Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57307.t1 | XP_013446789.2 | 100 | 345 | 0 | 0 | 1 | 345 | 1 | 345 | 4.10E-183 | 650.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57307.t1 | Q9FYE5 | 79.0 | 309 | 65 | 0 | 37 | 345 | 1 | 309 | 2.6e-133 | 476.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57307.t1 | A0A2Z6MSA2 | 91.4 | 337 | 29 | 0 | 9 | 345 | 1 | 337 | 1.1e-166 | 595.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene57307 | 0.854335 | 1.32E-61 | -1.69E-46 |
| MS.gene050807 | MS.gene57307 | 0.811616 | 6.41E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene57307 | 0.81857 | 1.83E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene57307 | 0.806047 | 9.94E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene57307 | MS.gene69267 | PPI |
| MS.gene57307 | MS.gene008096 | PPI |
| MS.gene57307 | MS.gene030825 | PPI |
| MS.gene57307 | MS.gene28061 | PPI |
| MS.gene011488 | MS.gene57307 | PPI |
| MS.gene57307 | MS.gene032018 | PPI |
| MS.gene57307 | MS.gene061794 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57307.t1 | MTR_8g090130 | 100.000 | 309 | 0 | 0 | 37 | 345 | 1 | 309 | 0.0 | 619 |
| MS.gene57307.t1 | MTR_5g081710 | 73.490 | 298 | 77 | 2 | 47 | 343 | 8 | 304 | 1.78e-160 | 451 |
| MS.gene57307.t1 | MTR_3g462070 | 70.805 | 298 | 87 | 0 | 46 | 343 | 8 | 305 | 2.55e-157 | 443 |
| MS.gene57307.t1 | MTR_3g070000 | 73.038 | 293 | 79 | 0 | 51 | 343 | 28 | 320 | 2.13e-155 | 439 |
| MS.gene57307.t1 | MTR_4g018760 | 68.966 | 290 | 90 | 0 | 55 | 344 | 20 | 309 | 1.61e-145 | 413 |
| MS.gene57307.t1 | MTR_4g101860 | 59.184 | 294 | 120 | 0 | 50 | 343 | 55 | 348 | 5.40e-118 | 345 |
| MS.gene57307.t1 | MTR_3g072380 | 32.646 | 291 | 188 | 3 | 55 | 342 | 22 | 307 | 2.28e-48 | 166 |
| MS.gene57307.t1 | MTR_1g030320 | 32.404 | 287 | 192 | 1 | 55 | 341 | 21 | 305 | 4.83e-48 | 165 |
| MS.gene57307.t1 | MTR_0011s0320 | 35.473 | 296 | 177 | 7 | 52 | 341 | 18 | 305 | 2.86e-35 | 132 |
| MS.gene57307.t1 | MTR_4g114360 | 34.007 | 297 | 180 | 9 | 52 | 341 | 18 | 305 | 2.85e-33 | 126 |
| MS.gene57307.t1 | MTR_3g107470 | 31.562 | 320 | 202 | 6 | 27 | 341 | 2 | 309 | 5.09e-33 | 125 |
| MS.gene57307.t1 | MTR_3g072380 | 34.463 | 177 | 114 | 1 | 55 | 231 | 22 | 196 | 1.26e-29 | 114 |
| MS.gene57307.t1 | MTR_0662s0010 | 34.457 | 267 | 159 | 9 | 52 | 311 | 18 | 275 | 3.08e-28 | 111 |
| MS.gene57307.t1 | MTR_7g110380 | 29.260 | 311 | 210 | 4 | 37 | 343 | 4 | 308 | 3.38e-27 | 110 |
| MS.gene57307.t1 | MTR_2g070400 | 25.796 | 314 | 218 | 6 | 37 | 343 | 1 | 306 | 1.12e-22 | 97.4 |
| MS.gene57307.t1 | MTR_4g123900 | 28.322 | 286 | 197 | 3 | 61 | 343 | 24 | 304 | 1.75e-22 | 97.4 |
| MS.gene57307.t1 | MTR_6g005480 | 27.217 | 327 | 224 | 5 | 21 | 342 | 91 | 408 | 5.25e-19 | 87.8 |
| MS.gene57307.t1 | MTR_4g123900 | 27.941 | 272 | 188 | 3 | 61 | 329 | 24 | 290 | 5.29e-19 | 86.3 |
| MS.gene57307.t1 | MTR_4g105630 | 26.578 | 301 | 201 | 9 | 51 | 342 | 88 | 377 | 2.16e-17 | 82.8 |
| MS.gene57307.t1 | MTR_8g016090 | 24.172 | 302 | 203 | 7 | 50 | 334 | 171 | 463 | 3.40e-16 | 79.7 |
| MS.gene57307.t1 | MTR_2g038410 | 29.966 | 297 | 177 | 11 | 50 | 337 | 63 | 337 | 1.09e-15 | 77.8 |
| MS.gene57307.t1 | MTR_4g105630 | 25.773 | 291 | 196 | 9 | 51 | 332 | 88 | 367 | 2.53e-14 | 73.6 |
| MS.gene57307.t1 | MTR_3g077640 | 24.242 | 330 | 225 | 7 | 22 | 342 | 89 | 402 | 3.35e-13 | 70.5 |
| MS.gene57307.t1 | MTR_5g044220 | 25.649 | 308 | 204 | 11 | 50 | 343 | 106 | 402 | 8.81e-13 | 69.3 |
| MS.gene57307.t1 | MTR_3g095130 | 23.693 | 287 | 211 | 4 | 58 | 343 | 24 | 303 | 1.90e-11 | 64.7 |
