Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23804.t1 | XP_003629130.1 | 96.6 | 291 | 9 | 1 | 1 | 291 | 1 | 290 | 7.30E-157 | 563.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23804.t1 | Q5E9J1 | 34.5 | 203 | 106 | 4 | 86 | 283 | 12 | 192 | 1.3e-26 | 121.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23804.t1 | G7L9D8 | 96.6 | 291 | 9 | 1 | 1 | 291 | 1 | 290 | 5.2e-157 | 563.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049386 | MS.gene23804 | 0.811973 | 5.35E-51 | -1.69E-46 |
| MS.gene059339 | MS.gene23804 | 0.820808 | 5.64E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48301 | MS.gene23804 | PPI |
| MS.gene23804 | MS.gene75015 | PPI |
| MS.gene028868 | MS.gene23804 | PPI |
| MS.gene033701 | MS.gene23804 | PPI |
| MS.gene059960 | MS.gene23804 | PPI |
| MS.gene31434 | MS.gene23804 | PPI |
| MS.gene23804 | MS.gene055778 | PPI |
| MS.gene029818 | MS.gene23804 | PPI |
| MS.gene055908 | MS.gene23804 | PPI |
| MS.gene043455 | MS.gene23804 | PPI |
| MS.gene24612 | MS.gene23804 | PPI |
| MS.gene23804 | MS.gene011357 | PPI |
| MS.gene033319 | MS.gene23804 | PPI |
| MS.gene024268 | MS.gene23804 | PPI |
| MS.gene54953 | MS.gene23804 | PPI |
| MS.gene065379 | MS.gene23804 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23804.t1 | MTR_8g073580 | 98.969 | 291 | 2 | 1 | 1 | 291 | 1 | 290 | 0.0 | 583 |
| MS.gene23804.t1 | MTR_8g073580 | 99.138 | 232 | 1 | 1 | 60 | 291 | 13 | 243 | 2.20e-168 | 466 |
| MS.gene23804.t1 | MTR_3g061590 | 52.124 | 259 | 105 | 6 | 40 | 290 | 12 | 259 | 5.55e-77 | 235 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23804.t1 | AT5G66010 | 69.742 | 271 | 63 | 5 | 24 | 291 | 1 | 255 | 4.49e-123 | 352 |
| MS.gene23804.t1 | AT5G66010 | 70.186 | 161 | 42 | 2 | 134 | 291 | 1 | 158 | 2.88e-70 | 214 |
| MS.gene23804.t1 | AT3G20890 | 43.986 | 291 | 126 | 6 | 34 | 290 | 5 | 292 | 3.14e-65 | 206 |
| MS.gene23804.t1 | AT3G20890 | 42.365 | 203 | 87 | 3 | 118 | 290 | 27 | 229 | 7.16e-46 | 154 |
Find 95 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTCTCTTTGCCTCATC+TGG | 0.312683 | 8.4:+30892435 | None:intergenic |
| GAGGCCTTTGTAGTCTTTGC+AGG | 0.327405 | 8.4:-30892819 | MS.gene23804:CDS |
| GATGCGTGGACTTCCTTTCT+TGG | 0.329252 | 8.4:-30892577 | MS.gene23804:CDS |
| CCGCTGCTCACTGCGAAGTA+TGG | 0.332843 | 8.4:+30893026 | None:intergenic |
| CTAGCTTCATCTGGTGTAGA+AGG | 0.341720 | 8.4:+30892366 | None:intergenic |
| ATTACAAGCTAATAGAAGAT+AGG | 0.344476 | 8.4:-30892521 | MS.gene23804:CDS |
| TCTCCTGTAGCTTTACCATC+TGG | 0.351272 | 8.4:+30892480 | None:intergenic |
| GACCATTGTCGATGTGTTAC+TGG | 0.356325 | 8.4:-30892868 | MS.gene23804:CDS |
| ACAGGCAGCTATCAACATTA+TGG | 0.356559 | 8.4:-30893002 | MS.gene23804:CDS |
| AACAAGAGTGGACGGTTCTC+TGG | 0.381015 | 8.4:-30892843 | MS.gene23804:CDS |
| TTCTTTATCGCTGAACCTCT+TGG | 0.382586 | 8.4:+30892626 | None:intergenic |
| CTACACCAGATGAAGCTAGA+AGG | 0.392023 | 8.4:-30892362 | MS.gene23804:CDS |
| GATTATTACAATGCTGTTGC+TGG | 0.393585 | 8.4:-30892711 | MS.gene23804:CDS |
| TATAAATTGAAGGGCAATGT+TGG | 0.401209 | 8.4:-30893114 | MS.gene23804:intron |
| GAACCATCTACGGCGCTCCC+AGG | 0.402513 | 8.4:-30894227 | MS.gene23804:CDS |
| AAGGGCAATGTTGGGAAGCG+GGG | 0.403199 | 8.4:-30893105 | MS.gene23804:CDS |
