AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030825

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030825.t1 MTR_8g090130 100.000 309 0 0 37 345 1 309 0.0 619
MS.gene030825.t1 MTR_5g081710 73.490 298 77 2 47 343 8 304 1.78e-160 451
MS.gene030825.t1 MTR_3g462070 70.805 298 87 0 46 343 8 305 2.55e-157 443
MS.gene030825.t1 MTR_3g070000 73.038 293 79 0 51 343 28 320 2.13e-155 439
MS.gene030825.t1 MTR_4g018760 68.966 290 90 0 55 344 20 309 1.61e-145 413
MS.gene030825.t1 MTR_4g101860 59.184 294 120 0 50 343 55 348 5.40e-118 345
MS.gene030825.t1 MTR_3g072380 32.646 291 188 3 55 342 22 307 2.28e-48 166
MS.gene030825.t1 MTR_1g030320 32.404 287 192 1 55 341 21 305 4.83e-48 165
MS.gene030825.t1 MTR_0011s0320 35.473 296 177 7 52 341 18 305 2.86e-35 132
MS.gene030825.t1 MTR_4g114360 34.007 297 180 9 52 341 18 305 2.85e-33 126
MS.gene030825.t1 MTR_3g107470 31.562 320 202 6 27 341 2 309 5.09e-33 125
MS.gene030825.t1 MTR_3g072380 34.463 177 114 1 55 231 22 196 1.26e-29 114
MS.gene030825.t1 MTR_0662s0010 34.457 267 159 9 52 311 18 275 3.08e-28 111
MS.gene030825.t1 MTR_7g110380 29.260 311 210 4 37 343 4 308 3.38e-27 110
MS.gene030825.t1 MTR_2g070400 25.796 314 218 6 37 343 1 306 1.12e-22 97.4
MS.gene030825.t1 MTR_4g123900 28.322 286 197 3 61 343 24 304 1.75e-22 97.4
MS.gene030825.t1 MTR_6g005480 27.217 327 224 5 21 342 91 408 5.25e-19 87.8
MS.gene030825.t1 MTR_4g123900 27.941 272 188 3 61 329 24 290 5.29e-19 86.3
MS.gene030825.t1 MTR_4g105630 26.578 301 201 9 51 342 88 377 2.16e-17 82.8
MS.gene030825.t1 MTR_8g016090 24.172 302 203 7 50 334 171 463 3.40e-16 79.7
MS.gene030825.t1 MTR_2g038410 29.966 297 177 11 50 337 63 337 1.09e-15 77.8
MS.gene030825.t1 MTR_4g105630 25.773 291 196 9 51 332 88 367 2.53e-14 73.6
MS.gene030825.t1 MTR_3g077640 24.242 330 225 7 22 342 89 402 3.35e-13 70.5
MS.gene030825.t1 MTR_5g044220 25.649 308 204 11 50 343 106 402 8.81e-13 69.3
MS.gene030825.t1 MTR_3g095130 23.693 287 211 4 58 343 24 303 1.90e-11 64.7
MS.gene030825.t1 MTR_4g088350 25.418 299 203 11 55 345 106 392 2.55e-11 64.7
MS.gene030825.t1 MTR_8g016090 24.691 243 154 6 112 334 180 413 2.69e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030825.t1 AT5G04160 78.964 309 65 0 37 345 1 309 0.0 506
MS.gene030825.t1 AT3G10290 78.947 304 64 0 42 345 52 355 0.0 505
MS.gene030825.t1 AT3G11320 74.744 293 74 0 51 343 14 306 3.66e-158 445
MS.gene030825.t1 AT5G05820 73.038 293 79 0 51 343 14 306 2.66e-154 436
MS.gene030825.t1 AT1G12500 53.988 326 150 0 18 343 29 354 1.42e-121 354
MS.gene030825.t1 AT1G21870 33.564 289 188 3 55 342 22 307 6.64e-48 165
MS.gene030825.t1 AT1G77610 33.219 292 185 5 55 342 16 301 4.53e-47 162
MS.gene030825.t1 AT5G11230 34.228 298 182 7 52 343 22 311 1.75e-35 132
MS.gene030825.t1 AT5G25400 32.817 323 198 8 27 343 2 311 3.66e-34 129
MS.gene030825.t1 AT4G32390 33.127 323 197 8 27 343 2 311 5.29e-34 128
MS.gene030825.t1 AT2G25520 35.135 296 178 7 52 341 22 309 5.34e-32 123
MS.gene030825.t1 AT1G53660 29.066 289 190 6 61 343 30 309 1.41e-26 108
MS.gene030825.t1 AT1G53660 29.066 289 190 6 61 343 48 327 1.85e-26 108
MS.gene030825.t1 AT3G17430 29.268 287 193 5 61 343 25 305 1.35e-25 106
MS.gene030825.t1 AT3G17430 29.268 287 193 5 61 343 25 305 1.35e-25 106
MS.gene030825.t1 AT1G53660 28.832 274 182 5 74 343 11 275 4.56e-25 103