| MS.gene57307.t1 | MTR_4g088350 | 25.418 | 299 | 203 | 11 | 55 | 345 | 106 | 392 | 2.55e-11 | 64.7 |
| MS.gene57307.t1 | MTR_8g016090 | 24.691 | 243 | 154 | 6 | 112 | 334 | 180 | 413 | 2.69e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57307.t1 | AT5G04160 | 78.964 | 309 | 65 | 0 | 37 | 345 | 1 | 309 | 0.0 | 506 |
| MS.gene57307.t1 | AT3G10290 | 78.947 | 304 | 64 | 0 | 42 | 345 | 52 | 355 | 0.0 | 505 |
| MS.gene57307.t1 | AT3G11320 | 74.744 | 293 | 74 | 0 | 51 | 343 | 14 | 306 | 3.66e-158 | 445 |
| MS.gene57307.t1 | AT5G05820 | 73.038 | 293 | 79 | 0 | 51 | 343 | 14 | 306 | 2.66e-154 | 436 |
| MS.gene57307.t1 | AT1G12500 | 53.988 | 326 | 150 | 0 | 18 | 343 | 29 | 354 | 1.42e-121 | 354 |
| MS.gene57307.t1 | AT1G21870 | 33.564 | 289 | 188 | 3 | 55 | 342 | 22 | 307 | 6.64e-48 | 165 |
| MS.gene57307.t1 | AT1G77610 | 33.219 | 292 | 185 | 5 | 55 | 342 | 16 | 301 | 4.53e-47 | 162 |
| MS.gene57307.t1 | AT5G11230 | 34.228 | 298 | 182 | 7 | 52 | 343 | 22 | 311 | 1.75e-35 | 132 |
| MS.gene57307.t1 | AT5G25400 | 32.817 | 323 | 198 | 8 | 27 | 343 | 2 | 311 | 3.66e-34 | 129 |
| MS.gene57307.t1 | AT4G32390 | 33.127 | 323 | 197 | 8 | 27 | 343 | 2 | 311 | 5.29e-34 | 128 |
| MS.gene57307.t1 | AT2G25520 | 35.135 | 296 | 178 | 7 | 52 | 341 | 22 | 309 | 5.34e-32 | 123 |
| MS.gene57307.t1 | AT1G53660 | 29.066 | 289 | 190 | 6 | 61 | 343 | 30 | 309 | 1.41e-26 | 108 |
| MS.gene57307.t1 | AT1G53660 | 29.066 | 289 | 190 | 6 | 61 | 343 | 48 | 327 | 1.85e-26 | 108 |
| MS.gene57307.t1 | AT3G17430 | 29.268 | 287 | 193 | 5 | 61 | 343 | 25 | 305 | 1.35e-25 | 106 |
| MS.gene57307.t1 | AT3G17430 | 29.268 | 287 | 193 | 5 | 61 | 343 | 25 | 305 | 1.35e-25 | 106 |
| MS.gene57307.t1 | AT1G53660 | 28.832 | 274 | 182 | 5 | 74 | 343 | 11 | 275 | 4.56e-25 | 103 |
| MS.gene57307.t1 | AT3G14410 | 28.472 | 288 | 196 | 5 | 61 | 343 | 28 | 310 | 1.70e-23 | 99.8 |
| MS.gene57307.t1 | AT1G48230 | 29.617 | 287 | 192 | 5 | 61 | 343 | 25 | 305 | 4.47e-23 | 99.0 |
| MS.gene57307.t1 | AT1G53660 | 31.481 | 216 | 136 | 4 | 131 | 343 | 9 | 215 | 6.52e-22 | 93.2 |
| MS.gene57307.t1 | AT5G57100 | 30.169 | 295 | 177 | 9 | 60 | 343 | 76 | 352 | 8.63e-20 | 89.7 |
| MS.gene57307.t1 | AT3G01550 | 25.076 | 327 | 230 | 6 | 21 | 342 | 57 | 373 | 4.14e-18 | 85.1 |
| MS.gene57307.t1 | AT5G57100 | 31.633 | 196 | 121 | 6 | 60 | 250 | 76 | 263 | 1.56e-16 | 79.3 |
| MS.gene57307.t1 | AT1G48230 | 29.075 | 227 | 153 | 4 | 117 | 341 | 10 | 230 | 1.19e-15 | 76.6 |
| MS.gene57307.t1 | AT3G01550 | 24.465 | 327 | 227 | 7 | 21 | 342 | 57 | 368 | 6.91e-15 | 75.5 |
| MS.gene57307.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene57307.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene57307.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene57307.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene57307.t1 | AT5G55950 | 30.584 | 291 | 169 | 10 | 60 | 337 | 69 | 339 | 6.03e-14 | 72.8 |
| MS.gene57307.t1 | AT5G55950 | 30.584 | 291 | 169 | 10 | 60 | 337 | 9 | 279 | 9.76e-14 | 71.6 |
| MS.gene57307.t1 | AT5G46110 | 26.087 | 345 | 229 | 14 | 13 | 345 | 71 | 401 | 9.09e-13 | 69.3 |
| MS.gene57307.t1 | AT5G46110 | 26.087 | 345 | 229 | 14 | 13 | 345 | 71 | 401 | 9.66e-13 | 69.3 |
| MS.gene57307.t1 | AT5G55950 | 32.828 | 198 | 116 | 7 | 60 | 250 | 69 | 256 | 1.00e-12 | 68.6 |
| MS.gene57307.t1 | AT5G57100 | 36.879 | 141 | 78 | 5 | 60 | 195 | 76 | 210 | 1.70e-12 | 67.4 |
| MS.gene57307.t1 | AT5G46110 | 26.821 | 302 | 197 | 13 | 54 | 345 | 1 | 288 | 1.92e-12 | 67.4 |
| MS.gene57307.t1 | AT4G39390 | 26.190 | 294 | 195 | 8 | 58 | 343 | 25 | 304 | 9.34e-12 | 65.9 |
| MS.gene57307.t1 | AT4G39390 | 25.850 | 294 | 196 | 7 | 58 | 343 | 29 | 308 | 1.12e-11 | 65.5 |
