Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28061.t1 | XP_013446789.2 | 100 | 345 | 0 | 0 | 1 | 345 | 1 | 345 | 4.10E-183 | 650.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28061.t1 | Q9FYE5 | 79.0 | 309 | 65 | 0 | 37 | 345 | 1 | 309 | 2.6e-133 | 476.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28061.t1 | A0A2Z6MSA2 | 91.4 | 337 | 29 | 0 | 9 | 345 | 1 | 337 | 1.1e-166 | 595.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene28061 | 0.815573 | 8.63E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene57307 | MS.gene28061 | PPI |
| MS.gene011488 | MS.gene28061 | PPI |
| MS.gene28061 | MS.gene032018 | PPI |
| MS.gene28061 | MS.gene061794 | PPI |
| MS.gene28061 | MS.gene69267 | PPI |
| MS.gene28061 | MS.gene008096 | PPI |
| MS.gene28061 | MS.gene030825 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28061.t1 | MTR_8g090130 | 100.000 | 309 | 0 | 0 | 37 | 345 | 1 | 309 | 0.0 | 619 |
| MS.gene28061.t1 | MTR_5g081710 | 73.490 | 298 | 77 | 2 | 47 | 343 | 8 | 304 | 1.78e-160 | 451 |
| MS.gene28061.t1 | MTR_3g462070 | 70.805 | 298 | 87 | 0 | 46 | 343 | 8 | 305 | 2.55e-157 | 443 |
| MS.gene28061.t1 | MTR_3g070000 | 73.038 | 293 | 79 | 0 | 51 | 343 | 28 | 320 | 2.13e-155 | 439 |
| MS.gene28061.t1 | MTR_4g018760 | 68.966 | 290 | 90 | 0 | 55 | 344 | 20 | 309 | 1.61e-145 | 413 |
| MS.gene28061.t1 | MTR_4g101860 | 59.184 | 294 | 120 | 0 | 50 | 343 | 55 | 348 | 5.40e-118 | 345 |
| MS.gene28061.t1 | MTR_3g072380 | 32.646 | 291 | 188 | 3 | 55 | 342 | 22 | 307 | 2.28e-48 | 166 |
| MS.gene28061.t1 | MTR_1g030320 | 32.404 | 287 | 192 | 1 | 55 | 341 | 21 | 305 | 4.83e-48 | 165 |
| MS.gene28061.t1 | MTR_0011s0320 | 35.473 | 296 | 177 | 7 | 52 | 341 | 18 | 305 | 2.86e-35 | 132 |
| MS.gene28061.t1 | MTR_4g114360 | 34.007 | 297 | 180 | 9 | 52 | 341 | 18 | 305 | 2.85e-33 | 126 |
| MS.gene28061.t1 | MTR_3g107470 | 31.562 | 320 | 202 | 6 | 27 | 341 | 2 | 309 | 5.09e-33 | 125 |
| MS.gene28061.t1 | MTR_3g072380 | 34.463 | 177 | 114 | 1 | 55 | 231 | 22 | 196 | 1.26e-29 | 114 |
| MS.gene28061.t1 | MTR_0662s0010 | 34.457 | 267 | 159 | 9 | 52 | 311 | 18 | 275 | 3.08e-28 | 111 |
| MS.gene28061.t1 | MTR_7g110380 | 29.260 | 311 | 210 | 4 | 37 | 343 | 4 | 308 | 3.38e-27 | 110 |
| MS.gene28061.t1 | MTR_2g070400 | 25.796 | 314 | 218 | 6 | 37 | 343 | 1 | 306 | 1.12e-22 | 97.4 |
| MS.gene28061.t1 | MTR_4g123900 | 28.322 | 286 | 197 | 3 | 61 | 343 | 24 | 304 | 1.75e-22 | 97.4 |
| MS.gene28061.t1 | MTR_6g005480 | 27.217 | 327 | 224 | 5 | 21 | 342 | 91 | 408 | 5.25e-19 | 87.8 |
| MS.gene28061.t1 | MTR_4g123900 | 27.941 | 272 | 188 | 3 | 61 | 329 | 24 | 290 | 5.29e-19 | 86.3 |
| MS.gene28061.t1 | MTR_4g105630 | 26.578 | 301 | 201 | 9 | 51 | 342 | 88 | 377 | 2.16e-17 | 82.8 |
| MS.gene28061.t1 | MTR_8g016090 | 24.172 | 302 | 203 | 7 | 50 | 334 | 171 | 463 | 3.40e-16 | 79.7 |
| MS.gene28061.t1 | MTR_2g038410 | 29.966 | 297 | 177 | 11 | 50 | 337 | 63 | 337 | 1.09e-15 | 77.8 |
| MS.gene28061.t1 | MTR_4g105630 | 25.773 | 291 | 196 | 9 | 51 | 332 | 88 | 367 | 2.53e-14 | 73.6 |
| MS.gene28061.t1 | MTR_3g077640 | 24.242 | 330 | 225 | 7 | 22 | 342 | 89 | 402 | 3.35e-13 | 70.5 |
| MS.gene28061.t1 | MTR_5g044220 | 25.649 | 308 | 204 | 11 | 50 | 343 | 106 | 402 | 8.81e-13 | 69.3 |
| MS.gene28061.t1 | MTR_3g095130 | 23.693 | 287 | 211 | 4 | 58 | 343 | 24 | 303 | 1.90e-11 | 64.7 |
| MS.gene28061.t1 | MTR_4g088350 | 25.418 | 299 | 203 | 11 | 55 | 345 | 106 | 392 | 2.55e-11 | 64.7 |
| MS.gene28061.t1 | MTR_8g016090 | 24.691 | 243 | 154 | 6 | 112 | 334 | 180 | 413 | 2.69e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28061.t1 | AT5G04160 | 78.964 | 309 | 65 | 0 | 37 | 345 | 1 | 309 | 0.0 | 506 |