MS.gene030825.t1 AT3G14410 28.472 288 196 5 61 343 28 310 1.70e-23 99.8
MS.gene030825.t1 AT1G48230 29.617 287 192 5 61 343 25 305 4.47e-23 99.0
MS.gene030825.t1 AT1G53660 31.481 216 136 4 131 343 9 215 6.52e-22 93.2
MS.gene030825.t1 AT5G57100 30.169 295 177 9 60 343 76 352 8.63e-20 89.7
MS.gene030825.t1 AT3G01550 25.076 327 230 6 21 342 57 373 4.14e-18 85.1
MS.gene030825.t1 AT5G57100 31.633 196 121 6 60 250 76 263 1.56e-16 79.3
MS.gene030825.t1 AT1G48230 29.075 227 153 4 117 341 10 230 1.19e-15 76.6
MS.gene030825.t1 AT3G01550 24.465 327 227 7 21 342 57 368 6.91e-15 75.5
MS.gene030825.t1 AT1G06470 23.746 299 208 5 50 334 77 369 1.82e-14 74.3
MS.gene030825.t1 AT1G06470 23.746 299 208 5 50 334 77 369 1.82e-14 74.3
MS.gene030825.t1 AT1G06470 23.746 299 208 5 50 334 77 369 1.82e-14 74.3
MS.gene030825.t1 AT1G06470 23.746 299 208 5 50 334 77 369 1.82e-14 74.3
MS.gene030825.t1 AT5G55950 30.584 291 169 10 60 337 69 339 6.03e-14 72.8
MS.gene030825.t1 AT5G55950 30.584 291 169 10 60 337 9 279 9.76e-14 71.6
MS.gene030825.t1 AT5G46110 26.087 345 229 14 13 345 71 401 9.09e-13 69.3
MS.gene030825.t1 AT5G46110 26.087 345 229 14 13 345 71 401 9.66e-13 69.3
MS.gene030825.t1 AT5G55950 32.828 198 116 7 60 250 69 256 1.00e-12 68.6
MS.gene030825.t1 AT5G57100 36.879 141 78 5 60 195 76 210 1.70e-12 67.4
MS.gene030825.t1 AT5G46110 26.821 302 197 13 54 345 1 288 1.92e-12 67.4
MS.gene030825.t1 AT4G39390 26.190 294 195 8 58 343 25 304 9.34e-12 65.9
MS.gene030825.t1 AT4G39390 25.850 294 196 7 58 343 29 308 1.12e-11 65.5
MS.gene030825.t1 AT4G39390 25.850 294 196 7 58 343 29 308 1.12e-11 65.5
MS.gene030825.t1 AT4G09810 22.930 314 223 6 33 343 6 303 4.31e-11 63.9

Find 61 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAAAGAACATAAATTTA+TGG 0.161882 4.2:+11383285 MS.gene030825:CDS
AAGTACCTTATCTCAAATTA+TGG 0.221981 4.2:+11381461 MS.gene030825:CDS
ATCAAGGTCACAGTTCTTAA+AGG 0.247185 4.2:+11381589 MS.gene030825:CDS
TGGTGATGGCAGGGTGAGCC+TGG 0.262017 4.2:+11382336 MS.gene030825:intron
CAATATCTCTCTCAAGTATT+TGG 0.275503 4.2:+11381655 MS.gene030825:CDS
AGCTTTCAAATCTGTTCTTC+AGG 0.288805 4.2:+11382407 MS.gene030825:CDS
GAGCCTGGGTTTCACTTGTT+TGG 0.295030 4.2:+11382351 MS.gene030825:CDS
AATTATGTTAATCAGGTATT+AGG 0.309168 4.2:+11383704 MS.gene030825:intron
CAATAAAAGTGACAGGGTTT+TGG 0.309718 4.2:-11383772 None:intergenic
GCTCTTGTTCCTGTTGTTGC+TGG 0.312689 4.2:+11381779 MS.gene030825:CDS
CTTAACTCAGCCGCAGCATA+TGG 0.344628 4.2:+11383322 MS.gene030825:CDS
GGAAAAGAACATAAATTTAT+GGG 0.351125 4.2:+11383286 MS.gene030825:CDS
AGCAAACTTAACAAACTTCT+TGG 0.373328 4.2:+11383345 MS.gene030825:CDS
GGCTACTCAGTTACTGTAAT+GGG 0.394558 4.2:+11383803 MS.gene030825:CDS
AACATGAATTCTTTGTTGTT+TGG 0.399155 4.2:-11381380 None:intergenic
GGAGGAGGTGGAATCAAATC+AGG 0.422337 4.2:+11381344 MS.gene030825:CDS
GCTTTCAAATCTGTTCTTCA+GGG 0.437125 4.2:+11382408 MS.gene030825:CDS
TTGCATACGGAGAAACAAAA+AGG 0.447859 4.2:+11383831 MS.gene030825:CDS
TGACACATTGTGAGGAAGAT+TGG 0.449241 4.2:-11381494 None:intergenic
TGAAACCATAATTTGAGATA+AGG 0.466205 4.2:-11381466 None:intergenic
GGTGATGGCAGGGTGAGCCT+GGG 0.473562 4.2:+11382337 MS.gene030825:intron
TAAGAACTATGTGAACTCAT+TGG 0.491159 4.2:-11380836 None:intergenic
GCCATGCCAATAAAAGTGAC+AGG 0.492901 4.2:-11383779 None:intergenic
ATGGCAACACCAGCAACAAC+AGG 0.493877 4.2:-11381788 None:intergenic