| TTCGCAGTGAGCAGCGGAAC+AGG | 0.403956 | 8.4:-30893020 | MS.gene23804:CDS |
| AGGGCAATGTTGGGAAGCGG+GGG | 0.422275 | 8.4:-30893104 | MS.gene23804:CDS |
| TGGAGGGAGGAGGGCTTCCT+TGG | 0.428148 | 8.4:+30892652 | None:intergenic |
| GAAGGGCAATGTTGGGAAGC+GGG | 0.429195 | 8.4:-30893106 | MS.gene23804:intron |
| TCGGCATAGGATCGGGAAAA+GGG | 0.435628 | 8.4:+30894255 | None:intergenic |
| GGCAATGTTGGGAAGCGGGG+GGG | 0.440568 | 8.4:-30893102 | MS.gene23804:CDS |
| GTTCAGCGATAAAGAACAAA+TGG | 0.442718 | 8.4:-30892619 | MS.gene23804:CDS |
| TCGGCCCTTCTAGCTTCATC+TGG | 0.450631 | 8.4:+30892357 | None:intergenic |
| TCTATGTCTGTGCAGTTAAA+CGG | 0.457816 | 8.4:+30892915 | None:intergenic |
| TATGGATATGCCGGTGGTGG+CGG | 0.459791 | 8.4:-30892984 | MS.gene23804:CDS |
| AACCATCTACGGCGCTCCCA+GGG | 0.461242 | 8.4:-30894226 | MS.gene23804:CDS |
| GGGCAATGTTGGGAAGCGGG+GGG | 0.462515 | 8.4:-30893103 | MS.gene23804:CDS |
| CTCCTGTAGCTTTACCATCT+GGG | 0.464237 | 8.4:+30892481 | None:intergenic |
| TGAGATTTAGTCACCAAGAA+AGG | 0.464772 | 8.4:+30892564 | None:intergenic |
| GGGCTGGAAGCCGCCACCAC+CGG | 0.468374 | 8.4:+30892974 | None:intergenic |
| TCCACGATCGGCATAGGATC+GGG | 0.469403 | 8.4:+30894248 | None:intergenic |
| CGCCCAGATGGTAAAGCTAC+AGG | 0.474461 | 8.4:-30892483 | MS.gene23804:CDS |
| CTTAGACGAACCACAGGAAA+AGG | 0.474614 | 8.4:+30892945 | None:intergenic |
| ATCGGCATAGGATCGGGAAA+AGG | 0.476924 | 8.4:+30894254 | None:intergenic |
| GTTTCGGACGGGTACGAGGT+TGG | 0.490680 | 8.4:-30893080 | MS.gene23804:CDS |
| CTCTTGGACCTGGAGGGAGG+AGG | 0.491713 | 8.4:+30892642 | None:intergenic |
| TCCCGATCCTATGCCGATCG+TGG | 0.495208 | 8.4:-30894249 | MS.gene23804:CDS |
| AGTCTTTGCAGGAGCAATGC+AGG | 0.496210 | 8.4:-30892808 | MS.gene23804:CDS |
| TTCAAGGATAAAATGACCAT+TGG | 0.498109 | 8.4:-30892411 | MS.gene23804:CDS |
| CTCAAAGAGACAAAGAATGA+TGG | 0.499681 | 8.4:-30893057 | MS.gene23804:CDS |
| ATAAATTGAAGGGCAATGTT+GGG | 0.502268 | 8.4:-30893113 | MS.gene23804:intron |
| GAACCACAGGAAAAGGAGGA+GGG | 0.503041 | 8.4:+30892952 | None:intergenic |
| TCTTGGACCTGGAGGGAGGA+GGG | 0.506240 | 8.4:+30892643 | None:intergenic |
| GATGGTTCCACGATCGGCAT+AGG | 0.520832 | 8.4:+30894242 | None:intergenic |
| AAGGAAGCCCTCCTCCCTCC+AGG | 0.521764 | 8.4:-30892650 | MS.gene23804:CDS |
| GCTCACTGCGAAGTATGGAT+TGG | 0.525157 | 8.4:+30893031 | None:intergenic |
| ATAAAATGACCATTGGATCA+AGG | 0.525711 | 8.4:-30892404 | MS.gene23804:CDS |
| GAACATGGGTCGCAGATATG+TGG | 0.527311 | 8.4:-30892757 | MS.gene23804:CDS |
| ATCGCTGAACCTCTTGGACC+TGG | 0.527472 | 8.4:+30892632 | None:intergenic |
| TTACAAGCTAATAGAAGATA+GGG | 0.529576 | 8.4:-30892520 | MS.gene23804:CDS |
| GGCAAAGAGAGCAATGTTCA+AGG | 0.531124 | 8.4:-30892427 | MS.gene23804:CDS |
| GCCGATCGTGGAACCATCTA+CGG | 0.536256 | 8.4:-30894237 | MS.gene23804:CDS |
| TTCCACGATCGGCATAGGAT+CGG | 0.538847 | 8.4:+30894247 | None:intergenic |
| GCCGTAGATGGTTCCACGAT+CGG | 0.539004 | 8.4:+30894236 | None:intergenic |
| CATTATGGATATGCCGGTGG+TGG | 0.541489 | 8.4:-30892987 | MS.gene23804:CDS |
| TGAAGGGCAATGTTGGGAAG+CGG | 0.544138 | 8.4:-30893107 | MS.gene23804:intron |
| CACATTGCATGTCGCCCAGA+TGG | 0.547640 | 8.4:-30892495 | MS.gene23804:CDS |