| MS.gene28061.t1 | AT3G10290 | 78.947 | 304 | 64 | 0 | 42 | 345 | 52 | 355 | 0.0 | 505 |
| MS.gene28061.t1 | AT3G11320 | 74.744 | 293 | 74 | 0 | 51 | 343 | 14 | 306 | 3.66e-158 | 445 |
| MS.gene28061.t1 | AT5G05820 | 73.038 | 293 | 79 | 0 | 51 | 343 | 14 | 306 | 2.66e-154 | 436 |
| MS.gene28061.t1 | AT1G12500 | 53.988 | 326 | 150 | 0 | 18 | 343 | 29 | 354 | 1.42e-121 | 354 |
| MS.gene28061.t1 | AT1G21870 | 33.564 | 289 | 188 | 3 | 55 | 342 | 22 | 307 | 6.64e-48 | 165 |
| MS.gene28061.t1 | AT1G77610 | 33.219 | 292 | 185 | 5 | 55 | 342 | 16 | 301 | 4.53e-47 | 162 |
| MS.gene28061.t1 | AT5G11230 | 34.228 | 298 | 182 | 7 | 52 | 343 | 22 | 311 | 1.75e-35 | 132 |
| MS.gene28061.t1 | AT5G25400 | 32.817 | 323 | 198 | 8 | 27 | 343 | 2 | 311 | 3.66e-34 | 129 |
| MS.gene28061.t1 | AT4G32390 | 33.127 | 323 | 197 | 8 | 27 | 343 | 2 | 311 | 5.29e-34 | 128 |
| MS.gene28061.t1 | AT2G25520 | 35.135 | 296 | 178 | 7 | 52 | 341 | 22 | 309 | 5.34e-32 | 123 |
| MS.gene28061.t1 | AT1G53660 | 29.066 | 289 | 190 | 6 | 61 | 343 | 30 | 309 | 1.41e-26 | 108 |
| MS.gene28061.t1 | AT1G53660 | 29.066 | 289 | 190 | 6 | 61 | 343 | 48 | 327 | 1.85e-26 | 108 |
| MS.gene28061.t1 | AT3G17430 | 29.268 | 287 | 193 | 5 | 61 | 343 | 25 | 305 | 1.35e-25 | 106 |
| MS.gene28061.t1 | AT3G17430 | 29.268 | 287 | 193 | 5 | 61 | 343 | 25 | 305 | 1.35e-25 | 106 |
| MS.gene28061.t1 | AT1G53660 | 28.832 | 274 | 182 | 5 | 74 | 343 | 11 | 275 | 4.56e-25 | 103 |
| MS.gene28061.t1 | AT3G14410 | 28.472 | 288 | 196 | 5 | 61 | 343 | 28 | 310 | 1.70e-23 | 99.8 |
| MS.gene28061.t1 | AT1G48230 | 29.617 | 287 | 192 | 5 | 61 | 343 | 25 | 305 | 4.47e-23 | 99.0 |
| MS.gene28061.t1 | AT1G53660 | 31.481 | 216 | 136 | 4 | 131 | 343 | 9 | 215 | 6.52e-22 | 93.2 |
| MS.gene28061.t1 | AT5G57100 | 30.169 | 295 | 177 | 9 | 60 | 343 | 76 | 352 | 8.63e-20 | 89.7 |
| MS.gene28061.t1 | AT3G01550 | 25.076 | 327 | 230 | 6 | 21 | 342 | 57 | 373 | 4.14e-18 | 85.1 |
| MS.gene28061.t1 | AT5G57100 | 31.633 | 196 | 121 | 6 | 60 | 250 | 76 | 263 | 1.56e-16 | 79.3 |
| MS.gene28061.t1 | AT1G48230 | 29.075 | 227 | 153 | 4 | 117 | 341 | 10 | 230 | 1.19e-15 | 76.6 |
| MS.gene28061.t1 | AT3G01550 | 24.465 | 327 | 227 | 7 | 21 | 342 | 57 | 368 | 6.91e-15 | 75.5 |
| MS.gene28061.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene28061.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene28061.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene28061.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene28061.t1 | AT5G55950 | 30.584 | 291 | 169 | 10 | 60 | 337 | 69 | 339 | 6.03e-14 | 72.8 |
| MS.gene28061.t1 | AT5G55950 | 30.584 | 291 | 169 | 10 | 60 | 337 | 9 | 279 | 9.76e-14 | 71.6 |
| MS.gene28061.t1 | AT5G46110 | 26.087 | 345 | 229 | 14 | 13 | 345 | 71 | 401 | 9.09e-13 | 69.3 |
| MS.gene28061.t1 | AT5G46110 | 26.087 | 345 | 229 | 14 | 13 | 345 | 71 | 401 | 9.66e-13 | 69.3 |
| MS.gene28061.t1 | AT5G55950 | 32.828 | 198 | 116 | 7 | 60 | 250 | 69 | 256 | 1.00e-12 | 68.6 |
| MS.gene28061.t1 | AT5G57100 | 36.879 | 141 | 78 | 5 | 60 | 195 | 76 | 210 | 1.70e-12 | 67.4 |
| MS.gene28061.t1 | AT5G46110 | 26.821 | 302 | 197 | 13 | 54 | 345 | 1 | 288 | 1.92e-12 | 67.4 |
| MS.gene28061.t1 | AT4G39390 | 26.190 | 294 | 195 | 8 | 58 | 343 | 25 | 304 | 9.34e-12 | 65.9 |
| MS.gene28061.t1 | AT4G39390 | 25.850 | 294 | 196 | 7 | 58 | 343 | 29 | 308 | 1.12e-11 | 65.5 |
| MS.gene28061.t1 | AT4G39390 | 25.850 | 294 | 196 | 7 | 58 | 343 | 29 | 308 | 1.12e-11 | 65.5 |
| MS.gene28061.t1 | AT4G09810 | 22.930 | 314 | 223 | 6 | 33 | 343 | 6 | 303 | 4.31e-11 | 63.9 |
Find 62 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAAGAACATAAATTTA+TGG | 0.161882 | 4.4:+10854070 | MS.gene28061:CDS |
