Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27229.t1 | XP_003629130.1 | 96.6 | 291 | 9 | 1 | 1 | 291 | 1 | 290 | 7.30E-157 | 563.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27229.t1 | Q5E9J1 | 34.5 | 203 | 106 | 4 | 86 | 283 | 12 | 192 | 1.3e-26 | 121.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27229.t1 | G7L9D8 | 96.6 | 291 | 9 | 1 | 1 | 291 | 1 | 290 | 5.2e-157 | 563.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065379 | MS.gene27229 | PPI |
| MS.gene24612 | MS.gene27229 | PPI |
| MS.gene033319 | MS.gene27229 | PPI |
| MS.gene27229 | MS.gene75015 | PPI |
| MS.gene48301 | MS.gene27229 | PPI |
| MS.gene033701 | MS.gene27229 | PPI |
| MS.gene059960 | MS.gene27229 | PPI |
| MS.gene31434 | MS.gene27229 | PPI |
| MS.gene029818 | MS.gene27229 | PPI |
| MS.gene27229 | MS.gene055778 | PPI |
| MS.gene055908 | MS.gene27229 | PPI |
| MS.gene028868 | MS.gene27229 | PPI |
| MS.gene043455 | MS.gene27229 | PPI |
| MS.gene024268 | MS.gene27229 | PPI |
| MS.gene54953 | MS.gene27229 | PPI |
| MS.gene27229 | MS.gene011357 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27229.t1 | MTR_8g073580 | 98.969 | 291 | 2 | 1 | 1 | 291 | 1 | 290 | 0.0 | 583 |
| MS.gene27229.t1 | MTR_8g073580 | 99.138 | 232 | 1 | 1 | 60 | 291 | 13 | 243 | 2.20e-168 | 466 |
| MS.gene27229.t1 | MTR_3g061590 | 52.124 | 259 | 105 | 6 | 40 | 290 | 12 | 259 | 5.55e-77 | 235 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27229.t1 | AT5G66010 | 69.742 | 271 | 63 | 5 | 24 | 291 | 1 | 255 | 4.49e-123 | 352 |
| MS.gene27229.t1 | AT5G66010 | 70.186 | 161 | 42 | 2 | 134 | 291 | 1 | 158 | 2.88e-70 | 214 |
| MS.gene27229.t1 | AT3G20890 | 43.986 | 291 | 126 | 6 | 34 | 290 | 5 | 292 | 3.14e-65 | 206 |
| MS.gene27229.t1 | AT3G20890 | 42.365 | 203 | 87 | 3 | 118 | 290 | 27 | 229 | 7.16e-46 | 154 |
Find 95 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTCTCTTTGCCTCATC+TGG | 0.312683 | 8.3:-29057337 | None:intergenic |
| GAGGCCTTTGTAGTCTTTGC+AGG | 0.327405 | 8.3:+29056953 | MS.gene27229:CDS |
| GATGCGTGGACTTCCTTTCT+TGG | 0.329252 | 8.3:+29057195 | MS.gene27229:CDS |
| CCGCTGCTCACTGCGAAGTA+TGG | 0.332843 | 8.3:-29056746 | None:intergenic |
| CTAGCTTCATCTGGTGTAGA+AGG | 0.341720 | 8.3:-29057406 | None:intergenic |
| TCTCCTGTAGCTTTACCATC+TGG | 0.351272 | 8.3:-29057292 | None:intergenic |
| GACCATTGTCGATGTGTTAC+TGG | 0.356325 | 8.3:+29056904 | MS.gene27229:CDS |
| ACAGGCAGCTATCAACATTA+TGG | 0.356559 | 8.3:+29056770 | MS.gene27229:CDS |
| AACAAGAGTGGACGGTTCTC+TGG | 0.381015 | 8.3:+29056929 | MS.gene27229:CDS |
| TTCTTTATCGCTGAACCTCT+TGG | 0.382586 | 8.3:-29057146 | None:intergenic |
| ATTACAAGCTGATAGAAGAT+AGG | 0.386176 | 8.3:+29057251 | MS.gene27229:CDS |
| CTACACCAGATGAAGCTAGA+AGG | 0.392023 | 8.3:+29057410 | MS.gene27229:CDS |
| GATTATTACAATGCTGTTGC+TGG | 0.393585 | 8.3:+29057061 | MS.gene27229:CDS |
| TATAAATTGAAGGGCAATGT+TGG | 0.401209 | 8.3:+29056658 | MS.gene27229:intron |
| GAACCATCTACGGCGCTCCC+AGG | 0.402513 | 8.3:+29055527 | MS.gene27229:CDS |
| AAGGGCAATGTTGGGAAGCG+GGG | 0.403199 | 8.3:+29056667 | MS.gene27229:intron |
| TTCGCAGTGAGCAGCGGAAC+AGG | 0.403956 | 8.3:+29056752 | MS.gene27229:CDS |