CTCTTGCAGCGGTTGCACTT+AGG 0.496429 4.2:-11382386 None:intergenic
TTGCAAATCCAGGGAGGAGG+TGG 0.497230 4.2:+11381332 MS.gene030825:intron
AGCGTGATATCTAAAACATT+CGG 0.497597 4.2:-11383256 None:intergenic
TGGCTACTCAGTTACTGTAA+TGG 0.499480 4.2:+11383802 MS.gene030825:CDS
CTGCGATTGGAGACATATAC+AGG 0.502629 4.2:-11383198 None:intergenic
TACAAGTGCTTTGACACTCC+AGG 0.510037 4.2:+11383378 MS.gene030825:CDS
TTAGATATCACGCTATCACT+TGG 0.514237 4.2:+11383265 MS.gene030825:CDS
GTTTCTTTCAACCAAGCTGT+AGG 0.516484 4.2:+11381680 MS.gene030825:CDS
CTCAACAGATGATTAAATCA+AGG 0.523888 4.2:+11381573 MS.gene030825:CDS
GGCTCCATGAAAACTACTGC+AGG 0.527890 4.2:-11383235 None:intergenic
TGGAATCAAATCAGGGAAGA+TGG 0.528633 4.2:+11381352 MS.gene030825:CDS
CAGGTATTAGGCAATGCAAA+AGG 0.533740 4.2:+11383716 MS.gene030825:intron
AAGGGCACGGTTAAAGAAAG+TGG 0.535006 4.2:+11380896 MS.gene030825:CDS
CATGAGATCCAAAGGATCCA+TGG 0.542594 4.2:+11380862 MS.gene030825:CDS
GCTGGTGTTGCCATTGCAAG+TGG 0.549715 4.2:+11381797 MS.gene030825:CDS
CTTGATTTAATCATCTGTTG+AGG 0.555444 4.2:-11381572 None:intergenic
AAAACATACCCCACTTGCAA+TGG 0.557860 4.2:-11381807 None:intergenic
CTGGTGTTGCCATTGCAAGT+GGG 0.559180 4.2:+11381798 MS.gene030825:CDS
CTTTGGTACTCATCAAACAT+TGG 0.563810 4.2:+11381422 MS.gene030825:CDS
ATCCATGGAAAATGAAAACA+AGG 0.586176 4.2:+11380877 MS.gene030825:CDS
TGGTGTTGCCATTGCAAGTG+GGG 0.597605 4.2:+11381799 MS.gene030825:CDS
GTAATGGGAGTTATTGCATA+CGG 0.599804 4.2:+11383818 MS.gene030825:CDS
AGGGCACGGTTAAAGAAAGT+GGG 0.600109 4.2:+11380897 MS.gene030825:CDS
TCTTACAGCATGAGATCCAA+AGG 0.603872 4.2:+11380854 MS.gene030825:CDS
ACATTGCAAATCCAGGGAGG+AGG 0.617057 4.2:+11381329 MS.gene030825:intron
AATCCAAACAAGTGAAACCC+AGG 0.628421 4.2:-11382354 None:intergenic
GGAAAATGAAAACAAGGGCA+CGG 0.640574 4.2:+11380883 MS.gene030825:CDS
CCATGCCAATAAAAGTGACA+GGG 0.651043 4.2:-11383778 None:intergenic
GTGTGGTTGCACCTACAGCT+TGG 0.651188 4.2:-11381691 None:intergenic
AACAATCTTAAAGAACACAA+TGG 0.654847 4.2:-11381549 None:intergenic
GAGGAGGTGGAATCAAATCA+GGG 0.660705 4.2:+11381345 MS.gene030825:CDS
TAAGTTTGCTCCATATGCTG+CGG 0.688898 4.2:-11383332 None:intergenic
AGATTTGAAAGCTCTTGCAG+CGG 0.693952 4.2:-11382397 None:intergenic
AACAGCAGTGAAGAAAGGTG+TGG 0.696609 4.2:-11381708 None:intergenic
GGGCACGGTTAAAGAAAGTG+GGG 0.727668 4.2:+11380898 MS.gene030825:CDS
CTGTCATGTGACACATTGTG+AGG 0.735310 4.2:-11381502 None:intergenic
TCCATGGAAAATGAAAACAA+GGG 0.738782 4.2:+11380878 MS.gene030825:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAATTAAAATTATCATA+TGG - chr4.2:11382278-11382297 None:intergenic 10.0%
!! ATTATAATTGCTTATAATAT+AGG + chr4.2:11381874-11381893 MS.gene030825:intron 10.0%
!!! TGATAATTTTAATTTGTTAT+TGG + chr4.2:11382280-11382299 MS.gene030825:intron 10.0%
!! ATTAAGAATCCAAAAAAATA+TGG - chr4.2:11383073-11383092 None:intergenic 15.0%
!! TAAATAAGGGTAAAAAATAA+AGG + chr4.2:11381244-11381263 MS.gene030825:intron 15.0%
!! TTAAGAATCCAAAAAAATAT+GGG - chr4.2:11383072-11383091 None:intergenic 15.0%
!! TTTATAATCAATTAGCATTT+AGG + chr4.2:11382142-11382161 MS.gene030825:intron 15.0%
!!! TAATTATATTTTTAGCTTTG+AGG - chr4.2:11383458-11383477 None:intergenic 15.0%
!! AATTATGTTAATCAGGTATT+AGG + chr4.2:11383704-11383723 MS.gene030825:intron 20.0%
!! ATTAAAATTATCATATGGTG+TGG - chr4.2:11382273-11382292 None:intergenic 20.0%
!! ATTATTATTACAACCTTCAA+TGG + chr4.2:11383497-11383516 MS.gene030825:intron 20.0%
