AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029818

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029818.t1 MTR_1g064230 97.500 280 7 0 1 280 1 280 0.0 546
MS.gene029818.t1 MTR_4g104470 50.246 203 77 2 81 280 119 300 4.67e-60 193
MS.gene029818.t1 MTR_3g075500 41.429 280 132 6 15 278 25 288 4.30e-58 187
MS.gene029818.t1 MTR_3g075500 40.230 261 124 6 15 259 25 269 3.52e-50 166
MS.gene029818.t1 MTR_3g075500 45.977 87 44 1 195 278 108 194 4.19e-17 79.3
MS.gene029818.t1 MTR_3g075500 43.662 71 40 0 79 149 201 271 1.06e-13 69.7
MS.gene029818.t1 MTR_7g106440 37.762 286 135 7 12 275 27 291 3.67e-49 165
MS.gene029818.t1 MTR_1g045510 38.119 202 104 2 74 275 103 283 7.94e-45 153
MS.gene029818.t1 MTR_1g056520 41.270 189 98 1 84 272 108 283 9.57e-45 154
MS.gene029818.t1 MTR_3g027140 36.111 252 127 6 27 272 12 235 5.85e-37 131
MS.gene029818.t1 MTR_4g070080 49.398 83 42 0 192 274 2 84 3.82e-22 89.7
MS.gene029818.t1 MTR_4g070080 40.541 74 44 0 85 158 7 80 7.81e-12 61.6
MS.gene029818.t1 MTR_4g070080 49.383 81 41 0 192 272 2 82 2.21e-21 88.6
MS.gene029818.t1 MTR_4g070080 40.541 74 44 0 85 158 7 80 1.61e-11 61.6
MS.gene029818.t1 MTR_4g070140 50.588 85 42 0 190 274 2 86 7.37e-21 87.8
MS.gene029818.t1 MTR_4g070140 43.243 74 42 0 85 158 9 82 3.59e-13 67.0
MS.gene029818.t1 MTR_4g070190 47.619 84 44 0 191 274 3 86 8.36e-21 87.0
MS.gene029818.t1 MTR_4g070190 41.892 74 43 0 85 158 9 82 5.56e-12 63.2
MS.gene029818.t1 MTR_4g109540 48.148 81 42 0 197 277 43 123 1.11e-20 89.4
MS.gene029818.t1 MTR_4g109540 41.667 84 49 0 81 164 39 122 2.14e-14 71.6
MS.gene029818.t1 MTR_7g013740 43.023 86 49 0 192 277 36 121 7.27e-20 84.0
MS.gene029818.t1 MTR_7g013740 41.250 80 47 0 85 164 41 120 2.58e-13 66.2
MS.gene029818.t1 MTR_2g022950 30.890 191 114 3 86 275 62 235 8.18e-20 87.0
MS.gene029818.t1 MTR_2g022950 30.890 191 114 3 86 275 62 235 1.04e-19 86.7
MS.gene029818.t1 MTR_3g025880 46.667 90 48 0 191 280 39 128 1.26e-19 88.6
MS.gene029818.t1 MTR_3g025880 39.744 78 47 0 81 158 41 118 1.82e-11 64.3
MS.gene029818.t1 MTR_4g109540 48.148 81 42 0 197 277 51 131 1.38e-19 86.3
MS.gene029818.t1 MTR_4g109540 38.043 92 49 1 81 164 39 130 6.39e-12 64.7
MS.gene029818.t1 MTR_3g084040 50.602 83 40 1 194 276 34 115 2.84e-19 82.4
MS.gene029818.t1 MTR_3g084040 42.466 73 41 1 85 157 37 108 9.04e-11 59.3
MS.gene029818.t1 MTR_2g022950 30.890 191 114 3 86 275 62 235 4.43e-19 86.7
MS.gene029818.t1 MTR_2g022950 30.570 193 114 6 82 270 153 329 1.17e-15 76.6
MS.gene029818.t1 MTR_3g101370 31.122 196 112 5 83 275 92 267 6.02e-19 85.1
MS.gene029818.t1 MTR_2g097960 32.653 196 106 6 86 278 17 189 6.16e-19 86.3
MS.gene029818.t1 MTR_2g097960 27.273 231 134 7 70 279 94 311 3.45e-13 69.3
MS.gene029818.t1 MTR_3g101370 31.122 196 112 5 83 275 92 267 4.28e-18 84.0
MS.gene029818.t1 MTR_3g101370 28.037 214 136 6 70 280 172 370 1.45e-16 79.3
MS.gene029818.t1 MTR_3g080130 43.902 82 46 0 196 277 36 117 5.34e-18 78.6
MS.gene029818.t1 MTR_3g080130 41.250 80 47 0 85 164 37 116 1.34e-14 69.7
MS.gene029818.t1 MTR_4g131970 28.899 218 128 7 70 279 153 351 6.76e-18 83.2
MS.gene029818.t1 MTR_4g131970 29.231 195 114 4 84 275 74 247 1.26e-16 79.7
MS.gene029818.t1 MTR_7g013730 40.476 84 50 0 197 280 41 124 1.04e-17 80.9
MS.gene029818.t1 MTR_7g013730 41.892 74 43 0 85 158 41 114 1.38e-13 69.3
MS.gene029818.t1 MTR_2g026180 29.082 196 123 6 85 276 5 188 1.52e-17 82.4
MS.gene029818.t1 MTR_1g020080 28.638 213 135 5 70 280 176 373 2.93e-17 81.6
MS.gene029818.t1 MTR_1g020080 28.866 194 118 3 83 275 96 270 3.73e-16 78.2
MS.gene029818.t1 MTR_1g020080 28.866 194 118 3 83 275 96 270 9.62e-17 79.0
MS.gene029818.t1 MTR_5g097580 29.630 189 118 5 85 272 7 181 1.36e-16 79.7
MS.gene029818.t1 MTR_3g103420 31.122 196 127 4 81 275 7 195 1.56e-16 79.0
MS.gene029818.t1 MTR_5g097580 29.630 189 118 5 85 272 7 181 1.78e-16 79.3
MS.gene029818.t1 MTR_4g085540 29.897 194 111 3 86 279 36 204 5.84e-16 78.2
MS.gene029818.t1 MTR_4g085540 27.320 194 119 4 86 279 124 295 8.40e-16 77.4
MS.gene029818.t1 MTR_4g085540 27.041 196 129 4 86 279 215 398 6.65e-12 65.9
MS.gene029818.t1 MTR_4g086600 29.082 196 122 3 86 280 118 297 9.18e-16 77.0
MS.gene029818.t1 MTR_4g086600 27.979 193 125 5 86 270 216 402 1.32e-11 64.7
MS.gene029818.t1 MTR_3g082650 24.873 197 116 4 85 278 19 186 1.50e-15 75.9
MS.gene029818.t1 MTR_3g055990 28.571 189 120 5 85 272 7 181 1.81e-15 76.3
MS.gene029818.t1 MTR_3g055990 28.571 189 120 5 85 272 7 181 2.02e-15 76.3
MS.gene029818.t1 MTR_5g030020 28.283 198 120 4 83 277 95 273 3.24e-15 74.7
MS.gene029818.t1 MTR_7g102730 25.773 194 122 4 86 279 100 271 3.31e-15 75.9
MS.gene029818.t1 MTR_7g102730 26.606 218 142 6 63 278 172 373 8.49e-14 71.6
MS.gene029818.t1 MTR_1g019150 28.804 184 106 4 86 269 34 192 4.23e-15 75.5
MS.gene029818.t1 MTR_1g019150 25.000 196 121 4 86 279 122 293 2.79e-12 67.0
MS.gene029818.t1 MTR_4g124940 29.101 189 103 3 86 272 48 207 8.77e-15 73.9
MS.gene029818.t1 MTR_4g124940 30.256 195 123 3 85 270 132 322 6.87e-14 71.6
MS.gene029818.t1 MTR_1g073690 29.146 199 123 6 85 276 7 194 2.26e-14 73.2
