Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066507.t1 | XP_003629130.1 | 99 | 291 | 2 | 1 | 1 | 291 | 1 | 290 | 3.40E-162 | 580.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066507.t1 | Q5E9J1 | 34.5 | 203 | 106 | 4 | 86 | 283 | 12 | 192 | 1.0e-26 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066507.t1 | G7L9D8 | 99.0 | 291 | 2 | 1 | 1 | 291 | 1 | 290 | 2.4e-162 | 580.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24612 | MS.gene066507 | PPI |
| MS.gene033319 | MS.gene066507 | PPI |
| MS.gene066507 | MS.gene75015 | PPI |
| MS.gene066507 | MS.gene54953 | PPI |
| MS.gene066507 | MS.gene059960 | PPI |
| MS.gene065379 | MS.gene066507 | PPI |
| MS.gene066507 | MS.gene31434 | PPI |
| MS.gene033701 | MS.gene066507 | PPI |
| MS.gene066507 | MS.gene48301 | PPI |
| MS.gene055908 | MS.gene066507 | PPI |
| MS.gene028868 | MS.gene066507 | PPI |
| MS.gene066507 | MS.gene055778 | PPI |
| MS.gene066507 | MS.gene029818 | PPI |
| MS.gene024268 | MS.gene066507 | PPI |
| MS.gene066507 | MS.gene011357 | PPI |
| MS.gene066507 | MS.gene043455 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066507.t1 | MTR_8g073580 | 98.969 | 291 | 2 | 1 | 1 | 291 | 1 | 290 | 0.0 | 583 |
| MS.gene066507.t1 | MTR_8g073580 | 98.707 | 232 | 2 | 1 | 60 | 291 | 13 | 243 | 4.70e-168 | 465 |
| MS.gene066507.t1 | MTR_3g061590 | 51.550 | 258 | 108 | 5 | 40 | 290 | 12 | 259 | 2.31e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066507.t1 | AT5G66010 | 69.373 | 271 | 64 | 5 | 24 | 291 | 1 | 255 | 5.04e-122 | 349 |
| MS.gene066507.t1 | AT5G66010 | 70.186 | 161 | 42 | 2 | 134 | 291 | 1 | 158 | 2.56e-70 | 214 |
| MS.gene066507.t1 | AT3G20890 | 42.088 | 297 | 123 | 5 | 34 | 290 | 5 | 292 | 5.10e-64 | 203 |
| MS.gene066507.t1 | AT3G20890 | 42.365 | 203 | 87 | 3 | 118 | 290 | 27 | 229 | 7.39e-46 | 154 |
Find 92 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTCTCTTTGCCTCATC+TGG | 0.312683 | 8.2:+30938177 | None:intergenic |
| GAGGCCTTTGTAGTCTTTGC+AGG | 0.327405 | 8.2:-30938561 | MS.gene066507:CDS |
| CCGCTGCTCACTGCGAAGTA+TGG | 0.332843 | 8.2:+30938768 | None:intergenic |
| CTAGCTTCATCTGGTGTAGA+AGG | 0.346506 | 8.2:+30938108 | None:intergenic |
| ACAGGCAGCCATCAACATTA+TGG | 0.353285 | 8.2:-30938744 | MS.gene066507:CDS |
| TCTCCAGTAGCTTTACCATC+TGG | 0.367022 | 8.2:+30938222 | None:intergenic |
| GACCATTGTCGATGTGTTGC+TGG | 0.372175 | 8.2:-30938610 | MS.gene066507:CDS |
| TTCTTTATCGCTGAACCTCT+TGG | 0.382586 | 8.2:+30938368 | None:intergenic |
| GATTATTACAACGCTGTTGC+TGG | 0.382963 | 8.2:-30938453 | MS.gene066507:CDS |
| ATTACAAGCTGATAGAAGAT+AGG | 0.386176 | 8.2:-30938263 | MS.gene066507:CDS |
| TATAAATTGAAGGGCAATGT+TGG | 0.401209 | 8.2:-30938856 | MS.gene066507:intron |
| AAGGGCAATGTTGGGAAGCG+GGG | 0.403199 | 8.2:-30938847 | MS.gene066507:CDS |
| TTCGCAGTGAGCAGCGGAAC+AGG | 0.403956 | 8.2:-30938762 | MS.gene066507:CDS |
| AGGGCAATGTTGGGAAGCGG+GGG | 0.422275 | 8.2:-30938846 | MS.gene066507:CDS |
| TGGAGGGAGGAGGGCTTCCT+TGG | 0.428148 | 8.2:+30938394 | None:intergenic |
| GAAGGGCAATGTTGGGAAGC+GGG | 0.429195 | 8.2:-30938848 | MS.gene066507:intron |
| GGGCTGGAAGCCGCCACCAC+TGG | 0.430641 | 8.2:+30938716 | None:intergenic |
| CGCCCAGATGGTAAAGCTAC+TGG | 0.431576 | 8.2:-30938225 | MS.gene066507:CDS |
