTTCTTCAAGGATCCAC+AGG | - | chr1.3:46126402-46126421 | MS.gene029814:intron | 50.0% | |
| CTCTGATGCCTTTGGCAACT+GGG | + | chr1.3:46126711-46126730 | None:intergenic | 50.0% | |
| GACAGCAGAGATGTCGAGAA+GGG | + | chr1.3:46124246-46124265 | None:intergenic | 50.0% | |
| GCATGCCGCAGCAAATAACA+AGG | - | chr1.3:46126268-46126287 | MS.gene029814:intron | 50.0% | |
| GTAGGAGATGCCTTTGTTGG+AGG | - | chr1.3:46127003-46127022 | MS.gene029814:intron | 50.0% | |
| TACCTCCCAGCCATGAACTT+TGG | + | chr1.3:46126567-46126586 | None:intergenic | 50.0% | |
| TTCCAAAGTTCATGGCTGGG+AGG | - | chr1.3:46126562-46126581 | MS.gene029814:intron | 50.0% | |
| ! | AGTGGATGCTTCAAGTTCCC+GGG | - | chr1.3:46125576-46125595 | MS.gene029814:intron | 50.0% |
| ! | CAGTGGATGCTTCAAGTTCC+CGG | - | chr1.3:46125575-46125594 | MS.gene029814:intron | 50.0% |
| ! | CCCGTATGTGTTGCTCAAGA+TGG | - | chr1.3:46126770-46126789 | MS.gene029814:intron | 50.0% |
| ! | GTTATTTGCTGCGGCATGCT+CGG | + | chr1.3:46126267-46126286 | None:intergenic | 50.0% |
| !! | AACGGTTCGGTACAGTGTAG+TGG | + | chr1.3:46125724-46125743 | None:intergenic | 50.0% |
| !! | GGAAGGTGTTCTTCTCGGTA+TGG | - | chr1.3:46124214-46124233 | MS.gene029814:CDS | 50.0% |
| !! | GGTTGGTGGTGAAAGGTAAG+AGG | - | chr1.3:46125838-46125857 | MS.gene029814:intron | 50.0% |
| !! | TGTGCTGTTTGTGTGGTTGG+TGG | - | chr1.3:46125824-46125843 | MS.gene029814:intron | 50.0% |
| CCAATGTAACTAGTGGCCCC+GGG | + | chr1.3:46125596-46125615 | None:intergenic | 55.0% | |
| CCTCTGATGCCTTTGGCAAC+TGG | + | chr1.3:46126712-46126731 | None:intergenic | 55.0% | |
| CGACAGCAGAGATGTCGAGA+AGG | + | chr1.3:46124247-46124266 | None:intergenic | 55.0% | |
| GGTAAGTGCAGCCAGACCTT+TGG | + | chr1.3:46127107-46127126 | None:intergenic | 55.0% | |
| TACGGCAGAGCTTTCTCCTG+TGG | + | chr1.3:46126421-46126440 | None:intergenic | 55.0% | |
| TTGCGTGCCTCTGATGCCTT+TGG | + | chr1.3:46126719-46126738 | None:intergenic | 55.0% | |
| ! | AGGCATCAGAGGCACGCAAA+AGG | - | chr1.3:46126720-46126739 | MS.gene029814:intron | 55.0% |
| ! | GTGGATGCTTCAAGTTCCCG+GGG | - | chr1.3:46125577-46125596 | MS.gene029814:intron | 55.0% |
| !! | CCAGTTGCCAAAGGCATCAG+AGG | - | chr1.3:46126709-46126728 | MS.gene029814:intron | 55.0% |
| CCCGGGGCCACTAGTTACAT+TGG | - | chr1.3:46125593-46125612 | MS.gene029814:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 46124206 | 46127149 | 46124206 | ID=MS.gene029814 |
| chr1.3 | mRNA | 46124206 | 46127149 | 46124206 | ID=MS.gene029814.t1;Parent=MS.gene029814 |
| chr1.3 | exon | 46127067 | 46127149 | 46127067 | ID=MS.gene029814.t1.exon1;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46127067 | 46127149 | 46127067 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| chr1.3 | exon | 46126897 | 46126950 | 46126897 | ID=MS.gene029814.t1.exon2;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46126897 | 46126950 | 46126897 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| chr1.3 | exon | 46126012 | 46126058 | 46126012 | ID=MS.gene029814.t1.exon3;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46126012 | 46126058 | 46126012 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| chr1.3 | exon | 46125874 | 46125905 | 46125874 | ID=MS.gene029814.t1.exon4;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46125874 | 46125905 | 46125874 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| chr1.3 | exon | 46125676 | 46125777 | 46125676 | ID=MS.gene029814.t1.exon5;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46125676 | 46125777 | 46125676 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| chr1.3 | exon | 46125503 | 46125570 | 46125503 | ID=MS.gene029814.t1.exon6;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46125503 | 46125570 | 46125503 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| chr1.3 | exon | 46125262 | 46125338 | 46125262 | ID=MS.gene029814.t1.exon7;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46125262 | 46125338 | 46125262 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| chr1.3 | exon | 46125066 | 46125163 | 46125066 | ID=MS.gene029814.t1.exon8;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46125066 | 46125163 | 46125066 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| chr1.3 | exon | 46124918 | 46124988 | 46124918 | ID=MS.gene029814.t1.exon9;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46124918 | 46124988 | 46124918 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| chr1.3 | exon | 46124772 | 46124838 | 46124772 | ID=MS.gene029814.t1.exon10;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46124772 | 46124838 | 46124772 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| chr1.3 | exon | 46124498 | 46124681 | 46124498 | ID=MS.gene029814.t1.exon11;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46124498 | 46124681 | 46124498 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| chr1.3 | exon | 46124206 | 46124348 | 46124206 | ID=MS.gene029814.t1.exon12;Parent=MS.gene029814.t1 |
| chr1.3 | CDS | 46124206 | 46124348 | 46124206 | ID=cds.MS.gene029814.t1;Parent=MS.gene029814.t1 |
| Gene Sequence |
| Protein sequence |