MS.gene029818.t1 MTR_7g105260 43.902 82 46 0 197 278 33 114 3.35e-14 68.6
MS.gene029818.t1 MTR_7g105260 34.951 103 57 1 85 187 33 125 2.55e-12 63.5
MS.gene029818.t1 MTR_3g099590 26.271 236 146 7 41 272 48 259 6.41e-14 70.9
MS.gene029818.t1 MTR_1g097440 29.412 187 107 3 83 269 29 190 7.83e-14 71.6
MS.gene029818.t1 MTR_6g040070 29.231 195 114 5 86 279 17 188 1.08e-13 71.2
MS.gene029818.t1 MTR_6g040070 26.154 195 133 5 86 279 107 291 1.01e-12 68.6
MS.gene029818.t1 MTR_3g095230 28.421 190 123 6 83 270 213 391 1.08e-13 71.2
MS.gene029818.t1 MTR_3g095230 40.964 83 47 2 78 159 311 392 4.16e-11 63.5
MS.gene029818.t1 MTR_3g095230 28.421 190 123 6 83 270 213 391 1.18e-13 71.2
MS.gene029818.t1 MTR_3g095230 40.964 83 47 2 78 159 311 392 4.32e-11 63.5
MS.gene029818.t1 MTR_1g061870 26.263 198 116 6 86 279 105 276 1.76e-13 70.5
MS.gene029818.t1 MTR_1g061870 28.061 196 123 5 86 279 196 375 1.50e-11 64.7
MS.gene029818.t1 MTR_6g040190 28.205 195 113 5 86 279 115 283 2.53e-13 70.1
MS.gene029818.t1 MTR_6g040190 28.426 197 126 7 86 279 202 386 3.97e-12 66.6
MS.gene029818.t1 MTR_8g092550 28.947 190 121 7 83 270 200 377 2.68e-13 70.1
MS.gene029818.t1 MTR_8g092550 40.964 83 47 2 78 159 297 378 7.73e-11 62.8
MS.gene029818.t1 MTR_3g109090 27.807 187 108 3 86 272 62 221 7.71e-13 68.6
MS.gene029818.t1 MTR_3g109090 26.154 195 130 2 86 270 147 337 8.08e-13 68.6
MS.gene029818.t1 MTR_3g109090 27.807 187 108 3 86 272 46 205 8.05e-13 68.6
MS.gene029818.t1 MTR_3g109090 26.154 195 130 2 86 270 131 321 8.43e-13 68.2
MS.gene029818.t1 MTR_3g014000 42.857 77 37 1 206 275 40 116 1.10e-12 64.3
MS.gene029818.t1 MTR_8g022050 28.270 237 142 6 47 270 118 339 1.19e-12 67.8
MS.gene029818.t1 MTR_8g022050 26.866 201 118 3 74 272 50 223 7.50e-12 65.5
MS.gene029818.t1 MTR_3g084040 46.970 66 34 1 194 259 34 98 1.91e-12 62.8
MS.gene029818.t1 MTR_3g029580 32.967 91 61 0 85 175 33 123 2.44e-12 63.2
MS.gene029818.t1 MTR_6g004810 22.335 197 121 4 85 278 46 213 4.09e-12 66.2
MS.gene029818.t1 MTR_1g097280 31.452 124 68 3 81 201 26 135 8.77e-12 65.5
MS.gene029818.t1 MTR_4g063560 34.615 78 51 0 80 157 29 106 1.65e-11 60.5
MS.gene029818.t1 MTR_1g036430 26.263 198 116 7 81 254 159 350 2.72e-11 63.9
MS.gene029818.t1 MTR_2g096560 39.744 78 47 0 85 162 8 85 2.74e-11 59.3
MS.gene029818.t1 MTR_5g017280 27.749 191 110 5 83 272 3 166 2.83e-11 63.5
MS.gene029818.t1 MTR_5g017280 27.749 191 110 5 83 272 3 166 2.87e-11 63.5
MS.gene029818.t1 MTR_3g102040 28.230 209 136 4 73 279 192 388 2.98e-11 63.9
MS.gene029818.t1 MTR_3g102040 26.904 197 118 4 86 280 114 286 4.07e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029818.t1 AT2G37220 63.136 236 80 3 49 279 54 287 1.62e-92 275
MS.gene029818.t1 AT2G37220 45.238 84 46 0 85 168 205 288 5.99e-17 79.3
MS.gene029818.t1 AT5G50250 42.268 291 135 5 2 278 18 289 8.20e-60 192
MS.gene029818.t1 AT4G24770 48.624 218 94 1 62 279 128 327 1.01e-58 190
MS.gene029818.t1 AT4G24770 48.624 218 94 1 62 279 128 327 1.01e-58 190
MS.gene029818.t1 AT3G52380 45.078 193 97 3 85 277 117 300 3.90e-48 163
MS.gene029818.t1 AT1G60000 35.971 278 149 6 4 275 2 256 1.82e-45 154
MS.gene029818.t1 AT3G53460 58.101 179 56 6 16 177 14 190 1.07e-44 154
MS.gene029818.t1 AT3G53460 68.675 83 26 0 196 278 257 339 4.34e-33 124
MS.gene029818.t1 AT3G53460 48.810 84 43 0 85 168 258 341 8.04e-19 85.5
MS.gene029818.t1 AT3G53460 45.882 85 46 0 195 279 98 182 4.27e-13 68.9
MS.gene029818.t1 AT3G53460 58.101 179 56 6 16 177 14 190 1.07e-44 154
MS.gene029818.t1 AT3G53460 68.675 83 26 0 196 278 257 339 4.34e-33 124
MS.gene029818.t1 AT3G53460 48.810 84 43 0 85 168 258 341 8.04e-19 85.5
MS.gene029818.t1 AT3G53460 45.882 85 46 0 195 279 98 182 4.27e-13 68.9
MS.gene029818.t1 AT3G53460 58.101 179 56 6 16 177 14 190 1.07e-44 154
MS.gene029818.t1 AT3G53460 68.675 83 26 0 196 278 257 339 4.34e-33 124
MS.gene029818.t1 AT3G53460 48.810 84 43 0 85 168 258 341 8.04e-19 85.5
MS.gene029818.t1 AT3G53460 45.882 85 46 0 195 279 98 182 4.27e-13 68.9
MS.gene029818.t1 AT3G53460 52.500 200 55 7 16 177 14 211 5.24e-41 145
MS.gene029818.t1 AT3G53460 68.675 83 26 0 196 278 278 360 6.08e-33 124
MS.gene029818.t1 AT3G53460 48.810 84 43 0 85 168 279 362 8.38e-19 85.5
MS.gene029818.t1 AT3G53460 35.849 106 47 1 195 279 98 203 8.19e-11 62.4
MS.gene029818.t1 AT3G52150 41.026 195 104 2 78 272 70 253 5.99e-40 139
MS.gene029818.t1 AT3G52150 41.026 195 104 2 78 272 70 253 5.99e-40 139
MS.gene029818.t1 AT2G35410 30.712 267 157 6 11 269 22 268 2.60e-29 113
MS.gene029818.t1 AT1G01080 35.263 190 102 3 86 269 110 284 1.12e-25 103
MS.gene029818.t1 AT1G01080 35.079 191 102 4 86 269 110 285 8.15e-25 100
MS.gene029818.t1 AT1G01080 35.429 175 93 2 86 254 110 270 3.70e-24 99.0
MS.gene029818.t1 AT3G23830 53.750 80 37 0 196 275 35 114 1.38e-22 90.9
MS.gene029818.t1 AT3G23830 40.000 85 49 1 85 167 36 120 3.16e-13 65.9
MS.gene029818.t1 AT3G23830 53.750 80 37 0 196 275 35 114 1.38e-22 90.9
MS.gene029818.t1 AT3G23830 40.000 85 49 1 85 167 36 120 3.16e-13 65.9
MS.gene029818.t1 AT4G13850 51.250 80 39 0 197 276 36 115 4.47e-22 89.4