| TCAGCATAGGATCGGGAAAA+GGG | 0.437721 | 8.2:+30940006 | None:intergenic |
| GGCAATGTTGGGAAGCGGGG+GGG | 0.440568 | 8.2:-30938844 | MS.gene066507:CDS |
| GTTCAGCGATAAAGAACAAA+TGG | 0.442718 | 8.2:-30938361 | MS.gene066507:CDS |
| TCGGCCCGTCTAGCTTCATC+TGG | 0.450631 | 8.2:+30938099 | None:intergenic |
| TCTATGTCTGTGCAGTTAAA+CGG | 0.457816 | 8.2:+30938657 | None:intergenic |
| CTCCAGTAGCTTTACCATCT+GGG | 0.460963 | 8.2:+30938223 | None:intergenic |
| GAACCATCTACGGTGCTCCC+AGG | 0.461876 | 8.2:-30939978 | MS.gene066507:CDS |
| GGGCAATGTTGGGAAGCGGG+GGG | 0.462515 | 8.2:-30938845 | MS.gene066507:CDS |
| AACCATCTACGGTGCTCCCA+GGG | 0.468320 | 8.2:-30939977 | MS.gene066507:CDS |
| CTTAGACGAACCACAGGAAA+AGG | 0.474614 | 8.2:+30938687 | None:intergenic |
| TATGGATATGCCAGTGGTGG+CGG | 0.478326 | 8.2:-30938726 | MS.gene066507:CDS |
| ATCAGCATAGGATCGGGAAA+AGG | 0.479017 | 8.2:+30940005 | None:intergenic |
| TGGCATATCCATAATGTTGA+TGG | 0.484548 | 8.2:+30938736 | None:intergenic |
| GTTTCGGACGGGTACGAGGT+TGG | 0.490680 | 8.2:-30938822 | MS.gene066507:CDS |
| CTCTTGGACCTGGAGGGAGG+AGG | 0.491713 | 8.2:+30938384 | None:intergenic |
| AGTCTTTGCAGGAGCAATGC+AGG | 0.496210 | 8.2:-30938550 | MS.gene066507:CDS |
| TTCAAGGATAAAATGACCAT+TGG | 0.498109 | 8.2:-30938153 | MS.gene066507:CDS |
| ATAAATTGAAGGGCAATGTT+GGG | 0.502268 | 8.2:-30938855 | MS.gene066507:intron |
| GAACCACAGGAAAAGGAGGA+GGG | 0.503041 | 8.2:+30938694 | None:intergenic |
| CTCAAAGAGACAAAGAATGA+TGG | 0.505532 | 8.2:-30938799 | MS.gene066507:CDS |
| TCTTGGACCTGGAGGGAGGA+GGG | 0.506240 | 8.2:+30938385 | None:intergenic |
| AAGGAAGCCCTCCTCCCTCC+AGG | 0.521764 | 8.2:-30938392 | MS.gene066507:CDS |
| GAACATGGGTCGCAGGTATG+TGG | 0.523453 | 8.2:-30938499 | MS.gene066507:CDS |
| TCCACGATCAGCATAGGATC+GGG | 0.523949 | 8.2:+30939999 | None:intergenic |
| ATAAAATGACCATTGGATCA+AGG | 0.525711 | 8.2:-30938146 | MS.gene066507:CDS |
| ATCGCTGAACCTCTTGGACC+TGG | 0.527472 | 8.2:+30938374 | None:intergenic |
| ATCGACAGAACATGGGTCGC+AGG | 0.528560 | 8.2:-30938506 | MS.gene066507:CDS |
| GGCAAAGAGAGCAATGTTCA+AGG | 0.531124 | 8.2:-30938169 | MS.gene066507:CDS |
| GCTCACTGCGAAGTATGGAT+TGG | 0.533368 | 8.2:+30938773 | None:intergenic |
| GCTGATCGTGGAACCATCTA+CGG | 0.535075 | 8.2:-30939988 | MS.gene066507:CDS |
| TGAAGGGCAATGTTGGGAAG+CGG | 0.544138 | 8.2:-30938849 | MS.gene066507:intron |
| TACACCAGATGAAGCTAGAC+GGG | 0.546583 | 8.2:-30938103 | MS.gene066507:CDS |
| CACATTGCATGTCGCCCAGA+TGG | 0.547640 | 8.2:-30938237 | MS.gene066507:CDS |
| TCCGCGCATCTTCAATATCT+CGG | 0.549479 | 8.2:+30938332 | None:intergenic |
| CGAACCACAGGAAAAGGAGG+AGG | 0.551442 | 8.2:+30938693 | None:intergenic |
| TCCCGATCCTATGCTGATCG+TGG | 0.553294 | 8.2:-30940000 | MS.gene066507:CDS |
| GACCATTGGATCAAGGTATG+TGG | 0.553651 | 8.2:-30938139 | MS.gene066507:CDS |
| TTTCCTGTGGTTCGTCTAAG+GGG | 0.553773 | 8.2:-30938684 | MS.gene066507:CDS |
| ACAGAGAGATCGACAGAACA+TGG | 0.556371 | 8.2:-30938514 | MS.gene066507:CDS |
| TTACAAGCTGATAGAAGATA+GGG | 0.560052 | 8.2:-30938262 | MS.gene066507:CDS |
| TTCCACGATCAGCATAGGAT+CGG | 0.562183 | 8.2:+30939998 | None:intergenic |
| CAGCATAGGATCGGGAAAAG+GGG | 0.577748 | 8.2:+30940007 | None:intergenic |
