Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030226.t1 | XP_003609937.1 | 99.7 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 6.70E-186 | 659.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030226.t1 | Q40134 | 88.3 | 342 | 39 | 1 | 1 | 341 | 1 | 342 | 4.9e-169 | 595.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030226.t1 | G7JS36 | 99.7 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 4.8e-186 | 659.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030226 | MS.gene56256 | PPI |
| MS.gene030226 | MS.gene049599 | PPI |
| MS.gene030226 | MS.gene008431 | PPI |
| MS.gene030226 | MS.gene53875 | PPI |
| MS.gene030226 | MS.gene05119 | PPI |
| MS.gene030226 | MS.gene63514 | PPI |
| MS.gene51627 | MS.gene030226 | PPI |
| MS.gene009458 | MS.gene030226 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030226.t1 | MTR_4g124560 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
| MS.gene030226.t1 | MTR_1g102670 | 51.746 | 315 | 138 | 2 | 27 | 341 | 11 | 311 | 4.67e-106 | 313 |
| MS.gene030226.t1 | MTR_4g111780 | 30.723 | 332 | 185 | 9 | 42 | 338 | 15 | 336 | 1.66e-30 | 119 |
| MS.gene030226.t1 | MTR_4g024850 | 30.723 | 332 | 185 | 9 | 42 | 338 | 15 | 336 | 4.60e-30 | 117 |
| MS.gene030226.t1 | MTR_2g445230 | 28.938 | 273 | 166 | 7 | 93 | 340 | 11 | 280 | 1.01e-20 | 90.9 |
| MS.gene030226.t1 | MTR_2g093050 | 29.119 | 261 | 151 | 7 | 103 | 336 | 83 | 336 | 6.02e-19 | 87.8 |
| MS.gene030226.t1 | MTR_5g091610 | 41.322 | 121 | 50 | 3 | 169 | 277 | 6 | 117 | 4.47e-17 | 80.5 |
| MS.gene030226.t1 | MTR_4g062540 | 27.386 | 241 | 143 | 8 | 104 | 327 | 89 | 314 | 2.20e-14 | 73.2 |
| MS.gene030226.t1 | MTR_4g062540 | 26.923 | 234 | 146 | 6 | 104 | 327 | 89 | 307 | 3.52e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030226.t1 | AT5G20850 | 87.683 | 341 | 40 | 1 | 1 | 341 | 4 | 342 | 0.0 | 624 |
| MS.gene030226.t1 | AT5G20850 | 88.040 | 301 | 34 | 1 | 1 | 301 | 4 | 302 | 0.0 | 557 |
| MS.gene030226.t1 | AT3G22880 | 53.651 | 315 | 145 | 1 | 27 | 341 | 31 | 344 | 3.56e-116 | 340 |
| MS.gene030226.t1 | AT3G22880 | 53.821 | 301 | 138 | 1 | 27 | 327 | 31 | 330 | 6.28e-111 | 326 |
| MS.gene030226.t1 | AT2G45280 | 31.000 | 300 | 169 | 7 | 42 | 312 | 36 | 326 | 1.21e-25 | 105 |
| MS.gene030226.t1 | AT2G45280 | 32.661 | 248 | 136 | 6 | 87 | 312 | 112 | 350 | 3.46e-25 | 105 |
| MS.gene030226.t1 | AT5G57450 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.57e-24 | 100 |
| MS.gene030226.t1 | AT5G57450 | 27.465 | 284 | 160 | 6 | 103 | 340 | 20 | 303 | 4.57e-24 | 100 |
| MS.gene030226.t1 | AT2G28560 | 29.057 | 265 | 156 | 7 | 103 | 341 | 51 | 309 | 2.35e-20 | 90.9 |
| MS.gene030226.t1 | AT2G28560 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 3.73e-20 | 90.5 |
| MS.gene030226.t1 | AT2G28560 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.11e-20 | 90.5 |
| MS.gene030226.t1 | AT2G28560 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.11e-20 | 90.5 |
| MS.gene030226.t1 | AT2G28560 | 29.057 | 265 | 156 | 7 | 103 | 341 | 83 | 341 | 4.11e-20 | 90.5 |
| MS.gene030226.t1 | AT2G28560 | 30.556 | 180 | 113 | 4 | 103 | 274 | 51 | 226 | 1.11e-15 | 75.9 |
| MS.gene030226.t1 | AT1G07745 | 25.941 | 239 | 154 | 6 | 76 | 306 | 64 | 287 | 1.05e-12 | 68.6 |
| MS.gene030226.t1 | AT1G07745 | 25.941 | 239 | 154 | 6 | 76 | 306 | 46 | 269 | 1.47e-12 | 67.8 |
Find 82 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAATCTCTTCGGTTTCT+TGG | 0.161205 | 8.2:-8678306 | None:intergenic |