| AGGGCAATGTTGGGAAGCGG+GGG | 0.422275 | 8.3:+29056668 | MS.gene27229:intron |
| TGGAGGGAGGAGGGCTTCCT+TGG | 0.428148 | 8.3:-29057120 | None:intergenic |
| GAAGGGCAATGTTGGGAAGC+GGG | 0.429195 | 8.3:+29056666 | MS.gene27229:intron |
| ATCGGCATAGGAACGGGAAA+AGG | 0.437864 | 8.3:-29055500 | None:intergenic |
| GGCAATGTTGGGAAGCGGGG+GGG | 0.440568 | 8.3:+29056670 | MS.gene27229:CDS |
| GTTCAGCGATAAAGAACAAA+TGG | 0.442718 | 8.3:+29057153 | MS.gene27229:CDS |
| TCCACGATCGGCATAGGAAC+GGG | 0.449206 | 8.3:-29055506 | None:intergenic |
| TCGGCCCTTCTAGCTTCATC+TGG | 0.450631 | 8.3:-29057415 | None:intergenic |
| TCTATGTCTGTGCAGTTAAA+CGG | 0.457816 | 8.3:-29056857 | None:intergenic |
| TATGGATATGCCGGTGGTGG+CGG | 0.459791 | 8.3:+29056788 | MS.gene27229:CDS |
| AACCATCTACGGCGCTCCCA+GGG | 0.461242 | 8.3:+29055528 | MS.gene27229:CDS |
| GGGCAATGTTGGGAAGCGGG+GGG | 0.462515 | 8.3:+29056669 | MS.gene27229:intron |
| CTCCTGTAGCTTTACCATCT+GGG | 0.464237 | 8.3:-29057291 | None:intergenic |
| TGAGATTTAGTCACCAAGAA+AGG | 0.464772 | 8.3:-29057208 | None:intergenic |
| TCGGCATAGGAACGGGAAAA+GGG | 0.466317 | 8.3:-29055499 | None:intergenic |
| GGGCTGGAAGCCGCCACCAC+CGG | 0.468374 | 8.3:-29056798 | None:intergenic |
| CGCCCAGATGGTAAAGCTAC+AGG | 0.474461 | 8.3:+29057289 | MS.gene27229:CDS |
| CTTAGACGAACCACAGGAAA+AGG | 0.474614 | 8.3:-29056827 | None:intergenic |
| TCCCGTTCCTATGCCGATCG+TGG | 0.477170 | 8.3:+29055505 | MS.gene27229:CDS |
| GTTTCGGACGGGTACGAGGT+TGG | 0.490680 | 8.3:+29056692 | MS.gene27229:CDS |
| CTCTTGGACCTGGAGGGAGG+AGG | 0.491713 | 8.3:-29057130 | None:intergenic |
| AGTCTTTGCAGGAGCAATGC+AGG | 0.496210 | 8.3:+29056964 | MS.gene27229:CDS |
| TTCAAGGATAAAATGACCAT+TGG | 0.498109 | 8.3:+29057361 | MS.gene27229:CDS |
| CTCAAAGAGACAAAGAATGA+TGG | 0.499681 | 8.3:+29056715 | MS.gene27229:CDS |
| ATAAATTGAAGGGCAATGTT+GGG | 0.502268 | 8.3:+29056659 | MS.gene27229:intron |
| GAACCACAGGAAAAGGAGGA+GGG | 0.503041 | 8.3:-29056820 | None:intergenic |
| TCTTGGACCTGGAGGGAGGA+GGG | 0.506240 | 8.3:-29057129 | None:intergenic |
| GATGGTTCCACGATCGGCAT+AGG | 0.506334 | 8.3:-29055512 | None:intergenic |
| AAGGAAGCCCTCCTCCCTCC+AGG | 0.521764 | 8.3:+29057122 | MS.gene27229:CDS |
| GCTCACTGCGAAGTATGGAT+TGG | 0.525157 | 8.3:-29056741 | None:intergenic |
| ATAAAATGACCATTGGATCA+AGG | 0.525711 | 8.3:+29057368 | MS.gene27229:CDS |
| GAACATGGGTCGCAGATATG+TGG | 0.527311 | 8.3:+29057015 | MS.gene27229:CDS |
| ATCGCTGAACCTCTTGGACC+TGG | 0.527472 | 8.3:-29057140 | None:intergenic |
| GGCAAAGAGAGCAATGTTCA+AGG | 0.531124 | 8.3:+29057345 | MS.gene27229:CDS |
| GCCGATCGTGGAACCATCTA+CGG | 0.536256 | 8.3:+29055517 | MS.gene27229:CDS |
| GCCGTAGATGGTTCCACGAT+CGG | 0.539004 | 8.3:-29055518 | None:intergenic |
| CATTATGGATATGCCGGTGG+TGG | 0.541489 | 8.3:+29056785 | MS.gene27229:CDS |
| TGAAGGGCAATGTTGGGAAG+CGG | 0.544138 | 8.3:+29056665 | MS.gene27229:intron |
| CACATTGCATGTCGCCCAGA+TGG | 0.547640 | 8.3:+29057277 | MS.gene27229:CDS |
| CGAACCACAGGAAAAGGAGG+AGG | 0.551442 | 8.3:-29056821 | None:intergenic |
| GACCATTGGATCAAGGTATG+TGG | 0.553651 | 8.3:+29057375 | MS.gene27229:CDS |
| TTTCCTGTGGTTCGTCTAAG+GGG | 0.553773 | 8.3:+29056830 | MS.gene27229:CDS |
| ACAGAGAGATCGACAGAACA+TGG | 0.556371 | 8.3:+29057000 | MS.gene27229:CDS |