MS.gene029818.t1 AT4G13850 40.000 80 48 0 85 164 36 115 3.27e-13 65.9
MS.gene029818.t1 AT4G13850 51.250 80 39 0 197 276 36 115 6.11e-22 89.7
MS.gene029818.t1 AT4G13850 40.000 85 49 1 85 167 36 120 2.13e-13 66.6
MS.gene029818.t1 AT4G13850 51.250 80 39 0 197 276 36 115 7.70e-22 89.7
MS.gene029818.t1 AT4G13850 40.000 85 49 1 85 167 36 120 2.58e-13 66.6
MS.gene029818.t1 AT4G13850 51.250 80 39 0 197 276 36 115 8.74e-22 89.7
MS.gene029818.t1 AT4G13850 40.000 85 49 1 85 167 36 120 2.87e-13 66.6
MS.gene029818.t1 AT2G21660 50.000 82 41 0 191 272 3 84 1.86e-20 85.9
MS.gene029818.t1 AT2G21660 41.892 74 43 0 85 158 9 82 3.20e-11 60.8
MS.gene029818.t1 AT2G21660 50.000 82 41 0 191 272 3 84 2.79e-20 85.9
MS.gene029818.t1 AT2G21660 41.892 74 43 0 85 158 9 82 4.35e-11 60.8
MS.gene029818.t1 AT3G16380 29.553 291 168 9 1 278 119 385 1.02e-19 89.0
MS.gene029818.t1 AT3G16380 30.412 194 112 5 86 279 114 284 4.27e-14 72.4
MS.gene029818.t1 AT5G61030 45.783 83 45 0 194 276 38 120 7.34e-19 85.1
MS.gene029818.t1 AT5G61030 44.595 74 41 0 85 158 41 114 2.10e-12 66.6
MS.gene029818.t1 AT5G61030 45.783 83 45 0 194 276 38 120 7.34e-19 85.1
MS.gene029818.t1 AT5G61030 44.595 74 41 0 85 158 41 114 2.10e-12 66.6
MS.gene029818.t1 AT4G14300 32.653 196 118 6 85 276 7 192 1.08e-18 85.5
MS.gene029818.t1 AT4G14300 32.653 196 118 6 85 276 7 192 1.08e-18 85.5
MS.gene029818.t1 AT5G19350 32.990 194 107 5 86 278 26 197 2.22e-18 84.7
MS.gene029818.t1 AT5G19350 25.000 196 132 4 82 270 114 301 3.74e-12 66.6
MS.gene029818.t1 AT5G19350 32.990 194 107 5 86 278 26 197 2.24e-18 84.7
MS.gene029818.t1 AT4G39260 46.429 84 45 0 192 275 2 85 3.09e-18 78.2
MS.gene029818.t1 AT4G39260 39.189 74 45 0 85 158 7 80 4.36e-11 58.9
MS.gene029818.t1 AT5G40490 26.941 219 123 5 68 278 21 210 3.16e-18 84.3
MS.gene029818.t1 AT5G40490 34.653 101 63 1 83 183 129 226 9.44e-11 62.4
MS.gene029818.t1 AT4G34110 28.866 194 116 4 86 279 126 297 6.20e-18 84.0
MS.gene029818.t1 AT4G34110 29.592 196 113 3 83 278 35 205 5.35e-17 81.3
MS.gene029818.t1 AT4G34110 26.087 207 139 4 75 279 206 400 1.77e-11 64.7
MS.gene029818.t1 AT5G54900 30.583 206 114 7 82 279 152 336 1.41e-17 82.0
MS.gene029818.t1 AT5G54900 28.866 194 113 4 86 275 62 234 1.84e-16 79.0
MS.gene029818.t1 AT1G74230 48.101 79 40 1 194 272 32 109 1.84e-17 80.9
MS.gene029818.t1 AT1G74230 44.595 74 40 1 85 158 35 107 1.96e-11 63.5
MS.gene029818.t1 AT2G33410 32.143 196 119 6 85 276 7 192 2.24e-17 81.6
MS.gene029818.t1 AT1G34140 29.744 195 128 4 86 280 121 306 3.43e-17 81.3
MS.gene029818.t1 AT1G49600 32.524 206 112 5 74 278 115 294 3.74e-17 81.3
MS.gene029818.t1 AT1G49600 29.557 203 128 6 82 279 211 403 6.92e-12 65.9
MS.gene029818.t1 AT1G49600 32.524 206 112 5 74 278 115 294 3.74e-17 81.3
MS.gene029818.t1 AT1G49600 29.557 203 128 6 82 279 211 403 6.92e-12 65.9
MS.gene029818.t1 AT5G55550 27.128 188 128 4 85 272 7 185 4.31e-17 81.3
MS.gene029818.t1 AT5G55550 27.128 188 128 4 85 272 7 185 4.31e-17 81.3
MS.gene029818.t1 AT5G55550 27.128 188 128 4 85 272 7 185 4.31e-17 81.3
MS.gene029818.t1 AT5G55550 27.128 188 128 4 85 272 7 185 4.31e-17 81.3
MS.gene029818.t1 AT4G26650 26.804 194 124 5 85 272 13 194 4.77e-17 80.9
MS.gene029818.t1 AT4G39260 45.679 81 44 0 192 272 2 82 4.94e-17 75.9
MS.gene029818.t1 AT4G26650 26.804 194 124 5 85 272 16 197 4.95e-17 80.9
MS.gene029818.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.59e-17 80.9
MS.gene029818.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.59e-17 80.9
MS.gene029818.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.59e-17 80.9
MS.gene029818.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.59e-17 80.9
MS.gene029818.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.59e-17 80.9
MS.gene029818.t1 AT1G11650 29.843 191 114 3 86 275 64 235 1.09e-16 79.0
MS.gene029818.t1 AT1G49600 32.524 206 112 5 74 278 115 294 1.20e-16 79.7
MS.gene029818.t1 AT1G49600 29.412 204 129 6 82 280 211 404 3.69e-12 66.6
MS.gene029818.t1 AT4G39260 45.679 81 44 0 192 272 2 82 1.36e-16 75.9
MS.gene029818.t1 AT1G47500 31.122 196 114 4 83 275 102 279 1.91e-16 78.2
MS.gene029818.t1 AT3G19130 32.039 206 113 5 74 278 104 283 2.66e-16 79.0
MS.gene029818.t1 AT3G19130 27.184 206 136 5 82 280 200 398 9.46e-11 62.4
MS.gene029818.t1 AT1G11650 30.890 191 112 4 86 275 64 235 2.77e-16 78.6
MS.gene029818.t1 AT1G11650 28.774 212 127 6 72 279 147 338 1.58e-15 76.3
MS.gene029818.t1 AT1G54080 32.178 202 109 5 86 270 150 340 3.00e-16 78.6
MS.gene029818.t1 AT1G54080 27.228 202 116 4 74 272 51 224 1.14e-12 68.2
MS.gene029818.t1 AT1G17640 28.358 201 107 5 85 278 67 237 3.95e-16 77.8
MS.gene029818.t1 AT1G17640 28.358 201 107 5 85 278 67 237 3.95e-16 77.8
MS.gene029818.t1 AT1G17640 28.358 201 107 5 85 278 67 237 3.95e-16 77.8
MS.gene029818.t1 AT2G23350 29.381 194 112 3 86 279 48 216 4.08e-16 78.6
MS.gene029818.t1 AT2G23350 28.205 195 118 4 86 280 136 308 3.51e-15 75.9
MS.gene029818.t1 AT2G23350 30.000 200 118 5 86 279 227 410 1.28e-12 68.2
MS.gene029818.t1 AT1G47500 31.122 196 114 4 83 275 102 279 7.63e-16 77.4
MS.gene029818.t1 AT1G47500 28.293 205 128 5 82 280 197 388 5.21e-14 72.0