!! CATAAAAATTGTCATGAATT+AGG + chr4.2:11382219-11382238 MS.gene030825:intron 20.0%
!! CATATAAAAAATGAGATTCA+AGG - chr4.2:11382669-11382688 None:intergenic 20.0%
!! GGAAAAGAACATAAATTTAT+GGG + chr4.2:11383286-11383305 MS.gene030825:CDS 20.0%
!! TAAGAATCCAAAAAAATATG+GGG - chr4.2:11383071-11383090 None:intergenic 20.0%
!! TATAAAAATACCAAACAATC+TGG - chr4.2:11382128-11382147 None:intergenic 20.0%
!! TGGAAAAGAACATAAATTTA+TGG + chr4.2:11383285-11383304 MS.gene030825:CDS 20.0%
!!! ACATTTTTTTAATACGTTGT+TGG + chr4.2:11382316-11382335 MS.gene030825:intron 20.0%
!!! ATTTTATAGTACTGTTCTAA+AGG + chr4.2:11382552-11382571 MS.gene030825:intron 20.0%
!!! CTAATTCATGACAATTTTTA+TGG - chr4.2:11382221-11382240 None:intergenic 20.0%
!!! GAAATTATACATAGATGTTT+TGG + chr4.2:11381928-11381947 MS.gene030825:intron 20.0%
!!! GATTTTGGATTTTAATTTTC+TGG + chr4.2:11382056-11382075 MS.gene030825:intron 20.0%
!!! GTTTTTTTTGTTTGATTTGA+TGG + chr4.2:11381825-11381844 MS.gene030825:intron 20.0%
!!! TCGTGATTTTGTTAAAATTA+CGG - chr4.2:11381030-11381049 None:intergenic 20.0%
!!! TGGTTTTGATTTTGAAATTA+TGG + chr4.2:11381948-11381967 MS.gene030825:intron 20.0%
!!! TTTTGAAATTATGGATGTTT+TGG + chr4.2:11381957-11381976 MS.gene030825:intron 20.0%
! AAAGTAATTTCTTCAACACA+TGG - chr4.2:11380962-11380981 None:intergenic 25.0%
! AACAATCTTAAAGAACACAA+TGG - chr4.2:11381552-11381571 None:intergenic 25.0%
! AAGCTTCAATAAAATCACAT+TGG + chr4.2:11381093-11381112 MS.gene030825:intron 25.0%
! AAGTAATTTCTTCAACACAT+GGG - chr4.2:11380961-11380980 None:intergenic 25.0%
! AAGTACCTTATCTCAAATTA+TGG + chr4.2:11381461-11381480 MS.gene030825:CDS 25.0%
! ACAAATCAAGCTCATAAATA+AGG + chr4.2:11381230-11381249 MS.gene030825:intron 25.0%
! ATTAACTATATTTCCAGATC+TGG - chr4.2:11382004-11382023 None:intergenic 25.0%
! CAAATCAAGCTCATAAATAA+GGG + chr4.2:11381231-11381250 MS.gene030825:intron 25.0%
! CTTTACTTTGCGATAAATAT+TGG + chr4.2:11382988-11383007 MS.gene030825:intron 25.0%
! TAAAAAAATGTACACCATGT+TGG - chr4.2:11382307-11382326 None:intergenic 25.0%
! TATTTAGTTATTGTGAACTG+TGG + chr4.2:11382503-11382522 MS.gene030825:intron 25.0%
! TATTTATCGCAAAGTAAAGA+AGG - chr4.2:11382987-11383006 None:intergenic 25.0%
! TCTGTCAAATTATGTTAATC+AGG + chr4.2:11383697-11383716 MS.gene030825:intron 25.0%
! TTCAATTGTGTATGAACAAT+GGG - chr4.2:11382823-11382842 None:intergenic 25.0%
! TTTATTATTCAGCTCTTTGT+TGG + chr4.2:11382580-11382599 MS.gene030825:intron 25.0%
! TTTCAATTGTGTATGAACAA+TGG - chr4.2:11382824-11382843 None:intergenic 25.0%
!! ATGTACATAAAAGTCACTTT+CGG - chr4.2:11383527-11383546 None:intergenic 25.0%
!! CATCAGTGTATTAAAACTTT+TGG - chr4.2:11382850-11382869 None:intergenic 25.0%
!! TATAATATAGGTGTGTTGAT+TGG + chr4.2:11381886-11381905 MS.gene030825:intron 25.0%
!! TGAAACCATAATTTGAGATA+AGG - chr4.2:11381469-11381488 None:intergenic 25.0%
!! TTCATGACAATTTTTATGGT+AGG - chr4.2:11382217-11382236 None:intergenic 25.0%
!!! AACATGAATTCTTTGTTGTT+TGG - chr4.2:11381383-11381402 None:intergenic 25.0%
!!! TGTTATTTCATCTATTCATG+TGG + chr4.2:11382178-11382197 MS.gene030825:intron 25.0%
!!! TTTTTCAAATCTGTGACATT+TGG + chr4.2:11382034-11382053 MS.gene030825:intron 25.0%
AGCAAACTTAACAAACTTCT+TGG + chr4.2:11383345-11383364 MS.gene030825:CDS 30.0%
ATAAACACATTGCAAATCCA+GGG + chr4.2:11381323-11381342 MS.gene030825:intron 30.0%