| AGAGTTTGTTTCGCCAGATG+AGG | 0.577899 | 8.2:-30938190 | MS.gene066507:CDS |
| TTACTGCCTTGATCTTGACT+CGG | 0.578354 | 8.2:+30938080 | None:intergenic |
| GATGGTTCCACGATCAGCAT+AGG | 0.588268 | 8.2:+30939993 | None:intergenic |
| CTCCTCCCTCCAGGTCCAAG+AGG | 0.588640 | 8.2:-30938383 | MS.gene066507:CDS |
| TTCCTGTGGTTCGTCTAAGG+GGG | 0.588785 | 8.2:-30938683 | MS.gene066507:CDS |
| AGTCAAGATCAAGGCAGTAA+TGG | 0.589761 | 8.2:-30938077 | None:intergenic |
| TTCCACATACCTTGATCCAA+TGG | 0.592618 | 8.2:+30938137 | None:intergenic |
| ACCACAGGAAAAGGAGGAGG+GGG | 0.594356 | 8.2:+30938696 | None:intergenic |
| TAGCTTCATCTGGTGTAGAA+GGG | 0.594893 | 8.2:+30938109 | None:intergenic |
| AACCTCTTGGACCTGGAGGG+AGG | 0.600460 | 8.2:+30938381 | None:intergenic |
| AGCATAGGATCGGGAAAAGG+GGG | 0.603797 | 8.2:+30940008 | None:intergenic |
| GACGGGCCGAGTCAAGATCA+AGG | 0.605621 | 8.2:-30938086 | MS.gene066507:CDS |
| CTACACCAGATGAAGCTAGA+CGG | 0.606049 | 8.2:-30938104 | MS.gene066507:CDS |
| AGCGATGGAGGATAACGATA+CGG | 0.606734 | 8.2:+30940036 | None:intergenic |
| TGCTGGTCAACAAGAGTGGA+CGG | 0.607891 | 8.2:-30938593 | MS.gene066507:CDS |
| CTGAACCTCTTGGACCTGGA+GGG | 0.609766 | 8.2:+30938378 | None:intergenic |
| AACCACAGGAAAAGGAGGAG+GGG | 0.612802 | 8.2:+30938695 | None:intergenic |
| CCATACTTCGCAGTGAGCAG+CGG | 0.625249 | 8.2:-30938768 | MS.gene066507:CDS |
| GCTGAACCTCTTGGACCTGG+AGG | 0.636647 | 8.2:+30938377 | None:intergenic |
| GTGTTGCTGGTCAACAAGAG+TGG | 0.640898 | 8.2:-30938597 | MS.gene066507:CDS |
| CATTATGGATATGCCAGTGG+TGG | 0.643164 | 8.2:-30938729 | MS.gene066507:CDS |
| ACCATCTACGGTGCTCCCAG+GGG | 0.643261 | 8.2:-30939976 | MS.gene066507:CDS |
| GACCAGCAACACATCGACAA+TGG | 0.645427 | 8.2:+30938608 | None:intergenic |
| AGACGAACCACAGGAAAAGG+AGG | 0.657588 | 8.2:+30938690 | None:intergenic |
| CAACATTATGGATATGCCAG+TGG | 0.667464 | 8.2:-30938732 | MS.gene066507:CDS |
| CCATCTACGGTGCTCCCAGG+GGG | 0.668549 | 8.2:-30939975 | MS.gene066507:intron |
| TGCTCCTGCAAAGACTACAA+AGG | 0.672800 | 8.2:+30938557 | None:intergenic |
| CAGAGAGATCGACAGAACAT+GGG | 0.682980 | 8.2:-30938513 | MS.gene066507:CDS |
| ACCGAGATATTGAAGATGCG+CGG | 0.690033 | 8.2:-30938333 | MS.gene066507:CDS |
| AGATGGTAAAGCTACTGGAG+AGG | 0.691703 | 8.2:-30938220 | MS.gene066507:CDS |
| ATATATGACAACGATTACCA+AGG | 0.709272 | 8.2:-30938411 | MS.gene066507:CDS |
| GCTGGTGAGATCAATTACGA+AGG | 0.716063 | 8.2:-30938435 | MS.gene066507:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATCAAAAAATTTCATA+GGG | - | chr8.2:30938408-30938427 | MS.gene066507:CDS | 10.0% |
| !! | AAATATGATAAAATTTATGA+CGG | - | chr8.2:30939155-30939174 | MS.gene066507:intron | 10.0% |
| !! | TAAATATCAAAAAATTTCAT+AGG | - | chr8.2:30938407-30938426 | MS.gene066507:CDS | 10.0% |
| !!! | AAATTTGAGATTTGATTTAT+TGG | - | chr8.2:30938353-30938372 | MS.gene066507:CDS | 15.0% |
| !!! | AGATTTTGTATTTTCTTTTT+GGG | - | chr8.2:30938218-30938237 | MS.gene066507:CDS | 15.0% |
| !!! | TAGATTTTGTATTTTCTTTT+TGG | - | chr8.2:30938217-30938236 | MS.gene066507:CDS | 15.0% |
| !! | CTTATAACAAAACAATCAAA+AGG | + | chr8.2:30938658-30938677 | None:intergenic | 20.0% |
| !! | GAATTGAAATTAAGTATATC+AGG | - | chr8.2:30939181-30939200 | MS.gene066507:intron | 20.0% |