MS.gene029818.t1 AT1G18630 42.529 87 50 0 188 274 28 114 9.62e-16 73.2
MS.gene029818.t1 AT1G71770 28.856 201 117 4 86 280 148 328 1.85e-15 76.6
MS.gene029818.t1 AT1G71770 28.922 204 130 6 77 279 235 424 5.07e-14 72.4
MS.gene029818.t1 AT1G71770 28.191 188 109 4 82 269 57 218 2.89e-12 67.0
MS.gene029818.t1 AT1G71770 28.856 201 117 4 86 280 148 328 1.85e-15 76.6
MS.gene029818.t1 AT1G71770 28.922 204 130 6 77 279 235 424 5.07e-14 72.4
MS.gene029818.t1 AT1G71770 28.191 188 109 4 82 269 57 218 2.89e-12 67.0
MS.gene029818.t1 AT5G06210 42.500 80 46 0 196 275 34 113 2.02e-15 72.0
MS.gene029818.t1 AT5G06210 37.838 74 46 0 85 158 35 108 7.39e-12 62.4
MS.gene029818.t1 AT5G40490 26.064 188 107 4 94 278 35 193 2.40e-15 75.9
MS.gene029818.t1 AT5G40490 34.653 101 63 1 83 183 112 209 6.14e-11 62.8
MS.gene029818.t1 AT3G26420 43.902 82 46 0 191 272 2 83 2.96e-15 73.9
MS.gene029818.t1 AT3G26420 35.714 84 54 0 79 162 2 85 3.92e-12 65.1
MS.gene029818.t1 AT1G47490 29.592 196 117 4 83 275 100 277 3.49e-15 74.7
MS.gene029818.t1 AT1G22760 30.457 197 111 6 86 279 138 311 4.39e-15 75.5
MS.gene029818.t1 AT1G22760 26.906 223 150 6 57 279 205 414 4.85e-13 69.3
MS.gene029818.t1 AT1G22760 26.904 197 118 4 82 278 47 217 1.25e-11 65.1
MS.gene029818.t1 AT5G47620 28.042 189 121 7 85 272 7 181 7.88e-15 74.3
MS.gene029818.t1 AT5G47620 28.042 189 121 7 85 272 7 181 7.88e-15 74.3
MS.gene029818.t1 AT5G47620 28.042 189 121 7 85 272 7 181 7.88e-15 74.3
MS.gene029818.t1 AT1G47490 29.592 196 117 4 83 275 100 277 1.16e-14 73.9
MS.gene029818.t1 AT1G47490 27.451 204 131 6 82 280 195 386 9.49e-13 68.2
MS.gene029818.t1 AT5G09880 28.218 202 126 6 73 270 154 340 1.58e-14 73.6
MS.gene029818.t1 AT1G54080 31.553 206 109 6 86 270 150 344 1.66e-14 73.6
MS.gene029818.t1 AT1G54080 26.699 206 116 5 74 272 51 228 4.83e-11 63.2
MS.gene029818.t1 AT3G07810 28.497 193 125 5 81 272 3 183 1.89e-14 73.6
MS.gene029818.t1 AT3G07810 29.293 198 117 6 81 272 3 183 2.10e-14 73.2
MS.gene029818.t1 AT3G13224 28.061 196 112 6 69 261 8 177 3.00e-14 70.9
MS.gene029818.t1 AT3G13224 27.273 209 123 6 69 274 8 190 3.24e-14 72.4
MS.gene029818.t1 AT3G13224 26.289 194 118 4 84 274 10 181 4.73e-14 71.6
MS.gene029818.t1 AT4G27000 29.016 193 113 4 86 275 82 253 4.74e-14 72.0
MS.gene029818.t1 AT4G27000 27.228 202 126 4 82 279 171 355 3.74e-13 69.3
MS.gene029818.t1 AT3G08000 41.975 81 47 0 197 277 42 122 5.42e-14 68.2
MS.gene029818.t1 AT3G08000 38.298 94 51 1 85 171 42 135 3.58e-12 63.2
MS.gene029818.t1 AT1G49760 26.804 194 120 4 86 279 135 306 9.56e-14 71.6
MS.gene029818.t1 AT1G49760 28.571 196 126 4 86 279 226 409 5.54e-12 66.2
MS.gene029818.t1 AT1G49760 26.804 194 120 4 86 279 135 306 9.56e-14 71.6
MS.gene029818.t1 AT1G49760 28.571 196 126 4 86 279 226 409 5.54e-12 66.2
MS.gene029818.t1 AT4G36960 29.851 201 109 6 83 278 2 175 1.64e-13 70.5
MS.gene029818.t1 AT4G36960 29.851 201 109 6 83 278 2 175 1.64e-13 70.5
MS.gene029818.t1 AT5G41690 26.214 206 130 6 84 276 68 264 2.97e-13 70.1
MS.gene029818.t1 AT5G41690 26.214 206 130 6 84 276 68 264 2.97e-13 70.1
MS.gene029818.t1 AT5G41690 26.214 206 130 6 84 276 68 264 2.97e-13 70.1
MS.gene029818.t1 AT5G47620 26.087 207 124 6 85 272 7 203 3.12e-13 69.7
MS.gene029818.t1 AT1G17370 28.511 235 141 7 47 270 110 328 6.44e-13 68.6
MS.gene029818.t1 AT1G17370 26.866 201 118 3 74 272 42 215 3.53e-12 66.6
MS.gene029818.t1 AT4G13860 45.946 74 40 0 196 269 3 76 6.83e-13 63.5
MS.gene029818.t1 AT4G13860 44.595 74 41 0 85 158 4 77 3.85e-11 58.9
MS.gene029818.t1 AT3G14100 28.319 226 125 5 47 255 115 320 8.40e-13 68.6
MS.gene029818.t1 AT3G14100 28.218 202 114 4 74 272 47 220 1.78e-12 67.4
MS.gene029818.t1 AT4G09040 27.041 196 125 4 85 279 35 213 9.35e-13 67.0
MS.gene029818.t1 AT4G09040 26.020 196 127 3 85 279 95 273 1.05e-12 67.4
MS.gene029818.t1 AT1G17370 27.848 237 143 6 47 270 110 331 1.34e-12 67.8
MS.gene029818.t1 AT1G17370 26.866 201 118 3 74 272 42 215 3.36e-12 66.6
MS.gene029818.t1 AT1G60650 36.709 79 50 0 195 273 11 89 3.23e-12 65.9
MS.gene029818.t1 AT1G60650 36.709 79 50 0 195 273 11 89 3.23e-12 65.9
MS.gene029818.t1 AT4G39260 44.776 67 37 0 192 258 2 68 3.99e-12 62.0
MS.gene029818.t1 AT5G47320 41.250 80 47 0 197 276 32 111 4.45e-12 64.3
MS.gene029818.t1 AT1G48920 28.646 192 122 7 77 264 290 470 1.08e-11 65.5
MS.gene029818.t1 AT5G59865 40.000 85 49 1 194 278 24 106 4.32e-11 59.3
MS.gene029818.t1 AT2G36660 27.174 184 109 4 86 269 26 184 6.95e-11 62.8
MS.gene029818.t1 AT4G16280 27.957 186 112 5 74 259 110 273 9.36e-11 62.4

Find 82 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGAAAAGGGTTTGAAATT+AGG 0.163448 1.3:-46267244 None:intergenic
AGGAAAAGGGTTTGAAATTA+GGG 0.296680 1.3:-46267243 None:intergenic
ACTGGAAGAAGCAGGGGATT+TGG 0.326987 1.3:+46267771 MS.gene029818:CDS
AGTGGAAGATCTAGAGGATT+TGG 0.327784 1.3:+46268533 MS.gene029818:CDS
CATGTTTACCGCGCCATCTA+AGG 0.341843 1.3:-46268603 None:intergenic
CGTAGTGAGAACTCCCGTTT+TGG 0.363398 1.3:+46268332 MS.gene029818:CDS
TTCATGTTGGTAACCTTGCT+TGG 0.366467 1.3:+46268429 MS.gene029818:CDS