| GCCACCAATTGGCTTGGTTT+GGG | 0.257944 | 8.2:-8680940 | None:intergenic |
| GCCAATTGGTGGCAACATTA+TGG | 0.293831 | 8.2:+8680950 | MS.gene030226:CDS |
| GGCTGAAAGCTCCCCTCTTC+CGG | 0.313600 | 8.2:-8680584 | None:intergenic |
| AGTGATTAGTTCTCCTTGTT+TGG | 0.313602 | 8.2:+8681034 | MS.gene030226:CDS |
| TGCCACCAATTGGCTTGGTT+TGG | 0.332160 | 8.2:-8680941 | None:intergenic |
| AGCTGGTAAGCTGGTGCCTA+TGG | 0.346402 | 8.2:+8679185 | MS.gene030226:intron |
| CGTCAACTTGTGAAACTACT+TGG | 0.353913 | 8.2:-8680896 | None:intergenic |
| GACGGTTCTGCAATGTTTGC+TGG | 0.369464 | 8.2:+8680915 | MS.gene030226:CDS |
| CTAATTTCTGAAGGCTTCTC+AGG | 0.371141 | 8.2:-8680630 | None:intergenic |
| ATTTCGCTAAATGCATTTGC+CGG | 0.371203 | 8.2:-8680606 | None:intergenic |
| AAGAGAGCTTGACAAGATAT+TGG | 0.386237 | 8.2:+8679272 | MS.gene030226:CDS |
| TTTACCCGTAGAACAACTTC+AGG | 0.397476 | 8.2:+8678336 | MS.gene030226:CDS |
| GCCATAATGTTGCCACCAAT+TGG | 0.411385 | 8.2:-8680951 | None:intergenic |
| CTCAAGTCGTTGTTGCTCCA+TGG | 0.416061 | 8.2:-8678263 | None:intergenic |
| TTGTATGGTGAATTTCGATC+TGG | 0.418493 | 8.2:+8679433 | MS.gene030226:CDS |
| TAATTGTATTCTCAGGCATC+GGG | 0.449868 | 8.2:+8678528 | MS.gene030226:intron |
| TACGACAGGTTTGGACTGAA+TGG | 0.457584 | 8.2:+8680146 | MS.gene030226:intron |
| CCACCAATTGGCTTGGTTTG+GGG | 0.463690 | 8.2:-8680939 | None:intergenic |
| CAATCAGGTGGAATTGAGAC+GGG | 0.472160 | 8.2:+8679397 | MS.gene030226:intron |
| ACTGAATGGTCCTGATGTAT+TGG | 0.472714 | 8.2:+8680160 | MS.gene030226:CDS |
| AATCTGTTGCTTATACTCCT+AGG | 0.488123 | 8.2:+8678604 | MS.gene030226:CDS |
| GGTTCTATCACCGAGTTGTA+TGG | 0.488506 | 8.2:+8679418 | MS.gene030226:CDS |
| ACAGTGCTACTGCTCTCTAT+AGG | 0.490455 | 8.2:+8680551 | MS.gene030226:CDS |
| GGACCCCAAACCAAGCCAAT+TGG | 0.494568 | 8.2:+8680936 | MS.gene030226:CDS |
| CCACGACAAGGTTAGCTCTC+AGG | 0.496287 | 8.2:+8680982 | MS.gene030226:CDS |
| ATTAAGAAGCTTAAAGATGC+AGG | 0.498423 | 8.2:+8678567 | MS.gene030226:CDS |
| TAAAATCTGAAACCTTGCTT+CGG | 0.499109 | 8.2:-8681063 | None:intergenic |
| TTTATTGACAGCTGGTAAGC+TGG | 0.500060 | 8.2:+8679176 | MS.gene030226:intron |
| AATGTTGCCACCAATTGGCT+TGG | 0.501653 | 8.2:-8680946 | None:intergenic |
| ATTTGCAAAAGATCTTTCCT+AGG | 0.502674 | 8.2:-8678621 | None:intergenic |
| TTCAATGATCTTGTCAACCT+TGG | 0.504239 | 8.2:-8678661 | None:intergenic |
| TGAAGTTGTTCTACGGGTAA+AGG | 0.508750 | 8.2:-8678334 | None:intergenic |
| AGGACCGTGTTGAATCTCTT+CGG | 0.510828 | 8.2:-8678314 | None:intergenic |
| CCTCATCTGCTAATTTCTGA+AGG | 0.511857 | 8.2:-8680639 | None:intergenic |
| ATTAACCTGAAGTTGTTCTA+CGG | 0.512949 | 8.2:-8678341 | None:intergenic |
| GCTGGTAAGCTGGTGCCTAT+GGG | 0.516629 | 8.2:+8679186 | MS.gene030226:intron |
| CAAGTAGTTTCACAAGTTGA+CGG | 0.519262 | 8.2:+8680897 | MS.gene030226:CDS |
| TAGATGCCGAGGGAACATTT+AGG | 0.520366 | 8.2:+8680022 | MS.gene030226:CDS |
| TTAACCTGAAGTTGTTCTAC+GGG | 0.520860 | 8.2:-8678340 | None:intergenic |
| ACTTGAAGCAGCTTCAATGA+TGG | 0.525271 | 8.2:+8680235 | MS.gene030226:CDS |
| TTTCGCTAAATGCATTTGCC+GGG | 0.529004 | 8.2:-8680605 | None:intergenic |
| CCCCAAACCAAGCCAATTGG+TGG | 0.539489 | 8.2:+8680939 | MS.gene030226:CDS |
| CTTGTCAAGCTCTCTTGACC+CGG | 0.542171 | 8.2:-8679265 | None:intergenic |
| CTTCAATGATGGTGGAAACA+AGG | 0.543376 | 8.2:+8680246 | MS.gene030226:CDS |
| TTAGCTCTCAGGAAAGGAAG+AGG | 0.549474 | 8.2:+8680993 | MS.gene030226:CDS |
| TTGTAGTTGCCACTAGATCA+AGG | 0.550547 | 8.2:+8679973 | MS.gene030226:intron |
| TCAATCAGGTGGAATTGAGA+CGG | 0.551223 | 8.2:+8679396 | MS.gene030226:intron |