| CGAACCACAGGAAAAGGAGG+AGG | 0.551442 | 8.4:+30892951 | None:intergenic |
| GACCATTGGATCAAGGTATG+TGG | 0.553651 | 8.4:-30892397 | MS.gene23804:CDS |
| TTTCCTGTGGTTCGTCTAAG+GGG | 0.553773 | 8.4:-30892942 | MS.gene23804:CDS |
| ACAGAGAGATCGACAGAACA+TGG | 0.556371 | 8.4:-30892772 | MS.gene23804:CDS |
| TATCAACATTATGGATATGC+CGG | 0.567709 | 8.4:-30892993 | MS.gene23804:CDS |
| CGGCATAGGATCGGGAAAAG+GGG | 0.575655 | 8.4:+30894256 | None:intergenic |
| AGAGTTTGTTTCGCCAGATG+AGG | 0.577899 | 8.4:-30892448 | MS.gene23804:CDS |
| TACACCAGATGAAGCTAGAA+GGG | 0.581811 | 8.4:-30892361 | MS.gene23804:CDS |
| GAAGGGCCGAGTCAAGATCA+AGG | 0.583787 | 8.4:-30892344 | MS.gene23804:CDS |
| CTCCTCCCTCCAGGTCCAAG+AGG | 0.588640 | 8.4:-30892641 | MS.gene23804:CDS |
| TTCCTGTGGTTCGTCTAAGG+GGG | 0.588785 | 8.4:-30892941 | MS.gene23804:CDS |
| TTCCACATACCTTGATCCAA+TGG | 0.592618 | 8.4:+30892395 | None:intergenic |
| ACCACAGGAAAAGGAGGAGG+GGG | 0.594356 | 8.4:+30892954 | None:intergenic |
| TAGCTTCATCTGGTGTAGAA+GGG | 0.595598 | 8.4:+30892367 | None:intergenic |
| GAGTGGACGGTTCTCTGGAG+AGG | 0.596938 | 8.4:-30892838 | MS.gene23804:CDS |
| AACCTCTTGGACCTGGAGGG+AGG | 0.600460 | 8.4:+30892639 | None:intergenic |
| GTGTTACTGGTCAACAAGAG+TGG | 0.600765 | 8.4:-30892855 | MS.gene23804:CDS |
| ACCATCTACGGCGCTCCCAG+GGG | 0.605588 | 8.4:-30894225 | MS.gene23804:CDS |
| AGTCAAGATCAAGGCAGTGA+TGG | 0.605605 | 8.4:-30892335 | None:intergenic |
| AGCGATGGAGGATAACGATA+CGG | 0.606734 | 8.4:+30894285 | None:intergenic |
| CTGAACCTCTTGGACCTGGA+GGG | 0.609766 | 8.4:+30892636 | None:intergenic |
| GGCATAGGATCGGGAAAAGG+GGG | 0.611813 | 8.4:+30894257 | None:intergenic |
| AACCACAGGAAAAGGAGGAG+GGG | 0.612802 | 8.4:+30892953 | None:intergenic |
| CCATACTTCGCAGTGAGCAG+CGG | 0.625249 | 8.4:-30893026 | MS.gene23804:CDS |
| CCATCTACGGCGCTCCCAGG+GGG | 0.632400 | 8.4:-30894224 | MS.gene23804:intron |
| GCTGAACCTCTTGGACCTGG+AGG | 0.636647 | 8.4:+30892635 | None:intergenic |
| TACTGGTCAACAAGAGTGGA+CGG | 0.646908 | 8.4:-30892851 | MS.gene23804:CDS |
| GACCAGTAACACATCGACAA+TGG | 0.647869 | 8.4:+30892866 | None:intergenic |
| ACTGAGATATTGAAGATGCG+TGG | 0.652021 | 8.4:-30892591 | MS.gene23804:CDS |
| TCACTGCCTTGATCTTGACT+CGG | 0.652481 | 8.4:+30892338 | None:intergenic |
| CAACATTATGGATATGCCGG+TGG | 0.657238 | 8.4:-30892990 | MS.gene23804:CDS |
| AGACGAACCACAGGAAAAGG+AGG | 0.657588 | 8.4:+30892948 | None:intergenic |
| TGCTCCTGCAAAGACTACAA+AGG | 0.672800 | 8.4:+30892815 | None:intergenic |
| CAGAGAGATCGACAGAACAT+GGG | 0.682980 | 8.4:-30892771 | MS.gene23804:CDS |
| AGATGGTAAAGCTACAGGAG+AGG | 0.701989 | 8.4:-30892478 | MS.gene23804:CDS |
| ATATATGACAACGATTACCA+AGG | 0.709272 | 8.4:-30892669 | MS.gene23804:CDS |
| GCTGGTGAGATCAATTACGA+AGG | 0.716063 | 8.4:-30892693 | MS.gene23804:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATCAAAAAATTTCATA+GGG | - | chr8.4:30892645-30892664 | MS.gene23804:CDS | 10.0% |
| !! | TAAATATCAAAAAATTTCAT+AGG | - | chr8.4:30892644-30892663 | MS.gene23804:CDS | 10.0% |
| !!! | AAATTTGAGATTTGATTTAT+TGG | - | chr8.4:30892590-30892609 | MS.gene23804:CDS | 15.0% |
| !! | ACTAATGAATTACGAAAATA+TGG | - | chr8.4:30892914-30892933 | MS.gene23804:CDS | 20.0% |
| !! | ATGATAAAATTTATGACGTT+AGG | - | chr8.4:30893410-30893429 | MS.gene23804:intron | 20.0% |