ATCCATGGAAAATGAAAACA+AGG + chr4.2:11380877-11380896 MS.gene030825:CDS 30.0%
ATGCTTAATAAGCTGTGAAA+GGG - chr4.2:11382771-11382790 None:intergenic 30.0%
CAATATCTCTCTCAAGTATT+TGG + chr4.2:11381655-11381674 MS.gene030825:CDS 30.0%
CTCAACAGATGATTAAATCA+AGG + chr4.2:11381573-11381592 MS.gene030825:CDS 30.0%
CTTGATTTAATCATCTGTTG+AGG - chr4.2:11381575-11381594 None:intergenic 30.0%
GAGATAAAAAAAGACAAACC+TGG - chr4.2:11383399-11383418 None:intergenic 30.0%
TAGAAATTGACCATAACTTG+AGG + chr4.2:11383036-11383055 MS.gene030825:intron 30.0%
TATGCTTAATAAGCTGTGAA+AGG - chr4.2:11382772-11382791 None:intergenic 30.0%
TATGGTCAATTTCTATAGCT+TGG - chr4.2:11383031-11383050 None:intergenic 30.0%
TCCATGGAAAATGAAAACAA+GGG + chr4.2:11380878-11380897 MS.gene030825:CDS 30.0%
! AATCTGTGACATTTGGATTT+TGG + chr4.2:11382041-11382060 MS.gene030825:intron 30.0%
! AGCGTGATATCTAAAACATT+CGG - chr4.2:11383259-11383278 None:intergenic 30.0%
! CATGTTCATATGTTTTCTTG+TGG + chr4.2:11381397-11381416 MS.gene030825:CDS 30.0%
! GCATTTTACTTTCTTCTGAA+GGG + chr4.2:11382430-11382449 MS.gene030825:CDS 30.0%
!! AATTTGTTATTGGACCAACA+TGG + chr4.2:11382290-11382309 MS.gene030825:intron 30.0%
!! GTGCTCATGATTTTTATTTG+TGG - chr4.2:11383428-11383447 None:intergenic 30.0%
!! TTTTAATACGTTGTTGGTGA+TGG + chr4.2:11382322-11382341 MS.gene030825:intron 30.0%
!!! ACTTTGAGCTTTGTTTTTTG+TGG + chr4.2:11381617-11381636 MS.gene030825:CDS 30.0%
!!! CTTTGAGCTTTGTTTTTTGT+GGG + chr4.2:11381618-11381637 MS.gene030825:CDS 30.0%
!!! TTTAGCTACTTTTAAGAGAG+AGG + chr4.2:11381739-11381758 MS.gene030825:CDS 30.0%
AACAAAAATACGACTGCGAT+TGG - chr4.2:11383214-11383233 None:intergenic 35.0%
AACAAAGCTGAGTTAGCAAT+AGG - chr4.2:11383650-11383669 None:intergenic 35.0%
AAGCAAAAGCAATGTTAAGC+TGG - chr4.2:11382956-11382975 None:intergenic 35.0%
AGCTTTCAAATCTGTTCTTC+AGG + chr4.2:11382407-11382426 MS.gene030825:CDS 35.0%
ATCAAGGTCACAGTTCTTAA+AGG + chr4.2:11381589-11381608 MS.gene030825:CDS 35.0%
CAAAATCACGATGATTCATG+TGG + chr4.2:11381039-11381058 MS.gene030825:intron 35.0%
CTTTGGTACTCATCAAACAT+TGG + chr4.2:11381422-11381441 MS.gene030825:CDS 35.0%
GAATCCAAAAAAATATGGGG+AGG - chr4.2:11383068-11383087 None:intergenic 35.0%
GATAAACACATTGCAAATCC+AGG + chr4.2:11381322-11381341 MS.gene030825:intron 35.0%
GATGATTCATGTGGTGATAT+TGG + chr4.2:11381048-11381067 MS.gene030825:intron 35.0%
GCTTTCAAATCTGTTCTTCA+GGG + chr4.2:11382408-11382427 MS.gene030825:CDS 35.0%
GTGTTCTCCTTAATGATGTT+TGG - chr4.2:11382749-11382768 None:intergenic 35.0%
TGCATAATCCTCGTTACATA+TGG + chr4.2:11383103-11383122 MS.gene030825:intron 35.0%
TTAGATATCACGCTATCACT+TGG + chr4.2:11383265-11383284 MS.gene030825:CDS 35.0%
TTAGCCACCAAACATCATTA+AGG + chr4.2:11382739-11382758 MS.gene030825:intron 35.0%
TTCTCCTTAATGATGTTTGG+TGG - chr4.2:11382746-11382765 None:intergenic 35.0%
TTGCATACGGAGAAACAAAA+AGG + chr4.2:11383831-11383850 MS.gene030825:CDS 35.0%
! CAATAAAAGTGACAGGGTTT+TGG - chr4.2:11383775-11383794 None:intergenic 35.0%
! GGCATTTTACTTTCTTCTGA+AGG + chr4.2:11382429-11382448 MS.gene030825:CDS 35.0%
! GTAATGGGAGTTATTGCATA+CGG + chr4.2:11383818-11383837 MS.gene030825:CDS 35.0%
! TATATTTCCAGATCTGGAGT+GGG - chr4.2:11381998-11382017 None:intergenic 35.0%
! TATGTTTTCTTGTGGCTCTT+TGG + chr4.2:11381405-11381424 MS.gene030825:CDS 35.0%
! TTCATTTTCCATGGATCCTT+TGG - chr4.2:11380873-11380892 None:intergenic 35.0%