| !! | TAAGAAAAACAACATCAAAA+AGG | + | chr8.2:30938962-30938981 | None:intergenic | 20.0% |
| !! | TGAAAATATGGAAAATATGT+GGG | - | chr8.2:30938699-30938718 | MS.gene066507:CDS | 20.0% |
| !!! | GATTTTGTATTTTCTTTTTG+GGG | - | chr8.2:30938219-30938238 | MS.gene066507:CDS | 20.0% |
| !!! | TTTCTAAGAAAAGTAATTGA+TGG | - | chr8.2:30939047-30939066 | MS.gene066507:intron | 20.0% |
| !!! | TTTTTTGGGTATAAATTGAA+GGG | - | chr8.2:30939257-30939276 | MS.gene066507:intron | 20.0% |
| !!! | TTTTTTTGGGTATAAATTGA+AGG | - | chr8.2:30939256-30939275 | MS.gene066507:intron | 20.0% |
| ! | AATGAATTGCTGTGAAAATA+TGG | - | chr8.2:30938687-30938706 | MS.gene066507:CDS | 25.0% |
| ! | ATGATAAAATTTATGACGGT+AGG | - | chr8.2:30939159-30939178 | MS.gene066507:intron | 25.0% |
| ! | GTGAAAATATGGAAAATATG+TGG | - | chr8.2:30938698-30938717 | MS.gene066507:CDS | 25.0% |
| ! | TAAGTATATCAGGAATACAT+GGG | - | chr8.2:30939191-30939210 | MS.gene066507:intron | 25.0% |
| ! | TATAAAGAACGAAGAGAAAT+CGG | + | chr8.2:30938199-30938218 | None:intergenic | 25.0% |
| ! | TCAAAAAATTTCATAGGGTT+AGG | - | chr8.2:30938413-30938432 | MS.gene066507:CDS | 25.0% |
| ! | TTAAGTATATCAGGAATACA+TGG | - | chr8.2:30939190-30939209 | MS.gene066507:intron | 25.0% |
| ! | TTTATTAACATGTGTTGAGT+GGG | - | chr8.2:30939226-30939245 | MS.gene066507:intron | 25.0% |
| !! | ACAACTAATAATTTGTGTCT+TGG | - | chr8.2:30939004-30939023 | MS.gene066507:intron | 25.0% |
| !! | TTTAAATGCTGTTACGTTTT+TGG | - | chr8.2:30939123-30939142 | MS.gene066507:intron | 25.0% |
| !!! | TGAGTTGTTTTAGAATTCTT+AGG | - | chr8.2:30938286-30938305 | MS.gene066507:CDS | 25.0% |
| ATAAAATGACCATTGGATCA+AGG | - | chr8.2:30939976-30939995 | MS.gene066507:CDS | 30.0% | |
| ATAAATTGAAGGGCAATGTT+GGG | - | chr8.2:30939267-30939286 | MS.gene066507:intron | 30.0% | |
| ATATATGACAACGATTACCA+AGG | - | chr8.2:30939711-30939730 | MS.gene066507:intron | 30.0% | |
| ATTACAAGCTGATAGAAGAT+AGG | - | chr8.2:30939859-30939878 | MS.gene066507:intron | 30.0% | |
| CGGAAAAAAGATGAAGTTTA+GGG | + | chr8.2:30938179-30938198 | None:intergenic | 30.0% | |
| CTAAGAAAAGTAATTGATGG+TGG | - | chr8.2:30939050-30939069 | MS.gene066507:intron | 30.0% | |
| GTTTATTAACATGTGTTGAG+TGG | - | chr8.2:30939225-30939244 | MS.gene066507:intron | 30.0% | |
| TATAAATTGAAGGGCAATGT+TGG | - | chr8.2:30939266-30939285 | MS.gene066507:intron | 30.0% | |
| TCGGAAAAAAGATGAAGTTT+AGG | + | chr8.2:30938180-30938199 | None:intergenic | 30.0% | |
| TGAGATTTAGTCACCAAAAA+AGG | + | chr8.2:30939819-30939838 | None:intergenic | 30.0% | |
| TGATATTTAACACGTACGTA+GGG | - | chr8.2:30938627-30938646 | MS.gene066507:CDS | 30.0% | |
| TGGTGCATAAAGTTATAGTT+AGG | - | chr8.2:30938373-30938392 | MS.gene066507:CDS | 30.0% | |
| TTACAAGCTGATAGAAGATA+GGG | - | chr8.2:30939860-30939879 | MS.gene066507:intron | 30.0% | |
| TTATTAACATGTGTTGAGTG+GGG | - | chr8.2:30939227-30939246 | MS.gene066507:intron | 30.0% | |
| TTCAAGGATAAAATGACCAT+TGG | - | chr8.2:30939969-30939988 | MS.gene066507:intron | 30.0% | |
| ! | GGTTTGATTTATGTGTGATT+AGG | - | chr8.2:30938240-30938259 | MS.gene066507:CDS | 30.0% |
| ! | TTTTTCTTATGTGCTCTGTT+TGG | - | chr8.2:30938973-30938992 | MS.gene066507:intron | 30.0% |
| !! | GATTAGCTTCTGAAAAATCA+CGG | + | chr8.2:30938553-30938572 | None:intergenic | 30.0% |
