Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061794.t1 | XP_013446789.2 | 100 | 345 | 0 | 0 | 1 | 345 | 1 | 345 | 4.10E-183 | 650.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061794.t1 | Q9FYE5 | 79.0 | 309 | 65 | 0 | 37 | 345 | 1 | 309 | 2.6e-133 | 476.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061794.t1 | A0A2Z6MSA2 | 91.4 | 337 | 29 | 0 | 9 | 345 | 1 | 337 | 1.1e-166 | 595.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene061794 | 0.849767 | 2.62E-60 | -1.69E-46 |
| MS.gene050807 | MS.gene061794 | 0.815147 | 1.07E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene061794 | 0.804856 | 1.77E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene061794 | 0.800973 | 1.12E-48 | -1.69E-46 |
| MS.gene053581 | MS.gene061794 | 0.809734 | 1.63E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene061794 | 0.814197 | 1.74E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene061794 | 0.82714 | 1.84E-54 | -1.69E-46 |
| MS.gene059171 | MS.gene061794 | 0.810432 | 1.16E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011488 | MS.gene061794 | PPI |
| MS.gene061794 | MS.gene032018 | PPI |
| MS.gene69267 | MS.gene061794 | PPI |
| MS.gene28061 | MS.gene061794 | PPI |
| MS.gene061794 | MS.gene008096 | PPI |
| MS.gene030825 | MS.gene061794 | PPI |
| MS.gene57307 | MS.gene061794 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061794.t1 | MTR_8g090130 | 100.000 | 309 | 0 | 0 | 37 | 345 | 1 | 309 | 0.0 | 619 |
| MS.gene061794.t1 | MTR_5g081710 | 73.490 | 298 | 77 | 2 | 47 | 343 | 8 | 304 | 1.78e-160 | 451 |
| MS.gene061794.t1 | MTR_3g462070 | 70.805 | 298 | 87 | 0 | 46 | 343 | 8 | 305 | 2.55e-157 | 443 |
| MS.gene061794.t1 | MTR_3g070000 | 73.038 | 293 | 79 | 0 | 51 | 343 | 28 | 320 | 2.13e-155 | 439 |
| MS.gene061794.t1 | MTR_4g018760 | 68.966 | 290 | 90 | 0 | 55 | 344 | 20 | 309 | 1.61e-145 | 413 |
| MS.gene061794.t1 | MTR_4g101860 | 59.184 | 294 | 120 | 0 | 50 | 343 | 55 | 348 | 5.40e-118 | 345 |
| MS.gene061794.t1 | MTR_3g072380 | 32.646 | 291 | 188 | 3 | 55 | 342 | 22 | 307 | 2.28e-48 | 166 |
| MS.gene061794.t1 | MTR_1g030320 | 32.404 | 287 | 192 | 1 | 55 | 341 | 21 | 305 | 4.83e-48 | 165 |
| MS.gene061794.t1 | MTR_0011s0320 | 35.473 | 296 | 177 | 7 | 52 | 341 | 18 | 305 | 2.86e-35 | 132 |
| MS.gene061794.t1 | MTR_4g114360 | 34.007 | 297 | 180 | 9 | 52 | 341 | 18 | 305 | 2.85e-33 | 126 |
| MS.gene061794.t1 | MTR_3g107470 | 31.562 | 320 | 202 | 6 | 27 | 341 | 2 | 309 | 5.09e-33 | 125 |
| MS.gene061794.t1 | MTR_3g072380 | 34.463 | 177 | 114 | 1 | 55 | 231 | 22 | 196 | 1.26e-29 | 114 |
| MS.gene061794.t1 | MTR_0662s0010 | 34.457 | 267 | 159 | 9 | 52 | 311 | 18 | 275 | 3.08e-28 | 111 |