| TCGATTATTCAGATAACCAC+CGG | 0.554130 | 8.2:+8679246 | MS.gene030226:CDS |
| GCTTCGGCTTCAGCCAAACA+AGG | 0.555538 | 8.2:-8681047 | None:intergenic |
| TGTGTAATTGTAGTTTGGTG+TGG | 0.558015 | 8.2:+8680857 | MS.gene030226:intron |
| CAAAGGTATCAGTGATGCCA+AGG | 0.558029 | 8.2:+8678644 | MS.gene030226:CDS |
| TCACCTCCTCCTTGATCTAG+TGG | 0.567569 | 8.2:-8679982 | None:intergenic |
| CTAGATCAAGGAGGAGGTGA+GGG | 0.569563 | 8.2:+8679985 | MS.gene030226:CDS |
| CCTTCAGAAATTAGCAGATG+AGG | 0.570316 | 8.2:+8680639 | MS.gene030226:CDS |
| GAAGAGGGGAGCTTTCAGCC+CGG | 0.571563 | 8.2:+8680587 | MS.gene030226:CDS |
| TAGCTCTCAGGAAAGGAAGA+GGG | 0.571645 | 8.2:+8680994 | MS.gene030226:CDS |
| CCTGAGAGCTAACCTTGTCG+TGG | 0.573304 | 8.2:-8680982 | None:intergenic |
| GTTGACAAGATCATTGAAGC+AGG | 0.573756 | 8.2:+8678666 | MS.gene030226:CDS |
| GAGCTTGACAAGATATTGGA+AGG | 0.575499 | 8.2:+8679276 | MS.gene030226:CDS |
| AGCTATGTACATAGATGCCG+AGG | 0.576766 | 8.2:+8680011 | MS.gene030226:CDS |
| TGTATGGTGAATTTCGATCT+GGG | 0.581170 | 8.2:+8679434 | MS.gene030226:CDS |
| GACTCTTACAGATAGCAGAT+AGG | 0.586304 | 8.2:+8680052 | MS.gene030226:CDS |
| GTTTGGCTGAAGCCGAAGCA+AGG | 0.588117 | 8.2:+8681051 | MS.gene030226:CDS |
| TGAAGCAGCTTCAATGATGG+TGG | 0.599232 | 8.2:+8680238 | MS.gene030226:CDS |
| CTGAGGCCTAAATGTTCCCT+CGG | 0.602051 | 8.2:-8680028 | None:intergenic |
| AGTATAAGCAACAGATTCAA+CGG | 0.607715 | 8.2:-8678598 | None:intergenic |
| GTCAAGCTCTCTTGACCCGG+TGG | 0.607993 | 8.2:-8679262 | None:intergenic |
| ACAAGGTTAGCTCTCAGGAA+AGG | 0.614598 | 8.2:+8680987 | MS.gene030226:CDS |
| TTCTCAGGCATCGGGTATAG+CGG | 0.620888 | 8.2:+8678536 | MS.gene030226:intron |
| TTGCCACTAGATCAAGGAGG+AGG | 0.623636 | 8.2:+8679979 | MS.gene030226:CDS |
| AGCTCTCAGGAAAGGAAGAG+GGG | 0.625477 | 8.2:+8680995 | MS.gene030226:CDS |
| ACTAGATCAAGGAGGAGGTG+AGG | 0.625647 | 8.2:+8679984 | MS.gene030226:CDS |
| CGATTATTCAGATAACCACC+GGG | 0.640229 | 8.2:+8679247 | MS.gene030226:CDS |
| CTAGCGCTAGTAAAACCCAT+AGG | 0.648850 | 8.2:-8679201 | None:intergenic |
| TCGAAATTCACCATACAACT+CGG | 0.653941 | 8.2:-8679428 | None:intergenic |
| TGGCTCATGCAACCACGACA+AGG | 0.656550 | 8.2:+8680970 | MS.gene030226:CDS |
| ATAACACTGATCATCAGTCA+CGG | 0.679517 | 8.2:+8680207 | MS.gene030226:CDS |
| GCTATGTACATAGATGCCGA+GGG | 0.713210 | 8.2:+8680012 | MS.gene030226:CDS |
| GCTATCTGTAAGAGTCGCTG+AGG | 0.720598 | 8.2:-8680045 | None:intergenic |
| GAAACCGAAGAGATTCAACA+CGG | 0.755894 | 8.2:+8678310 | MS.gene030226:CDS |
| TAGTTGCCACTAGATCAAGG+AGG | 0.810196 | 8.2:+8679976 | MS.gene030226:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAATTAGAAATAAT+GGG | - | chr8.2:8678409-8678428 | None:intergenic | 10.0% |
| !! | TAAAAAGAAATTAGAAATAA+TGG | - | chr8.2:8678410-8678429 | None:intergenic | 10.0% |
| !!! | ATTATTTCTAATTTCTTTTT+AGG | + | chr8.2:8678409-8678428 | MS.gene030226:intron | 10.0% |
| !! | AAAATAACTAAAATAGTCCA+GGG | + | chr8.2:8679780-8679799 | MS.gene030226:intron | 20.0% |
| !! | ACATATAAACATAATCAGTT+TGG | + | chr8.2:8680814-8680833 | MS.gene030226:intron | 20.0% |
| !! | ATAACCACTTATATGATAAA+TGG | + | chr8.2:8679031-8679050 | MS.gene030226:intron | 20.0% |
| !! | ATAACCATTTATCATATAAG+TGG | - | chr8.2:8679038-8679057 | None:intergenic | 20.0% |
| !! | GTTTGAGTATTTGTATATAT+AGG | + | chr8.2:8679594-8679613 | MS.gene030226:intron | 20.0% |
| !! | TAAGGAACATAAATATTGAA+TGG | - | chr8.2:8680125-8680144 | None:intergenic | 20.0% |