| !! | GAATTGAAATTAAGTATATC+AGG | - | chr8.4:30893432-30893451 | MS.gene23804:intron | 20.0% |
| !! | TGATATTAAACATGTACATA+TGG | - | chr8.4:30892864-30892883 | MS.gene23804:CDS | 20.0% |
| !!! | TCCTTTTGTATTTTCTTTTT+GGG | - | chr8.4:30892467-30892486 | MS.gene23804:CDS | 20.0% |
| !!! | TTCCTTTTGTATTTTCTTTT+TGG | - | chr8.4:30892466-30892485 | MS.gene23804:CDS | 20.0% |
| !!! | TTTCTAAGAAAAGTAATTGA+TGG | - | chr8.4:30893298-30893317 | MS.gene23804:intron | 20.0% |
| !!! | TTTTTTGGGTATAAATTGAA+GGG | - | chr8.4:30893506-30893525 | MS.gene23804:intron | 20.0% |
| !!! | TTTTTTTGGGTATAAATTGA+AGG | - | chr8.4:30893505-30893524 | MS.gene23804:intron | 20.0% |
| ! | ACGAAAATATGGAAAATATG+CGG | - | chr8.4:30892925-30892944 | MS.gene23804:CDS | 25.0% |
| ! | ATTACAAGCTAATAGAAGAT+AGG | - | chr8.4:30894108-30894127 | MS.gene23804:intron | 25.0% |
| ! | TAAGTATATCAGGAAAACAT+GGG | - | chr8.4:30893442-30893461 | MS.gene23804:intron | 25.0% |
| ! | TCAAAAAATTTCATAGGGTT+AGG | - | chr8.4:30892650-30892669 | MS.gene23804:CDS | 25.0% |
| ! | TTAAGTATATCAGGAAAACA+TGG | - | chr8.4:30893441-30893460 | MS.gene23804:intron | 25.0% |
| ! | TTACAAGCTAATAGAAGATA+GGG | - | chr8.4:30894109-30894128 | MS.gene23804:intron | 25.0% |
| !! | CCTTTTGTATTTTCTTTTTG+GGG | - | chr8.4:30892468-30892487 | MS.gene23804:CDS | 25.0% |
| !! | TTTAAATGCTGTTACGTTTT+TGG | - | chr8.4:30893374-30893393 | MS.gene23804:intron | 25.0% |
| !! | TTTGATTTATGTGTGTGATT+AGG | - | chr8.4:30892491-30892510 | MS.gene23804:CDS | 25.0% |
| !!! | TGAGTTGTTTTAGAATTCTT+AGG | - | chr8.4:30892537-30892556 | MS.gene23804:CDS | 25.0% |
| ATAAAATGACCATTGGATCA+AGG | - | chr8.4:30894225-30894244 | MS.gene23804:CDS | 30.0% | |
| ATAAATTGAAGGGCAATGTT+GGG | - | chr8.4:30893516-30893535 | MS.gene23804:intron | 30.0% | |
| ATATATGACAACGATTACCA+AGG | - | chr8.4:30893960-30893979 | MS.gene23804:intron | 30.0% | |
| ATCGAAAAGAGATGAAGTTA+AGG | + | chr8.4:30892438-30892457 | None:intergenic | 30.0% | |
| CCCCAAAAAGAAAATACAAA+AGG | + | chr8.4:30892471-30892490 | None:intergenic | 30.0% | |
| CGAAAATATGGAAAATATGC+GGG | - | chr8.4:30892926-30892945 | MS.gene23804:CDS | 30.0% | |
| CTAAGAAAAGTAATTGATGG+TGG | - | chr8.4:30893301-30893320 | MS.gene23804:intron | 30.0% | |
| GTTTATTAACATGTGTGAGT+GGG | - | chr8.4:30893476-30893495 | MS.gene23804:intron | 30.0% | |
| TATAAATTGAAGGGCAATGT+TGG | - | chr8.4:30893515-30893534 | MS.gene23804:intron | 30.0% | |
| TATCAACATTATGGATATGC+CGG | - | chr8.4:30893636-30893655 | MS.gene23804:intron | 30.0% | |
| TCGAAAAGAGATGAAGTTAA+GGG | + | chr8.4:30892437-30892456 | None:intergenic | 30.0% | |
| TGGTGCATAAAGTTATAGTT+AGG | - | chr8.4:30892610-30892629 | MS.gene23804:CDS | 30.0% | |
| TTCAAGGATAAAATGACCAT+TGG | - | chr8.4:30894218-30894237 | MS.gene23804:intron | 30.0% | |
| TTTATTAACATGTGTGAGTG+GGG | - | chr8.4:30893477-30893496 | MS.gene23804:intron | 30.0% | |
| ! | ATGTAGCTTTTCCAAAATCA+CGG | - | chr8.4:30892811-30892830 | MS.gene23804:CDS | 30.0% |
| AAATTTCATAGGGTTAGGCT+AGG | - | chr8.4:30892655-30892674 | MS.gene23804:CDS | 35.0% | |
| AATTTCATAGGGTTAGGCTA+GGG | - | chr8.4:30892656-30892675 | MS.gene23804:CDS | 35.0% | |