TCATGTTGGTAACCTTGCTT+GGG 0.376247 1.3:+46268430 MS.gene029818:CDS
TTTGGTGAGAATCCTCGTTT+TGG 0.384959 1.3:+46268350 MS.gene029818:CDS
CATCAAAGGTATCTTCTTCC+TGG 0.389538 1.3:-46267345 None:intergenic
AATCCTCAAAATTGACGCTT+TGG 0.396059 1.3:-46268931 None:intergenic
AGAAACAGAGGAAAAGGAAA+AGG 0.398906 1.3:-46267257 None:intergenic
TTGGCACTTGAGTCATTGTT+TGG 0.407651 1.3:+46268464 MS.gene029818:CDS
TGGTGAACAAGGACAGGTTT+TGG 0.408469 1.3:+46268484 MS.gene029818:CDS
AGTGCTATTCGAACCTTAGA+TGG 0.414306 1.3:+46268590 MS.gene029818:CDS
TGCTTGGGGTGTTGACACCT+TGG 0.424005 1.3:+46268445 MS.gene029818:CDS
ACGAGGATTCTCACCAAAAC+GGG 0.433272 1.3:-46268345 None:intergenic
GGGTTTGAAATTAGGGTTGA+GGG 0.444181 1.3:-46267236 None:intergenic
GTGATTTATGATAAGACTAC+TGG 0.448929 1.3:+46267753 MS.gene029818:CDS
CCAACAAACAACCTCTGGTT+AGG 0.451368 1.3:-46267394 None:intergenic
GAAACAGAGGAAAAGGAAAA+GGG 0.452226 1.3:-46267256 None:intergenic
ACGAAGAGAAACAGAGGAAA+AGG 0.456325 1.3:-46267263 None:intergenic
CGCTTTGGTCTACTATCAGC+TGG 0.467712 1.3:-46268916 None:intergenic
CCTAACCAGAGGTTGTTTGT+TGG 0.469968 1.3:+46267394 MS.gene029818:CDS
CTATCTGAAGAACCACCTCT+TGG 0.481583 1.3:-46268395 None:intergenic
GGAGTGAAGAGAAACATTGA+GGG 0.482925 1.3:-46267204 None:intergenic
AACGAGGATTCTCACCAAAA+CGG 0.486728 1.3:-46268346 None:intergenic
CTCTGGTTAGGAGAGTAACT+AGG 0.488332 1.3:-46267382 None:intergenic
ATAAGACTACTGGAAGAAGC+AGG 0.490077 1.3:+46267763 MS.gene029818:CDS
ATTGTTTGGTGAACAAGGAC+AGG 0.493154 1.3:+46268478 MS.gene029818:CDS
GGGAGTGAAGAGAAACATTG+AGG 0.496008 1.3:-46267205 None:intergenic
TAGGGTTGAGGGAAAGAGAA+GGG 0.515631 1.3:-46267225 None:intergenic
AAACGCTGGGAATGTTGAAA+TGG 0.516801 1.3:+46267465 MS.gene029818:CDS
AAGCAAAGGTAATCTATGAC+AGG 0.517595 1.3:+46268507 MS.gene029818:CDS
GTAATCTATGACAGGGAAAG+TGG 0.519710 1.3:+46268515 MS.gene029818:CDS
TTAGGGTTGAGGGAAAGAGA+AGG 0.521062 1.3:-46267226 None:intergenic
GCGGCTGCTCAGCAGTTGAA+TGG 0.528626 1.3:+46267828 MS.gene029818:CDS
GAAGAAGATACCTTTGATGA+TGG 0.530298 1.3:+46267349 MS.gene029818:CDS
TCTGAAGAACCACCTCTTGG+AGG 0.535648 1.3:-46268392 None:intergenic
GGTTACCAACAAACAACCTC+TGG 0.538562 1.3:-46267399 None:intergenic
TACTATCAGCTGGTGAGACT+CGG 0.543911 1.3:-46268906 None:intergenic
TCTGGTTAGGAGAGTAACTA+GGG 0.549336 1.3:-46267381 None:intergenic
CGATGGGAAATAGACAAAGA+TGG 0.554421 1.3:-46267286 None:intergenic
CACTGTCAACACTGAAAGGA+AGG 0.558406 1.3:-46267420 None:intergenic
GAAGAGTGATGGAAGTACTA+AGG 0.558474 1.3:-46267170 None:intergenic
TGTTTCTTCTGAATTTGACC+AGG 0.566886 1.3:+46267327 MS.gene029818:CDS
AGGGTTTGAAATTAGGGTTG+AGG 0.569323 1.3:-46267237 None:intergenic
GGAAATTTACAGGTGGTGGA+TGG 0.571010 1.3:+46268269 MS.gene029818:intron
GAGTCATTGTTTGGTGAACA+AGG 0.574217 1.3:+46268473 MS.gene029818:CDS
GACTTTCAGTAGCGCTGATG+AGG 0.578722 1.3:+46268562 MS.gene029818:CDS
AGAGAATTGAGAGTGAATGC+TGG 0.579689 1.3:+46268293 MS.gene029818:CDS
TTTGGTGGTGATCGTTCTAG+AGG 0.580010 1.3:+46268368 MS.gene029818:CDS
TGAGCACTGTCAACACTGAA+AGG 0.583654 1.3:-46267424 None:intergenic
AGGGAAAGTGGAAGATCTAG+AGG 0.591000 1.3:+46268527 MS.gene029818:CDS
GGTATCATCACCATCATCAA+AGG 0.592983 1.3:-46267359 None:intergenic
TGTTACTATGTCTTCTGCTG+CGG 0.604372 1.3:+46267797 MS.gene029818:CDS
GGATGTTGCAGAGGAAGACA+TGG 0.611160 1.3:-46267149 None:intergenic
TAAGACTACTGGAAGAAGCA+GGG 0.613089 1.3:+46267764 MS.gene029818:CDS
CAACACGAGAAATGAAACGA+TGG 0.613411 1.3:-46267303 None:intergenic
AACACGAGAAATGAAACGAT+GGG 0.615472 1.3:-46267302 None:intergenic
TGGGAATGTTGAAATGGTTG+AGG 0.621531 1.3:+46267471 MS.gene029818:CDS
TTCTGCTGCGGAAGTTGAAG+CGG 0.622597 1.3:+46267809 MS.gene029818:CDS
AGGTGTCAACACCCCAAGCA+AGG 0.628607 1.3:-46268442 None:intergenic
CATGTTGGTAACCTTGCTTG+GGG 0.635880 1.3:+46268431 MS.gene029818:CDS
AACGGGAGTTCTCACTACGA+GGG 0.636934 1.3:-46268328 None:intergenic
AGCAAAGGTAATCTATGACA+GGG 0.637693 1.3:+46268508 MS.gene029818:CDS
AAGACTACTGGAAGAAGCAG+GGG 0.638733 1.3:+46267765 MS.gene029818:CDS
AAACAATGACTCAAGTGCCA+AGG 0.640916 1.3:-46268462 None:intergenic
AAGTACTAAGGATGTTGCAG+AGG 0.643340 1.3:-46267158 None:intergenic
TCTAGAGGTCCTCCAAGAGG+TGG 0.648673 1.3:+46268383 MS.gene029818:CDS
AGATGGACGAAGAGAAACAG+AGG 0.649696 1.3:-46267269 None:intergenic
ACGGGAGTTCTCACTACGAG+GGG 0.652442 1.3:-46268327 None:intergenic
CAAGGTTACCAACATGAACA+CGG 0.652532 1.3:-46268424 None:intergenic
GAGTGAAGAGAAACATTGAG+GGG 0.655321 1.3:-46267203 None:intergenic
AGTGACAACCGTGTTCATGT+TGG 0.658546 1.3:+46268416 MS.gene029818:CDS
AAACGGGAGTTCTCACTACG+AGG 0.662477 1.3:-46268329 None:intergenic
CGTTCTAGAGGTCCTCCAAG+AGG 0.680337 1.3:+46268380 MS.gene029818:CDS
TATTCGAACCTTAGATGGCG+CGG 0.688538 1.3:+46268595 MS.gene029818:CDS
CTAGTTACTCTCCTAACCAG+AGG 0.690578 1.3:+46267383 MS.gene029818:CDS
CGGGAGTTCTCACTACGAGG+GGG 0.698174 1.3:-46268326 None:intergenic
GAACGATCACCACCAAAACG+AGG 0.713335 1.3:-46268362 None:intergenic
CTGGTTAGGAGAGTAACTAG+GGG 0.742322 1.3:-46267380 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTCATAATTAAAAAAATT+AGG - chr1.3:46268727-46268746 None:intergenic 10.0%
!! TGATAATTTATTATAAAGTT+TGG + chr1.3:46267565-46267584 MS.gene029818:intron 10.0%