| !!! | AGATATTGAAATTGTTTTTG+AGG | + | chr8.2:8680482-8680501 | MS.gene030226:intron | 20.0% |
| !!! | AGATTTTTTTATACTAGTGA+TGG | + | chr8.2:8680433-8680452 | MS.gene030226:intron | 20.0% |
| !!! | ATAAATACTTTGTTTATGTG+TGG | + | chr8.2:8679313-8679332 | MS.gene030226:intron | 20.0% |
| !!! | TAAATACTTTGTTTATGTGT+GGG | + | chr8.2:8679314-8679333 | MS.gene030226:intron | 20.0% |
| !!! | TCACTTTCAATTTTGTTTTA+GGG | + | chr8.2:8678700-8678719 | MS.gene030226:intron | 20.0% |
| !!! | TTCACTTTCAATTTTGTTTT+AGG | + | chr8.2:8678699-8678718 | MS.gene030226:intron | 20.0% |
| !!! | TTTTAATAAGCTCTTTAGAA+TGG | + | chr8.2:8678955-8678974 | MS.gene030226:intron | 20.0% |
| ! | AAATAACTAAAATAGTCCAG+GGG | + | chr8.2:8679781-8679800 | MS.gene030226:intron | 25.0% |
| ! | AACAACGATAATAGTCAATT+GGG | - | chr8.2:8678491-8678510 | None:intergenic | 25.0% |
| ! | AATTACATGAATTGAGTGTT+TGG | - | chr8.2:8679089-8679108 | None:intergenic | 25.0% |
| ! | AATTACTAGGCAATGTTATT+AGG | - | chr8.2:8679937-8679956 | None:intergenic | 25.0% |
| ! | ATAAAGCCATATTATAACCT+TGG | - | chr8.2:8680323-8680342 | None:intergenic | 25.0% |
| ! | CAAAATAACTAAAATAGTCC+AGG | + | chr8.2:8679779-8679798 | MS.gene030226:intron | 25.0% |
| ! | GATTAACATAATCAATTGTG+AGG | + | chr8.2:8678887-8678906 | MS.gene030226:intron | 25.0% |
| ! | TGTATATATAGGAGAATACA+AGG | + | chr8.2:8679605-8679624 | MS.gene030226:intron | 25.0% |
| ! | TTGAGAAAATAAGACAGAAT+AGG | - | chr8.2:8679721-8679740 | None:intergenic | 25.0% |
| ! | TTGATTGTGTAATTGTAGTT+TGG | + | chr8.2:8680852-8680871 | MS.gene030226:intron | 25.0% |
| ! | TTGCTTAGGATAGTAAATTT+AGG | + | chr8.2:8680767-8680786 | MS.gene030226:intron | 25.0% |
| !! | AAACAACATAAGTTCTTTTC+AGG | + | chr8.2:8678839-8678858 | MS.gene030226:intron | 25.0% |
| !! | AAAGATCTTTTGCAAATCAA+AGG | + | chr8.2:8678627-8678646 | MS.gene030226:CDS | 25.0% |
| !! | AACAACATAAGTTCTTTTCA+GGG | + | chr8.2:8678840-8678859 | MS.gene030226:intron | 25.0% |
| !! | AAGTGCTTTATTAAGTTGTT+TGG | + | chr8.2:8679063-8679082 | MS.gene030226:intron | 25.0% |
| !! | CTAAGTTGAAAAAAGCTTAT+TGG | - | chr8.2:8678803-8678822 | None:intergenic | 25.0% |
| !!! | AAGCTTTTTTCAACTTAGTA+GGG | + | chr8.2:8678805-8678824 | MS.gene030226:intron | 25.0% |
| !!! | ACTTATGTTGTTTTCATGTA+AGG | - | chr8.2:8678832-8678851 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTAGGGTCTATT+TGG | + | chr8.2:8678709-8678728 | MS.gene030226:intron | 25.0% |
| !!! | CTGGACTATTTTAGTTATTT+TGG | - | chr8.2:8679781-8679800 | None:intergenic | 25.0% |
| !!! | TAAGCTTTTTTCAACTTAGT+AGG | + | chr8.2:8678804-8678823 | MS.gene030226:intron | 25.0% |
| !!! | TACAGTTCATTCAAGTTTTT+GGG | + | chr8.2:8679753-8679772 | MS.gene030226:intron | 25.0% |
| !!! | TATATATTGCTGTTTCAATC+AGG | + | chr8.2:8679382-8679401 | MS.gene030226:intron | 25.0% |
| !!! | TTACAGTTCATTCAAGTTTT+TGG | + | chr8.2:8679752-8679771 | MS.gene030226:intron | 25.0% |
| !!! | TTTTTTGCACTTTGAACAAT+CGG | - | chr8.2:8678440-8678459 | None:intergenic | 25.0% |
| AAATCTTACAATACAACGCA+AGG | - | chr8.2:8680419-8680438 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr8.2:8678937-8678956 | None:intergenic | 30.0% | |
| AATGGACATTTAACAGAAAC+AGG | - | chr8.2:8680107-8680126 | None:intergenic | 30.0% | |
| AGCTGATTAAGATATTGCTT+AGG | + | chr8.2:8680753-8680772 | MS.gene030226:intron | 30.0% | |
| AGTATAAGCAACAGATTCAA+CGG | - | chr8.2:8678601-8678620 | None:intergenic | 30.0% | |
| ATTAACCTGAAGTTGTTCTA+CGG | - | chr8.2:8678344-8678363 | None:intergenic | 30.0% | |