| CATAAACCAATAGTGTACCA+AGG | + | chr8.4:30893332-30893351 | None:intergenic | 35.0% | |
| CCAAGACACAAACTATTAGT+TGG | + | chr8.4:30893258-30893277 | None:intergenic | 35.0% | |
| CTCAAAGAGACAAAGAATGA+TGG | - | chr8.4:30893572-30893591 | MS.gene23804:intron | 35.0% | |
| GATTATTACAATGCTGTTGC+TGG | - | chr8.4:30893918-30893937 | MS.gene23804:intron | 35.0% | |
| GGTTTATTAACATGTGTGAG+TGG | - | chr8.4:30893475-30893494 | MS.gene23804:intron | 35.0% | |
| GTTCAGCGATAAAGAACAAA+TGG | - | chr8.4:30894010-30894029 | MS.gene23804:intron | 35.0% | |
| TAGGAATCGTATTCGTGTTT+GGG | - | chr8.4:30892510-30892529 | MS.gene23804:CDS | 35.0% | |
| TCTATGTCTGTGCAGTTAAA+CGG | + | chr8.4:30893717-30893736 | None:intergenic | 35.0% | |
| TGAGATTTAGTCACCAAGAA+AGG | + | chr8.4:30894068-30894087 | None:intergenic | 35.0% | |
| TGCTTTCATCCATGTGATTA+GGG | - | chr8.4:30892968-30892987 | MS.gene23804:CDS | 35.0% | |
| TTAGGAATCGTATTCGTGTT+TGG | - | chr8.4:30892509-30892528 | MS.gene23804:CDS | 35.0% | |
| TTATTAACATGTGTGAGTGG+GGG | - | chr8.4:30893478-30893497 | MS.gene23804:intron | 35.0% | |
| ! | CCAACTAATAGTTTGTGTCT+TGG | - | chr8.4:30893255-30893274 | MS.gene23804:intron | 35.0% |
| !! | TGGTACACTATTGGTTTATG+TGG | - | chr8.4:30893332-30893351 | MS.gene23804:intron | 35.0% |
| !!! | GACATTTTGAAGTTCTTTGC+TGG | - | chr8.4:30893735-30893754 | MS.gene23804:intron | 35.0% |
| !!! | GAGTGGGGGATTTTTTTTTT+GGG | - | chr8.4:30893492-30893511 | MS.gene23804:intron | 35.0% |
| !!! | TGAGTGGGGGATTTTTTTTT+TGG | - | chr8.4:30893491-30893510 | MS.gene23804:intron | 35.0% |
| ACAGGCAGCTATCAACATTA+TGG | - | chr8.4:30893627-30893646 | MS.gene23804:intron | 40.0% | |
| ACAGTAGCTCACCATGATTT+CGG | + | chr8.4:30892771-30892790 | None:intergenic | 40.0% | |
| ACTGAGATATTGAAGATGCG+TGG | - | chr8.4:30894038-30894057 | MS.gene23804:intron | 40.0% | |
| CTAATCACATGGATGAAAGC+AGG | + | chr8.4:30892969-30892988 | None:intergenic | 40.0% | |
| CTGCTTTCATCCATGTGATT+AGG | - | chr8.4:30892967-30892986 | MS.gene23804:CDS | 40.0% | |
| GTCTATCCTTGGTACACTAT+TGG | - | chr8.4:30893323-30893342 | MS.gene23804:intron | 40.0% | |
| TACACCAGATGAAGCTAGAA+GGG | - | chr8.4:30894268-30894287 | MS.gene23804:CDS | 40.0% | |
| TAGCTTCATCTGGTGTAGAA+GGG | + | chr8.4:30894265-30894284 | None:intergenic | 40.0% | |
| TTCCACATACCTTGATCCAA+TGG | + | chr8.4:30894237-30894256 | None:intergenic | 40.0% | |
| TTCTTTATCGCTGAACCTCT+TGG | + | chr8.4:30894006-30894025 | None:intergenic | 40.0% | |
| ! | ATCAGGAAAACATGGGTTGT+GGG | - | chr8.4:30893449-30893468 | MS.gene23804:intron | 40.0% |
| ! | CTGTAGCTTTACCGAAATCA+TGG | - | chr8.4:30892757-30892776 | MS.gene23804:CDS | 40.0% |
| ! | GCAGATATGTGGAAGTTTTC+AGG | - | chr8.4:30893883-30893902 | MS.gene23804:intron | 40.0% |
| ! | TAGCTTTTCCAAAATCACGG+CGG | - | chr8.4:30892814-30892833 | MS.gene23804:CDS | 40.0% |
| ! | TATCAGGAAAACATGGGTTG+TGG | - | chr8.4:30893448-30893467 | MS.gene23804:intron | 40.0% |
| ! | TTTTCCTGTGGTTCGTCTAA+GGG | - | chr8.4:30893686-30893705 | MS.gene23804:intron | 40.0% |
| ! | TTTTGCTTGTGTGCTCTGTT+TGG | - | chr8.4:30893224-30893243 | MS.gene23804:intron | 40.0% |
| !! | AATTGATGGTGGTCTATCCT+TGG | - | chr8.4:30893312-30893331 | MS.gene23804:intron | 40.0% |