| AAGTACCTTATCTCAAATTA+TGG | 0.221981 | 4.4:+10852244 | MS.gene28061:CDS |
| ATCAAGGTCACAGTTCTTAA+AGG | 0.247185 | 4.4:+10852372 | MS.gene28061:CDS |
| TGGTGATGGCAGGGTGAGCC+TGG | 0.262017 | 4.4:+10853121 | MS.gene28061:intron |
| CAATATCTCTCTCAAGTATT+TGG | 0.275503 | 4.4:+10852438 | MS.gene28061:CDS |
| AGCTTTCAAATCTGTTCTTC+AGG | 0.288805 | 4.4:+10853192 | MS.gene28061:CDS |
| GAGCCTGGGTTTCACTTGTT+TGG | 0.295030 | 4.4:+10853136 | MS.gene28061:CDS |
| AATTATGTTAATCAGGTATT+AGG | 0.309168 | 4.4:+10854489 | MS.gene28061:intron |
| CAATAAAAGTGACAGGGTTT+TGG | 0.309718 | 4.4:-10854557 | None:intergenic |
| GCTCTTGTTCCTGTTGTTGC+TGG | 0.312689 | 4.4:+10852562 | MS.gene28061:CDS |
| CTTAACTCAGCCGCAGCATA+TGG | 0.344628 | 4.4:+10854107 | MS.gene28061:CDS |
| GGAAAAGAACATAAATTTAT+GGG | 0.351125 | 4.4:+10854071 | MS.gene28061:CDS |
| AGCAAACTTAACAAACTTCT+TGG | 0.373328 | 4.4:+10854130 | MS.gene28061:CDS |
| GGCTACTCAGTTACTGTAAT+GGG | 0.394558 | 4.4:+10854588 | MS.gene28061:CDS |
| AACATGAATTCTTTGTTGTT+TGG | 0.399155 | 4.4:-10852163 | None:intergenic |
| GGAGGAGGTGGAATCAAATC+AGG | 0.422337 | 4.4:+10852127 | MS.gene28061:CDS |
| GCTTTCAAATCTGTTCTTCA+GGG | 0.437125 | 4.4:+10853193 | MS.gene28061:CDS |
| TTGCATACGGAGAAACAAAA+AGG | 0.447859 | 4.4:+10854616 | MS.gene28061:CDS |
| TGACACATTGTGAGGAAGAT+TGG | 0.449241 | 4.4:-10852277 | None:intergenic |
| TGAAACCATAATTTGAGATA+AGG | 0.466205 | 4.4:-10852249 | None:intergenic |
| GGTGATGGCAGGGTGAGCCT+GGG | 0.473562 | 4.4:+10853122 | MS.gene28061:intron |
| TAAGAACTATGTGAACTCAT+TGG | 0.491159 | 4.4:-10851633 | None:intergenic |
| GCCATGCCAATAAAAGTGAC+AGG | 0.492901 | 4.4:-10854564 | None:intergenic |
| ATGGCAACACCAGCAACAAC+AGG | 0.493877 | 4.4:-10852571 | None:intergenic |
| CTCTTGCAGCGGTTGCACTT+AGG | 0.496429 | 4.4:-10853171 | None:intergenic |
| TTGCAAATCCAGGGAGGAGG+TGG | 0.497230 | 4.4:+10852115 | MS.gene28061:intron |
| AGCGTGATATCTAAAACATT+CGG | 0.497597 | 4.4:-10854041 | None:intergenic |
| TGGCTACTCAGTTACTGTAA+TGG | 0.499480 | 4.4:+10854587 | MS.gene28061:CDS |
| CTGCGATTGGAGACATATAC+AGG | 0.502629 | 4.4:-10853983 | None:intergenic |
| TACAAGTGCTTTGACACTCC+AGG | 0.510037 | 4.4:+10854163 | MS.gene28061:CDS |
| TTAGATATCACGCTATCACT+TGG | 0.514237 | 4.4:+10854050 | MS.gene28061:CDS |
| GTTTCTTTCAACCAAGCTGT+AGG | 0.516484 | 4.4:+10852463 | MS.gene28061:CDS |
| CTCAACAGATGATTAAATCA+AGG | 0.523888 | 4.4:+10852356 | MS.gene28061:CDS |
| GGCTCCATGAAAACTACTGC+AGG | 0.527890 | 4.4:-10854020 | None:intergenic |
| TGGAATCAAATCAGGGAAGA+TGG | 0.528633 | 4.4:+10852135 | MS.gene28061:CDS |
| CAGGTATTAGGCAATGCAAA+AGG | 0.533740 | 4.4:+10854501 | MS.gene28061:intron |
| AAGGGCACGGTTAAAGAAAG+TGG | 0.535006 | 4.4:+10851693 | MS.gene28061:CDS |
| CATGAGATCCAAAGGATCCA+TGG | 0.542594 | 4.4:+10851659 | MS.gene28061:CDS |
| GCTGGTGTTGCCATTGCAAG+TGG | 0.549715 | 4.4:+10852580 | MS.gene28061:CDS |
| CTTGATTTAATCATCTGTTG+AGG | 0.555444 | 4.4:-10852355 | None:intergenic |
| AAAACATACCCCACTTGCAA+TGG | 0.557860 | 4.4:-10852590 | None:intergenic |
| CTGGTGTTGCCATTGCAAGT+GGG | 0.559180 | 4.4:+10852581 | MS.gene28061:CDS |
| CTTTGGTACTCATCAAACAT+TGG | 0.563810 | 4.4:+10852205 | MS.gene28061:CDS |
| ATCCATGGAAAATGAAAACA+AGG | 0.586176 | 4.4:+10851674 | MS.gene28061:CDS |
| TGGTGTTGCCATTGCAAGTG+GGG | 0.597605 | 4.4:+10852582 | MS.gene28061:CDS |
| GTAATGGGAGTTATTGCATA+CGG | 0.599804 | 4.4:+10854603 | MS.gene28061:CDS |
| AGGGCACGGTTAAAGAAAGT+GGG | 0.600109 | 4.4:+10851694 | MS.gene28061:CDS |
| TCTTACAGCATGAGATCCAA+AGG | 0.603872 | 4.4:+10851651 | MS.gene28061:CDS |
| AGAGATATTGCCACCAACCA+CGG | 0.608135 | 4.4:-10852425 | None:intergenic |