!!! ATATGTATTTTATTAAAATG+TGG + chr1.3:46268106-46268125 MS.gene029818:intron 10.0%
!!! CTAATTTTTTTAATTATGAA+AGG + chr1.3:46268725-46268744 MS.gene029818:intron 10.0%
!! GATTAATTTATTACAAAGTT+TGG + chr1.3:46267638-46267657 MS.gene029818:intron 15.0%
!! TTTAATAGTTACAAGTAATT+AGG + chr1.3:46268068-46268087 MS.gene029818:intron 15.0%
!!! ATTTTATTAAAATGTGGATA+AGG + chr1.3:46268112-46268131 MS.gene029818:intron 15.0%
!!! GTGAATTTAATGTTAAATTT+TGG + chr1.3:46267713-46267732 MS.gene029818:intron 15.0%
!!! TTTTATTAAAATGTGGATAA+GGG + chr1.3:46268113-46268132 MS.gene029818:intron 15.0%
!! CTTAGATGTTATAAACAAAA+TGG - chr1.3:46268238-46268257 None:intergenic 20.0%
!! TATATTATGTATTTAACCAC+TGG + chr1.3:46268833-46268852 MS.gene029818:intron 20.0%
!!! AAACAATTTTGGAAATTTAC+AGG + chr1.3:46268259-46268278 MS.gene029818:intron 20.0%
!!! CATTTTGTTTATAACATCTA+AGG + chr1.3:46268236-46268255 MS.gene029818:intron 20.0%
!!! TTATAAAGTTTGGCATTTTA+TGG + chr1.3:46267575-46267594 MS.gene029818:intron 20.0%
! AAAATTGAGTATGGTAATTG+GGG + chr1.3:46267928-46267947 MS.gene029818:intron 25.0%
! AGATTATGAGTTAGAATTCA+GGG + chr1.3:46268699-46268718 MS.gene029818:intron 25.0%
! AGTTGTTTGAAAATTGAGTA+TGG + chr1.3:46267919-46267938 MS.gene029818:intron 25.0%
! GAAAATTGAGTATGGTAATT+GGG + chr1.3:46267927-46267946 MS.gene029818:intron 25.0%
! TAAAATACATATACCCCTAT+AGG - chr1.3:46268098-46268117 None:intergenic 25.0%
! TAGATTATGAGTTAGAATTC+AGG + chr1.3:46268698-46268717 MS.gene029818:intron 25.0%
! TGAAAATTGAGTATGGTAAT+TGG + chr1.3:46267926-46267945 MS.gene029818:intron 25.0%
!! AACATCTAAGGAAACAATTT+TGG + chr1.3:46268248-46268267 MS.gene029818:intron 25.0%
!! ACCTTTTGGATGAAAAATAA+TGG + chr1.3:46267683-46267702 MS.gene029818:intron 25.0%
!! CCAATAATTTTCATCCAAAA+GGG - chr1.3:46267613-46267632 None:intergenic 25.0%
!! CCTTTTGGATGAAAAATAAT+GGG + chr1.3:46267684-46267703 MS.gene029818:intron 25.0%
!! CCTTTTGGATGAAAATTATT+GGG + chr1.3:46267611-46267630 MS.gene029818:intron 25.0%
!! GTTTAATTAGATACCCTTTT+GGG + chr1.3:46267524-46267543 MS.gene029818:intron 25.0%
!! TGTTTAATTAGATACCCTTT+TGG + chr1.3:46267523-46267542 MS.gene029818:intron 25.0%
!! TTGGCATTTTATGGTTTAAT+TGG + chr1.3:46267584-46267603 MS.gene029818:intron 25.0%
!! TTGTTTAATTGAGTACCTTT+TGG + chr1.3:46267669-46267688 MS.gene029818:intron 25.0%
!!! ATCATCTGGTTTTTTTTTGT+AGG + chr1.3:46268864-46268883 MS.gene029818:intron 25.0%
!!! TTTGGAATTTGTGTTTTTTC+AGG + chr1.3:46267731-46267750 MS.gene029818:intron 25.0%
!!! TTTTTTTTGTAGGACTTGAA+TGG + chr1.3:46268874-46268893 MS.gene029818:intron 25.0%
AAGTAATTAGGTACTCCTAT+AGG + chr1.3:46268080-46268099 MS.gene029818:intron 30.0%
ACCTATGTTACAAATGACTT+TGG + chr1.3:46268212-46268231 MS.gene029818:intron 30.0%
AGTAATTAGGTACTCCTATA+GGG + chr1.3:46268081-46268100 MS.gene029818:intron 30.0%
GTAACTCTTATATCTGAGTT+TGG + chr1.3:46268173-46268192 MS.gene029818:intron 30.0%
GTGATTTATGATAAGACTAC+TGG + chr1.3:46267753-46267772 MS.gene029818:CDS 30.0%
! AAGGAAAAGGGTTTGAAATT+AGG - chr1.3:46267247-46267266 None:intergenic 30.0%
! AGGAAAAGGGTTTGAAATTA+GGG - chr1.3:46267246-46267265 None:intergenic 30.0%
! CCAATAATTTTCACCCAAAA+GGG - chr1.3:46267540-46267559 None:intergenic 30.0%
! CCCAATAATTTTCATCCAAA+AGG - chr1.3:46267614-46267633 None:intergenic 30.0%
! CCCTTTTGGATGAAAATTAT+TGG + chr1.3:46267610-46267629 MS.gene029818:intron 30.0%
!! CAATTTTGGAAATTTACAGG+TGG + chr1.3:46268262-46268281 MS.gene029818:intron 30.0%
!! CCCATTATTTTTCATCCAAA+AGG - chr1.3:46267687-46267706 None:intergenic 30.0%
!! CCTTTTGGGTGAAAATTATT+GGG + chr1.3:46267538-46267557 MS.gene029818:intron 30.0%
!! GATGAAAAATAATGGGTTTG+TGG + chr1.3:46267691-46267710 MS.gene029818:intron 30.0%
AACACGAGAAATGAAACGAT+GGG - chr1.3:46267305-46267324 None:intergenic 35.0%
AAGCAAAGGTAATCTATGAC+AGG + chr1.3:46268507-46268526 MS.gene029818:CDS 35.0%
ACAATGAGTAGATCTGGATA+AGG - chr1.3:46268155-46268174 None:intergenic 35.0%
ACCTGCATCATATTGAATAG+AGG - chr1.3:46268638-46268657 None:intergenic 35.0%
AGAAACAGAGGAAAAGGAAA+AGG - chr1.3:46267260-46267279 None:intergenic 35.0%
AGAGTTACAATGAGTAGATC+TGG - chr1.3:46268161-46268180 None:intergenic 35.0%
AGCAAAGGTAATCTATGACA+GGG + chr1.3:46268508-46268527 MS.gene029818:CDS 35.0%
GAAACAGAGGAAAAGGAAAA+GGG - chr1.3:46267259-46267278 None:intergenic 35.0%
GAAGAAGATACCTTTGATGA+TGG + chr1.3:46267349-46267368 MS.gene029818:CDS 35.0%
GCATCATATTGAATAGAGGA+GGG - chr1.3:46268634-46268653 None:intergenic 35.0%
GCCAAAGTCATTTGTAACAT+AGG - chr1.3:46268216-46268235 None:intergenic 35.0%
GTAATTAGGTACTCCTATAG+GGG + chr1.3:46268082-46268101 MS.gene029818:intron 35.0%
TCAACTCTTCATGTGTGAAT+TGG + chr1.3:46268797-46268816 MS.gene029818:intron 35.0%
TCCTCTATTCAATATGATGC+AGG + chr1.3:46268634-46268653 MS.gene029818:intron 35.0%
TGCATCATATTGAATAGAGG+AGG - chr1.3:46268635-46268654 None:intergenic 35.0%
TGTGAGCAAATTGTGTACTA+TGG - chr1.3:46268018-46268037 None:intergenic 35.0%
TGTTTCTTCTGAATTTGACC+AGG + chr1.3:46267327-46267346 MS.gene029818:CDS 35.0%
! CCCAATAATTTTCACCCAAA+AGG - chr1.3:46267541-46267560 None:intergenic 35.0%