| !! | AGCTTTGTTAGTCTGGTGTT+AGG | - | chr8.4:30893136-30893155 | MS.gene23804:intron | 40.0% |
| !!! | AGTTTTCAGGTGTAAGAAGC+AGG | - | chr8.4:30893896-30893915 | MS.gene23804:intron | 40.0% |
| ACAGAGAGATCGACAGAACA+TGG | - | chr8.4:30893857-30893876 | MS.gene23804:intron | 45.0% | |
| ACCAACGACGCACTATATCA+GGG | + | chr8.4:30892733-30892752 | None:intergenic | 45.0% | |
| AGATGGTAAAGCTACAGGAG+AGG | - | chr8.4:30894151-30894170 | MS.gene23804:intron | 45.0% | |
| AGCGATGGAGGATAACGATA+CGG | + | chr8.4:30892347-30892366 | None:intergenic | 45.0% | |
| ATTGCTCTCTTTGCCTCATC+TGG | + | chr8.4:30894197-30894216 | None:intergenic | 45.0% | |
| CAACATTATGGATATGCCGG+TGG | - | chr8.4:30893639-30893658 | MS.gene23804:intron | 45.0% | |
| CAGAGAGATCGACAGAACAT+GGG | - | chr8.4:30893858-30893877 | MS.gene23804:intron | 45.0% | |
| CCAGACTAACAAAGCTCAGA+AGG | + | chr8.4:30893132-30893151 | None:intergenic | 45.0% | |
| CTACACCAGATGAAGCTAGA+AGG | - | chr8.4:30894267-30894286 | MS.gene23804:CDS | 45.0% | |
| CTAGCTTCATCTGGTGTAGA+AGG | + | chr8.4:30894266-30894285 | None:intergenic | 45.0% | |
| CTTAGACGAACCACAGGAAA+AGG | + | chr8.4:30893687-30893706 | None:intergenic | 45.0% | |
| GACCAGTAACACATCGACAA+TGG | + | chr8.4:30893766-30893785 | None:intergenic | 45.0% | |
| GACCATTGGATCAAGGTATG+TGG | - | chr8.4:30894232-30894251 | MS.gene23804:CDS | 45.0% | |
| GACCATTGTCGATGTGTTAC+TGG | - | chr8.4:30893761-30893780 | MS.gene23804:intron | 45.0% | |
| GACGCACTATATCAGGGTAT+AGG | + | chr8.4:30892727-30892746 | None:intergenic | 45.0% | |
| GCTGGTGAGATCAATTACGA+AGG | - | chr8.4:30893936-30893955 | MS.gene23804:intron | 45.0% | |
| GGCAAAGAGAGCAATGTTCA+AGG | - | chr8.4:30894202-30894221 | MS.gene23804:intron | 45.0% | |
| TACCAACGACGCACTATATC+AGG | + | chr8.4:30892734-30892753 | None:intergenic | 45.0% | |
| TACTGGTCAACAAGAGTGGA+CGG | - | chr8.4:30893778-30893797 | MS.gene23804:intron | 45.0% | |
| TCACTGCCTTGATCTTGACT+CGG | + | chr8.4:30894294-30894313 | None:intergenic | 45.0% | |
| TCCATGTGATTAGGGTCAGT+AGG | - | chr8.4:30892976-30892995 | MS.gene23804:CDS | 45.0% | |
| TGCTCCTGCAAAGACTACAA+AGG | + | chr8.4:30893817-30893836 | None:intergenic | 45.0% | |
| TTTCCTGTGGTTCGTCTAAG+GGG | - | chr8.4:30893687-30893706 | MS.gene23804:intron | 45.0% | |
| ! | ACAGTAAACCGCCGTGATTT+TGG | + | chr8.4:30892825-30892844 | None:intergenic | 45.0% |
| ! | AGAGTTTGTTTCGCCAGATG+AGG | - | chr8.4:30894181-30894200 | MS.gene23804:intron | 45.0% |
| ! | CTCCTGTAGCTTTACCATCT+GGG | + | chr8.4:30894151-30894170 | None:intergenic | 45.0% |
| ! | CTTTTCCTGTGGTTCGTCTA+AGG | - | chr8.4:30893685-30893704 | MS.gene23804:intron | 45.0% |
| ! | GAAAACATGGGTTGTGGGTT+TGG | - | chr8.4:30893454-30893473 | MS.gene23804:intron | 45.0% |
| ! | GTGTTACTGGTCAACAAGAG+TGG | - | chr8.4:30893774-30893793 | MS.gene23804:intron | 45.0% |
| ! | TCTCCTGTAGCTTTACCATC+TGG | + | chr8.4:30894152-30894171 | None:intergenic | 45.0% |
| !! | CCTTCTGAGCTTTGTTAGTC+TGG | - | chr8.4:30893129-30893148 | MS.gene23804:intron | 45.0% |
| AACAAGAGTGGACGGTTCTC+TGG | - | chr8.4:30893786-30893805 | MS.gene23804:intron | 50.0% | |
| AACCACAGGAAAAGGAGGAG+GGG | + | chr8.4:30893679-30893698 | None:intergenic | 50.0% | |
| ACCCTGATATAGTGCGTCGT+TGG | - | chr8.4:30892729-30892748 | MS.gene23804:CDS | 50.0% | |