| ATTAAGAAGCTTAAAGATGC+AGG | + | chr8.2:8678567-8678586 | MS.gene030226:CDS | 30.0% | |
| ATTGTAGAAGAGGAAATTCT+TGG | + | chr8.2:8679680-8679699 | MS.gene030226:intron | 30.0% | |
| ATTTGCAAAAGATCTTTCCT+AGG | - | chr8.2:8678624-8678643 | None:intergenic | 30.0% | |
| CAAACAGAGCCTAAAAATAA+AGG | - | chr8.2:8678867-8678886 | None:intergenic | 30.0% | |
| CAACAACGATAATAGTCAAT+TGG | - | chr8.2:8678492-8678511 | None:intergenic | 30.0% | |
| CAACGATGAATTGAATTACT+AGG | - | chr8.2:8679950-8679969 | None:intergenic | 30.0% | |
| CAATTGCCAAGGTTATAATA+TGG | + | chr8.2:8680314-8680333 | MS.gene030226:intron | 30.0% | |
| CTGTGTTTAATTGTATTCTC+AGG | + | chr8.2:8678521-8678540 | MS.gene030226:intron | 30.0% | |
| TCCATCATCAGAGAAAAAAA+GGG | - | chr8.2:8678465-8678484 | None:intergenic | 30.0% | |
| TCTAAACAATACTGAGCAAA+AGG | - | chr8.2:8680289-8680308 | None:intergenic | 30.0% | |
| TTAATACCCATCATTGATGA+AGG | + | chr8.2:8679122-8679141 | MS.gene030226:intron | 30.0% | |
| TTAATTGTATTCTCAGGCAT+CGG | + | chr8.2:8678527-8678546 | MS.gene030226:intron | 30.0% | |
| TTTATGTTCCTTAATACGAC+AGG | + | chr8.2:8680132-8680151 | MS.gene030226:intron | 30.0% | |
| TTTGTTTGTTTATTGACAGC+TGG | + | chr8.2:8679168-8679187 | MS.gene030226:intron | 30.0% | |
| ! | TAAAATCTGAAACCTTGCTT+CGG | - | chr8.2:8681066-8681085 | None:intergenic | 30.0% |
| ! | TTTTTGCACTTTGAACAATC+GGG | - | chr8.2:8678439-8678458 | None:intergenic | 30.0% |
| !!! | CTTTATTTTTAGGCTCTGTT+TGG | + | chr8.2:8678865-8678884 | MS.gene030226:intron | 30.0% |
| !!! | TTTCAGGGTCCTTTATTTTT+AGG | + | chr8.2:8678855-8678874 | MS.gene030226:intron | 30.0% |
| !!! | TTTTGAGGCTTACATTTTGA+TGG | + | chr8.2:8680497-8680516 | MS.gene030226:intron | 30.0% |
| AAGAGAGCTTGACAAGATAT+TGG | + | chr8.2:8679272-8679291 | MS.gene030226:CDS | 35.0% | |
| ACAACGCAAGGCATAATAAA+TGG | - | chr8.2:8680407-8680426 | None:intergenic | 35.0% | |
| AGAAGACCTTCATCAATGAT+GGG | - | chr8.2:8679131-8679150 | None:intergenic | 35.0% | |
| AGCATTATTACCAGCTAAAC+AGG | + | chr8.2:8680364-8680383 | MS.gene030226:intron | 35.0% | |
| AGGGAAACAAACAACATACT+TGG | - | chr8.2:8679495-8679514 | None:intergenic | 35.0% | |
| AGTGATGGTTGATCTGAATT+TGG | + | chr8.2:8680448-8680467 | MS.gene030226:intron | 35.0% | |
| ATAACACTGATCATCAGTCA+CGG | + | chr8.2:8680207-8680226 | MS.gene030226:CDS | 35.0% | |
| ATGTCTATTTACATTTCCCC+TGG | - | chr8.2:8679800-8679819 | None:intergenic | 35.0% | |
| ATTTCGCTAAATGCATTTGC+CGG | - | chr8.2:8680609-8680628 | None:intergenic | 35.0% | |
| CTCCATCATCAGAGAAAAAA+AGG | - | chr8.2:8678466-8678485 | None:intergenic | 35.0% | |
| TAATTGTATTCTCAGGCATC+GGG | + | chr8.2:8678528-8678547 | MS.gene030226:intron | 35.0% | |
| TAGTGACTCTATTGTAGAAG+AGG | + | chr8.2:8679670-8679689 | MS.gene030226:intron | 35.0% | |
| TCGAAATTCACCATACAACT+CGG | - | chr8.2:8679431-8679450 | None:intergenic | 35.0% | |
| TCGATTATTCAGATAACCAC+CGG | + | chr8.2:8679246-8679265 | MS.gene030226:CDS | 35.0% | |
| TGCTCAGTATTGTTTAGATC+TGG | + | chr8.2:8680291-8680310 | MS.gene030226:intron | 35.0% | |
| TGTATGGTGAATTTCGATCT+GGG | + | chr8.2:8679434-8679453 | MS.gene030226:CDS | 35.0% | |
| TGTGCATTACAATAGTGACA+TGG | - | chr8.2:8680673-8680692 | None:intergenic | 35.0% | |
| TTAACCTGAAGTTGTTCTAC+GGG | - | chr8.2:8678343-8678362 | None:intergenic | 35.0% | |
| TTCAATGATCTTGTCAACCT+TGG | - | chr8.2:8678664-8678683 | None:intergenic | 35.0% | |
| TTGACAAGATATTGGAAGGT+TGG | + | chr8.2:8679280-8679299 | MS.gene030226:intron | 35.0% | |