!!! CAAAACCCTGTCACTTTTAT+TGG + chr4.2:11383773-11383792 MS.gene030825:CDS 35.0%
AAAACATACCCCACTTGCAA+TGG - chr4.2:11381810-11381829 None:intergenic 40.0%
AATCCAAACAAGTGAAACCC+AGG - chr4.2:11382357-11382376 None:intergenic 40.0%
AGATTTGAAAGCTCTTGCAG+CGG - chr4.2:11382400-11382419 None:intergenic 40.0%
CAGGTATTAGGCAATGCAAA+AGG + chr4.2:11383716-11383735 MS.gene030825:intron 40.0%
CATACGGAGAAACAAAAAGG+AGG + chr4.2:11383834-11383853 MS.gene030825:CDS 40.0%
CCAAAAAAATATGGGGAGGA+AGG - chr4.2:11383064-11383083 None:intergenic 40.0%
CCATGCCAATAAAAGTGACA+GGG - chr4.2:11383781-11383800 None:intergenic 40.0%
CTATATTTCCAGATCTGGAG+TGG - chr4.2:11381999-11382018 None:intergenic 40.0%
GCAAAAACAGCAGTGAAGAA+AGG - chr4.2:11381716-11381735 None:intergenic 40.0%
GGAAAATGAAAACAAGGGCA+CGG + chr4.2:11380883-11380902 MS.gene030825:CDS 40.0%
GGCTACTCAGTTACTGTAAT+GGG + chr4.2:11383803-11383822 MS.gene030825:CDS 40.0%
GTTCTTTGCCATATGTAACG+AGG - chr4.2:11383114-11383133 None:intergenic 40.0%
GTTTCTTTCAACCAAGCTGT+AGG + chr4.2:11381680-11381699 MS.gene030825:CDS 40.0%
TAGCAGATAGCCAGATTGTT+TGG + chr4.2:11382115-11382134 MS.gene030825:intron 40.0%
TCATCCATTTCAACCTACCA+GGG + chr4.2:11383150-11383169 MS.gene030825:intron 40.0%
TCTTACAGCATGAGATCCAA+AGG + chr4.2:11380854-11380873 MS.gene030825:CDS 40.0%
TGACACATTGTGAGGAAGAT+TGG - chr4.2:11381497-11381516 None:intergenic 40.0%
TGGAATCAAATCAGGGAAGA+TGG + chr4.2:11381352-11381371 MS.gene030825:CDS 40.0%
TGGCTACTCAGTTACTGTAA+TGG + chr4.2:11383802-11383821 MS.gene030825:CDS 40.0%
TTCATCCATTTCAACCTACC+AGG + chr4.2:11383149-11383168 MS.gene030825:intron 40.0%
! TAAGTTTGCTCCATATGCTG+CGG - chr4.2:11383335-11383354 None:intergenic 40.0%
!! CTACTTTTAAGAGAGAGGCT+TGG + chr4.2:11381744-11381763 MS.gene030825:CDS 40.0%
!! GAGCTTGATTTGTCGTAACA+CGG - chr4.2:11381223-11381242 None:intergenic 40.0%
!!! CCTTCCTCCCCATATTTTTT+TGG + chr4.2:11383061-11383080 MS.gene030825:intron 40.0%
!!! CTTTGTTTTTTGTGGGTCTG+TGG + chr4.2:11381625-11381644 MS.gene030825:CDS 40.0%
!!! GCCCTTGTTTTCATTTTCCA+TGG - chr4.2:11380882-11380901 None:intergenic 40.0%
AACACATTGCAAATCCAGGG+AGG + chr4.2:11381326-11381345 MS.gene030825:intron 45.0%
AACAGCAGTGAAGAAAGGTG+TGG - chr4.2:11381711-11381730 None:intergenic 45.0%
AGGGCACGGTTAAAGAAAGT+GGG + chr4.2:11380897-11380916 MS.gene030825:CDS 45.0%
CATGAGATCCAAAGGATCCA+TGG + chr4.2:11380862-11380881 MS.gene030825:CDS 45.0%
CATTGAGTTCAACTTCTCCC+TGG - chr4.2:11383170-11383189 None:intergenic 45.0%
CTGCGATTGGAGACATATAC+AGG - chr4.2:11383201-11383220 None:intergenic 45.0%
CTGTCATGTGACACATTGTG+AGG - chr4.2:11381505-11381524 None:intergenic 45.0%
GAGGAGGTGGAATCAAATCA+GGG + chr4.2:11381345-11381364 MS.gene030825:CDS 45.0%
GCCATGCCAATAAAAGTGAC+AGG - chr4.2:11383782-11383801 None:intergenic 45.0%
TACAAGTGCTTTGACACTCC+AGG + chr4.2:11383378-11383397 MS.gene030825:CDS 45.0%
TCGTAACACGGTGAGTTTGT+CGG - chr4.2:11381211-11381230 None:intergenic 45.0%
TTTCTGGATCTGCACTCATC+TGG + chr4.2:11382072-11382091 MS.gene030825:intron 45.0%
! AAGGGCACGGTTAAAGAAAG+TGG + chr4.2:11380896-11380915 MS.gene030825:CDS 45.0%
! CACTTTCGGTTTGCCATTGA+AGG - chr4.2:11383513-11383532 None:intergenic 45.0%
! GTTGCCTGCAGTAGTTTTCA+TGG + chr4.2:11383231-11383250 MS.gene030825:CDS 45.0%
! TTCTCCCTGGTAGGTTGAAA+TGG - chr4.2:11383157-11383176 None:intergenic 45.0%
!! AATACGTTGTTGGTGATGGC+AGG + chr4.2:11382326-11382345 MS.gene030825:intron 45.0%