| AGACGAACCACAGGAAAAGG+AGG | + | chr8.4:30893684-30893703 | None:intergenic | 50.0% | |
| AGTCTTTGCAGGAGCAATGC+AGG | - | chr8.4:30893821-30893840 | MS.gene23804:intron | 50.0% | |
| AGTTAAGGGAACATACCCCC+TGG | + | chr8.4:30892423-30892442 | None:intergenic | 50.0% | |
| ATCGGCATAGGATCGGGAAA+AGG | + | chr8.4:30892378-30892397 | None:intergenic | 50.0% | |
| CATTATGGATATGCCGGTGG+TGG | - | chr8.4:30893642-30893661 | MS.gene23804:intron | 50.0% | |
| GAACATGGGTCGCAGATATG+TGG | - | chr8.4:30893872-30893891 | MS.gene23804:intron | 50.0% | |
| GAACCACAGGAAAAGGAGGA+GGG | + | chr8.4:30893680-30893699 | None:intergenic | 50.0% | |
| GAGGCCTTTGTAGTCTTTGC+AGG | - | chr8.4:30893810-30893829 | MS.gene23804:intron | 50.0% | |
| GATGCGTGGACTTCCTTTCT+TGG | - | chr8.4:30894052-30894071 | MS.gene23804:intron | 50.0% | |
| GCCTACTGACCCTAATCACA+TGG | + | chr8.4:30892980-30892999 | None:intergenic | 50.0% | |
| GCTCACTGCGAAGTATGGAT+TGG | + | chr8.4:30893601-30893620 | None:intergenic | 50.0% | |
| GTTAAGGGAACATACCCCCT+GGG | + | chr8.4:30892422-30892441 | None:intergenic | 50.0% | |
| TCGGCATAGGATCGGGAAAA+GGG | + | chr8.4:30892377-30892396 | None:intergenic | 50.0% | |
| TGAAGGGCAATGTTGGGAAG+CGG | - | chr8.4:30893522-30893541 | MS.gene23804:intron | 50.0% | |
| TTCCACGATCGGCATAGGAT+CGG | + | chr8.4:30892385-30892404 | None:intergenic | 50.0% | |
| TTCCTGTGGTTCGTCTAAGG+GGG | - | chr8.4:30893688-30893707 | MS.gene23804:intron | 50.0% | |
| AAGGGCAATGTTGGGAAGCG+GGG | - | chr8.4:30893524-30893543 | MS.gene23804:intron | 55.0% | |
| ACCACAGGAAAAGGAGGAGG+GGG | + | chr8.4:30893678-30893697 | None:intergenic | 55.0% | |
| ATCGCTGAACCTCTTGGACC+TGG | + | chr8.4:30894000-30894019 | None:intergenic | 55.0% | |
| CACATTGCATGTCGCCCAGA+TGG | - | chr8.4:30894134-30894153 | MS.gene23804:intron | 55.0% | |
| CCATACTTCGCAGTGAGCAG+CGG | - | chr8.4:30893603-30893622 | MS.gene23804:intron | 55.0% | |
| CGAACCACAGGAAAAGGAGG+AGG | + | chr8.4:30893681-30893700 | None:intergenic | 55.0% | |
| CGCCCAGATGGTAAAGCTAC+AGG | - | chr8.4:30894146-30894165 | MS.gene23804:intron | 55.0% | |
| CGGCATAGGATCGGGAAAAG+GGG | + | chr8.4:30892376-30892395 | None:intergenic | 55.0% | |
| CTGAACCTCTTGGACCTGGA+GGG | + | chr8.4:30893996-30894015 | None:intergenic | 55.0% | |
| GAAAAGGGGGAATCGAGCGA+TGG | + | chr8.4:30892362-30892381 | None:intergenic | 55.0% | |
| GAAGGGCAATGTTGGGAAGC+GGG | - | chr8.4:30893523-30893542 | MS.gene23804:intron | 55.0% | |
| GAAGGGCCGAGTCAAGATCA+AGG | - | chr8.4:30894285-30894304 | MS.gene23804:CDS | 55.0% | |
| GATGGTTCCACGATCGGCAT+AGG | + | chr8.4:30892390-30892409 | None:intergenic | 55.0% | |
| GCCGATCGTGGAACCATCTA+CGG | - | chr8.4:30892392-30892411 | MS.gene23804:CDS | 55.0% | |
| GCCGTAGATGGTTCCACGAT+CGG | + | chr8.4:30892396-30892415 | None:intergenic | 55.0% | |
| GGCATAGGATCGGGAAAAGG+GGG | + | chr8.4:30892375-30892394 | None:intergenic | 55.0% | |
| TCCACGATCGGCATAGGATC+GGG | + | chr8.4:30892384-30892403 | None:intergenic | 55.0% | |
| ! | TATGGATATGCCGGTGGTGG+CGG | - | chr8.4:30893645-30893664 | MS.gene23804:intron | 55.0% |
| !! | TCGGCCCTTCTAGCTTCATC+TGG | + | chr8.4:30894275-30894294 | None:intergenic | 55.0% |