| MS.gene57307.t1 | AT4G39390 | 25.850 | 294 | 196 | 7 | 58 | 343 | 29 | 308 | 1.12e-11 | 65.5 |
| MS.gene57307.t1 | AT4G09810 | 22.930 | 314 | 223 | 6 | 33 | 343 | 6 | 303 | 4.31e-11 | 63.9 |
Find 61 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAAGAACATAAATTTA+TGG | 0.161882 | 4.1:+10402432 | MS.gene57307:CDS |
| AAGTACCTTATCTCAAATTA+TGG | 0.221981 | 4.1:+10400608 | MS.gene57307:CDS |
| ATCAAGGTCACAGTTCTTAA+AGG | 0.247185 | 4.1:+10400736 | MS.gene57307:CDS |
| TGGTGATGGCAGGGTGAGCC+TGG | 0.262017 | 4.1:+10401483 | MS.gene57307:intron |
| CAATATCTCTCTCAAGTATT+TGG | 0.275503 | 4.1:+10400802 | MS.gene57307:CDS |
| AGCTTTCAAATCTGTTCTTC+AGG | 0.288805 | 4.1:+10401554 | MS.gene57307:CDS |
| GAGCCTGGGTTTCACTTGTT+TGG | 0.295030 | 4.1:+10401498 | MS.gene57307:CDS |
| AATTATGTTAATCAGGTATT+AGG | 0.309168 | 4.1:+10402850 | MS.gene57307:intron |
| CAATAAAAGTGACAGGGTTT+TGG | 0.309718 | 4.1:-10402918 | None:intergenic |
| GCTCTTGTTCCTGTTGTTGC+TGG | 0.312689 | 4.1:+10400926 | MS.gene57307:CDS |
| CTTAACTCAGCCGCAGCATA+TGG | 0.344628 | 4.1:+10402469 | MS.gene57307:CDS |
| GGAAAAGAACATAAATTTAT+GGG | 0.351125 | 4.1:+10402433 | MS.gene57307:CDS |
| AGCAAACTTAACAAACTTCT+TGG | 0.373328 | 4.1:+10402492 | MS.gene57307:CDS |
| GGCTACTCAGTTACTGTAAT+GGG | 0.394558 | 4.1:+10402949 | MS.gene57307:CDS |
| AACATGAATTCTTTGTTGTT+TGG | 0.399155 | 4.1:-10400527 | None:intergenic |
| GGAGGAGGTGGAATCAAATC+AGG | 0.422337 | 4.1:+10400491 | MS.gene57307:CDS |
| GCTTTCAAATCTGTTCTTCA+GGG | 0.437125 | 4.1:+10401555 | MS.gene57307:CDS |
| TTGCATACGGAGAAACAAAA+AGG | 0.447859 | 4.1:+10402977 | MS.gene57307:CDS |
| TGACACATTGTGAGGAAGAT+TGG | 0.449241 | 4.1:-10400641 | None:intergenic |
| TGAAACCATAATTTGAGATA+AGG | 0.466205 | 4.1:-10400613 | None:intergenic |
| GGTGATGGCAGGGTGAGCCT+GGG | 0.473562 | 4.1:+10401484 | MS.gene57307:intron |
| TAAGAACTATGTGAACTCAT+TGG | 0.491159 | 4.1:-10399983 | None:intergenic |
| GCCATGCCAATAAAAGTGAC+AGG | 0.492901 | 4.1:-10402925 | None:intergenic |
| ATGGCAACACCAGCAACAAC+AGG | 0.493877 | 4.1:-10400935 | None:intergenic |
| CTCTTGCAGCGGTTGCACTT+AGG | 0.496429 | 4.1:-10401533 | None:intergenic |
| TTGCAAATCCAGGGAGGAGG+TGG | 0.497230 | 4.1:+10400479 | MS.gene57307:intron |
| AGCGTGATATCTAAAACATT+CGG | 0.497597 | 4.1:-10402403 | None:intergenic |
| TGGCTACTCAGTTACTGTAA+TGG | 0.499480 | 4.1:+10402948 | MS.gene57307:CDS |
| CTGCGATTGGAGACATATAC+AGG | 0.502629 | 4.1:-10402345 | None:intergenic |
| TACAAGTGCTTTGACACTCC+AGG | 0.510037 | 4.1:+10402525 | MS.gene57307:CDS |
| TTAGATATCACGCTATCACT+TGG | 0.514237 | 4.1:+10402412 | MS.gene57307:CDS |
| GTTTCTTTCAACCAAGCTGT+AGG | 0.516484 | 4.1:+10400827 | MS.gene57307:CDS |
| CTCAACAGATGATTAAATCA+AGG | 0.523888 | 4.1:+10400720 | MS.gene57307:CDS |
| GGCTCCATGAAAACTACTGC+AGG | 0.527890 | 4.1:-10402382 | None:intergenic |
| TGGAATCAAATCAGGGAAGA+TGG | 0.528633 | 4.1:+10400499 | MS.gene57307:CDS |
| CAGGTATTAGGCAATGCAAA+AGG | 0.533740 | 4.1:+10402862 | MS.gene57307:intron |
| AAGGGCACGGTTAAAGAAAG+TGG | 0.535006 | 4.1:+10400043 | MS.gene57307:CDS |
| CATGAGATCCAAAGGATCCA+TGG | 0.542594 | 4.1:+10400009 | MS.gene57307:CDS |
| GCTGGTGTTGCCATTGCAAG+TGG | 0.549715 | 4.1:+10400944 | MS.gene57307:CDS |
| CTTGATTTAATCATCTGTTG+AGG | 0.555444 | 4.1:-10400719 | None:intergenic |
| AAAACATACCCCACTTGCAA+TGG | 0.557860 | 4.1:-10400954 | None:intergenic |
| CTGGTGTTGCCATTGCAAGT+GGG | 0.559180 | 4.1:+10400945 | MS.gene57307:CDS |
| CTTTGGTACTCATCAAACAT+TGG | 0.563810 | 4.1:+10400569 | MS.gene57307:CDS |
| ATCCATGGAAAATGAAAACA+AGG | 0.586176 | 4.1:+10400024 | MS.gene57307:CDS |