| TTACAAGCTGATAGAAGATA+GGG | 0.560052 | 8.3:+29057252 | MS.gene27229:CDS |
| TATCAACATTATGGATATGC+CGG | 0.567709 | 8.3:+29056779 | MS.gene27229:CDS |
| TTCCACGATCGGCATAGGAA+CGG | 0.576905 | 8.3:-29055507 | None:intergenic |
| AGAGTTTGTTTCGCCAGATG+AGG | 0.577899 | 8.3:+29057324 | MS.gene27229:CDS |
| TACACCAGATGAAGCTAGAA+GGG | 0.581811 | 8.3:+29057411 | MS.gene27229:CDS |
| GAAGGGCCGAGTCAAGATCA+AGG | 0.583787 | 8.3:+29057428 | MS.gene27229:CDS |
| CGGCATAGGAACGGGAAAAG+GGG | 0.588286 | 8.3:-29055498 | None:intergenic |
| CTCCTCCCTCCAGGTCCAAG+AGG | 0.588640 | 8.3:+29057131 | MS.gene27229:CDS |
| TTCCTGTGGTTCGTCTAAGG+GGG | 0.588785 | 8.3:+29056831 | MS.gene27229:CDS |
| TTCCACATACCTTGATCCAA+TGG | 0.592618 | 8.3:-29057377 | None:intergenic |
| ACCACAGGAAAAGGAGGAGG+GGG | 0.594356 | 8.3:-29056818 | None:intergenic |
| TAGCTTCATCTGGTGTAGAA+GGG | 0.595598 | 8.3:-29057405 | None:intergenic |
| GAGTGGACGGTTCTCTGGAG+AGG | 0.596938 | 8.3:+29056934 | MS.gene27229:CDS |
| AACCTCTTGGACCTGGAGGG+AGG | 0.600460 | 8.3:-29057133 | None:intergenic |
| GTGTTACTGGTCAACAAGAG+TGG | 0.600765 | 8.3:+29056917 | MS.gene27229:CDS |
| ACCATCTACGGCGCTCCCAG+GGG | 0.605588 | 8.3:+29055529 | MS.gene27229:CDS |
| AGTCAAGATCAAGGCAGTGA+TGG | 0.605605 | 8.3:+29057437 | MS.gene27229:CDS |
| CTGAACCTCTTGGACCTGGA+GGG | 0.609766 | 8.3:-29057136 | None:intergenic |
| AACCACAGGAAAAGGAGGAG+GGG | 0.612802 | 8.3:-29056819 | None:intergenic |
| GGCATAGGAACGGGAAAAGG+GGG | 0.624444 | 8.3:-29055497 | None:intergenic |
| CCATACTTCGCAGTGAGCAG+CGG | 0.625249 | 8.3:+29056746 | MS.gene27229:CDS |
| CCATCTACGGCGCTCCCAGG+GGG | 0.632400 | 8.3:+29055530 | MS.gene27229:CDS |
| AGCGACGGAGGATAACGATA+CGG | 0.635437 | 8.3:-29055469 | None:intergenic |
| GCTGAACCTCTTGGACCTGG+AGG | 0.636647 | 8.3:-29057137 | None:intergenic |
| TACTGGTCAACAAGAGTGGA+CGG | 0.646908 | 8.3:+29056921 | MS.gene27229:CDS |
| GACCAGTAACACATCGACAA+TGG | 0.647869 | 8.3:-29056906 | None:intergenic |
| ACTGAGATATTGAAGATGCG+TGG | 0.652021 | 8.3:+29057181 | MS.gene27229:CDS |
| TCACTGCCTTGATCTTGACT+CGG | 0.652481 | 8.3:-29057434 | None:intergenic |
| CAACATTATGGATATGCCGG+TGG | 0.657238 | 8.3:+29056782 | MS.gene27229:CDS |
| AGACGAACCACAGGAAAAGG+AGG | 0.657588 | 8.3:-29056824 | None:intergenic |
| TGCTCCTGCAAAGACTACAA+AGG | 0.672800 | 8.3:-29056957 | None:intergenic |
| CAGAGAGATCGACAGAACAT+GGG | 0.682980 | 8.3:+29057001 | MS.gene27229:CDS |
| AGATGGTAAAGCTACAGGAG+AGG | 0.701989 | 8.3:+29057294 | MS.gene27229:CDS |
| ATATATGACAACGATTACCA+AGG | 0.709272 | 8.3:+29057103 | MS.gene27229:CDS |
| GCTGGTGAGATCAATTACGA+AGG | 0.716063 | 8.3:+29057079 | MS.gene27229:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATCAAAAAATTTCATA+GGG | + | chr8.3:29055791-29055810 | MS.gene27229:intron | 10.0% |
| !! | TAAATATCAAAAAATTTCAT+AGG | + | chr8.3:29055790-29055809 | MS.gene27229:intron | 10.0% |
| !!! | AAATTTGAGATTTGATTTAT+TGG | + | chr8.3:29055736-29055755 | MS.gene27229:intron | 15.0% |
| !! | ACTAATGAATTACGAAAATA+TGG | + | chr8.3:29056059-29056078 | MS.gene27229:intron | 20.0% |
| !! | ATGATAAAATTTATGACGTT+AGG | + | chr8.3:29056552-29056571 | MS.gene27229:intron | 20.0% |