! GGTTTAATTGGATACCCTTT+TGG + chr1.3:46267596-46267615 MS.gene029818:intron 35.0%
! TGTGGATAAGGGTATAACTA+TGG + chr1.3:46268124-46268143 MS.gene029818:intron 35.0%
!! CCCTTTTGGGTGAAAATTAT+TGG + chr1.3:46267537-46267556 MS.gene029818:intron 35.0%
!! CTGAGATTTTTGAAAACGCT+GGG + chr1.3:46267452-46267471 MS.gene029818:CDS 35.0%
!! TTTTGGAAATTTACAGGTGG+TGG + chr1.3:46268265-46268284 MS.gene029818:intron 35.0%
AAACAATGACTCAAGTGCCA+AGG - chr1.3:46268465-46268484 None:intergenic 40.0%
AAACGCTGGGAATGTTGAAA+TGG + chr1.3:46267465-46267484 MS.gene029818:CDS 40.0%
AACGAGGATTCTCACCAAAA+CGG - chr1.3:46268349-46268368 None:intergenic 40.0%
AAGTACTAAGGATGTTGCAG+AGG - chr1.3:46267161-46267180 None:intergenic 40.0%
ACGAAGAGAAACAGAGGAAA+AGG - chr1.3:46267266-46267285 None:intergenic 40.0%
AGAGAATTGAGAGTGAATGC+TGG + chr1.3:46268293-46268312 MS.gene029818:CDS 40.0%
AGTGGAAGATCTAGAGGATT+TGG + chr1.3:46268533-46268552 MS.gene029818:CDS 40.0%
ATAAGACTACTGGAAGAAGC+AGG + chr1.3:46267763-46267782 MS.gene029818:CDS 40.0%
CAACACGAGAAATGAAACGA+TGG - chr1.3:46267306-46267325 None:intergenic 40.0%
CAAGGTTACCAACATGAACA+CGG - chr1.3:46268427-46268446 None:intergenic 40.0%
CGATGGGAAATAGACAAAGA+TGG - chr1.3:46267289-46267308 None:intergenic 40.0%
GACGCAAAACTACAACTCAA+TGG - chr1.3:46268776-46268795 None:intergenic 40.0%
GAGTGAAGAGAAACATTGAG+GGG - chr1.3:46267206-46267225 None:intergenic 40.0%
GGAGTGAAGAGAAACATTGA+GGG - chr1.3:46267207-46267226 None:intergenic 40.0%
GGTATCATCACCATCATCAA+AGG - chr1.3:46267362-46267381 None:intergenic 40.0%
GTAATCTATGACAGGGAAAG+TGG + chr1.3:46268515-46268534 MS.gene029818:CDS 40.0%
TAAGACTACTGGAAGAAGCA+GGG + chr1.3:46267764-46267783 MS.gene029818:CDS 40.0%
TATGAAAGGGTTAAGTCCCT+TGG + chr1.3:46268739-46268758 MS.gene029818:intron 40.0%
TCTGGTTAGGAGAGTAACTA+GGG - chr1.3:46267384-46267403 None:intergenic 40.0%
TGGGAATGTTGAAATGGTTG+AGG + chr1.3:46267471-46267490 MS.gene029818:CDS 40.0%
TGTTACTATGTCTTCTGCTG+CGG + chr1.3:46267797-46267816 MS.gene029818:CDS 40.0%
TTGGCACTTGAGTCATTGTT+TGG + chr1.3:46268464-46268483 MS.gene029818:CDS 40.0%
! AGGGTTTGAAATTAGGGTTG+AGG - chr1.3:46267240-46267259 None:intergenic 40.0%
! AGTGCTATTCGAACCTTAGA+TGG + chr1.3:46268590-46268609 MS.gene029818:CDS 40.0%
! ATTGTTTGGTGAACAAGGAC+AGG + chr1.3:46268478-46268497 MS.gene029818:CDS 40.0%
! GAAACATTGAGGGGAGTTTT+TGG - chr1.3:46267197-46267216 None:intergenic 40.0%
! GAGTCATTGTTTGGTGAACA+AGG + chr1.3:46268473-46268492 MS.gene029818:CDS 40.0%
! GGGTTTGAAATTAGGGTTGA+GGG - chr1.3:46267239-46267258 None:intergenic 40.0%
! TTTGGTGAGAATCCTCGTTT+TGG + chr1.3:46268350-46268369 MS.gene029818:CDS 40.0%
!! AATGGCTTTGAATCCTCCAA+GGG - chr1.3:46268758-46268777 None:intergenic 40.0%
!! CATCAAAGGTATCTTCTTCC+TGG - chr1.3:46267348-46267367 None:intergenic 40.0%
!! GAAGAGTGATGGAAGTACTA+AGG - chr1.3:46267173-46267192 None:intergenic 40.0%
!! GCTGAGATTTTTGAAAACGC+TGG + chr1.3:46267451-46267470 MS.gene029818:CDS 40.0%
!! TCATGTTGGTAACCTTGCTT+GGG + chr1.3:46268430-46268449 MS.gene029818:CDS 40.0%
!! TTCATGTTGGTAACCTTGCT+TGG + chr1.3:46268429-46268448 MS.gene029818:CDS 40.0%
!!! GAGTTTTTGGTGAAGAGTGA+TGG - chr1.3:46267184-46267203 None:intergenic 40.0%
AAGACTACTGGAAGAAGCAG+GGG + chr1.3:46267765-46267784 MS.gene029818:CDS 45.0%
ACGAGGATTCTCACCAAAAC+GGG - chr1.3:46268348-46268367 None:intergenic 45.0%
AGATGGACGAAGAGAAACAG+AGG - chr1.3:46267272-46267291 None:intergenic 45.0%
AGGGAAAGTGGAAGATCTAG+AGG + chr1.3:46268527-46268546 MS.gene029818:CDS 45.0%
AGTGACAACCGTGTTCATGT+TGG + chr1.3:46268416-46268435 MS.gene029818:CDS 45.0%
CACTGTCAACACTGAAAGGA+AGG - chr1.3:46267423-46267442 None:intergenic 45.0%
CCAACAAACAACCTCTGGTT+AGG - chr1.3:46267397-46267416 None:intergenic 45.0%
CCTAACCAGAGGTTGTTTGT+TGG + chr1.3:46267394-46267413 MS.gene029818:CDS 45.0%
CTAGTTACTCTCCTAACCAG+AGG + chr1.3:46267383-46267402 MS.gene029818:CDS 45.0%
CTATCTGAAGAACCACCTCT+TGG - chr1.3:46268398-46268417 None:intergenic 45.0%
CTCTGGTTAGGAGAGTAACT+AGG - chr1.3:46267385-46267404 None:intergenic 45.0%
CTGGTTAGGAGAGTAACTAG+GGG - chr1.3:46267383-46267402 None:intergenic 45.0%
GGGAGTGAAGAGAAACATTG+AGG - chr1.3:46267208-46267227 None:intergenic 45.0%
GGTTACCAACAAACAACCTC+TGG - chr1.3:46267402-46267421 None:intergenic 45.0%
TACTATCAGCTGGTGAGACT+CGG - chr1.3:46268909-46268928 None:intergenic 45.0%
TAGGGTTGAGGGAAAGAGAA+GGG - chr1.3:46267228-46267247 None:intergenic 45.0%
TATTCGAACCTTAGATGGCG+CGG + chr1.3:46268595-46268614 MS.gene029818:CDS 45.0%
TTAGGGTTGAGGGAAAGAGA+AGG - chr1.3:46267229-46267248 None:intergenic 45.0%
! TGAGCACTGTCAACACTGAA+AGG - chr1.3:46267427-46267446 None:intergenic 45.0%
! TGGTGAACAAGGACAGGTTT+TGG + chr1.3:46268484-46268503 MS.gene029818:CDS 45.0%
!! CAATGGCTTTGAATCCTCCA+AGG - chr1.3:46268759-46268778 None:intergenic 45.0%
!! CATGTTGGTAACCTTGCTTG+GGG + chr1.3:46268431-46268450 MS.gene029818:CDS 45.0%
!! GGAAATTTACAGGTGGTGGA+TGG + chr1.3:46268269-46268288 MS.gene029818:intron 45.0%
!! TTTGGTGGTGATCGTTCTAG+AGG + chr1.3:46268368-46268387 MS.gene029818:CDS 45.0%