| !! | GATTTTTCAGAAGCTAATCA+AGG | - | chr8.2:30938554-30938573 | MS.gene066507:CDS | 30.0% |
| !!! | AGTGGGGGATTTTTTTTTTT+GGG | - | chr8.2:30939243-30939262 | MS.gene066507:intron | 30.0% |
| AAATTTCATAGGGTTAGGCT+AGG | - | chr8.2:30938418-30938437 | MS.gene066507:CDS | 35.0% | |
| AATTTCATAGGGTTAGGCTA+GGG | - | chr8.2:30938419-30938438 | MS.gene066507:CDS | 35.0% | |
| AGGTAGCATTTCCAAAATCA+CGG | - | chr8.2:30938574-30938593 | MS.gene066507:CDS | 35.0% | |
| CATAAACCAATAGTGTACCA+AGG | + | chr8.2:30939081-30939100 | None:intergenic | 35.0% | |
| CTCAAAGAGACAAAGAATGA+TGG | - | chr8.2:30939323-30939342 | MS.gene066507:intron | 35.0% | |
| GTGATATTTAACACGTACGT+AGG | - | chr8.2:30938626-30938645 | MS.gene066507:CDS | 35.0% | |
| GTTCAGCGATAAAGAACAAA+TGG | - | chr8.2:30939761-30939780 | MS.gene066507:intron | 35.0% | |
| TAGGAATCGTATTCGTGTTT+GGG | - | chr8.2:30938259-30938278 | MS.gene066507:CDS | 35.0% | |
| TATTAACATGTGTTGAGTGG+GGG | - | chr8.2:30939228-30939247 | MS.gene066507:intron | 35.0% | |
| TCTATGTCTGTGCAGTTAAA+CGG | + | chr8.2:30939468-30939487 | None:intergenic | 35.0% | |
| TGGCATATCCATAATGTTGA+TGG | + | chr8.2:30939389-30939408 | None:intergenic | 35.0% | |
| TTAGGAATCGTATTCGTGTT+TGG | - | chr8.2:30938258-30938277 | MS.gene066507:CDS | 35.0% | |
| !! | TGGTACACTATTGGTTTATG+TGG | - | chr8.2:30939081-30939100 | MS.gene066507:intron | 35.0% |
| !!! | AGTTTTCAGGTGTAAGAAAC+AGG | - | chr8.2:30939647-30939666 | MS.gene066507:intron | 35.0% |
| !!! | GACATTTTGAAGTTCTTTGC+TGG | - | chr8.2:30939486-30939505 | MS.gene066507:intron | 35.0% |
| !!! | GAGTGGGGGATTTTTTTTTT+TGG | - | chr8.2:30939242-30939261 | MS.gene066507:intron | 35.0% |
| CAACATTATGGATATGCCAG+TGG | - | chr8.2:30939390-30939409 | MS.gene066507:intron | 40.0% | |
| GATTATTACAACGCTGTTGC+TGG | - | chr8.2:30939669-30939688 | MS.gene066507:intron | 40.0% | |
| GTCTATCCTTGGTACACTAT+TGG | - | chr8.2:30939072-30939091 | MS.gene066507:intron | 40.0% | |
| TAGCATTTCCAAAATCACGG+TGG | - | chr8.2:30938577-30938596 | MS.gene066507:CDS | 40.0% | |
| TAGCTTCATCTGGTGTAGAA+GGG | + | chr8.2:30940016-30940035 | None:intergenic | 40.0% | |
| TTACTGCCTTGATCTTGACT+CGG | + | chr8.2:30940045-30940064 | None:intergenic | 40.0% | |
| TTCCACATACCTTGATCCAA+TGG | + | chr8.2:30939988-30940007 | None:intergenic | 40.0% | |
| TTCTTTATCGCTGAACCTCT+TGG | + | chr8.2:30939757-30939776 | None:intergenic | 40.0% | |
| ! | ATCAGGAATACATGGGTTGT+GGG | - | chr8.2:30939198-30939217 | MS.gene066507:intron | 40.0% |
| ! | TATCAGGAATACATGGGTTG+TGG | - | chr8.2:30939197-30939216 | MS.gene066507:intron | 40.0% |
| ! | TCAGTAAACCACCGTGATTT+TGG | + | chr8.2:30938588-30938607 | None:intergenic | 40.0% |
| ! | TTTTCCTGTGGTTCGTCTAA+GGG | - | chr8.2:30939437-30939456 | MS.gene066507:intron | 40.0% |
| !! | AATTGATGGTGGTCTATCCT+TGG | - | chr8.2:30939061-30939080 | MS.gene066507:intron | 40.0% |
| !! | AGCTTTGTTAGTCTGGTGTT+AGG | - | chr8.2:30938885-30938904 | MS.gene066507:intron | 40.0% |
| ACAGAGAGATCGACAGAACA+TGG | - | chr8.2:30939608-30939627 | MS.gene066507:intron | 45.0% | |
| ACAGGCAGCCATCAACATTA+TGG | - | chr8.2:30939378-30939397 | MS.gene066507:intron | 45.0% | |
| ACCAACGACGCACTATATCA+GGG | + | chr8.2:30938496-30938515 | None:intergenic | 45.0% | |