| !! | GAATTGAAATTAAGTATATC+AGG | + | chr8.3:29056574-29056593 | MS.gene27229:intron | 20.0% |
| !! | TGATATTAAACATGTACATA+TGG | + | chr8.3:29056009-29056028 | MS.gene27229:intron | 20.0% |
| !!! | AGCTTTTGTATTTTCTTTTT+GGG | + | chr8.3:29055599-29055618 | MS.gene27229:intron | 20.0% |
| !!! | TAGCTTTTGTATTTTCTTTT+TGG | + | chr8.3:29055598-29055617 | MS.gene27229:intron | 20.0% |
| !!! | TTTTTTGGGTATAAATTGAA+GGG | + | chr8.3:29056649-29056668 | MS.gene27229:intron | 20.0% |
| !!! | TTTTTTTGGGTATAAATTGA+AGG | + | chr8.3:29056648-29056667 | MS.gene27229:intron | 20.0% |
| ! | ACGAAAATATGGAAAATATG+CGG | + | chr8.3:29056070-29056089 | MS.gene27229:intron | 25.0% |
| ! | TAAGTATATCAGGAAAACAT+GGG | + | chr8.3:29056584-29056603 | MS.gene27229:intron | 25.0% |
| ! | TCAAAAAATTTCATAGGGTT+AGG | + | chr8.3:29055796-29055815 | MS.gene27229:intron | 25.0% |
| ! | TTAAGTATATCAGGAAAACA+TGG | + | chr8.3:29056583-29056602 | MS.gene27229:intron | 25.0% |
| ! | TTTCGAAGAAAAGTAATTGA+TGG | + | chr8.3:29056440-29056459 | MS.gene27229:intron | 25.0% |
| !! | GCTTTTGTATTTTCTTTTTG+GGG | + | chr8.3:29055600-29055619 | MS.gene27229:intron | 25.0% |
| !! | TTTAAATGCTGTTACGTTTT+TGG | + | chr8.3:29056516-29056535 | MS.gene27229:intron | 25.0% |
| !! | TTTGATTTATGTGTGTGATT+AGG | + | chr8.3:29055623-29055642 | MS.gene27229:intron | 25.0% |
| !!! | TGAGTTGTTTTAGAATTCTT+AGG | + | chr8.3:29055669-29055688 | MS.gene27229:intron | 25.0% |
| ATAAAATGACCATTGGATCA+AGG | + | chr8.3:29057368-29057387 | MS.gene27229:CDS | 30.0% | |
| ATAAATTGAAGGGCAATGTT+GGG | + | chr8.3:29056659-29056678 | MS.gene27229:intron | 30.0% | |
| ATATATGACAACGATTACCA+AGG | + | chr8.3:29057103-29057122 | MS.gene27229:CDS | 30.0% | |
| ATTACAAGCTGATAGAAGAT+AGG | + | chr8.3:29057251-29057270 | MS.gene27229:CDS | 30.0% | |
| CGAAAATATGGAAAATATGC+GGG | + | chr8.3:29056071-29056090 | MS.gene27229:intron | 30.0% | |
| GTTTATTAACATGTGTGAGT+GGG | + | chr8.3:29056618-29056637 | MS.gene27229:intron | 30.0% | |
| TATAAATTGAAGGGCAATGT+TGG | + | chr8.3:29056658-29056677 | MS.gene27229:intron | 30.0% | |
| TATCAACATTATGGATATGC+CGG | + | chr8.3:29056779-29056798 | MS.gene27229:CDS | 30.0% | |
| TGGTGCATAAAGTTATAGTT+AGG | + | chr8.3:29055756-29055775 | MS.gene27229:intron | 30.0% | |
| TTACAAGCTGATAGAAGATA+GGG | + | chr8.3:29057252-29057271 | MS.gene27229:CDS | 30.0% | |
| TTCAAGGATAAAATGACCAT+TGG | + | chr8.3:29057361-29057380 | MS.gene27229:CDS | 30.0% | |
| TTTATTAACATGTGTGAGTG+GGG | + | chr8.3:29056619-29056638 | MS.gene27229:intron | 30.0% | |
| ! | ATGTAGCTTTTCCAAAATCA+CGG | + | chr8.3:29055956-29055975 | MS.gene27229:intron | 30.0% |
| !!! | AGTGGGGGATTTTTTTTTTT+GGG | + | chr8.3:29056635-29056654 | MS.gene27229:intron | 30.0% |
| AAATTTCATAGGGTTAGGCT+AGG | + | chr8.3:29055801-29055820 | MS.gene27229:intron | 35.0% | |
| AATTTCATAGGGTTAGGCTA+GGG | + | chr8.3:29055802-29055821 | MS.gene27229:intron | 35.0% | |
| ATCGGAAAGAGATGAAGTTA+AGG | - | chr8.3:29055563-29055582 | None:intergenic | 35.0% | |
| CATAAACCAATAGTGTACCA+AGG | - | chr8.3:29056474-29056493 | None:intergenic | 35.0% | |
| CCAAGACACAAACTATTAGT+TGG | - | chr8.3:29056400-29056419 | None:intergenic | 35.0% | |