| ACATTGCAAATCCAGGGAGG+AGG | 0.617057 | 4.4:+10852112 | MS.gene28061:intron |
| AATCCAAACAAGTGAAACCC+AGG | 0.628421 | 4.4:-10853139 | None:intergenic |
| GGAAAATGAAAACAAGGGCA+CGG | 0.640574 | 4.4:+10851680 | MS.gene28061:CDS |
| CCATGCCAATAAAAGTGACA+GGG | 0.651043 | 4.4:-10854563 | None:intergenic |
| GTGTGGTTGCACCTACAGCT+TGG | 0.651188 | 4.4:-10852474 | None:intergenic |
| AACAATCTTAAAGAACACAA+TGG | 0.654847 | 4.4:-10852332 | None:intergenic |
| GAGGAGGTGGAATCAAATCA+GGG | 0.660705 | 4.4:+10852128 | MS.gene28061:CDS |
| TAAGTTTGCTCCATATGCTG+CGG | 0.688898 | 4.4:-10854117 | None:intergenic |
| AGATTTGAAAGCTCTTGCAG+CGG | 0.693952 | 4.4:-10853182 | None:intergenic |
| AACAGCAGTGAAGAAAGGTG+TGG | 0.696609 | 4.4:-10852491 | None:intergenic |
| GGGCACGGTTAAAGAAAGTG+GGG | 0.727668 | 4.4:+10851695 | MS.gene28061:CDS |
| CTGTCATGTGACACATTGTG+AGG | 0.735310 | 4.4:-10852285 | None:intergenic |
| TCCATGGAAAATGAAAACAA+GGG | 0.738782 | 4.4:+10851675 | MS.gene28061:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATTAAAATTATCATA+TGG | - | chr4.4:10853063-10853082 | None:intergenic | 10.0% |
| !! | ATTATAATTGCTTATAATAT+AGG | + | chr4.4:10852660-10852679 | MS.gene28061:intron | 10.0% |
| !!! | TGATAATTTTAATTTGTTAT+TGG | + | chr4.4:10853065-10853084 | MS.gene28061:intron | 10.0% |
| !! | ATTAAGAATCCAAAAAAATA+TGG | - | chr4.4:10853858-10853877 | None:intergenic | 15.0% |
| !! | TAAATAAGGGTAAAAAATAA+AGG | + | chr4.4:10852027-10852046 | MS.gene28061:intron | 15.0% |
| !! | TTAAGAATCCAAAAAAATAT+GGG | - | chr4.4:10853857-10853876 | None:intergenic | 15.0% |
| !! | TTTATAATCAATTAGCATTT+AGG | + | chr4.4:10852928-10852947 | MS.gene28061:intron | 15.0% |
| !!! | ACATTTTTTTAATATGTTGT+TGG | + | chr4.4:10853101-10853120 | MS.gene28061:intron | 15.0% |
| !!! | TAATTATATTTTTAGCTTTG+AGG | - | chr4.4:10854243-10854262 | None:intergenic | 15.0% |
| !!! | TATTTTTTACCCTTATTTAT+GGG | - | chr4.4:10852026-10852045 | None:intergenic | 15.0% |
| !!! | TTATTTTTTACCCTTATTTA+TGG | - | chr4.4:10852027-10852046 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGTTTGATTTGA+TGG | + | chr4.4:10852611-10852630 | MS.gene28061:intron | 15.0% |
| !! | AATTATGTTAATCAGGTATT+AGG | + | chr4.4:10854489-10854508 | MS.gene28061:intron | 20.0% |
| !! | ATTAAAATTATCATATGGTG+TGG | - | chr4.4:10853058-10853077 | None:intergenic | 20.0% |
| !! | ATTATTATTACAACCTTCAA+TGG | + | chr4.4:10854282-10854301 | MS.gene28061:intron | 20.0% |
| !! | CATAAAAATTGTCATGAATT+AGG | + | chr4.4:10853004-10853023 | MS.gene28061:intron | 20.0% |
| !! | CATTCTCACATATAAAAAAT+GGG | - | chr4.4:10853462-10853481 | None:intergenic | 20.0% |
| !! | CTATGATTTCTAAATCATAT+TGG | + | chr4.4:10853258-10853277 | MS.gene28061:intron | 20.0% |
| !! | GGAAAAGAACATAAATTTAT+GGG | + | chr4.4:10854071-10854090 | MS.gene28061:CDS | 20.0% |
| !! | TAAGAATCCAAAAAAATATG+GGG | - | chr4.4:10853856-10853875 | None:intergenic | 20.0% |
| !! | TATAAAAATACCAAACAATC+TGG | - | chr4.4:10852914-10852933 | None:intergenic | 20.0% |
| !! | TCATTCTCACATATAAAAAA+TGG | - | chr4.4:10853463-10853482 | None:intergenic | 20.0% |
| !! | TGGAAAAGAACATAAATTTA+TGG | + | chr4.4:10854070-10854089 | MS.gene28061:CDS | 20.0% |
| !! | TTGTTAAAAATTAATGTGAG+AGG | + | chr4.4:10851974-10851993 | MS.gene28061:intron | 20.0% |
| !!! | ATTTTATAGTACTGTTCTAA+AGG | + | chr4.4:10853337-10853356 | MS.gene28061:intron | 20.0% |
| !!! | CTAATTCATGACAATTTTTA+TGG | - | chr4.4:10853006-10853025 | None:intergenic | 20.0% |
| !!! | GAAATTATACATAGATGTTT+TGG | + | chr4.4:10852714-10852733 | MS.gene28061:intron | 20.0% |
| !!! | GATTTTGGATTTTAATTTTC+TGG | + | chr4.4:10852842-10852861 | MS.gene28061:intron | 20.0% |