| TTGTATGGTGAATTTCGATC+TGG | + | chr8.2:8679433-8679452 | MS.gene030226:CDS | 35.0% | |
| ! | AAACAAGGTATGACTTTTGC+TGG | + | chr8.2:8680261-8680280 | MS.gene030226:intron | 35.0% |
| ! | AATCTGTTGCTTATACTCCT+AGG | + | chr8.2:8678604-8678623 | MS.gene030226:CDS | 35.0% |
| ! | AGTGATTAGTTCTCCTTGTT+TGG | + | chr8.2:8681034-8681053 | MS.gene030226:CDS | 35.0% |
| ! | CAAGTAGTTTCACAAGTTGA+CGG | + | chr8.2:8680897-8680916 | MS.gene030226:CDS | 35.0% |
| ! | CTCTATAGGACAGATTTTTC+CGG | + | chr8.2:8680565-8680584 | MS.gene030226:CDS | 35.0% |
| ! | GAAGCAAGGTTTCAGATTTT+AGG | + | chr8.2:8681065-8681084 | MS.gene030226:CDS | 35.0% |
| ! | GTAGAACAACTTCAGGTTAA+TGG | + | chr8.2:8678343-8678362 | MS.gene030226:intron | 35.0% |
| ! | TGTGTAATTGTAGTTTGGTG+TGG | + | chr8.2:8680857-8680876 | MS.gene030226:intron | 35.0% |
| !! | ACAAGAGGTATTGACACAAA+AGG | - | chr8.2:8679515-8679534 | None:intergenic | 35.0% |
| !! | ATATTGCTGTTTCAATCAGG+TGG | + | chr8.2:8679385-8679404 | MS.gene030226:intron | 35.0% |
| !! | CAAGAGGTATTGACACAAAA+GGG | - | chr8.2:8679514-8679533 | None:intergenic | 35.0% |
| !! | CATTTTGATGGCTTATATGC+AGG | + | chr8.2:8680509-8680528 | MS.gene030226:intron | 35.0% |
| !!! | ACCCTTTTTTTCTCTGATGA+TGG | + | chr8.2:8678461-8678480 | MS.gene030226:intron | 35.0% |
| !!! | CTTTTTTTCTCTGATGATGG+AGG | + | chr8.2:8678464-8678483 | MS.gene030226:intron | 35.0% |
| ACTGAATGGTCCTGATGTAT+TGG | + | chr8.2:8680160-8680179 | MS.gene030226:CDS | 40.0% | |
| ACTTGAAGCAGCTTCAATGA+TGG | + | chr8.2:8680235-8680254 | MS.gene030226:CDS | 40.0% | |
| AGTCCAAACCTGTCGTATTA+AGG | - | chr8.2:8680143-8680162 | None:intergenic | 40.0% | |
| CAGAAGACCTTCATCAATGA+TGG | - | chr8.2:8679132-8679151 | None:intergenic | 40.0% | |
| CCTCATCTGCTAATTTCTGA+AGG | - | chr8.2:8680642-8680661 | None:intergenic | 40.0% | |
| CCTTCAGAAATTAGCAGATG+AGG | + | chr8.2:8680639-8680658 | MS.gene030226:CDS | 40.0% | |
| CGATTATTCAGATAACCACC+GGG | + | chr8.2:8679247-8679266 | MS.gene030226:CDS | 40.0% | |
| CGTCAACTTGTGAAACTACT+TGG | - | chr8.2:8680899-8680918 | None:intergenic | 40.0% | |
| GAAACCGAAGAGATTCAACA+CGG | + | chr8.2:8678310-8678329 | MS.gene030226:CDS | 40.0% | |
| GACTCTTACAGATAGCAGAT+AGG | + | chr8.2:8680052-8680071 | MS.gene030226:CDS | 40.0% | |
| GAGCTTGACAAGATATTGGA+AGG | + | chr8.2:8679276-8679295 | MS.gene030226:CDS | 40.0% | |
| GTAGAAGAGGAAATTCTTGG+AGG | + | chr8.2:8679683-8679702 | MS.gene030226:intron | 40.0% | |
| GTTCCTTAATACGACAGGTT+TGG | + | chr8.2:8680137-8680156 | MS.gene030226:intron | 40.0% | |
| GTTGAATCTCTTCGGTTTCT+TGG | - | chr8.2:8678309-8678328 | None:intergenic | 40.0% | |
| GTTGACAAGATCATTGAAGC+AGG | + | chr8.2:8678666-8678685 | MS.gene030226:CDS | 40.0% | |
| TAAAACCTAGCCTGTTTAGC+TGG | - | chr8.2:8680377-8680396 | None:intergenic | 40.0% | |
| TATTACCAGCTAAACAGGCT+AGG | + | chr8.2:8680369-8680388 | MS.gene030226:intron | 40.0% | |
| TCAATCAGGTGGAATTGAGA+CGG | + | chr8.2:8679396-8679415 | MS.gene030226:intron | 40.0% | |
| TCTCCTAACAAGTTACCACT+TGG | - | chr8.2:8679552-8679571 | None:intergenic | 40.0% | |
| TGAAGTTGTTCTACGGGTAA+AGG | - | chr8.2:8678337-8678356 | None:intergenic | 40.0% | |
| TTCTAGTGCTTTCTACCAAG+TGG | + | chr8.2:8679534-8679553 | MS.gene030226:intron | 40.0% | |
| TTGTAGTTGCCACTAGATCA+AGG | + | chr8.2:8679973-8679992 | MS.gene030226:intron | 40.0% | |
| TTTACCCGTAGAACAACTTC+AGG | + | chr8.2:8678336-8678355 | MS.gene030226:CDS | 40.0% | |
| TTTAGATCTGGCAATTGCCA+AGG | + | chr8.2:8680303-8680322 | MS.gene030226:intron | 40.0% | |