| TGGTGTTGCCATTGCAAGTG+GGG | 0.597605 | 4.1:+10400946 | MS.gene57307:CDS |
| GTAATGGGAGTTATTGCATA+CGG | 0.599804 | 4.1:+10402964 | MS.gene57307:CDS |
| AGGGCACGGTTAAAGAAAGT+GGG | 0.600109 | 4.1:+10400044 | MS.gene57307:CDS |
| TCTTACAGCATGAGATCCAA+AGG | 0.603872 | 4.1:+10400001 | MS.gene57307:CDS |
| ACATTGCAAATCCAGGGAGG+AGG | 0.617057 | 4.1:+10400476 | MS.gene57307:intron |
| AATCCAAACAAGTGAAACCC+AGG | 0.628421 | 4.1:-10401501 | None:intergenic |
| GGAAAATGAAAACAAGGGCA+CGG | 0.640574 | 4.1:+10400030 | MS.gene57307:CDS |
| CCATGCCAATAAAAGTGACA+GGG | 0.651043 | 4.1:-10402924 | None:intergenic |
| GTGTGGTTGCACCTACAGCT+TGG | 0.651188 | 4.1:-10400838 | None:intergenic |
| AACAATCTTAAAGAACACAA+TGG | 0.654847 | 4.1:-10400696 | None:intergenic |
| GAGGAGGTGGAATCAAATCA+GGG | 0.660705 | 4.1:+10400492 | MS.gene57307:CDS |
| TAAGTTTGCTCCATATGCTG+CGG | 0.688898 | 4.1:-10402479 | None:intergenic |
| AGATTTGAAAGCTCTTGCAG+CGG | 0.693952 | 4.1:-10401544 | None:intergenic |
| AACAGCAGTGAAGAAAGGTG+TGG | 0.696609 | 4.1:-10400855 | None:intergenic |
| GGGCACGGTTAAAGAAAGTG+GGG | 0.727668 | 4.1:+10400045 | MS.gene57307:CDS |
| CTGTCATGTGACACATTGTG+AGG | 0.735310 | 4.1:-10400649 | None:intergenic |
| TCCATGGAAAATGAAAACAA+GGG | 0.738782 | 4.1:+10400025 | MS.gene57307:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATTAAAATTATCATA+TGG | - | chr4.1:10401425-10401444 | None:intergenic | 10.0% |
| !! | ATTATAATTGCTTATAATAT+AGG | + | chr4.1:10401021-10401040 | MS.gene57307:intron | 10.0% |
| !!! | TGATAATTTTAATTTGTTAT+TGG | + | chr4.1:10401427-10401446 | MS.gene57307:intron | 10.0% |
| !! | ATTAAGAATCCAAAAAAATA+TGG | - | chr4.1:10402220-10402239 | None:intergenic | 15.0% |
| !! | TAAATAAGGGTAAAAAATAA+AGG | + | chr4.1:10400391-10400410 | MS.gene57307:intron | 15.0% |
| !! | TTAAGAATCCAAAAAAATAT+GGG | - | chr4.1:10402219-10402238 | None:intergenic | 15.0% |
| !! | TTTATAATCAATTAGCATTT+AGG | + | chr4.1:10401289-10401308 | MS.gene57307:intron | 15.0% |
| !!! | ACATTTTTTTAATATGTTGT+TGG | + | chr4.1:10401463-10401482 | MS.gene57307:intron | 15.0% |
| !!! | TAATTATATTTTTAGCTTTG+AGG | - | chr4.1:10402604-10402623 | None:intergenic | 15.0% |
| !! | AATTATGTTAATCAGGTATT+AGG | + | chr4.1:10402850-10402869 | MS.gene57307:intron | 20.0% |
| !! | ATTAAAATTATCATATGGTG+TGG | - | chr4.1:10401420-10401439 | None:intergenic | 20.0% |
| !! | ATTATTATTACAACCTTCAA+TGG | + | chr4.1:10402643-10402662 | MS.gene57307:intron | 20.0% |
| !! | CATAAAAATTGTCATGAATT+AGG | + | chr4.1:10401366-10401385 | MS.gene57307:intron | 20.0% |
| !! | CATTCTCACATATAAAAAAT+GGG | - | chr4.1:10401824-10401843 | None:intergenic | 20.0% |
| !! | CTATGATTTCTAAATCATAT+TGG | + | chr4.1:10401620-10401639 | MS.gene57307:intron | 20.0% |
| !! | GGAAAAGAACATAAATTTAT+GGG | + | chr4.1:10402433-10402452 | MS.gene57307:CDS | 20.0% |
| !! | TAAGAATCCAAAAAAATATG+GGG | - | chr4.1:10402218-10402237 | None:intergenic | 20.0% |
| !! | TATAAAAATACCAAACAATC+TGG | - | chr4.1:10401275-10401294 | None:intergenic | 20.0% |
| !! | TCATTCTCACATATAAAAAA+TGG | - | chr4.1:10401825-10401844 | None:intergenic | 20.0% |
| !! | TGGAAAAGAACATAAATTTA+TGG | + | chr4.1:10402432-10402451 | MS.gene57307:CDS | 20.0% |
| !!! | ATTTTATAGAACTGTTCTAA+AGG | + | chr4.1:10401699-10401718 | MS.gene57307:intron | 20.0% |
| !!! | CTAATTCATGACAATTTTTA+TGG | - | chr4.1:10401368-10401387 | None:intergenic | 20.0% |
| !!! | GAAATTATACATAGATGTTT+TGG | + | chr4.1:10401075-10401094 | MS.gene57307:intron | 20.0% |
| !!! | GATTTTGGATTTTAATTTTC+TGG | + | chr4.1:10401203-10401222 | MS.gene57307:intron | 20.0% |