| !!! | TCGTGATTTTGTTAAAATTA+CGG | - | chr4.4:10851827-10851846 | None:intergenic | 20.0% |
| !!! | TGGTTTTGATTTTGAAATTA+TGG | + | chr4.4:10852734-10852753 | MS.gene28061:intron | 20.0% |
| !!! | TTTTGAAATTATGGATGTTT+TGG | + | chr4.4:10852743-10852762 | MS.gene28061:intron | 20.0% |
| ! | AACAATCTTAAAGAACACAA+TGG | - | chr4.4:10852335-10852354 | None:intergenic | 25.0% |
| ! | AAGCTTCAATAAAATCACAT+TGG | + | chr4.4:10851890-10851909 | MS.gene28061:intron | 25.0% |
| ! | AAGTACCTTATCTCAAATTA+TGG | + | chr4.4:10852244-10852263 | MS.gene28061:CDS | 25.0% |
| ! | ATTAACTATATTTCCAGATC+TGG | - | chr4.4:10852790-10852809 | None:intergenic | 25.0% |
| ! | CATATAAAAAATGGGATTCA+AGG | - | chr4.4:10853454-10853473 | None:intergenic | 25.0% |
| ! | CTTTACTTTGCGATAAATAT+TGG | + | chr4.4:10853773-10853792 | MS.gene28061:intron | 25.0% |
| ! | TAAAAAAATGTACACCATGT+TGG | - | chr4.4:10853092-10853111 | None:intergenic | 25.0% |
| ! | TATTTAGTTATTGTGAACTG+TGG | + | chr4.4:10853288-10853307 | MS.gene28061:intron | 25.0% |
| ! | TATTTATCGCAAAGTAAAGA+AGG | - | chr4.4:10853772-10853791 | None:intergenic | 25.0% |
| ! | TGTGTCAAATTATGTTAATC+AGG | + | chr4.4:10854482-10854501 | MS.gene28061:intron | 25.0% |
| ! | TTCAATTGTGTATGAACAAT+GGG | - | chr4.4:10853608-10853627 | None:intergenic | 25.0% |
| ! | TTTATTATTCAGCTCTTTGT+TGG | + | chr4.4:10853365-10853384 | MS.gene28061:intron | 25.0% |
| ! | TTTCAATTGTGTATGAACAA+TGG | - | chr4.4:10853609-10853628 | None:intergenic | 25.0% |
| !! | ATGTACATAAAAGTCACTTT+CGG | - | chr4.4:10854312-10854331 | None:intergenic | 25.0% |
| !! | CATCAGTGTATTAAAACTTT+TGG | - | chr4.4:10853635-10853654 | None:intergenic | 25.0% |
| !! | TATAATATAGGTGTGTTGAT+TGG | + | chr4.4:10852672-10852691 | MS.gene28061:intron | 25.0% |
| !! | TGAAACCATAATTTGAGATA+AGG | - | chr4.4:10852252-10852271 | None:intergenic | 25.0% |
| !! | TTCATGACAATTTTTATGGT+AGG | - | chr4.4:10853002-10853021 | None:intergenic | 25.0% |
| !!! | AACATGAATTCTTTGTTGTT+TGG | - | chr4.4:10852166-10852185 | None:intergenic | 25.0% |
| !!! | TGTTATTTCATCTATTCATG+TGG | + | chr4.4:10852963-10852982 | MS.gene28061:intron | 25.0% |
| !!! | TTTTAATATGTTGTTGGTGA+TGG | + | chr4.4:10853107-10853126 | MS.gene28061:intron | 25.0% |
| !!! | TTTTTCAAATCTGTGACATT+TGG | + | chr4.4:10852820-10852839 | MS.gene28061:intron | 25.0% |
| AAAGTAAGTTCTTCAACACA+TGG | - | chr4.4:10851759-10851778 | None:intergenic | 30.0% | |
| AAGTAAGTTCTTCAACACAT+GGG | - | chr4.4:10851758-10851777 | None:intergenic | 30.0% | |
| AGCAAACTTAACAAACTTCT+TGG | + | chr4.4:10854130-10854149 | MS.gene28061:CDS | 30.0% | |
| AGTTCAAAATGATGACAGTT+TGG | + | chr4.4:10852084-10852103 | MS.gene28061:intron | 30.0% | |
| ATCCATGGAAAATGAAAACA+AGG | + | chr4.4:10851674-10851693 | MS.gene28061:CDS | 30.0% | |
| ATGCTTAATAAGCTGTGAAA+GGG | - | chr4.4:10853556-10853575 | None:intergenic | 30.0% | |
| CAATATCTCTCTCAAGTATT+TGG | + | chr4.4:10852438-10852457 | MS.gene28061:CDS | 30.0% | |
| CTCAACAGATGATTAAATCA+AGG | + | chr4.4:10852356-10852375 | MS.gene28061:CDS | 30.0% | |
| CTTGATTTAATCATCTGTTG+AGG | - | chr4.4:10852358-10852377 | None:intergenic | 30.0% | |
| GAGATAAAAAAAGACAAACC+TGG | - | chr4.4:10854184-10854203 | None:intergenic | 30.0% | |
| TAGAAATTGACCATAACTTG+AGG | + | chr4.4:10853821-10853840 | MS.gene28061:intron | 30.0% | |
| TATGCTTAATAAGCTGTGAA+AGG | - | chr4.4:10853557-10853576 | None:intergenic | 30.0% | |
| TATGGTCAATTTCTATAGCT+TGG | - | chr4.4:10853816-10853835 | None:intergenic | 30.0% | |
| TCCATGGAAAATGAAAACAA+GGG | + | chr4.4:10851675-10851694 | MS.gene28061:CDS | 30.0% | |