| ACCGAGATATTGAAGATGCG+CGG | - | chr8.2:30939789-30939808 | MS.gene066507:intron | 45.0% | |
| AGATGGTAAAGCTACTGGAG+AGG | - | chr8.2:30939902-30939921 | MS.gene066507:intron | 45.0% | |
| AGCGATGGAGGATAACGATA+CGG | + | chr8.2:30938089-30938108 | None:intergenic | 45.0% | |
| ATAGTGCGTCGTTGGTATCA+CGG | - | chr8.2:30938500-30938519 | MS.gene066507:CDS | 45.0% | |
| ATCAGCATAGGATCGGGAAA+AGG | + | chr8.2:30938120-30938139 | None:intergenic | 45.0% | |
| ATTGCTCTCTTTGCCTCATC+TGG | + | chr8.2:30939948-30939967 | None:intergenic | 45.0% | |
| CAGAGAGATCGACAGAACAT+GGG | - | chr8.2:30939609-30939628 | MS.gene066507:intron | 45.0% | |
| CATTATGGATATGCCAGTGG+TGG | - | chr8.2:30939393-30939412 | MS.gene066507:intron | 45.0% | |
| CCAGACTAACAAAGCTCAGA+AGG | + | chr8.2:30938881-30938900 | None:intergenic | 45.0% | |
| CTACACCAGATGAAGCTAGA+CGG | - | chr8.2:30940018-30940037 | MS.gene066507:CDS | 45.0% | |
| CTAGCTTCATCTGGTGTAGA+AGG | + | chr8.2:30940017-30940036 | None:intergenic | 45.0% | |
| CTTAGACGAACCACAGGAAA+AGG | + | chr8.2:30939438-30939457 | None:intergenic | 45.0% | |
| GACCATTGGATCAAGGTATG+TGG | - | chr8.2:30939983-30940002 | MS.gene066507:CDS | 45.0% | |
| GACGCACTATATCAGGGTAT+AGG | + | chr8.2:30938490-30938509 | None:intergenic | 45.0% | |
| GCTGGTGAGATCAATTACGA+AGG | - | chr8.2:30939687-30939706 | MS.gene066507:intron | 45.0% | |
| GGCAAAGAGAGCAATGTTCA+AGG | - | chr8.2:30939953-30939972 | MS.gene066507:intron | 45.0% | |
| TACACCAGATGAAGCTAGAC+GGG | - | chr8.2:30940019-30940038 | MS.gene066507:CDS | 45.0% | |
| TACCAACGACGCACTATATC+AGG | + | chr8.2:30938497-30938516 | None:intergenic | 45.0% | |
| TCAGCATAGGATCGGGAAAA+GGG | + | chr8.2:30938119-30938138 | None:intergenic | 45.0% | |
| TCCGCGCATCTTCAATATCT+CGG | + | chr8.2:30939793-30939812 | None:intergenic | 45.0% | |
| TGCTCCTGCAAAGACTACAA+AGG | + | chr8.2:30939568-30939587 | None:intergenic | 45.0% | |
| TTCCACGATCAGCATAGGAT+CGG | + | chr8.2:30938127-30938146 | None:intergenic | 45.0% | |
| TTTCCTGTGGTTCGTCTAAG+GGG | - | chr8.2:30939438-30939457 | MS.gene066507:intron | 45.0% | |
| ! | AACAAGAGTGGACGGTTTTC+TGG | - | chr8.2:30939537-30939556 | MS.gene066507:intron | 45.0% |
| ! | AGAGTTTGTTTCGCCAGATG+AGG | - | chr8.2:30939932-30939951 | MS.gene066507:intron | 45.0% |
| ! | CTCCAGTAGCTTTACCATCT+GGG | + | chr8.2:30939902-30939921 | None:intergenic | 45.0% |
| ! | CTTTTCCTGTGGTTCGTCTA+AGG | - | chr8.2:30939436-30939455 | MS.gene066507:intron | 45.0% |
| ! | GAATACATGGGTTGTGGGTT+TGG | - | chr8.2:30939203-30939222 | MS.gene066507:intron | 45.0% |
| ! | GCAGGTATGTGGAAGTTTTC+AGG | - | chr8.2:30939634-30939653 | MS.gene066507:intron | 45.0% |
| ! | TCTCCAGTAGCTTTACCATC+TGG | + | chr8.2:30939903-30939922 | None:intergenic | 45.0% |
| !! | CCTTCTGAGCTTTGTTAGTC+TGG | - | chr8.2:30938878-30938897 | MS.gene066507:intron | 45.0% |
| AACCACAGGAAAAGGAGGAG+GGG | + | chr8.2:30939430-30939449 | None:intergenic | 50.0% | |
| ACCCTGATATAGTGCGTCGT+TGG | - | chr8.2:30938492-30938511 | MS.gene066507:CDS | 50.0% | |
| ACGGTAGCTCACCATGAGTT+CGG | + | chr8.2:30938534-30938553 | None:intergenic | 50.0% | |
| AGACGAACCACAGGAAAAGG+AGG | + | chr8.2:30939435-30939454 | None:intergenic | 50.0% | |