!! ATACGTTGTTGGTGATGGCA+GGG + chr4.2:11382327-11382346 MS.gene030825:intron 45.0%
!!! AAGTGACAGGGTTTTGGAAC+AGG - chr4.2:11383769-11383788 None:intergenic 45.0%
!!! CCCTGTCACTTTTATTGGCA+TGG + chr4.2:11383778-11383797 MS.gene030825:CDS 45.0%
!!! GTCACTTTTATTGGCATGGC+TGG + chr4.2:11383782-11383801 MS.gene030825:CDS 45.0%
!!! GTTTTTTGTGGGTCTGTGGT+TGG + chr4.2:11381629-11381648 MS.gene030825:CDS 45.0%
ACATTGCAAATCCAGGGAGG+AGG + chr4.2:11381329-11381348 MS.gene030825:intron 50.0%
ATGGCAACACCAGCAACAAC+AGG - chr4.2:11381791-11381810 None:intergenic 50.0%
ATTTGATTCCACCTCCTCCC+TGG - chr4.2:11381343-11381362 None:intergenic 50.0%
CCATAATCCCACTCCAGATC+TGG + chr4.2:11381988-11382007 MS.gene030825:intron 50.0%
CTTAACTCAGCCGCAGCATA+TGG + chr4.2:11383322-11383341 MS.gene030825:CDS 50.0%
GAGCCTGGGTTTCACTTGTT+TGG + chr4.2:11382351-11382370 MS.gene030825:CDS 50.0%
GAGTTCAACTTCTCCCTGGT+AGG - chr4.2:11383166-11383185 None:intergenic 50.0%
GCTCTTGTTCCTGTTGTTGC+TGG + chr4.2:11381779-11381798 MS.gene030825:CDS 50.0%
GGAGGAGGTGGAATCAAATC+AGG + chr4.2:11381344-11381363 MS.gene030825:CDS 50.0%
GGCTCCATGAAAACTACTGC+AGG - chr4.2:11383238-11383257 None:intergenic 50.0%
GGGCACGGTTAAAGAAAGTG+GGG + chr4.2:11380898-11380917 MS.gene030825:CDS 50.0%
! CCAGATCTGGAGTGGGATTA+TGG - chr4.2:11381991-11382010 None:intergenic 50.0%
! TTTTGTGGGTCTGTGGTTGG+TGG + chr4.2:11381632-11381651 MS.gene030825:CDS 50.0%
!! CTGGTGTTGCCATTGCAAGT+GGG + chr4.2:11381798-11381817 MS.gene030825:CDS 50.0%
!! GAGGAAGGCACCTCAAGTTA+TGG - chr4.2:11383049-11383068 None:intergenic 50.0%
!! TGGTGTTGCCATTGCAAGTG+GGG + chr4.2:11381799-11381818 MS.gene030825:CDS 50.0%
CTCTTGCAGCGGTTGCACTT+AGG - chr4.2:11382389-11382408 None:intergenic 55.0%
GTGTGGTTGCACCTACAGCT+TGG - chr4.2:11381694-11381713 None:intergenic 55.0%
TTGCAAATCCAGGGAGGAGG+TGG + chr4.2:11381332-11381351 MS.gene030825:intron 55.0%
!! GCTGGTGTTGCCATTGCAAG+TGG + chr4.2:11381797-11381816 MS.gene030825:CDS 55.0%
! GGTGATGGCAGGGTGAGCCT+GGG + chr4.2:11382337-11382356 MS.gene030825:intron 65.0%
!! TGGTGATGGCAGGGTGAGCC+TGG + chr4.2:11382336-11382355 MS.gene030825:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 11380839 11383865 11380839 ID=MS.gene030825
chr4.2 mRNA 11380839 11383865 11380839 ID=MS.gene030825.t1;Parent=MS.gene030825
chr4.2 exon 11380839 11380919 11380839 ID=MS.gene030825.t1.exon1;Parent=MS.gene030825.t1
chr4.2 CDS 11380839 11380919 11380839 ID=cds.MS.gene030825.t1;Parent=MS.gene030825.t1
chr4.2 exon 11381344 11381820 11381344 ID=MS.gene030825.t1.exon2;Parent=MS.gene030825.t1
chr4.2 CDS 11381344 11381820 11381344 ID=cds.MS.gene030825.t1;Parent=MS.gene030825.t1
chr4.2 exon 11382348 11382451 11382348 ID=MS.gene030825.t1.exon3;Parent=MS.gene030825.t1
chr4.2 CDS 11382348 11382451 11382348 ID=cds.MS.gene030825.t1;Parent=MS.gene030825.t1
chr4.2 exon 11383171 11383399 11383171 ID=MS.gene030825.t1.exon4;Parent=MS.gene030825.t1
chr4.2 CDS 11383171 11383399 11383171 ID=cds.MS.gene030825.t1;Parent=MS.gene030825.t1
chr4.2 exon 11383719 11383865 11383719 ID=MS.gene030825.t1.exon5;Parent=MS.gene030825.t1
chr4.2 CDS 11383719 11383865 11383719 ID=cds.MS.gene030825.t1;Parent=MS.gene030825.t1
Gene Sequence

>MS.gene030825