| ! | AATCTGTGACATTTGGATTT+TGG | + | chr4.4:10852827-10852846 | MS.gene28061:intron | 30.0% |
| ! | AGCGTGATATCTAAAACATT+CGG | - | chr4.4:10854044-10854063 | None:intergenic | 30.0% |
| ! | CATGTTCATATGTTTTCTTG+TGG | + | chr4.4:10852180-10852199 | MS.gene28061:CDS | 30.0% |
| ! | GCATTTTACTTTCTTCTGAA+GGG | + | chr4.4:10853215-10853234 | MS.gene28061:CDS | 30.0% |
| !! | AATTTGTTATTGGACCAACA+TGG | + | chr4.4:10853075-10853094 | MS.gene28061:intron | 30.0% |
| !! | GTGCTCATGATTTTTATTTG+TGG | - | chr4.4:10854213-10854232 | None:intergenic | 30.0% |
| !!! | ACTTTGAGCTTTGTTTTTTG+TGG | + | chr4.4:10852400-10852419 | MS.gene28061:CDS | 30.0% |
| !!! | CTTTGAGCTTTGTTTTTTGT+GGG | + | chr4.4:10852401-10852420 | MS.gene28061:CDS | 30.0% |
| !!! | TTTAGCTACTTTTAAGAGAG+AGG | + | chr4.4:10852522-10852541 | MS.gene28061:CDS | 30.0% |
| AACAAAAATACGACTGCGAT+TGG | - | chr4.4:10853999-10854018 | None:intergenic | 35.0% | |
| AACAAAGCTGAGTTAGCAAT+AGG | - | chr4.4:10854435-10854454 | None:intergenic | 35.0% | |
| AAGCAAAAGCAATGTTAAGC+TGG | - | chr4.4:10853741-10853760 | None:intergenic | 35.0% | |
| AGCTTTCAAATCTGTTCTTC+AGG | + | chr4.4:10853192-10853211 | MS.gene28061:CDS | 35.0% | |
| ATCAAGGTCACAGTTCTTAA+AGG | + | chr4.4:10852372-10852391 | MS.gene28061:CDS | 35.0% | |
| CAAAATCACGATGATTCATG+TGG | + | chr4.4:10851836-10851855 | MS.gene28061:intron | 35.0% | |
| CTTTGGTACTCATCAAACAT+TGG | + | chr4.4:10852205-10852224 | MS.gene28061:CDS | 35.0% | |
| GAATCCAAAAAAATATGGGG+AGG | - | chr4.4:10853853-10853872 | None:intergenic | 35.0% | |
| GATGATTCATGTGGTGATAT+TGG | + | chr4.4:10851845-10851864 | MS.gene28061:intron | 35.0% | |
| GCTTTCAAATCTGTTCTTCA+GGG | + | chr4.4:10853193-10853212 | MS.gene28061:CDS | 35.0% | |
| GTAAACACATTGCAAATCCA+GGG | + | chr4.4:10852106-10852125 | MS.gene28061:intron | 35.0% | |
| TGCATAATCCTCGTTACATA+TGG | + | chr4.4:10853888-10853907 | MS.gene28061:intron | 35.0% | |
| TTAGATATCACGCTATCACT+TGG | + | chr4.4:10854050-10854069 | MS.gene28061:CDS | 35.0% | |
| TTGCATACGGAGAAACAAAA+AGG | + | chr4.4:10854616-10854635 | MS.gene28061:CDS | 35.0% | |
| ! | CAATAAAAGTGACAGGGTTT+TGG | - | chr4.4:10854560-10854579 | None:intergenic | 35.0% |
| ! | GGCATTTTACTTTCTTCTGA+AGG | + | chr4.4:10853214-10853233 | MS.gene28061:CDS | 35.0% |
| ! | GTAATGGGAGTTATTGCATA+CGG | + | chr4.4:10854603-10854622 | MS.gene28061:CDS | 35.0% |
| ! | TATATTTCCAGATCTGGAGT+GGG | - | chr4.4:10852784-10852803 | None:intergenic | 35.0% |
| ! | TATGTTTTCTTGTGGCTCTT+TGG | + | chr4.4:10852188-10852207 | MS.gene28061:CDS | 35.0% |
| ! | TTACCCTTATTTATGGGCTT+CGG | - | chr4.4:10852020-10852039 | None:intergenic | 35.0% |
| ! | TTCATTTTCCATGGATCCTT+TGG | - | chr4.4:10851670-10851689 | None:intergenic | 35.0% |
| !!! | CAAAACCCTGTCACTTTTAT+TGG | + | chr4.4:10854558-10854577 | MS.gene28061:CDS | 35.0% |
| AAAACATACCCCACTTGCAA+TGG | - | chr4.4:10852593-10852612 | None:intergenic | 40.0% | |
| AATCCAAACAAGTGAAACCC+AGG | - | chr4.4:10853142-10853161 | None:intergenic | 40.0% | |
| AGATTTGAAAGCTCTTGCAG+CGG | - | chr4.4:10853185-10853204 | None:intergenic | 40.0% | |
| CAGGTATTAGGCAATGCAAA+AGG | + | chr4.4:10854501-10854520 | MS.gene28061:intron | 40.0% | |
| CATACGGAGAAACAAAAAGG+AGG | + | chr4.4:10854619-10854638 | MS.gene28061:CDS | 40.0% | |
| CCAAAAAAATATGGGGAGGA+AGG | - | chr4.4:10853849-10853868 | None:intergenic | 40.0% | |
| CCATGCCAATAAAAGTGACA+GGG | - | chr4.4:10854566-10854585 | None:intergenic | 40.0% | |
| CTATATTTCCAGATCTGGAG+TGG | - | chr4.4:10852785-10852804 | None:intergenic | 40.0% | |
| GCAAAAACAGCAGTGAAGAA+AGG | - | chr4.4:10852499-10852518 | None:intergenic | 40.0% | |