| AGCATAGGATCGGGAAAAGG+GGG | + | chr8.2:30938117-30938136 | None:intergenic | 50.0% | |
| AGTCTTTGCAGGAGCAATGC+AGG | - | chr8.2:30939572-30939591 | MS.gene066507:intron | 50.0% | |
| AGTTTAGGGAACATACCCCC+TGG | + | chr8.2:30938165-30938184 | None:intergenic | 50.0% | |
| CAGCATAGGATCGGGAAAAG+GGG | + | chr8.2:30938118-30938137 | None:intergenic | 50.0% | |
| GAACCACAGGAAAAGGAGGA+GGG | + | chr8.2:30939431-30939450 | None:intergenic | 50.0% | |
| GACCAGCAACACATCGACAA+TGG | + | chr8.2:30939517-30939536 | None:intergenic | 50.0% | |
| GACCATTGTCGATGTGTTGC+TGG | - | chr8.2:30939512-30939531 | MS.gene066507:intron | 50.0% | |
| GAGGCCTTTGTAGTCTTTGC+AGG | - | chr8.2:30939561-30939580 | MS.gene066507:intron | 50.0% | |
| GATGGTTCCACGATCAGCAT+AGG | + | chr8.2:30938132-30938151 | None:intergenic | 50.0% | |
| GCTCACTGCGAAGTATGGAT+TGG | + | chr8.2:30939352-30939371 | None:intergenic | 50.0% | |
| GCTGATCGTGGAACCATCTA+CGG | - | chr8.2:30938134-30938153 | MS.gene066507:CDS | 50.0% | |
| GTGCGATGACATGTGTCACA+TGG | + | chr8.2:30938754-30938773 | None:intergenic | 50.0% | |
| GTTTAGGGAACATACCCCCT+GGG | + | chr8.2:30938164-30938183 | None:intergenic | 50.0% | |
| TATGGATATGCCAGTGGTGG+CGG | - | chr8.2:30939396-30939415 | MS.gene066507:intron | 50.0% | |
| TCCACGATCAGCATAGGATC+GGG | + | chr8.2:30938126-30938145 | None:intergenic | 50.0% | |
| TGAAGGGCAATGTTGGGAAG+CGG | - | chr8.2:30939273-30939292 | MS.gene066507:intron | 50.0% | |
| TGCTGGTCAACAAGAGTGGA+CGG | - | chr8.2:30939529-30939548 | MS.gene066507:intron | 50.0% | |
| TTCCTGTGGTTCGTCTAAGG+GGG | - | chr8.2:30939439-30939458 | MS.gene066507:intron | 50.0% | |
| ! | GTGTTGCTGGTCAACAAGAG+TGG | - | chr8.2:30939525-30939544 | MS.gene066507:intron | 50.0% |
| !!! | GATGCGCGGACTTCCTTTTT+TGG | - | chr8.2:30939803-30939822 | MS.gene066507:intron | 50.0% |
| AACCATCTACGGTGCTCCCA+GGG | - | chr8.2:30938145-30938164 | MS.gene066507:CDS | 55.0% | |
| AAGGGCAATGTTGGGAAGCG+GGG | - | chr8.2:30939275-30939294 | MS.gene066507:intron | 55.0% | |
| ACCACAGGAAAAGGAGGAGG+GGG | + | chr8.2:30939429-30939448 | None:intergenic | 55.0% | |
| ATCGACAGAACATGGGTCGC+AGG | - | chr8.2:30939616-30939635 | MS.gene066507:intron | 55.0% | |
| ATCGCTGAACCTCTTGGACC+TGG | + | chr8.2:30939751-30939770 | None:intergenic | 55.0% | |
| CACATTGCATGTCGCCCAGA+TGG | - | chr8.2:30939885-30939904 | MS.gene066507:intron | 55.0% | |
| CCATACTTCGCAGTGAGCAG+CGG | - | chr8.2:30939354-30939373 | MS.gene066507:intron | 55.0% | |
| CGAACCACAGGAAAAGGAGG+AGG | + | chr8.2:30939432-30939451 | None:intergenic | 55.0% | |
| CGCCCAGATGGTAAAGCTAC+TGG | - | chr8.2:30939897-30939916 | MS.gene066507:intron | 55.0% | |
| CTGAACCTCTTGGACCTGGA+GGG | + | chr8.2:30939747-30939766 | None:intergenic | 55.0% | |
| GAAAAGGGGGAATCGAGCGA+TGG | + | chr8.2:30938104-30938123 | None:intergenic | 55.0% | |
| GAACATGGGTCGCAGGTATG+TGG | - | chr8.2:30939623-30939642 | MS.gene066507:intron | 55.0% | |
| GAAGGGCAATGTTGGGAAGC+GGG | - | chr8.2:30939274-30939293 | MS.gene066507:intron | 55.0% | |
| TCCCGATCCTATGCTGATCG+TGG | - | chr8.2:30938122-30938141 | MS.gene066507:CDS | 55.0% | |
| ! | CGGTTGCTTTGCCGAACTCA+TGG | - | chr8.2:30938520-30938539 | MS.gene066507:CDS | 55.0% |