| TTTATTGACAGCTGGTAAGC+TGG | + | chr8.2:8679176-8679195 | MS.gene030226:intron | 40.0% | |
| TTTCGCTAAATGCATTTGCC+GGG | - | chr8.2:8680608-8680627 | None:intergenic | 40.0% | |
| ! | AGGTTTCAGATTTTAGGCGA+AGG | + | chr8.2:8681071-8681090 | MS.gene030226:CDS | 40.0% |
| ! | CTAATTTCTGAAGGCTTCTC+AGG | - | chr8.2:8680633-8680652 | None:intergenic | 40.0% |
| ! | GCGACATTTTCCAATACATC+AGG | - | chr8.2:8680173-8680192 | None:intergenic | 40.0% |
| ! | GGTTTCAGATTTTAGGCGAA+GGG | + | chr8.2:8681072-8681091 | MS.gene030226:CDS | 40.0% |
| ! | GTTTCAGATTTTAGGCGAAG+GGG | + | chr8.2:8681073-8681092 | MS.gene030226:CDS | 40.0% |
| !! | CTACCAAGTGGTAACTTGTT+AGG | + | chr8.2:8679546-8679565 | MS.gene030226:intron | 40.0% |
| !! | CTTCAATGATGGTGGAAACA+AGG | + | chr8.2:8680246-8680265 | MS.gene030226:CDS | 40.0% |
| !! | GTAGAAAGCACTAGAACAAG+AGG | - | chr8.2:8679530-8679549 | None:intergenic | 40.0% |
| AATGTTGCCACCAATTGGCT+TGG | - | chr8.2:8680949-8680968 | None:intergenic | 45.0% | |
| AGCTATGTACATAGATGCCG+AGG | + | chr8.2:8680011-8680030 | MS.gene030226:CDS | 45.0% | |
| AGGACCGTGTTGAATCTCTT+CGG | - | chr8.2:8678317-8678336 | None:intergenic | 45.0% | |
| ATGAAGGTCTTCTGAGTCTG+TGG | + | chr8.2:8679138-8679157 | MS.gene030226:intron | 45.0% | |
| CAATCAGGTGGAATTGAGAC+GGG | + | chr8.2:8679397-8679416 | MS.gene030226:intron | 45.0% | |
| CTAGCGCTAGTAAAACCCAT+AGG | - | chr8.2:8679204-8679223 | None:intergenic | 45.0% | |
| GCCATAATGTTGCCACCAAT+TGG | - | chr8.2:8680954-8680973 | None:intergenic | 45.0% | |
| GCTATGTACATAGATGCCGA+GGG | + | chr8.2:8680012-8680031 | MS.gene030226:CDS | 45.0% | |
| GGTTCTATCACCGAGTTGTA+TGG | + | chr8.2:8679418-8679437 | MS.gene030226:CDS | 45.0% | |
| TACGACAGGTTTGGACTGAA+TGG | + | chr8.2:8680146-8680165 | MS.gene030226:intron | 45.0% | |
| TAGATGCCGAGGGAACATTT+AGG | + | chr8.2:8680022-8680041 | MS.gene030226:CDS | 45.0% | |
| TAGCTCTCAGGAAAGGAAGA+GGG | + | chr8.2:8680994-8681013 | MS.gene030226:CDS | 45.0% | |
| TAGTTGCCACTAGATCAAGG+AGG | + | chr8.2:8679976-8679995 | MS.gene030226:intron | 45.0% | |
| TGAAGCAGCTTCAATGATGG+TGG | + | chr8.2:8680238-8680257 | MS.gene030226:CDS | 45.0% | |
| ! | ACAAGGTTAGCTCTCAGGAA+AGG | + | chr8.2:8680987-8681006 | MS.gene030226:CDS | 45.0% |
| ! | ACAGTGCTACTGCTCTCTAT+AGG | + | chr8.2:8680551-8680570 | MS.gene030226:CDS | 45.0% |
| ! | AGGACAGATTTTTCCGGAAG+AGG | + | chr8.2:8680571-8680590 | MS.gene030226:CDS | 45.0% |
| ! | GACAGATTTTTCCGGAAGAG+GGG | + | chr8.2:8680573-8680592 | MS.gene030226:CDS | 45.0% |
| ! | GATTTTAGGCGAAGGGGTTT+CGG | + | chr8.2:8681079-8681098 | MS.gene030226:CDS | 45.0% |
| ! | GCCAATTGGTGGCAACATTA+TGG | + | chr8.2:8680950-8680969 | MS.gene030226:CDS | 45.0% |
| ! | GGACAGATTTTTCCGGAAGA+GGG | + | chr8.2:8680572-8680591 | MS.gene030226:CDS | 45.0% |
| ! | TTAGCTCTCAGGAAAGGAAG+AGG | + | chr8.2:8680993-8681012 | MS.gene030226:CDS | 45.0% |
| !! | CAAAGGTATCAGTGATGCCA+AGG | + | chr8.2:8678644-8678663 | MS.gene030226:CDS | 45.0% |
| ACTAGATCAAGGAGGAGGTG+AGG | + | chr8.2:8679984-8680003 | MS.gene030226:CDS | 50.0% | |
| AGCTCTCAGGAAAGGAAGAG+GGG | + | chr8.2:8680995-8681014 | MS.gene030226:CDS | 50.0% | |
| CTAGATCAAGGAGGAGGTGA+GGG | + | chr8.2:8679985-8680004 | MS.gene030226:CDS | 50.0% | |
| CTGAGGCCTAAATGTTCCCT+CGG | - | chr8.2:8680031-8680050 | None:intergenic | 50.0% | |
| CTTGTCAAGCTCTCTTGACC+CGG | - | chr8.2:8679268-8679287 | None:intergenic | 50.0% | |
| GACGGTTCTGCAATGTTTGC+TGG | + | chr8.2:8680915-8680934 | MS.gene030226:CDS | 50.0% | |