| MS.gene061794.t1 | MTR_7g110380 | 29.260 | 311 | 210 | 4 | 37 | 343 | 4 | 308 | 3.38e-27 | 110 |
| MS.gene061794.t1 | MTR_2g070400 | 25.796 | 314 | 218 | 6 | 37 | 343 | 1 | 306 | 1.12e-22 | 97.4 |
| MS.gene061794.t1 | MTR_4g123900 | 28.322 | 286 | 197 | 3 | 61 | 343 | 24 | 304 | 1.75e-22 | 97.4 |
| MS.gene061794.t1 | MTR_6g005480 | 27.217 | 327 | 224 | 5 | 21 | 342 | 91 | 408 | 5.25e-19 | 87.8 |
| MS.gene061794.t1 | MTR_4g123900 | 27.941 | 272 | 188 | 3 | 61 | 329 | 24 | 290 | 5.29e-19 | 86.3 |
| MS.gene061794.t1 | MTR_4g105630 | 26.578 | 301 | 201 | 9 | 51 | 342 | 88 | 377 | 2.16e-17 | 82.8 |
| MS.gene061794.t1 | MTR_8g016090 | 24.172 | 302 | 203 | 7 | 50 | 334 | 171 | 463 | 3.40e-16 | 79.7 |
| MS.gene061794.t1 | MTR_2g038410 | 29.966 | 297 | 177 | 11 | 50 | 337 | 63 | 337 | 1.09e-15 | 77.8 |
| MS.gene061794.t1 | MTR_4g105630 | 25.773 | 291 | 196 | 9 | 51 | 332 | 88 | 367 | 2.53e-14 | 73.6 |
| MS.gene061794.t1 | MTR_3g077640 | 24.242 | 330 | 225 | 7 | 22 | 342 | 89 | 402 | 3.35e-13 | 70.5 |
| MS.gene061794.t1 | MTR_5g044220 | 25.649 | 308 | 204 | 11 | 50 | 343 | 106 | 402 | 8.81e-13 | 69.3 |
| MS.gene061794.t1 | MTR_3g095130 | 23.693 | 287 | 211 | 4 | 58 | 343 | 24 | 303 | 1.90e-11 | 64.7 |
| MS.gene061794.t1 | MTR_4g088350 | 25.418 | 299 | 203 | 11 | 55 | 345 | 106 | 392 | 2.55e-11 | 64.7 |
| MS.gene061794.t1 | MTR_8g016090 | 24.691 | 243 | 154 | 6 | 112 | 334 | 180 | 413 | 2.69e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061794.t1 | AT5G04160 | 78.964 | 309 | 65 | 0 | 37 | 345 | 1 | 309 | 0.0 | 506 |
| MS.gene061794.t1 | AT3G10290 | 78.947 | 304 | 64 | 0 | 42 | 345 | 52 | 355 | 0.0 | 505 |
| MS.gene061794.t1 | AT3G11320 | 74.744 | 293 | 74 | 0 | 51 | 343 | 14 | 306 | 3.66e-158 | 445 |
| MS.gene061794.t1 | AT5G05820 | 73.038 | 293 | 79 | 0 | 51 | 343 | 14 | 306 | 2.66e-154 | 436 |
| MS.gene061794.t1 | AT1G12500 | 53.988 | 326 | 150 | 0 | 18 | 343 | 29 | 354 | 1.42e-121 | 354 |
| MS.gene061794.t1 | AT1G21870 | 33.564 | 289 | 188 | 3 | 55 | 342 | 22 | 307 | 6.64e-48 | 165 |
| MS.gene061794.t1 | AT1G77610 | 33.219 | 292 | 185 | 5 | 55 | 342 | 16 | 301 | 4.53e-47 | 162 |
| MS.gene061794.t1 | AT5G11230 | 34.228 | 298 | 182 | 7 | 52 | 343 | 22 | 311 | 1.75e-35 | 132 |
| MS.gene061794.t1 | AT5G25400 | 32.817 | 323 | 198 | 8 | 27 | 343 | 2 | 311 | 3.66e-34 | 129 |
| MS.gene061794.t1 | AT4G32390 | 33.127 | 323 | 197 | 8 | 27 | 343 | 2 | 311 | 5.29e-34 | 128 |
| MS.gene061794.t1 | AT2G25520 | 35.135 | 296 | 178 | 7 | 52 | 341 | 22 | 309 | 5.34e-32 | 123 |
| MS.gene061794.t1 | AT1G53660 | 29.066 | 289 | 190 | 6 | 61 | 343 | 30 | 309 | 1.41e-26 | 108 |