| !!! | GTTTTTTTTGTTTGATTTGA+TGG | + | chr4.1:10400972-10400991 | MS.gene57307:intron | 20.0% |
| !!! | TCGTGATTTTGTTAAAATTA+CGG | - | chr4.1:10400177-10400196 | None:intergenic | 20.0% |
| !!! | TGGTTTTGATTTTGAAATTA+TGG | + | chr4.1:10401095-10401114 | MS.gene57307:intron | 20.0% |
| !!! | TTTTGAAATTATGGATGTTT+TGG | + | chr4.1:10401104-10401123 | MS.gene57307:intron | 20.0% |
| ! | AAAGTAATTTCTTCAACACA+TGG | - | chr4.1:10400109-10400128 | None:intergenic | 25.0% |
| ! | AACAATCTTAAAGAACACAA+TGG | - | chr4.1:10400699-10400718 | None:intergenic | 25.0% |
| ! | AAGCTTCAATAAAATCACAT+TGG | + | chr4.1:10400240-10400259 | MS.gene57307:intron | 25.0% |
| ! | AAGTAATTTCTTCAACACAT+GGG | - | chr4.1:10400108-10400127 | None:intergenic | 25.0% |
| ! | AAGTACCTTATCTCAAATTA+TGG | + | chr4.1:10400608-10400627 | MS.gene57307:CDS | 25.0% |
| ! | ACAAATCAAGCTCATAAATA+AGG | + | chr4.1:10400377-10400396 | MS.gene57307:intron | 25.0% |
| ! | ATTAACTATATTTCCAGATC+TGG | - | chr4.1:10401151-10401170 | None:intergenic | 25.0% |
| ! | CAAATCAAGCTCATAAATAA+GGG | + | chr4.1:10400378-10400397 | MS.gene57307:intron | 25.0% |
| ! | CATATAAAAAATGGGATTCA+AGG | - | chr4.1:10401816-10401835 | None:intergenic | 25.0% |
| ! | CTTTACTTTGCGATAAATAT+TGG | + | chr4.1:10402135-10402154 | MS.gene57307:intron | 25.0% |
| ! | TAAAAAAATGTACACCATGT+TGG | - | chr4.1:10401454-10401473 | None:intergenic | 25.0% |
| ! | TATTTAGTTATTGTGAACTG+TGG | + | chr4.1:10401650-10401669 | MS.gene57307:intron | 25.0% |
| ! | TATTTATCGCAAAGTAAAGA+AGG | - | chr4.1:10402134-10402153 | None:intergenic | 25.0% |
| ! | TCTGTCAAATTATGTTAATC+AGG | + | chr4.1:10402843-10402862 | MS.gene57307:intron | 25.0% |
| ! | TTCAATTGTGTATGAACAAT+GGG | - | chr4.1:10401970-10401989 | None:intergenic | 25.0% |
| ! | TTTATTATTCAGCTCTTTGT+TGG | + | chr4.1:10401727-10401746 | MS.gene57307:intron | 25.0% |
| ! | TTTCAATTGTGTATGAACAA+TGG | - | chr4.1:10401971-10401990 | None:intergenic | 25.0% |
| !! | ATGTACATAAAAGTCACTTT+CGG | - | chr4.1:10402673-10402692 | None:intergenic | 25.0% |
| !! | CATCAGTGTATTAAAACTTT+TGG | - | chr4.1:10401997-10402016 | None:intergenic | 25.0% |
| !! | TATAATATAGGTGTGTTGAT+TGG | + | chr4.1:10401033-10401052 | MS.gene57307:intron | 25.0% |
| !! | TGAAACCATAATTTGAGATA+AGG | - | chr4.1:10400616-10400635 | None:intergenic | 25.0% |
| !! | TTCATGACAATTTTTATGGT+AGG | - | chr4.1:10401364-10401383 | None:intergenic | 25.0% |
| !!! | AACATGAATTCTTTGTTGTT+TGG | - | chr4.1:10400530-10400549 | None:intergenic | 25.0% |
| !!! | TGTTATTTCATCTATTCATG+TGG | + | chr4.1:10401325-10401344 | MS.gene57307:intron | 25.0% |
| !!! | TTTTAATATGTTGTTGGTGA+TGG | + | chr4.1:10401469-10401488 | MS.gene57307:intron | 25.0% |
| !!! | TTTTTCAAATCTGTGACATT+TGG | + | chr4.1:10401181-10401200 | MS.gene57307:intron | 25.0% |
| AGAGATAAAAAAGACAAACC+TGG | - | chr4.1:10402546-10402565 | None:intergenic | 30.0% | |
| AGCAAACTTAACAAACTTCT+TGG | + | chr4.1:10402492-10402511 | MS.gene57307:CDS | 30.0% | |
| ATAAACACATTGCAAATCCA+GGG | + | chr4.1:10400470-10400489 | MS.gene57307:intron | 30.0% | |
| ATCCATGGAAAATGAAAACA+AGG | + | chr4.1:10400024-10400043 | MS.gene57307:CDS | 30.0% | |
| ATGCTTAATAAGCTGTGAAA+GGG | - | chr4.1:10401918-10401937 | None:intergenic | 30.0% | |
| CAATATCTCTCTCAAGTATT+TGG | + | chr4.1:10400802-10400821 | MS.gene57307:CDS | 30.0% | |
| CTCAACAGATGATTAAATCA+AGG | + | chr4.1:10400720-10400739 | MS.gene57307:CDS | 30.0% | |
| CTTGATTTAATCATCTGTTG+AGG | - | chr4.1:10400722-10400741 | None:intergenic | 30.0% | |
| GTGTTCTCCTTAATGATATT+TGG | - | chr4.1:10401896-10401915 | None:intergenic | 30.0% | |