| GCTATCTGTAAGAGTCGCTG+AGG | - | chr8.2:8680048-8680067 | None:intergenic | 50.0% | |
| TCACCTCCTCCTTGATCTAG+TGG | - | chr8.2:8679985-8680004 | None:intergenic | 50.0% | |
| TTGCCACTAGATCAAGGAGG+AGG | + | chr8.2:8679979-8679998 | MS.gene030226:CDS | 50.0% | |
| !! | CCACCAATTGGCTTGGTTTG+GGG | - | chr8.2:8680942-8680961 | None:intergenic | 50.0% |
| !! | GCCACCAATTGGCTTGGTTT+GGG | - | chr8.2:8680943-8680962 | None:intergenic | 50.0% |
| !! | TGCCACCAATTGGCTTGGTT+TGG | - | chr8.2:8680944-8680963 | None:intergenic | 50.0% |
| !! | TTCTCAGGCATCGGGTATAG+CGG | + | chr8.2:8678536-8678555 | MS.gene030226:intron | 50.0% |
| AGCTGGTAAGCTGGTGCCTA+TGG | + | chr8.2:8679185-8679204 | MS.gene030226:intron | 55.0% | |
| CCCCAAACCAAGCCAATTGG+TGG | + | chr8.2:8680939-8680958 | MS.gene030226:CDS | 55.0% | |
| CCTGAGAGCTAACCTTGTCG+TGG | - | chr8.2:8680985-8681004 | None:intergenic | 55.0% | |
| GCTGGTAAGCTGGTGCCTAT+GGG | + | chr8.2:8679186-8679205 | MS.gene030226:intron | 55.0% | |
| GCTTCGGCTTCAGCCAAACA+AGG | - | chr8.2:8681050-8681069 | None:intergenic | 55.0% | |
| GGACCCCAAACCAAGCCAAT+TGG | + | chr8.2:8680936-8680955 | MS.gene030226:CDS | 55.0% | |
| GTTTGGCTGAAGCCGAAGCA+AGG | + | chr8.2:8681051-8681070 | MS.gene030226:CDS | 55.0% | |
| TGGCTCATGCAACCACGACA+AGG | + | chr8.2:8680970-8680989 | MS.gene030226:CDS | 55.0% | |
| ! | CCACGACAAGGTTAGCTCTC+AGG | + | chr8.2:8680982-8681001 | MS.gene030226:CDS | 55.0% |
| GAAGAGGGGAGCTTTCAGCC+CGG | + | chr8.2:8680587-8680606 | MS.gene030226:CDS | 60.0% | |
| GGCTGAAAGCTCCCCTCTTC+CGG | - | chr8.2:8680587-8680606 | None:intergenic | 60.0% | |
| GTCAAGCTCTCTTGACCCGG+TGG | - | chr8.2:8679265-8679284 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 8678265 | 8681115 | 8678265 | ID=MS.gene030226 |
| chr8.2 | mRNA | 8678265 | 8681115 | 8678265 | ID=MS.gene030226.t1;Parent=MS.gene030226 |
| chr8.2 | exon | 8678265 | 8678357 | 8678265 | ID=MS.gene030226.t1.exon1;Parent=MS.gene030226.t1 |
| chr8.2 | CDS | 8678265 | 8678357 | 8678265 | ID=cds.MS.gene030226.t1;Parent=MS.gene030226.t1 |
| chr8.2 | exon | 8678543 | 8678687 | 8678543 | ID=MS.gene030226.t1.exon2;Parent=MS.gene030226.t1 |
| chr8.2 | CDS | 8678543 | 8678687 | 8678543 | ID=cds.MS.gene030226.t1;Parent=MS.gene030226.t1 |
| chr8.2 | exon | 8679187 | 8679297 | 8679187 | ID=MS.gene030226.t1.exon3;Parent=MS.gene030226.t1 |
| chr8.2 | CDS | 8679187 | 8679297 | 8679187 | ID=cds.MS.gene030226.t1;Parent=MS.gene030226.t1 |
| chr8.2 | exon | 8679404 | 8679495 | 8679404 | ID=MS.gene030226.t1.exon4;Parent=MS.gene030226.t1 |
| chr8.2 | CDS | 8679404 | 8679495 | 8679404 | ID=cds.MS.gene030226.t1;Parent=MS.gene030226.t1 |
| chr8.2 | exon | 8679979 | 8680073 | 8679979 | ID=MS.gene030226.t1.exon5;Parent=MS.gene030226.t1 |
| chr8.2 | CDS | 8679979 | 8680073 | 8679979 | ID=cds.MS.gene030226.t1;Parent=MS.gene030226.t1 |
| chr8.2 | exon | 8680154 | 8680267 | 8680154 | ID=MS.gene030226.t1.exon6;Parent=MS.gene030226.t1 |
| chr8.2 | CDS | 8680154 | 8680267 | 8680154 | ID=cds.MS.gene030226.t1;Parent=MS.gene030226.t1 |
| chr8.2 | exon | 8680531 | 8680660 | 8680531 | ID=MS.gene030226.t1.exon7;Parent=MS.gene030226.t1 |
| chr8.2 | CDS | 8680531 | 8680660 | 8680531 | ID=cds.MS.gene030226.t1;Parent=MS.gene030226.t1 |
| chr8.2 | exon | 8680870 | 8681115 | 8680870 | ID=MS.gene030226.t1.exon8;Parent=MS.gene030226.t1 |
| chr8.2 | CDS | 8680870 | 8681115 | 8680870 | ID=cds.MS.gene030226.t1;Parent=MS.gene030226.t1 |
| Gene Sequence |
| Protein sequence |