| CGAAGAAAAGTAATTGATGG+TGG | + | chr8.3:29056443-29056462 | MS.gene27229:intron | 35.0% | |
| CTATGCAGAACGAGAAAAAT+CGG | - | chr8.3:29055581-29055600 | None:intergenic | 35.0% | |
| CTCAAAGAGACAAAGAATGA+TGG | + | chr8.3:29056715-29056734 | MS.gene27229:CDS | 35.0% | |
| GATTATTACAATGCTGTTGC+TGG | + | chr8.3:29057061-29057080 | MS.gene27229:CDS | 35.0% | |
| GGTTTATTAACATGTGTGAG+TGG | + | chr8.3:29056617-29056636 | MS.gene27229:intron | 35.0% | |
| GTTCAGCGATAAAGAACAAA+TGG | + | chr8.3:29057153-29057172 | MS.gene27229:CDS | 35.0% | |
| TAGGAATCGTATTCGTGTTT+GGG | + | chr8.3:29055642-29055661 | MS.gene27229:intron | 35.0% | |
| TCGGAAAGAGATGAAGTTAA+GGG | - | chr8.3:29055562-29055581 | None:intergenic | 35.0% | |
| TCTATGTCTGTGCAGTTAAA+CGG | - | chr8.3:29056860-29056879 | None:intergenic | 35.0% | |
| TGAGATTTAGTCACCAAGAA+AGG | - | chr8.3:29057211-29057230 | None:intergenic | 35.0% | |
| TGCTTTCATCCATGTGATTA+GGG | + | chr8.3:29056113-29056132 | MS.gene27229:intron | 35.0% | |
| TTAGGAATCGTATTCGTGTT+TGG | + | chr8.3:29055641-29055660 | MS.gene27229:intron | 35.0% | |
| TTATTAACATGTGTGAGTGG+GGG | + | chr8.3:29056620-29056639 | MS.gene27229:intron | 35.0% | |
| ! | CCAACTAATAGTTTGTGTCT+TGG | + | chr8.3:29056397-29056416 | MS.gene27229:intron | 35.0% |
| !! | TGGTACACTATTGGTTTATG+TGG | + | chr8.3:29056474-29056493 | MS.gene27229:intron | 35.0% |
| !!! | GACATTTTGAAGTTCTTTGC+TGG | + | chr8.3:29056878-29056897 | MS.gene27229:CDS | 35.0% |
| !!! | GAGTGGGGGATTTTTTTTTT+TGG | + | chr8.3:29056634-29056653 | MS.gene27229:intron | 35.0% |
| ACAGGCAGCTATCAACATTA+TGG | + | chr8.3:29056770-29056789 | MS.gene27229:CDS | 40.0% | |
| ACAGTAGCTCACCATGATTT+CGG | - | chr8.3:29055916-29055935 | None:intergenic | 40.0% | |
| ACTGAGATATTGAAGATGCG+TGG | + | chr8.3:29057181-29057200 | MS.gene27229:CDS | 40.0% | |
| CTAATCACATGGATGAAAGC+AGG | - | chr8.3:29056114-29056133 | None:intergenic | 40.0% | |
| CTGCTTTCATCCATGTGATT+AGG | + | chr8.3:29056112-29056131 | MS.gene27229:intron | 40.0% | |
| GTCTATCCTTGGTACACTAT+TGG | + | chr8.3:29056465-29056484 | MS.gene27229:intron | 40.0% | |
| TACACCAGATGAAGCTAGAA+GGG | + | chr8.3:29057411-29057430 | MS.gene27229:CDS | 40.0% | |
| TAGCTTCATCTGGTGTAGAA+GGG | - | chr8.3:29057408-29057427 | None:intergenic | 40.0% | |
| TTCCACATACCTTGATCCAA+TGG | - | chr8.3:29057380-29057399 | None:intergenic | 40.0% | |
| TTCTTTATCGCTGAACCTCT+TGG | - | chr8.3:29057149-29057168 | None:intergenic | 40.0% | |
| ! | ATCAGGAAAACATGGGTTGT+GGG | + | chr8.3:29056591-29056610 | MS.gene27229:intron | 40.0% |
| ! | CTGTAGCTTTACCGAAATCA+TGG | + | chr8.3:29055902-29055921 | MS.gene27229:intron | 40.0% |
| ! | GCAGATATGTGGAAGTTTTC+AGG | + | chr8.3:29057026-29057045 | MS.gene27229:CDS | 40.0% |
| ! | TAGCTTTTCCAAAATCACGG+CGG | + | chr8.3:29055959-29055978 | MS.gene27229:intron | 40.0% |
| ! | TATCAGGAAAACATGGGTTG+TGG | + | chr8.3:29056590-29056609 | MS.gene27229:intron | 40.0% |
| ! | TTTTCCTGTGGTTCGTCTAA+GGG | + | chr8.3:29056829-29056848 | MS.gene27229:CDS | 40.0% |
| ! | TTTTGCTTGTGTGCTCTGTT+TGG | + | chr8.3:29056366-29056385 | MS.gene27229:intron | 40.0% |
| !! | AATTGATGGTGGTCTATCCT+TGG | + | chr8.3:29056454-29056473 | MS.gene27229:intron | 40.0% |