| TAGAAATTGACCATAACTTG+AGG | + | chr4.1:10402183-10402202 | MS.gene57307:intron | 30.0% | |
| TATGCTTAATAAGCTGTGAA+AGG | - | chr4.1:10401919-10401938 | None:intergenic | 30.0% | |
| TATGGTCAATTTCTATAGCT+TGG | - | chr4.1:10402178-10402197 | None:intergenic | 30.0% | |
| TCCATGGAAAATGAAAACAA+GGG | + | chr4.1:10400025-10400044 | MS.gene57307:CDS | 30.0% | |
| TTAGCCACCAAATATCATTA+AGG | + | chr4.1:10401886-10401905 | MS.gene57307:intron | 30.0% | |
| TTCTCCTTAATGATATTTGG+TGG | - | chr4.1:10401893-10401912 | None:intergenic | 30.0% | |
| ! | AATCTGTGACATTTGGATTT+TGG | + | chr4.1:10401188-10401207 | MS.gene57307:intron | 30.0% |
| ! | AGCGTGATATCTAAAACATT+CGG | - | chr4.1:10402406-10402425 | None:intergenic | 30.0% |
| ! | CATGTTCATATGTTTTCTTG+TGG | + | chr4.1:10400544-10400563 | MS.gene57307:CDS | 30.0% |
| ! | GCATTTTACTTTCTTCTGAA+GGG | + | chr4.1:10401577-10401596 | MS.gene57307:CDS | 30.0% |
| !! | AATTTGTTATTGGACCAACA+TGG | + | chr4.1:10401437-10401456 | MS.gene57307:intron | 30.0% |
| !!! | ACTTTGAGCTTTGTTTTTTG+TGG | + | chr4.1:10400764-10400783 | MS.gene57307:CDS | 30.0% |
| !!! | CTTTGAGCTTTGTTTTTTGT+GGG | + | chr4.1:10400765-10400784 | MS.gene57307:CDS | 30.0% |
| !!! | TTTAGCTACTTTTAAGAGAG+AGG | + | chr4.1:10400886-10400905 | MS.gene57307:CDS | 30.0% |
| AACAAAAATACGACTGCGAT+TGG | - | chr4.1:10402361-10402380 | None:intergenic | 35.0% | |
| AACAAAGCTGAGTTAGCAAT+AGG | - | chr4.1:10402796-10402815 | None:intergenic | 35.0% | |
| AAGCAAAAGCAATGTTAAGC+TGG | - | chr4.1:10402103-10402122 | None:intergenic | 35.0% | |
| AGCTTTCAAATCTGTTCTTC+AGG | + | chr4.1:10401554-10401573 | MS.gene57307:CDS | 35.0% | |
| ATCAAGGTCACAGTTCTTAA+AGG | + | chr4.1:10400736-10400755 | MS.gene57307:CDS | 35.0% | |
| CAAAATCACGATGATTCATG+TGG | + | chr4.1:10400186-10400205 | MS.gene57307:intron | 35.0% | |
| CTTTGGTACTCATCAAACAT+TGG | + | chr4.1:10400569-10400588 | MS.gene57307:CDS | 35.0% | |
| GAATCCAAAAAAATATGGGG+AGG | - | chr4.1:10402215-10402234 | None:intergenic | 35.0% | |
| GATAAACACATTGCAAATCC+AGG | + | chr4.1:10400469-10400488 | MS.gene57307:intron | 35.0% | |
| GATGATTCATGTGGTGATAT+TGG | + | chr4.1:10400195-10400214 | MS.gene57307:intron | 35.0% | |
| GCTTTCAAATCTGTTCTTCA+GGG | + | chr4.1:10401555-10401574 | MS.gene57307:CDS | 35.0% | |
| TGCATAATCCTCGTTACATA+TGG | + | chr4.1:10402250-10402269 | MS.gene57307:intron | 35.0% | |
| TTAGATATCACGCTATCACT+TGG | + | chr4.1:10402412-10402431 | MS.gene57307:CDS | 35.0% | |
| TTGCATACGGAGAAACAAAA+AGG | + | chr4.1:10402977-10402996 | MS.gene57307:CDS | 35.0% | |
| ! | CAATAAAAGTGACAGGGTTT+TGG | - | chr4.1:10402921-10402940 | None:intergenic | 35.0% |
| ! | GGCATTTTACTTTCTTCTGA+AGG | + | chr4.1:10401576-10401595 | MS.gene57307:CDS | 35.0% |
| ! | GTAATGGGAGTTATTGCATA+CGG | + | chr4.1:10402964-10402983 | MS.gene57307:CDS | 35.0% |
| ! | TATATTTCCAGATCTGGAGT+GGG | - | chr4.1:10401145-10401164 | None:intergenic | 35.0% |
| ! | TATGTTTTCTTGTGGCTCTT+TGG | + | chr4.1:10400552-10400571 | MS.gene57307:CDS | 35.0% |
| ! | TTCATTTTCCATGGATCCTT+TGG | - | chr4.1:10400020-10400039 | None:intergenic | 35.0% |
| !!! | CAAAACCCTGTCACTTTTAT+TGG | + | chr4.1:10402919-10402938 | MS.gene57307:CDS | 35.0% |
| !!! | GTGCTCATGATTTTTAGTTG+TGG | - | chr4.1:10402574-10402593 | None:intergenic | 35.0% |
| AAAACATACCCCACTTGCAA+TGG | - | chr4.1:10400957-10400976 | None:intergenic | 40.0% | |
| AATCCAAACAAGTGAAACCC+AGG | - | chr4.1:10401504-10401523 | None:intergenic | 40.0% | |
| AGATTTGAAAGCTCTTGCAG+CGG | - | chr4.1:10401547-10401566 | None:intergenic | 40.0% | |
| CAGGTATTAGGCAATGCAAA+AGG | + | chr4.1:10402862-10402881 | MS.gene57307:intron | 40.0% | |