| MS.gene061794.t1 | AT1G53660 | 29.066 | 289 | 190 | 6 | 61 | 343 | 48 | 327 | 1.85e-26 | 108 |
| MS.gene061794.t1 | AT3G17430 | 29.268 | 287 | 193 | 5 | 61 | 343 | 25 | 305 | 1.35e-25 | 106 |
| MS.gene061794.t1 | AT3G17430 | 29.268 | 287 | 193 | 5 | 61 | 343 | 25 | 305 | 1.35e-25 | 106 |
| MS.gene061794.t1 | AT1G53660 | 28.832 | 274 | 182 | 5 | 74 | 343 | 11 | 275 | 4.56e-25 | 103 |
| MS.gene061794.t1 | AT3G14410 | 28.472 | 288 | 196 | 5 | 61 | 343 | 28 | 310 | 1.70e-23 | 99.8 |
| MS.gene061794.t1 | AT1G48230 | 29.617 | 287 | 192 | 5 | 61 | 343 | 25 | 305 | 4.47e-23 | 99.0 |
| MS.gene061794.t1 | AT1G53660 | 31.481 | 216 | 136 | 4 | 131 | 343 | 9 | 215 | 6.52e-22 | 93.2 |
| MS.gene061794.t1 | AT5G57100 | 30.169 | 295 | 177 | 9 | 60 | 343 | 76 | 352 | 8.63e-20 | 89.7 |
| MS.gene061794.t1 | AT3G01550 | 25.076 | 327 | 230 | 6 | 21 | 342 | 57 | 373 | 4.14e-18 | 85.1 |
| MS.gene061794.t1 | AT5G57100 | 31.633 | 196 | 121 | 6 | 60 | 250 | 76 | 263 | 1.56e-16 | 79.3 |
| MS.gene061794.t1 | AT1G48230 | 29.075 | 227 | 153 | 4 | 117 | 341 | 10 | 230 | 1.19e-15 | 76.6 |
| MS.gene061794.t1 | AT3G01550 | 24.465 | 327 | 227 | 7 | 21 | 342 | 57 | 368 | 6.91e-15 | 75.5 |
| MS.gene061794.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene061794.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene061794.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene061794.t1 | AT1G06470 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.82e-14 | 74.3 |
| MS.gene061794.t1 | AT5G55950 | 30.584 | 291 | 169 | 10 | 60 | 337 | 69 | 339 | 6.03e-14 | 72.8 |
| MS.gene061794.t1 | AT5G55950 | 30.584 | 291 | 169 | 10 | 60 | 337 | 9 | 279 | 9.76e-14 | 71.6 |
| MS.gene061794.t1 | AT5G46110 | 26.087 | 345 | 229 | 14 | 13 | 345 | 71 | 401 | 9.09e-13 | 69.3 |
| MS.gene061794.t1 | AT5G46110 | 26.087 | 345 | 229 | 14 | 13 | 345 | 71 | 401 | 9.66e-13 | 69.3 |
| MS.gene061794.t1 | AT5G55950 | 32.828 | 198 | 116 | 7 | 60 | 250 | 69 | 256 | 1.00e-12 | 68.6 |
| MS.gene061794.t1 | AT5G57100 | 36.879 | 141 | 78 | 5 | 60 | 195 | 76 | 210 | 1.70e-12 | 67.4 |
| MS.gene061794.t1 | AT5G46110 | 26.821 | 302 | 197 | 13 | 54 | 345 | 1 | 288 | 1.92e-12 | 67.4 |
| MS.gene061794.t1 | AT4G39390 | 26.190 | 294 | 195 | 8 | 58 | 343 | 25 | 304 | 9.34e-12 | 65.9 |
| MS.gene061794.t1 | AT4G39390 | 25.850 | 294 | 196 | 7 | 58 | 343 | 29 | 308 | 1.12e-11 | 65.5 |
| MS.gene061794.t1 | AT4G39390 | 25.850 | 294 | 196 | 7 | 58 | 343 | 29 | 308 | 1.12e-11 | 65.5 |
| MS.gene061794.t1 | AT4G09810 | 22.930 | 314 | 223 | 6 | 33 | 343 | 6 | 303 | 4.31e-11 | 63.9 |
Find 61 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAAGAACATAAATTTA+TGG | 0.161882 | 4.3:+10275452 | MS.gene061794:CDS |