| AACCATCTACGGCGCTCCCA+GGG | - | chr8.4:30892403-30892422 | MS.gene23804:CDS | 60.0% | |
| AACCTCTTGGACCTGGAGGG+AGG | + | chr8.4:30893993-30894012 | None:intergenic | 60.0% | |
| AAGGGGGAATCGAGCGATGG+AGG | + | chr8.4:30892359-30892378 | None:intergenic | 60.0% | |
| AGCCCCCTTAGACGAACCAC+AGG | + | chr8.4:30893693-30893712 | None:intergenic | 60.0% | |
| AGGGCAATGTTGGGAAGCGG+GGG | - | chr8.4:30893525-30893544 | MS.gene23804:intron | 60.0% | |
| CCGCTGCTCACTGCGAAGTA+TGG | + | chr8.4:30893606-30893625 | None:intergenic | 60.0% | |
| GCTGAACCTCTTGGACCTGG+AGG | + | chr8.4:30893997-30894016 | None:intergenic | 60.0% | |
| GTTTCGGACGGGTACGAGGT+TGG | - | chr8.4:30893549-30893568 | MS.gene23804:intron | 60.0% | |
| TCCCGATCCTATGCCGATCG+TGG | - | chr8.4:30892380-30892399 | MS.gene23804:CDS | 60.0% | |
| TCTTGGACCTGGAGGGAGGA+GGG | + | chr8.4:30893989-30894008 | None:intergenic | 60.0% | |
| TTCGCAGTGAGCAGCGGAAC+AGG | - | chr8.4:30893609-30893628 | MS.gene23804:intron | 60.0% | |
| ! | GAGTGGACGGTTCTCTGGAG+AGG | - | chr8.4:30893791-30893810 | MS.gene23804:intron | 60.0% |
| AAGGAAGCCCTCCTCCCTCC+AGG | - | chr8.4:30893979-30893998 | MS.gene23804:intron | 65.0% | |
| ACCATCTACGGCGCTCCCAG+GGG | - | chr8.4:30892404-30892423 | MS.gene23804:CDS | 65.0% | |
| CAGGAAAAGGAGGAGGGGGC+TGG | + | chr8.4:30893674-30893693 | None:intergenic | 65.0% | |
| CTCCTCCCTCCAGGTCCAAG+AGG | - | chr8.4:30893988-30894007 | MS.gene23804:intron | 65.0% | |
| CTCTTGGACCTGGAGGGAGG+AGG | + | chr8.4:30893990-30894009 | None:intergenic | 65.0% | |
| GAACCATCTACGGCGCTCCC+AGG | - | chr8.4:30892402-30892421 | MS.gene23804:CDS | 65.0% | |
| GGCAATGTTGGGAAGCGGGG+GGG | - | chr8.4:30893527-30893546 | MS.gene23804:intron | 65.0% | |
| GGGCAATGTTGGGAAGCGGG+GGG | - | chr8.4:30893526-30893545 | MS.gene23804:intron | 65.0% | |
| GTTGGGAAGCGGGGGGGTTT+CGG | - | chr8.4:30893533-30893552 | MS.gene23804:intron | 65.0% | |
| TGGAGGGAGGAGGGCTTCCT+TGG | + | chr8.4:30893980-30893999 | None:intergenic | 65.0% | |
| ! | GCCCCCTCCTCCTTTTCCTG+TGG | - | chr8.4:30893674-30893693 | MS.gene23804:intron | 65.0% |
| CCATCTACGGCGCTCCCAGG+GGG | - | chr8.4:30892405-30892424 | MS.gene23804:CDS | 70.0% | |
| GAAGCGGGGGGGTTTCGGAC+GGG | - | chr8.4:30893538-30893557 | MS.gene23804:intron | 70.0% | |
| GGAAGCGGGGGGGTTTCGGA+CGG | - | chr8.4:30893537-30893556 | MS.gene23804:intron | 70.0% | |
| GGGGGTTTCGGACGGGTACG+AGG | - | chr8.4:30893545-30893564 | MS.gene23804:intron | 70.0% | |
| GGGCTGGAAGCCGCCACCAC+CGG | + | chr8.4:30893658-30893677 | None:intergenic | 75.0% | |
| !! | CCCCCTGGGAGCGCCGTAGA+TGG | + | chr8.4:30892408-30892427 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 30892338 | 30894313 | 30892338 | ID=MS.gene23804 |
| chr8.4 | mRNA | 30892338 | 30894313 | 30892338 | ID=MS.gene23804.t1;Parent=MS.gene23804 |
| chr8.4 | exon | 30894225 | 30894313 | 30894225 | ID=MS.gene23804.t1.exon1;Parent=MS.gene23804.t1 |
| chr8.4 | CDS | 30894225 | 30894313 | 30894225 | ID=cds.MS.gene23804.t1;Parent=MS.gene23804.t1 |
| chr8.4 | exon | 30892338 | 30893124 | 30892338 | ID=MS.gene23804.t1.exon2;Parent=MS.gene23804.t1 |
| chr8.4 | CDS | 30892338 | 30893124 | 30892338 | ID=cds.MS.gene23804.t1;Parent=MS.gene23804.t1 |
| Gene Sequence |
| Protein sequence |