| CATACGGAGAAACAAAAAGG+AGG | + | chr4.1:10402980-10402999 | MS.gene57307:CDS | 40.0% | |
| CCAAAAAAATATGGGGAGGA+AGG | - | chr4.1:10402211-10402230 | None:intergenic | 40.0% | |
| CCATGCCAATAAAAGTGACA+GGG | - | chr4.1:10402927-10402946 | None:intergenic | 40.0% | |
| CTATATTTCCAGATCTGGAG+TGG | - | chr4.1:10401146-10401165 | None:intergenic | 40.0% | |
| GCAAAAACAGCAGTGAAGAA+AGG | - | chr4.1:10400863-10400882 | None:intergenic | 40.0% | |
| GGAAAATGAAAACAAGGGCA+CGG | + | chr4.1:10400030-10400049 | MS.gene57307:CDS | 40.0% | |
| GGCTACTCAGTTACTGTAAT+GGG | + | chr4.1:10402949-10402968 | MS.gene57307:CDS | 40.0% | |
| GTTCTTTGCCATATGTAACG+AGG | - | chr4.1:10402261-10402280 | None:intergenic | 40.0% | |
| GTTTCTTTCAACCAAGCTGT+AGG | + | chr4.1:10400827-10400846 | MS.gene57307:CDS | 40.0% | |
| TAGCAGATAGCCAGATTGTT+TGG | + | chr4.1:10401262-10401281 | MS.gene57307:intron | 40.0% | |
| TCATCCATTTCAACCTACCA+GGG | + | chr4.1:10402297-10402316 | MS.gene57307:intron | 40.0% | |
| TCTTACAGCATGAGATCCAA+AGG | + | chr4.1:10400001-10400020 | MS.gene57307:CDS | 40.0% | |
| TGACACATTGTGAGGAAGAT+TGG | - | chr4.1:10400644-10400663 | None:intergenic | 40.0% | |
| TGGAATCAAATCAGGGAAGA+TGG | + | chr4.1:10400499-10400518 | MS.gene57307:CDS | 40.0% | |
| TGGCTACTCAGTTACTGTAA+TGG | + | chr4.1:10402948-10402967 | MS.gene57307:CDS | 40.0% | |
| TTCATCCATTTCAACCTACC+AGG | + | chr4.1:10402296-10402315 | MS.gene57307:intron | 40.0% | |
| ! | TAAGTTTGCTCCATATGCTG+CGG | - | chr4.1:10402482-10402501 | None:intergenic | 40.0% |
| !! | AATATGTTGTTGGTGATGGC+AGG | + | chr4.1:10401473-10401492 | MS.gene57307:intron | 40.0% |
| !! | ATATGTTGTTGGTGATGGCA+GGG | + | chr4.1:10401474-10401493 | MS.gene57307:intron | 40.0% |
| !! | CTACTTTTAAGAGAGAGGCT+TGG | + | chr4.1:10400891-10400910 | MS.gene57307:CDS | 40.0% |
| !! | GAGCTTGATTTGTCGTAACA+CGG | - | chr4.1:10400370-10400389 | None:intergenic | 40.0% |
| !!! | CCTTCCTCCCCATATTTTTT+TGG | + | chr4.1:10402208-10402227 | MS.gene57307:intron | 40.0% |
| !!! | CTTTGTTTTTTGTGGGTCTG+TGG | + | chr4.1:10400772-10400791 | MS.gene57307:CDS | 40.0% |
| !!! | GCCCTTGTTTTCATTTTCCA+TGG | - | chr4.1:10400029-10400048 | None:intergenic | 40.0% |
| AACACATTGCAAATCCAGGG+AGG | + | chr4.1:10400473-10400492 | MS.gene57307:intron | 45.0% | |
| AACAGCAGTGAAGAAAGGTG+TGG | - | chr4.1:10400858-10400877 | None:intergenic | 45.0% | |
| AGGGCACGGTTAAAGAAAGT+GGG | + | chr4.1:10400044-10400063 | MS.gene57307:CDS | 45.0% | |
| CATGAGATCCAAAGGATCCA+TGG | + | chr4.1:10400009-10400028 | MS.gene57307:CDS | 45.0% | |
| CATTGAGTTCAACTTCTCCC+TGG | - | chr4.1:10402317-10402336 | None:intergenic | 45.0% | |
| CTGCGATTGGAGACATATAC+AGG | - | chr4.1:10402348-10402367 | None:intergenic | 45.0% | |
| CTGTCATGTGACACATTGTG+AGG | - | chr4.1:10400652-10400671 | None:intergenic | 45.0% | |
| GAGGAGGTGGAATCAAATCA+GGG | + | chr4.1:10400492-10400511 | MS.gene57307:CDS | 45.0% | |
| GCCATGCCAATAAAAGTGAC+AGG | - | chr4.1:10402928-10402947 | None:intergenic | 45.0% | |
| TACAAGTGCTTTGACACTCC+AGG | + | chr4.1:10402525-10402544 | MS.gene57307:CDS | 45.0% | |
| TCGTAACACGGTGAGTTTGT+CGG | - | chr4.1:10400358-10400377 | None:intergenic | 45.0% | |
| TTTCTGGATCTGCACTCATC+TGG | + | chr4.1:10401219-10401238 | MS.gene57307:intron | 45.0% | |
| ! | AAGGGCACGGTTAAAGAAAG+TGG | + | chr4.1:10400043-10400062 | MS.gene57307:CDS | 45.0% |
| ! | CACTTTCGGTTTGCCATTGA+AGG | - | chr4.1:10402659-10402678 | None:intergenic | 45.0% |
| ! | GTTGCCTGCAGTAGTTTTCA+TGG | + | chr4.1:10402378-10402397 | MS.gene57307:CDS | 45.0% |
| ! | TTCTCCCTGGTAGGTTGAAA+TGG | - | chr4.1:10402304-10402323 | None:intergenic | 45.0% |