| AAGTACCTTATCTCAAATTA+TGG | 0.221981 | 4.3:+10273626 | MS.gene061794:CDS |
| ATCAAGGTCACAGTTCTTAA+AGG | 0.247185 | 4.3:+10273754 | MS.gene061794:CDS |
| TGGTGATGGCAGGGTGAGCC+TGG | 0.262017 | 4.3:+10274503 | MS.gene061794:intron |
| CAATATCTCTCTCAAGTATT+TGG | 0.275503 | 4.3:+10273820 | MS.gene061794:CDS |
| AGCTTTCAAATCTGTTCTTC+AGG | 0.288805 | 4.3:+10274574 | MS.gene061794:CDS |
| GAGCCTGGGTTTCACTTGTT+TGG | 0.295030 | 4.3:+10274518 | MS.gene061794:CDS |
| AATTATGTTAATCAGGTATT+AGG | 0.309168 | 4.3:+10275870 | MS.gene061794:intron |
| CAATAAAAGTGACAGGGTTT+TGG | 0.309718 | 4.3:-10275938 | None:intergenic |
| GCTCTTGTTCCTGTTGTTGC+TGG | 0.312689 | 4.3:+10273944 | MS.gene061794:CDS |
| CTTAACTCAGCCGCAGCATA+TGG | 0.344628 | 4.3:+10275489 | MS.gene061794:CDS |
| GGAAAAGAACATAAATTTAT+GGG | 0.351125 | 4.3:+10275453 | MS.gene061794:CDS |
| AGCAAACTTAACAAACTTCT+TGG | 0.373328 | 4.3:+10275512 | MS.gene061794:CDS |
| GGCTACTCAGTTACTGTAAT+GGG | 0.394558 | 4.3:+10275969 | MS.gene061794:CDS |
| AACATGAATTCTTTGTTGTT+TGG | 0.399155 | 4.3:-10273545 | None:intergenic |
| GGAGGAGGTGGAATCAAATC+AGG | 0.422337 | 4.3:+10273509 | MS.gene061794:CDS |
| GCTTTCAAATCTGTTCTTCA+GGG | 0.437125 | 4.3:+10274575 | MS.gene061794:CDS |
| TTGCATACGGAGAAACAAAA+AGG | 0.447859 | 4.3:+10275997 | MS.gene061794:CDS |
| TGACACATTGTGAGGAAGAT+TGG | 0.449241 | 4.3:-10273659 | None:intergenic |
| TGAAACCATAATTTGAGATA+AGG | 0.466205 | 4.3:-10273631 | None:intergenic |
| GGTGATGGCAGGGTGAGCCT+GGG | 0.473562 | 4.3:+10274504 | MS.gene061794:intron |
| TAAGAACTATGTGAACTCAT+TGG | 0.491159 | 4.3:-10273001 | None:intergenic |
| GCCATGCCAATAAAAGTGAC+AGG | 0.492901 | 4.3:-10275945 | None:intergenic |
| ATGGCAACACCAGCAACAAC+AGG | 0.493877 | 4.3:-10273953 | None:intergenic |
| CTCTTGCAGCGGTTGCACTT+AGG | 0.496429 | 4.3:-10274553 | None:intergenic |
| TTGCAAATCCAGGGAGGAGG+TGG | 0.497230 | 4.3:+10273497 | MS.gene061794:intron |
| AGCGTGATATCTAAAACATT+CGG | 0.497597 | 4.3:-10275423 | None:intergenic |
| TGGCTACTCAGTTACTGTAA+TGG | 0.499480 | 4.3:+10275968 | MS.gene061794:CDS |
| CTGCAATTGGAGACATATAC+AGG | 0.502629 | 4.3:-10275365 | None:intergenic |
| TACAAGTGCTTTGACACTCC+AGG | 0.510037 | 4.3:+10275545 | MS.gene061794:CDS |
| TTAGATATCACGCTATCACT+TGG | 0.514237 | 4.3:+10275432 | MS.gene061794:CDS |
| GTTTCTTTCAACCAAGCTGT+AGG | 0.516484 | 4.3:+10273845 | MS.gene061794:CDS |
| CTCAACAGATGATTAAATCA+AGG | 0.523888 | 4.3:+10273738 | MS.gene061794:CDS |
| GGCTCCATGAAAACTACTGC+AGG | 0.527890 | 4.3:-10275402 | None:intergenic |
| TGGAATCAAATCAGGGAAGA+TGG | 0.528633 | 4.3:+10273517 | MS.gene061794:CDS |
| CAGGTATTAGGCAATGCAAA+AGG | 0.533740 | 4.3:+10275882 | MS.gene061794:intron |