| !! | AGCTTTGTTAGTCTGGTGTT+AGG | + | chr8.3:29056281-29056300 | MS.gene27229:intron | 40.0% |
| !!! | AGTTTTCAGGTGTAAGAAGC+AGG | + | chr8.3:29057039-29057058 | MS.gene27229:CDS | 40.0% |
| ACAGAGAGATCGACAGAACA+TGG | + | chr8.3:29057000-29057019 | MS.gene27229:CDS | 45.0% | |
| AGATGGTAAAGCTACAGGAG+AGG | + | chr8.3:29057294-29057313 | MS.gene27229:CDS | 45.0% | |
| ATACCAACGCGCACTATATC+AGG | - | chr8.3:29055880-29055899 | None:intergenic | 45.0% | |
| ATTGCTCTCTTTGCCTCATC+TGG | - | chr8.3:29057340-29057359 | None:intergenic | 45.0% | |
| CAACATTATGGATATGCCGG+TGG | + | chr8.3:29056782-29056801 | MS.gene27229:CDS | 45.0% | |
| CAGAGAGATCGACAGAACAT+GGG | + | chr8.3:29057001-29057020 | MS.gene27229:CDS | 45.0% | |
| CCAGACTAACAAAGCTCAGA+AGG | - | chr8.3:29056277-29056296 | None:intergenic | 45.0% | |
| CTACACCAGATGAAGCTAGA+AGG | + | chr8.3:29057410-29057429 | MS.gene27229:CDS | 45.0% | |
| CTAGCTTCATCTGGTGTAGA+AGG | - | chr8.3:29057409-29057428 | None:intergenic | 45.0% | |
| CTTAGACGAACCACAGGAAA+AGG | - | chr8.3:29056830-29056849 | None:intergenic | 45.0% | |
| GACCAGTAACACATCGACAA+TGG | - | chr8.3:29056909-29056928 | None:intergenic | 45.0% | |
| GACCATTGGATCAAGGTATG+TGG | + | chr8.3:29057375-29057394 | MS.gene27229:CDS | 45.0% | |
| GACCATTGTCGATGTGTTAC+TGG | + | chr8.3:29056904-29056923 | MS.gene27229:CDS | 45.0% | |
| GCTGGTGAGATCAATTACGA+AGG | + | chr8.3:29057079-29057098 | MS.gene27229:CDS | 45.0% | |
| GGCAAAGAGAGCAATGTTCA+AGG | + | chr8.3:29057345-29057364 | MS.gene27229:CDS | 45.0% | |
| TACCAACGCGCACTATATCA+GGG | - | chr8.3:29055879-29055898 | None:intergenic | 45.0% | |
| TACTGGTCAACAAGAGTGGA+CGG | + | chr8.3:29056921-29056940 | MS.gene27229:CDS | 45.0% | |
| TCACTGCCTTGATCTTGACT+CGG | - | chr8.3:29057437-29057456 | None:intergenic | 45.0% | |
| TCCATGTGATTAGGGTCAGT+AGG | + | chr8.3:29056121-29056140 | MS.gene27229:intron | 45.0% | |
| TGCTCCTGCAAAGACTACAA+AGG | - | chr8.3:29056960-29056979 | None:intergenic | 45.0% | |
| TTTCCTGTGGTTCGTCTAAG+GGG | + | chr8.3:29056830-29056849 | MS.gene27229:CDS | 45.0% | |
| ! | ACAGTAAACCGCCGTGATTT+TGG | - | chr8.3:29055970-29055989 | None:intergenic | 45.0% |
| ! | AGAGTTTGTTTCGCCAGATG+AGG | + | chr8.3:29057324-29057343 | MS.gene27229:CDS | 45.0% |
| ! | CTCCTGTAGCTTTACCATCT+GGG | - | chr8.3:29057294-29057313 | None:intergenic | 45.0% |
| ! | CTTTTCCTGTGGTTCGTCTA+AGG | + | chr8.3:29056828-29056847 | MS.gene27229:CDS | 45.0% |
| ! | GAAAACATGGGTTGTGGGTT+TGG | + | chr8.3:29056596-29056615 | MS.gene27229:intron | 45.0% |
| ! | GTGTTACTGGTCAACAAGAG+TGG | + | chr8.3:29056917-29056936 | MS.gene27229:CDS | 45.0% |
| ! | TCTCCTGTAGCTTTACCATC+TGG | - | chr8.3:29057295-29057314 | None:intergenic | 45.0% |
| !! | CCTTCTGAGCTTTGTTAGTC+TGG | + | chr8.3:29056274-29056293 | MS.gene27229:intron | 45.0% |
| AACAAGAGTGGACGGTTCTC+TGG | + | chr8.3:29056929-29056948 | MS.gene27229:CDS | 50.0% | |
| AACCACAGGAAAAGGAGGAG+GGG | - | chr8.3:29056822-29056841 | None:intergenic | 50.0% | |
| AGACGAACCACAGGAAAAGG+AGG | - | chr8.3:29056827-29056846 | None:intergenic | 50.0% | |
| AGCGACGGAGGATAACGATA+CGG | - | chr8.3:29055472-29055491 | None:intergenic | 50.0% | |
| AGTCTTTGCAGGAGCAATGC+AGG | + | chr8.3:29056964-29056983 | MS.gene27229:CDS | 50.0% | |