| !!! | AAGTGACAGGGTTTTGGAAC+AGG | - | chr4.1:10402915-10402934 | None:intergenic | 45.0% |
| !!! | CCCTGTCACTTTTATTGGCA+TGG | + | chr4.1:10402924-10402943 | MS.gene57307:CDS | 45.0% |
| !!! | GTCACTTTTATTGGCATGGC+TGG | + | chr4.1:10402928-10402947 | MS.gene57307:CDS | 45.0% |
| !!! | GTTTTTTGTGGGTCTGTGGT+TGG | + | chr4.1:10400776-10400795 | MS.gene57307:CDS | 45.0% |
| ACATTGCAAATCCAGGGAGG+AGG | + | chr4.1:10400476-10400495 | MS.gene57307:intron | 50.0% | |
| ATGGCAACACCAGCAACAAC+AGG | - | chr4.1:10400938-10400957 | None:intergenic | 50.0% | |
| ATTTGATTCCACCTCCTCCC+TGG | - | chr4.1:10400490-10400509 | None:intergenic | 50.0% | |
| CCATAATCCCACTCCAGATC+TGG | + | chr4.1:10401135-10401154 | MS.gene57307:intron | 50.0% | |
| CTTAACTCAGCCGCAGCATA+TGG | + | chr4.1:10402469-10402488 | MS.gene57307:CDS | 50.0% | |
| GAGCCTGGGTTTCACTTGTT+TGG | + | chr4.1:10401498-10401517 | MS.gene57307:CDS | 50.0% | |
| GAGTTCAACTTCTCCCTGGT+AGG | - | chr4.1:10402313-10402332 | None:intergenic | 50.0% | |
| GCTCTTGTTCCTGTTGTTGC+TGG | + | chr4.1:10400926-10400945 | MS.gene57307:CDS | 50.0% | |
| GGAGGAGGTGGAATCAAATC+AGG | + | chr4.1:10400491-10400510 | MS.gene57307:CDS | 50.0% | |
| GGCTCCATGAAAACTACTGC+AGG | - | chr4.1:10402385-10402404 | None:intergenic | 50.0% | |
| GGGCACGGTTAAAGAAAGTG+GGG | + | chr4.1:10400045-10400064 | MS.gene57307:CDS | 50.0% | |
| ! | CCAGATCTGGAGTGGGATTA+TGG | - | chr4.1:10401138-10401157 | None:intergenic | 50.0% |
| ! | TTTTGTGGGTCTGTGGTTGG+TGG | + | chr4.1:10400779-10400798 | MS.gene57307:CDS | 50.0% |
| !! | CTGGTGTTGCCATTGCAAGT+GGG | + | chr4.1:10400945-10400964 | MS.gene57307:CDS | 50.0% |
| !! | GAGGAAGGCACCTCAAGTTA+TGG | - | chr4.1:10402196-10402215 | None:intergenic | 50.0% |
| !! | TGGTGTTGCCATTGCAAGTG+GGG | + | chr4.1:10400946-10400965 | MS.gene57307:CDS | 50.0% |
| CTCTTGCAGCGGTTGCACTT+AGG | - | chr4.1:10401536-10401555 | None:intergenic | 55.0% | |
| GTGTGGTTGCACCTACAGCT+TGG | - | chr4.1:10400841-10400860 | None:intergenic | 55.0% | |
| TTGCAAATCCAGGGAGGAGG+TGG | + | chr4.1:10400479-10400498 | MS.gene57307:intron | 55.0% | |
| !! | GCTGGTGTTGCCATTGCAAG+TGG | + | chr4.1:10400944-10400963 | MS.gene57307:CDS | 55.0% |
| ! | GGTGATGGCAGGGTGAGCCT+GGG | + | chr4.1:10401484-10401503 | MS.gene57307:intron | 65.0% |
| !! | TGGTGATGGCAGGGTGAGCC+TGG | + | chr4.1:10401483-10401502 | MS.gene57307:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 10399986 | 10403011 | 10399986 | ID=MS.gene57307 |
| chr4.1 | mRNA | 10399986 | 10403011 | 10399986 | ID=MS.gene57307.t1;Parent=MS.gene57307 |
| chr4.1 | exon | 10399986 | 10400066 | 10399986 | ID=MS.gene57307.t1.exon1;Parent=MS.gene57307.t1 |
| chr4.1 | CDS | 10399986 | 10400066 | 10399986 | ID=cds.MS.gene57307.t1;Parent=MS.gene57307.t1 |
| chr4.1 | exon | 10400491 | 10400967 | 10400491 | ID=MS.gene57307.t1.exon2;Parent=MS.gene57307.t1 |
| chr4.1 | CDS | 10400491 | 10400967 | 10400491 | ID=cds.MS.gene57307.t1;Parent=MS.gene57307.t1 |
| chr4.1 | exon | 10401495 | 10401598 | 10401495 | ID=MS.gene57307.t1.exon3;Parent=MS.gene57307.t1 |
| chr4.1 | CDS | 10401495 | 10401598 | 10401495 | ID=cds.MS.gene57307.t1;Parent=MS.gene57307.t1 |
| chr4.1 | exon | 10402318 | 10402546 | 10402318 | ID=MS.gene57307.t1.exon4;Parent=MS.gene57307.t1 |
| chr4.1 | CDS | 10402318 | 10402546 | 10402318 | ID=cds.MS.gene57307.t1;Parent=MS.gene57307.t1 |
| chr4.1 | exon | 10402865 | 10403011 | 10402865 | ID=MS.gene57307.t1.exon5;Parent=MS.gene57307.t1 |
| chr4.1 | CDS | 10402865 | 10403011 | 10402865 | ID=cds.MS.gene57307.t1;Parent=MS.gene57307.t1 |
| Gene Sequence |
| Protein sequence |