!!! AGGACAGGTTTTGGAAGCAA+AGG + chr1.3:46268493-46268512 MS.gene029818:CDS 45.0%
!! TTTCATAATTAAAAAAATTA+GGG - chr1.3:46268726-46268745 None:intergenic 5.0%
!!! TAATTTTTTTAATTATGAAA+GGG + chr1.3:46268726-46268745 MS.gene029818:intron 5.0%
AAACGGGAGTTCTCACTACG+AGG - chr1.3:46268332-46268351 None:intergenic 50.0%
AACGGGAGTTCTCACTACGA+GGG - chr1.3:46268331-46268350 None:intergenic 50.0%
ACTGGAAGAAGCAGGGGATT+TGG + chr1.3:46267771-46267790 MS.gene029818:CDS 50.0%
CACTGGAGTCTTGCATCATC+TGG + chr1.3:46268850-46268869 MS.gene029818:intron 50.0%
CAGATGATGCAAGACTCCAG+TGG - chr1.3:46268852-46268871 None:intergenic 50.0%
CATGTTTACCGCGCCATCTA+AGG - chr1.3:46268606-46268625 None:intergenic 50.0%
CGCTTTGGTCTACTATCAGC+TGG - chr1.3:46268919-46268938 None:intergenic 50.0%
GAAAGGGTTAAGTCCCTTGG+AGG + chr1.3:46268742-46268761 MS.gene029818:intron 50.0%
GAACGATCACCACCAAAACG+AGG - chr1.3:46268365-46268384 None:intergenic 50.0%
TCTGAAGAACCACCTCTTGG+AGG - chr1.3:46268395-46268414 None:intergenic 50.0%
TTCTGCTGCGGAAGTTGAAG+CGG + chr1.3:46267809-46267828 MS.gene029818:CDS 50.0%
! CGTAGTGAGAACTCCCGTTT+TGG + chr1.3:46268332-46268351 MS.gene029818:CDS 50.0%
! GGTGAGAATCCTCGTTTTGG+TGG + chr1.3:46268353-46268372 MS.gene029818:CDS 50.0%
!! GACTTTCAGTAGCGCTGATG+AGG + chr1.3:46268562-46268581 MS.gene029818:CDS 50.0%
ACGGGAGTTCTCACTACGAG+GGG - chr1.3:46268330-46268349 None:intergenic 55.0%
AGGTGTCAACACCCCAAGCA+AGG - chr1.3:46268445-46268464 None:intergenic 55.0%
TCTAGAGGTCCTCCAAGAGG+TGG + chr1.3:46268383-46268402 MS.gene029818:CDS 55.0%
!! CGTTCTAGAGGTCCTCCAAG+AGG + chr1.3:46268380-46268399 MS.gene029818:CDS 55.0%
!! TGCTTGGGGTGTTGACACCT+TGG + chr1.3:46268445-46268464 MS.gene029818:CDS 55.0%
CGGGAGTTCTCACTACGAGG+GGG - chr1.3:46268329-46268348 None:intergenic 60.0%
GAGTTCTCACTACGAGGGGG+AGG - chr1.3:46268326-46268345 None:intergenic 60.0%
GCGGCTGCTCAGCAGTTGAA+TGG + chr1.3:46267828-46267847 MS.gene029818:CDS 60.0%
TTCTCACTACGAGGGGGAGG+TGG - chr1.3:46268323-46268342 None:intergenic 60.0%
TCACTACGAGGGGGAGGTGG+TGG - chr1.3:46268320-46268339 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 46267151 46268948 46267151 ID=MS.gene029818
chr1.3 mRNA 46267151 46268948 46267151 ID=MS.gene029818.t1;Parent=MS.gene029818
chr1.3 exon 46267151 46267492 46267151 ID=MS.gene029818.t1.exon1;Parent=MS.gene029818.t1
chr1.3 CDS 46267151 46267492 46267151 ID=cds.MS.gene029818.t1;Parent=MS.gene029818.t1
chr1.3 exon 46267753 46267854 46267753 ID=MS.gene029818.t1.exon2;Parent=MS.gene029818.t1
chr1.3 CDS 46267753 46267854 46267753 ID=cds.MS.gene029818.t1;Parent=MS.gene029818.t1
chr1.3 exon 46268281 46268616 46268281 ID=MS.gene029818.t1.exon3;Parent=MS.gene029818.t1
chr1.3 CDS 46268281 46268616 46268281 ID=cds.MS.gene029818.t1;Parent=MS.gene029818.t1
chr1.3 exon 46268886 46268948 46268886 ID=MS.gene029818.t1.exon4;Parent=MS.gene029818.t1
chr1.3 CDS 46268886 46268948 46268886 ID=cds.MS.gene029818.t1;Parent=MS.gene029818.t1
Gene Sequence

>MS.gene029818

ATGTCTTCCTCTGCAACATCCTTAGTACTTCCATCACTCTTCACCAAAAACTCCCCTCAATGTTTCTCTTCACTCCCTTCTCTTTCCCTCAACCCTAATTTCAAACCCTTTTCCTTTTCCTCTGTTTCTCTTCGTCCATCTTTGTCTATTTCCCATCGTTTCATTTCTCGTGTTGCTGTTTCTTCTGAATTTGACCAGGAAGAAGATACCTTTGATGATGGTGATGATACCCCTAGTTACTCTCCTAACCAGAGGTTGTTTGTTGGTAACCTTCCTTTCAGTGTTGACAGTGCTCAACTTGCTGAGATTTTTGAAAACGCTGGGAATGTTGAAATGGTTGAGGTAATTTCTTACAAAGTTTTGTTTTTTTATTGTTTAATTAGATACCCTTTTGGGTGAAAATTATTGGGTTTGTGATAATTTATTATAAAGTTTGGCATTTTATGGTTTAATTGGATACCCTTTTGGATGAAAATTATTGGGTTAAGATTAATTTATTACAAAGTTTGGTTATTTTTTTGTTTAATTGAGTACCTTTTGGATGAAAAATAATGGGTTTGTGGTGAATTTAATGTTAAATTTTGGAATTTGTGTTTTTTCAGGTGATTTATGATAAGACTACTGGAAGAAGCAGGGGATTTGGTTTTGTTACTATGTCTTCTGCTGCGGAAGTTGAAGCGGCTGCTCAGCAGTTGAATGGCTATGTGAGTTTATTTTTCATCATTTGTTTGATAATTATTCAGATGTTTTGTTCTGAGAATTTTTGTTAGTTGTTTGAAAATTGAGTATGGTAATTGGGGTGTGTGTGTGTGTGTGTATAAGTAATTAAATTCAATGTTATTCTGTATGAATGTGACTGCAGTGCCATAGTACACAATTTGCTCACACAAACATGTTTTAATTGTGTATTGATGAATTTTAATAGTTACAAGTAATTAGGTACTCCTATAGGGGTATATGTATTTTATTAAAATGTGGATAAGGGTATAACTATGGTAGTACCTTATCCAGATCTACTCATTGTAACTCTTATATCTGAGTTTGGATGATGTTAATTTTTTACCTATGTTACAAATGACTTTGGCCATTTTGTTTATAACATCTAAGGAAACAATTTTGGAAATTTACAGGTGGTGGATGGAAGAGAATTGAGAGTGAATGCTGGACCACCACCTCCCCCTCGTAGTGAGAACTCCCGTTTTGGTGAGAATCCTCGTTTTGGTGGTGATCGTTCTAGAGGTCCTCCAAGAGGTGGTTCTTCAGATAGTGACAACCGTGTTCATGTTGGTAACCTTGCTTGGGGTGTTGACACCTTGGCACTTGAGTCATTGTTTGGTGAACAAGGACAGGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCTAGAGGATTTGGCTTTGTGACTTTCAGTAGCGCTGATGAGGTCAACAGTGCTATTCGAACCTTAGATGGCGCGGTAAACATGCAAATCCCTCCTCTATTCAATATGATGCAGGTCTTTTTAATTTCATAATTCAAATTAGATTTATGTTACTTTTAGATTATGAGTTAGAATTCAGGGACCCTAATTTTTTTAATTATGAAAGGGTTAAGTCCCTTGGAGGATTCAAAGCCATTGAGTTGTAGTTTTGCGTCTTCAACTCTTCATGTGTGAATTGGTGTTGTGTAAAGCTATATTATGTATTTAACCACTGGAGTCTTGCATCATCTGGTTTTTTTTTGTAGGACTTGAATGGCAGAGCTATCCGAGTCTCACCAGCTGATAGTAGACCAAAGCGTCAATTTTGA
Protein sequence

>MS.gene029818.t1

MSSSATSLVLPSLFTKNSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGNVEMVEVIYDKTTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRSRGPPRGGSSDSDNRVHVGNLAWGVDTLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVNSAIRTLDGADLNGRAIRVSPADSRPKRQF