| AGTTAAGGGAACATACCCCC+TGG | - | chr8.3:29055548-29055567 | None:intergenic | 50.0% | |
| ATCGGCATAGGAACGGGAAA+AGG | - | chr8.3:29055503-29055522 | None:intergenic | 50.0% | |
| CATTATGGATATGCCGGTGG+TGG | + | chr8.3:29056785-29056804 | MS.gene27229:CDS | 50.0% | |
| CGCGCACTATATCAGGGTAT+AGG | - | chr8.3:29055873-29055892 | None:intergenic | 50.0% | |
| GAACATGGGTCGCAGATATG+TGG | + | chr8.3:29057015-29057034 | MS.gene27229:CDS | 50.0% | |
| GAACCACAGGAAAAGGAGGA+GGG | - | chr8.3:29056823-29056842 | None:intergenic | 50.0% | |
| GAGGCCTTTGTAGTCTTTGC+AGG | + | chr8.3:29056953-29056972 | MS.gene27229:CDS | 50.0% | |
| GATGCGTGGACTTCCTTTCT+TGG | + | chr8.3:29057195-29057214 | MS.gene27229:CDS | 50.0% | |
| GCCTACTGACCCTAATCACA+TGG | - | chr8.3:29056125-29056144 | None:intergenic | 50.0% | |
| GCTCACTGCGAAGTATGGAT+TGG | - | chr8.3:29056744-29056763 | None:intergenic | 50.0% | |
| GTTAAGGGAACATACCCCCT+GGG | - | chr8.3:29055547-29055566 | None:intergenic | 50.0% | |
| TACCCTGATATAGTGCGCGT+TGG | + | chr8.3:29055874-29055893 | MS.gene27229:intron | 50.0% | |
| TCGGCATAGGAACGGGAAAA+GGG | - | chr8.3:29055502-29055521 | None:intergenic | 50.0% | |
| TGAAGGGCAATGTTGGGAAG+CGG | + | chr8.3:29056665-29056684 | MS.gene27229:intron | 50.0% | |
| TTCCACGATCGGCATAGGAA+CGG | - | chr8.3:29055510-29055529 | None:intergenic | 50.0% | |
| TTCCTGTGGTTCGTCTAAGG+GGG | + | chr8.3:29056831-29056850 | MS.gene27229:CDS | 50.0% | |
| AAGGGCAATGTTGGGAAGCG+GGG | + | chr8.3:29056667-29056686 | MS.gene27229:intron | 55.0% | |
| ACCACAGGAAAAGGAGGAGG+GGG | - | chr8.3:29056821-29056840 | None:intergenic | 55.0% | |
| ATCGCTGAACCTCTTGGACC+TGG | - | chr8.3:29057143-29057162 | None:intergenic | 55.0% | |
| CACATTGCATGTCGCCCAGA+TGG | + | chr8.3:29057277-29057296 | MS.gene27229:CDS | 55.0% | |
| CCATACTTCGCAGTGAGCAG+CGG | + | chr8.3:29056746-29056765 | MS.gene27229:CDS | 55.0% | |
| CGAACCACAGGAAAAGGAGG+AGG | - | chr8.3:29056824-29056843 | None:intergenic | 55.0% | |
| CGCCCAGATGGTAAAGCTAC+AGG | + | chr8.3:29057289-29057308 | MS.gene27229:CDS | 55.0% | |
| CGGCATAGGAACGGGAAAAG+GGG | - | chr8.3:29055501-29055520 | None:intergenic | 55.0% | |
| CTGAACCTCTTGGACCTGGA+GGG | - | chr8.3:29057139-29057158 | None:intergenic | 55.0% | |
| GAAAAGGGGGAATCGAGCGA+CGG | - | chr8.3:29055487-29055506 | None:intergenic | 55.0% | |
| GAAGGGCAATGTTGGGAAGC+GGG | + | chr8.3:29056666-29056685 | MS.gene27229:intron | 55.0% | |
| GAAGGGCCGAGTCAAGATCA+AGG | + | chr8.3:29057428-29057447 | MS.gene27229:CDS | 55.0% | |
| GATGGTTCCACGATCGGCAT+AGG | - | chr8.3:29055515-29055534 | None:intergenic | 55.0% | |
| GCCGATCGTGGAACCATCTA+CGG | + | chr8.3:29055517-29055536 | MS.gene27229:CDS | 55.0% | |
| GCCGTAGATGGTTCCACGAT+CGG | - | chr8.3:29055521-29055540 | None:intergenic | 55.0% | |
| GGCATAGGAACGGGAAAAGG+GGG | - | chr8.3:29055500-29055519 | None:intergenic | 55.0% | |
| TCCACGATCGGCATAGGAAC+GGG | - | chr8.3:29055509-29055528 | None:intergenic | 55.0% | |
| ! | TATGGATATGCCGGTGGTGG+CGG | + | chr8.3:29056788-29056807 | MS.gene27229:CDS | 55.0% |
| !! | TCGGCCCTTCTAGCTTCATC+TGG | - | chr8.3:29057418-29057437 | None:intergenic | 55.0% |