| !! | GAGTGGACGGTTTTCTGGAG+AGG | - | chr8.2:30939542-30939561 | MS.gene066507:intron | 55.0% |
| AACCTCTTGGACCTGGAGGG+AGG | + | chr8.2:30939744-30939763 | None:intergenic | 60.0% | |
| AAGGGGGAATCGAGCGATGG+AGG | + | chr8.2:30938101-30938120 | None:intergenic | 60.0% | |
| ACCATCTACGGTGCTCCCAG+GGG | - | chr8.2:30938146-30938165 | MS.gene066507:CDS | 60.0% | |
| AGCCCCCTTAGACGAACCAC+AGG | + | chr8.2:30939444-30939463 | None:intergenic | 60.0% | |
| AGGGCAATGTTGGGAAGCGG+GGG | - | chr8.2:30939276-30939295 | MS.gene066507:intron | 60.0% | |
| CCGCTGCTCACTGCGAAGTA+TGG | + | chr8.2:30939357-30939376 | None:intergenic | 60.0% | |
| GAACCATCTACGGTGCTCCC+AGG | - | chr8.2:30938144-30938163 | MS.gene066507:CDS | 60.0% | |
| GACGGGCCGAGTCAAGATCA+AGG | - | chr8.2:30940036-30940055 | MS.gene066507:CDS | 60.0% | |
| GCTGAACCTCTTGGACCTGG+AGG | + | chr8.2:30939748-30939767 | None:intergenic | 60.0% | |
| GTTTCGGACGGGTACGAGGT+TGG | - | chr8.2:30939300-30939319 | MS.gene066507:intron | 60.0% | |
| TCTTGGACCTGGAGGGAGGA+GGG | + | chr8.2:30939740-30939759 | None:intergenic | 60.0% | |
| TTCGCAGTGAGCAGCGGAAC+AGG | - | chr8.2:30939360-30939379 | MS.gene066507:intron | 60.0% | |
| ! | TCGGCCCGTCTAGCTTCATC+TGG | + | chr8.2:30940026-30940045 | None:intergenic | 60.0% |
| AAGGAAGCCCTCCTCCCTCC+AGG | - | chr8.2:30939730-30939749 | MS.gene066507:intron | 65.0% | |
| CAGGAAAAGGAGGAGGGGGC+TGG | + | chr8.2:30939425-30939444 | None:intergenic | 65.0% | |
| CCATCTACGGTGCTCCCAGG+GGG | - | chr8.2:30938147-30938166 | MS.gene066507:CDS | 65.0% | |
| CTCCTCCCTCCAGGTCCAAG+AGG | - | chr8.2:30939739-30939758 | MS.gene066507:intron | 65.0% | |
| CTCTTGGACCTGGAGGGAGG+AGG | + | chr8.2:30939741-30939760 | None:intergenic | 65.0% | |
| GGCAATGTTGGGAAGCGGGG+GGG | - | chr8.2:30939278-30939297 | MS.gene066507:intron | 65.0% | |
| GGGCAATGTTGGGAAGCGGG+GGG | - | chr8.2:30939277-30939296 | MS.gene066507:intron | 65.0% | |
| GTTGGGAAGCGGGGGGGTTT+CGG | - | chr8.2:30939284-30939303 | MS.gene066507:intron | 65.0% | |
| TGGAGGGAGGAGGGCTTCCT+TGG | + | chr8.2:30939731-30939750 | None:intergenic | 65.0% | |
| ! | GCCCCCTCCTCCTTTTCCTG+TGG | - | chr8.2:30939425-30939444 | MS.gene066507:intron | 65.0% |
| GAAGCGGGGGGGTTTCGGAC+GGG | - | chr8.2:30939289-30939308 | MS.gene066507:intron | 70.0% | |
| GGAAGCGGGGGGGTTTCGGA+CGG | - | chr8.2:30939288-30939307 | MS.gene066507:intron | 70.0% | |
| GGGGGTTTCGGACGGGTACG+AGG | - | chr8.2:30939296-30939315 | MS.gene066507:intron | 70.0% | |
| !! | CCCCCTGGGAGCACCGTAGA+TGG | + | chr8.2:30938150-30938169 | None:intergenic | 70.0% |
| GGGCTGGAAGCCGCCACCAC+TGG | + | chr8.2:30939409-30939428 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 30938080 | 30940064 | 30938080 | ID=MS.gene066507 |
| chr8.2 | mRNA | 30938080 | 30940064 | 30938080 | ID=MS.gene066507.t1;Parent=MS.gene066507 |
| chr8.2 | exon | 30939976 | 30940064 | 30939976 | ID=MS.gene066507.t1.exon1;Parent=MS.gene066507.t1 |
| chr8.2 | CDS | 30939976 | 30940064 | 30939976 | ID=cds.MS.gene066507.t1;Parent=MS.gene066507.t1 |
| chr8.2 | exon | 30938080 | 30938866 | 30938080 | ID=MS.gene066507.t1.exon2;Parent=MS.gene066507.t1 |
| chr8.2 | CDS | 30938080 | 30938866 | 30938080 | ID=cds.MS.gene066507.t1;Parent=MS.gene066507.t1 |
| Gene Sequence |
| Protein sequence |