ATGAGTTCACATAGTTCTTACAGCATGAGATCCAAAGGATCCATGGAAAATGAAAACAAGGGCACGGTTAAAGAAAGTGGGGTAAGTAAAACATAATTGATTCTTTCAATCTTTTGACACCCATGTGTTGAAGAAATTACTTTGATAATCTGATTTTGTTGAAGCTACATAATGTGTATTTGATCTCGCCGTAATTTTAACAAAATCACGATGATTCATGTGGTGATATTGGCGAAAATTAAAGTTACATTTTGAAGCTTCAATAAAATCACATTGGCATAAATCATAATGATTTCATCAAATTTATCGTGATATTAAACATGCATAAAGTGTAGCTATTGTTAAAAATTAATGTGAGACGTCGTGATTCCGACAAACTCACCGTGTTACGACAAATCAAGCTCATAAATAAGGGTAAAAAATAAAGGAAAAAGATGTTTTTTGTCAAAATTTTATTTGTGCAGTTCAAAATGATGACAGTTTGATAAACACATTGCAAATCCAGGGAGGAGGTGGAATCAAATCAGGGAAGATGGTGACACCAAACAACAAAGAATTCATGTTCATATGTTTTCTTGTGGCTCTTTGGTACTCATCAAACATTGGTGTCATTCTTCTAAACAAGTACCTTATCTCAAATTATGGTTTCAAGTTTCCAATCTTCCTCACAATGTGTCACATGACAGCTTGTGCTATTTTTAGTTACATCTCCATTGTGTTCTTTAAGATTGTTCCTCAACAGATGATTAAATCAAGGTCACAGTTCTTAAAGGTTGCAACTTTGAGCTTTGTTTTTTGTGGGTCTGTGGTTGGTGGCAATATCTCTCTCAAGTATTTGGCTGTTTCTTTCAACCAAGCTGTAGGTGCAACCACACCTTTCTTCACTGCTGTTTTTGCTTATTTAGCTACTTTTAAGAGAGAGGCTTGGATCACATATGTTGCTCTTGTTCCTGTTGTTGCTGGTGTTGCCATTGCAAGTGGGGTATGTTTTTTTTGTTTGATTTGATGGAATTATAAGCTCAATACATTTGATTTATTATAATTGCTTATAATATAGGTGTGTTGATTGGTACATGTTTATGAGTGAATGAAATTATACATAGATGTTTTGGTTTTGATTTTGAAATTATGGATGTTTTGGTATCACATCCATAATCCCACTCCAGATCTGGAAATATAGTTAATAAGATCTCAGTTTTTCAAATCTGTGACATTTGGATTTTGGATTTTAATTTTCTGGATCTGCACTCATCTGGTTTATTATTATAATATCATATAGCAGATAGCCAGATTGTTTGGTATTTTTATAATCAATTAGCATTTAGGTACTTAATTAAATTGTTATTTCATCTATTCATGTGGATAACATACAAAACCTACCATAAAAATTGTCATGAATTAGGCTCTTTTTAGTTATCATTTCATGTACTTCCACACCATATGATAATTTTAATTTGTTATTGGACCAACATGGTGTACATTTTTTTAATACGTTGTTGGTGATGGCAGGGTGAGCCTGGGTTTCACTTGTTTGGATTTATCATGTGCCTAAGTGCAACCGCTGCAAGAGCTTTCAAATCTGTTCTTCAGGGCATTTTACTTTCTTCTGAAGGGTAAAATATTTTGCACTATATCTATGATTTTTAAATCATATTGCTTGAAAATATTTAGTTATTGTGAACTGTGGATTCAAGAGTATCTGCTTTAATTAAAATTTTATAGTACTGTTCTAAAGGCAATGTTTATTATTCAGCTCTTTGTTGGTATTAGAAGTTTGTAACTCGCTAATTGAAATTTGAGTTGCTGATAATTTTTGTCTAATATGTTCCTTGAATCTCATTTTTTATATGTGAGAATGATGAAAATTTGTTCGAATCTACGTTTTTCGTGAACTACACTTTTAGCCACCAAACATCATTAAGGAGAACACCCTTTCACAGCTTATTAAGCATATTGATATCTCATGTTATGTGTTTTACTACCCATTGTTCATACACAATTGAAAAAGCCAAAAGTTTTAATACACTGATGTTTCTTGTTGAAAACTTTTCATTGTTTCTATGTTTTCTACTAGTTACATGTATGTCGTTTGAGTGAGATGTGTATATCATTTACCAGCTTAACATTGCTTTTGCTTTATCATTTCCTTCTTTACTTTGCGATAAATATTGGATATTTTTGTGTTACTTCCAAGCTATAGAAATTGACCATAACTTGAGGTGCCTTCCTCCCCATATTTTTTTGGATTCTTAATACAACAAAATTGCATAATCCTCGTTACATATGGCAAAGAACTGCTTCTTATAATGTTTCATCCATTTCAACCTACCAGGGAGAAGTTGAACTCAATGAATTTGCTCCTGTATATGTCTCCAATCGCAGTCGTATTTTTGTTGCCTGCAGTAGTTTTCATGGAGCCGAATGTTTTAGATATCACGCTATCACTTGGAAAAGAACATAAATTTATGGGCGTGCTTCTTTTTCTTAACTCAGCCGCAGCATATGGAGCAAACTTAACAAACTTCTTGGTCACTAAACATACAAGTGCTTTGACACTCCAGGTTTGTCTTTTTTTATCTCTTGTTTCCACAAATAAAAATCATGAGCACTTATTTACCTCAAAGCTAAAAATATAATTATTAAGACAAAAGTTTATAAATTATTATTACAACCTTCAATGGCAAACCGAAAGTGACTTTTATGTACATTTTATATAGCATATATTAGCACATTATATGTTTAAATAACAAAAAGTGTCTTGACTCGTATAATTCGACGCAAAATCAAAACAATTCATGTCAACGTGTTCCTATTGCTAACTCAGCTTTGTTAATTTGTGCAACTGATATACTGAATTCTCTGTCAAATTATGTTAATCAGGTATTAGGCAATGCAAAAGGTGCTGTAGCTGTTGTTATCTCAATACTCCTGTTCCAAAACCCTGTCACTTTTATTGGCATGGCTGGCTACTCAGTTACTGTAATGGGAGTTATTGCATACGGAGAAACAAAAAGGAGGTTTAGATGA
Protein sequence

>MS.gene030825.t1

MSSHSSYSMRSKGSMENENKGTVKESGGGGGIKSGKMVTPNNKEFMFICFLVALWYSSNIGVILLNKYLISNYGFKFPIFLTMCHMTACAIFSYISIVFFKIVPQQMIKSRSQFLKVATLSFVFCGSVVGGNISLKYLAVSFNQAVGATTPFFTAVFAYLATFKREAWITYVALVPVVAGVAIASGGEPGFHLFGFIMCLSATAARAFKSVLQGILLSSEGEKLNSMNLLLYMSPIAVVFLLPAVVFMEPNVLDITLSLGKEHKFMGVLLFLNSAAAYGANLTNFLVTKHTSALTLQVLGNAKGAVAVVISILLFQNPVTFIGMAGYSVTVMGVIAYGETKRRFR