| GGAAAATGAAAACAAGGGCA+CGG | + | chr4.4:10851680-10851699 | MS.gene28061:CDS | 40.0% | |
| GGCTACTCAGTTACTGTAAT+GGG | + | chr4.4:10854588-10854607 | MS.gene28061:CDS | 40.0% | |
| GGTAAACACATTGCAAATCC+AGG | + | chr4.4:10852105-10852124 | MS.gene28061:intron | 40.0% | |
| GTTCTTTGCCATATGTAACG+AGG | - | chr4.4:10853899-10853918 | None:intergenic | 40.0% | |
| GTTTCTTTCAACCAAGCTGT+AGG | + | chr4.4:10852463-10852482 | MS.gene28061:CDS | 40.0% | |
| TAGCAGATAGCCAGATTGTT+TGG | + | chr4.4:10852901-10852920 | MS.gene28061:intron | 40.0% | |
| TCACCGAAGCCCATAAATAA+GGG | + | chr4.4:10852014-10852033 | MS.gene28061:intron | 40.0% | |
| TCATCCATTTCAACCTACCA+GGG | + | chr4.4:10853935-10853954 | MS.gene28061:intron | 40.0% | |
| TCTTACAGCATGAGATCCAA+AGG | + | chr4.4:10851651-10851670 | MS.gene28061:CDS | 40.0% | |
| TGACACATTGTGAGGAAGAT+TGG | - | chr4.4:10852280-10852299 | None:intergenic | 40.0% | |
| TGGAATCAAATCAGGGAAGA+TGG | + | chr4.4:10852135-10852154 | MS.gene28061:CDS | 40.0% | |
| TGGCTACTCAGTTACTGTAA+TGG | + | chr4.4:10854587-10854606 | MS.gene28061:CDS | 40.0% | |
| TTAGCCACCAAACATCATCA+AGG | + | chr4.4:10853524-10853543 | MS.gene28061:intron | 40.0% | |
| TTCATCCATTTCAACCTACC+AGG | + | chr4.4:10853934-10853953 | MS.gene28061:intron | 40.0% | |
| ! | TAAGTTTGCTCCATATGCTG+CGG | - | chr4.4:10854120-10854139 | None:intergenic | 40.0% |
| !! | AATATGTTGTTGGTGATGGC+AGG | + | chr4.4:10853111-10853130 | MS.gene28061:intron | 40.0% |
| !! | ATATGTTGTTGGTGATGGCA+GGG | + | chr4.4:10853112-10853131 | MS.gene28061:intron | 40.0% |
| !! | CTACTTTTAAGAGAGAGGCT+TGG | + | chr4.4:10852527-10852546 | MS.gene28061:CDS | 40.0% |
| !! | GTGTTCTCCTTGATGATGTT+TGG | - | chr4.4:10853534-10853553 | None:intergenic | 40.0% |
| !! | TTCTCCTTGATGATGTTTGG+TGG | - | chr4.4:10853531-10853550 | None:intergenic | 40.0% |
| !!! | CCTTCCTCCCCATATTTTTT+TGG | + | chr4.4:10853846-10853865 | MS.gene28061:intron | 40.0% |
| !!! | GCCCTTGTTTTCATTTTCCA+TGG | - | chr4.4:10851679-10851698 | None:intergenic | 40.0% |
| AACACATTGCAAATCCAGGG+AGG | + | chr4.4:10852109-10852128 | MS.gene28061:intron | 45.0% | |
| AACAGCAGTGAAGAAAGGTG+TGG | - | chr4.4:10852494-10852513 | None:intergenic | 45.0% | |
| AGAGATATTGCCACCAACCA+CGG | - | chr4.4:10852428-10852447 | None:intergenic | 45.0% | |
| AGGGCACGGTTAAAGAAAGT+GGG | + | chr4.4:10851694-10851713 | MS.gene28061:CDS | 45.0% | |
| CATGAGATCCAAAGGATCCA+TGG | + | chr4.4:10851659-10851678 | MS.gene28061:CDS | 45.0% | |
| CATTGAGTTCAACTTCTCCC+TGG | - | chr4.4:10853955-10853974 | None:intergenic | 45.0% | |
| CTCACCGAAGCCCATAAATA+AGG | + | chr4.4:10852013-10852032 | MS.gene28061:intron | 45.0% | |
| CTGCGATTGGAGACATATAC+AGG | - | chr4.4:10853986-10854005 | None:intergenic | 45.0% | |
| CTGTCATGTGACACATTGTG+AGG | - | chr4.4:10852288-10852307 | None:intergenic | 45.0% | |
| GAGGAGGTGGAATCAAATCA+GGG | + | chr4.4:10852128-10852147 | MS.gene28061:CDS | 45.0% | |
| GCCATGCCAATAAAAGTGAC+AGG | - | chr4.4:10854567-10854586 | None:intergenic | 45.0% | |
| TACAAGTGCTTTGACACTCC+AGG | + | chr4.4:10854163-10854182 | MS.gene28061:CDS | 45.0% | |
| TTTCTGGATCTGCACTCATC+TGG | + | chr4.4:10852858-10852877 | MS.gene28061:intron | 45.0% | |
| ! | AAGGGCACGGTTAAAGAAAG+TGG | + | chr4.4:10851693-10851712 | MS.gene28061:CDS | 45.0% |
| ! | CACTTTCGGTTTGCCATTGA+AGG | - | chr4.4:10854298-10854317 | None:intergenic | 45.0% |
| ! | GTTGCCTGCAGTAGTTTTCA+TGG | + | chr4.4:10854016-10854035 | MS.gene28061:CDS | 45.0% |
| ! | TTCTCCCTGGTAGGTTGAAA+TGG | - | chr4.4:10853942-10853961 | None:intergenic | 45.0% |
| !!! | AAGTGACAGGGTTTTGGAAC+AGG | - | chr4.4:10854554-10854573 | None:intergenic | 45.0% |