| AACCATCTACGGCGCTCCCA+GGG | + | chr8.3:29055528-29055547 | MS.gene27229:CDS | 60.0% | |
| AACCTCTTGGACCTGGAGGG+AGG | - | chr8.3:29057136-29057155 | None:intergenic | 60.0% | |
| AGCCCCCTTAGACGAACCAC+AGG | - | chr8.3:29056836-29056855 | None:intergenic | 60.0% | |
| AGGGCAATGTTGGGAAGCGG+GGG | + | chr8.3:29056668-29056687 | MS.gene27229:intron | 60.0% | |
| CCGCTGCTCACTGCGAAGTA+TGG | - | chr8.3:29056749-29056768 | None:intergenic | 60.0% | |
| GCTGAACCTCTTGGACCTGG+AGG | - | chr8.3:29057140-29057159 | None:intergenic | 60.0% | |
| GTTTCGGACGGGTACGAGGT+TGG | + | chr8.3:29056692-29056711 | MS.gene27229:CDS | 60.0% | |
| TCCCGTTCCTATGCCGATCG+TGG | + | chr8.3:29055505-29055524 | MS.gene27229:CDS | 60.0% | |
| TCTTGGACCTGGAGGGAGGA+GGG | - | chr8.3:29057132-29057151 | None:intergenic | 60.0% | |
| TTCGCAGTGAGCAGCGGAAC+AGG | + | chr8.3:29056752-29056771 | MS.gene27229:CDS | 60.0% | |
| ! | GAGTGGACGGTTCTCTGGAG+AGG | + | chr8.3:29056934-29056953 | MS.gene27229:CDS | 60.0% |
| AAGGAAGCCCTCCTCCCTCC+AGG | + | chr8.3:29057122-29057141 | MS.gene27229:CDS | 65.0% | |
| AAGGGGGAATCGAGCGACGG+AGG | - | chr8.3:29055484-29055503 | None:intergenic | 65.0% | |
| ACCATCTACGGCGCTCCCAG+GGG | + | chr8.3:29055529-29055548 | MS.gene27229:CDS | 65.0% | |
| CAGGAAAAGGAGGAGGGGGC+TGG | - | chr8.3:29056817-29056836 | None:intergenic | 65.0% | |
| CTCCTCCCTCCAGGTCCAAG+AGG | + | chr8.3:29057131-29057150 | MS.gene27229:CDS | 65.0% | |
| CTCTTGGACCTGGAGGGAGG+AGG | - | chr8.3:29057133-29057152 | None:intergenic | 65.0% | |
| GAACCATCTACGGCGCTCCC+AGG | + | chr8.3:29055527-29055546 | MS.gene27229:CDS | 65.0% | |
| GGCAATGTTGGGAAGCGGGG+GGG | + | chr8.3:29056670-29056689 | MS.gene27229:CDS | 65.0% | |
| GGGCAATGTTGGGAAGCGGG+GGG | + | chr8.3:29056669-29056688 | MS.gene27229:intron | 65.0% | |
| GTTGGGAAGCGGGGGGGTTT+CGG | + | chr8.3:29056676-29056695 | MS.gene27229:CDS | 65.0% | |
| TGGAGGGAGGAGGGCTTCCT+TGG | - | chr8.3:29057123-29057142 | None:intergenic | 65.0% | |
| ! | GCCCCCTCCTCCTTTTCCTG+TGG | + | chr8.3:29056817-29056836 | MS.gene27229:CDS | 65.0% |
| CCATCTACGGCGCTCCCAGG+GGG | + | chr8.3:29055530-29055549 | MS.gene27229:CDS | 70.0% | |
| GAAGCGGGGGGGTTTCGGAC+GGG | + | chr8.3:29056681-29056700 | MS.gene27229:CDS | 70.0% | |
| GGAAGCGGGGGGGTTTCGGA+CGG | + | chr8.3:29056680-29056699 | MS.gene27229:CDS | 70.0% | |
| GGGGGTTTCGGACGGGTACG+AGG | + | chr8.3:29056688-29056707 | MS.gene27229:CDS | 70.0% | |
| GGGCTGGAAGCCGCCACCAC+CGG | - | chr8.3:29056801-29056820 | None:intergenic | 75.0% | |
| !! | CCCCCTGGGAGCGCCGTAGA+TGG | - | chr8.3:29055533-29055552 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 29055463 | 29057456 | 29055463 | ID=MS.gene27229 |
| chr8.3 | mRNA | 29055463 | 29057456 | 29055463 | ID=MS.gene27229.t1;Parent=MS.gene27229 |
| chr8.3 | exon | 29055463 | 29055551 | 29055463 | ID=MS.gene27229.t1.exon1;Parent=MS.gene27229.t1 |
| chr8.3 | CDS | 29055463 | 29055551 | 29055463 | ID=cds.MS.gene27229.t1;Parent=MS.gene27229.t1 |
| chr8.3 | exon | 29056670 | 29057456 | 29056670 | ID=MS.gene27229.t1.exon2;Parent=MS.gene27229.t1 |
| chr8.3 | CDS | 29056670 | 29057456 | 29056670 | ID=cds.MS.gene27229.t1;Parent=MS.gene27229.t1 |
| Gene Sequence |
| Protein sequence |