| !!! | CCCTGTCACTTTTATTGGCA+TGG | + | chr4.4:10854563-10854582 | MS.gene28061:CDS | 45.0% |
| !!! | CTTTGTTTTTTGTGGGTCCG+TGG | + | chr4.4:10852408-10852427 | MS.gene28061:CDS | 45.0% |
| !!! | GTCACTTTTATTGGCATGGC+TGG | + | chr4.4:10854567-10854586 | MS.gene28061:CDS | 45.0% |
| ACATTGCAAATCCAGGGAGG+AGG | + | chr4.4:10852112-10852131 | MS.gene28061:intron | 50.0% | |
| ATGGCAACACCAGCAACAAC+AGG | - | chr4.4:10852574-10852593 | None:intergenic | 50.0% | |
| ATGGGCTTCGGTGAGTTTGT+CGG | - | chr4.4:10852008-10852027 | None:intergenic | 50.0% | |
| ATTTGATTCCACCTCCTCCC+TGG | - | chr4.4:10852126-10852145 | None:intergenic | 50.0% | |
| CCATAATCCCACTCCAGATC+TGG | + | chr4.4:10852774-10852793 | MS.gene28061:intron | 50.0% | |
| CTTAACTCAGCCGCAGCATA+TGG | + | chr4.4:10854107-10854126 | MS.gene28061:CDS | 50.0% | |
| GAGCCTGGGTTTCACTTGTT+TGG | + | chr4.4:10853136-10853155 | MS.gene28061:CDS | 50.0% | |
| GAGTTCAACTTCTCCCTGGT+AGG | - | chr4.4:10853951-10853970 | None:intergenic | 50.0% | |
| GCTCTTGTTCCTGTTGTTGC+TGG | + | chr4.4:10852562-10852581 | MS.gene28061:CDS | 50.0% | |
| GGAGGAGGTGGAATCAAATC+AGG | + | chr4.4:10852127-10852146 | MS.gene28061:CDS | 50.0% | |
| GGCTCCATGAAAACTACTGC+AGG | - | chr4.4:10854023-10854042 | None:intergenic | 50.0% | |
| GGGCACGGTTAAAGAAAGTG+GGG | + | chr4.4:10851695-10851714 | MS.gene28061:CDS | 50.0% | |
| ! | CCAGATCTGGAGTGGGATTA+TGG | - | chr4.4:10852777-10852796 | None:intergenic | 50.0% |
| !! | CTGGTGTTGCCATTGCAAGT+GGG | + | chr4.4:10852581-10852600 | MS.gene28061:CDS | 50.0% |
| !! | GAGGAAGGCACCTCAAGTTA+TGG | - | chr4.4:10853834-10853853 | None:intergenic | 50.0% |
| !! | TGGTGTTGCCATTGCAAGTG+GGG | + | chr4.4:10852582-10852601 | MS.gene28061:CDS | 50.0% |
| !!! | GTTTTTTGTGGGTCCGTGGT+TGG | + | chr4.4:10852412-10852431 | MS.gene28061:CDS | 50.0% |
| CTCTTGCAGCGGTTGCACTT+AGG | - | chr4.4:10853174-10853193 | None:intergenic | 55.0% | |
| GTGTGGTTGCACCTACAGCT+TGG | - | chr4.4:10852477-10852496 | None:intergenic | 55.0% | |
| TTGCAAATCCAGGGAGGAGG+TGG | + | chr4.4:10852115-10852134 | MS.gene28061:intron | 55.0% | |
| ! | TTTTGTGGGTCCGTGGTTGG+TGG | + | chr4.4:10852415-10852434 | MS.gene28061:CDS | 55.0% |
| !! | GCTGGTGTTGCCATTGCAAG+TGG | + | chr4.4:10852580-10852599 | MS.gene28061:CDS | 55.0% |
| ! | GGTGATGGCAGGGTGAGCCT+GGG | + | chr4.4:10853122-10853141 | MS.gene28061:intron | 65.0% |
| !! | TGGTGATGGCAGGGTGAGCC+TGG | + | chr4.4:10853121-10853140 | MS.gene28061:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 10851636 | 10854650 | 10851636 | ID=MS.gene28061 |
| chr4.4 | mRNA | 10851636 | 10854650 | 10851636 | ID=MS.gene28061.t1;Parent=MS.gene28061 |
| chr4.4 | exon | 10851636 | 10851716 | 10851636 | ID=MS.gene28061.t1.exon1;Parent=MS.gene28061.t1 |
| chr4.4 | CDS | 10851636 | 10851716 | 10851636 | ID=cds.MS.gene28061.t1;Parent=MS.gene28061.t1 |
| chr4.4 | exon | 10852127 | 10852603 | 10852127 | ID=MS.gene28061.t1.exon2;Parent=MS.gene28061.t1 |
| chr4.4 | CDS | 10852127 | 10852603 | 10852127 | ID=cds.MS.gene28061.t1;Parent=MS.gene28061.t1 |
| chr4.4 | exon | 10853133 | 10853236 | 10853133 | ID=MS.gene28061.t1.exon3;Parent=MS.gene28061.t1 |
| chr4.4 | CDS | 10853133 | 10853236 | 10853133 | ID=cds.MS.gene28061.t1;Parent=MS.gene28061.t1 |
| chr4.4 | exon | 10853956 | 10854184 | 10853956 | ID=MS.gene28061.t1.exon4;Parent=MS.gene28061.t1 |
| chr4.4 | CDS | 10853956 | 10854184 | 10853956 | ID=cds.MS.gene28061.t1;Parent=MS.gene28061.t1 |
| chr4.4 | exon | 10854504 | 10854650 | 10854504 | ID=MS.gene28061.t1.exon5;Parent=MS.gene28061.t1 |
| chr4.4 | CDS | 10854504 | 10854650 | 10854504 | ID=cds.MS.gene28061.t1;Parent=MS.gene28061.t1 |
| Gene Sequence |
| Protein sequence |