| AAGGGCACGGTTAAAGAAAG+TGG | 0.535006 | 4.3:+10273061 | MS.gene061794:CDS |
| CATGAGATCCAAAGGATCCA+TGG | 0.542594 | 4.3:+10273027 | MS.gene061794:CDS |
| GCTGGTGTTGCCATTGCAAG+TGG | 0.549715 | 4.3:+10273962 | MS.gene061794:CDS |
| CTTGATTTAATCATCTGTTG+AGG | 0.555444 | 4.3:-10273737 | None:intergenic |
| AAAACATACCCCACTTGCAA+TGG | 0.557860 | 4.3:-10273972 | None:intergenic |
| CTGGTGTTGCCATTGCAAGT+GGG | 0.559180 | 4.3:+10273963 | MS.gene061794:CDS |
| CTTTGGTACTCATCAAACAT+TGG | 0.563810 | 4.3:+10273587 | MS.gene061794:CDS |
| ATCCATGGAAAATGAAAACA+AGG | 0.586176 | 4.3:+10273042 | MS.gene061794:CDS |
| TGGTGTTGCCATTGCAAGTG+GGG | 0.597605 | 4.3:+10273964 | MS.gene061794:CDS |
| GTAATGGGAGTTATTGCATA+CGG | 0.599804 | 4.3:+10275984 | MS.gene061794:CDS |
| AGGGCACGGTTAAAGAAAGT+GGG | 0.600109 | 4.3:+10273062 | MS.gene061794:CDS |
| TCTTACAGCATGAGATCCAA+AGG | 0.603872 | 4.3:+10273019 | MS.gene061794:CDS |
| ACATTGCAAATCCAGGGAGG+AGG | 0.617057 | 4.3:+10273494 | MS.gene061794:intron |
| AATCCAAACAAGTGAAACCC+AGG | 0.628421 | 4.3:-10274521 | None:intergenic |
| GGAAAATGAAAACAAGGGCA+CGG | 0.640574 | 4.3:+10273048 | MS.gene061794:CDS |
| CCATGCCAATAAAAGTGACA+GGG | 0.651043 | 4.3:-10275944 | None:intergenic |
| GTGTGGTTGCACCTACAGCT+TGG | 0.651188 | 4.3:-10273856 | None:intergenic |
| AACAATCTTAAAGAACACAA+TGG | 0.654847 | 4.3:-10273714 | None:intergenic |
| GAGGAGGTGGAATCAAATCA+GGG | 0.660705 | 4.3:+10273510 | MS.gene061794:CDS |
| TAAGTTTGCTCCATATGCTG+CGG | 0.688898 | 4.3:-10275499 | None:intergenic |
| AGATTTGAAAGCTCTTGCAG+CGG | 0.693952 | 4.3:-10274564 | None:intergenic |
| AACAGCAGTGAAGAAAGGTG+TGG | 0.696609 | 4.3:-10273873 | None:intergenic |
| GGGCACGGTTAAAGAAAGTG+GGG | 0.727668 | 4.3:+10273063 | MS.gene061794:CDS |
| CTGTCATGTGACACATTGTG+AGG | 0.735310 | 4.3:-10273667 | None:intergenic |
| TCCATGGAAAATGAAAACAA+GGG | 0.738782 | 4.3:+10273043 | MS.gene061794:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATTAAAATTATCATA+TGG | - | chr4.3:10274445-10274464 | None:intergenic | 10.0% |
| !! | ATTATAATTGCTTATAATAT+AGG | + | chr4.3:10274039-10274058 | MS.gene061794:intron | 10.0% |
| !!! | TGATAATTTTAATTTGTTAT+TGG | + | chr4.3:10274447-10274466 | MS.gene061794:intron | 10.0% |
| !! | ATTAAGAATCCAAAAAAATA+TGG | - | chr4.3:10275240-10275259 | None:intergenic | 15.0% |
| !! | TAAATAAGGGTAAAAAATAA+AGG | + | chr4.3:10273409-10273428 | MS.gene061794:intron | 15.0% |
| !! | TTAAGAATCCAAAAAAATAT+GGG | - | chr4.3:10275239-10275258 | None:intergenic | 15.0% |
| !! | TTTATAATCAATTAGCATTT+AGG | + | chr4.3:10274309-10274328 | MS.gene061794:intron | 15.0% |
| !!! | ACATTTTTTTAATATGTTGT+TGG | + | chr4.3:10274483-10274502 | MS.gene061794:intron | 15.0% |
| !!! | TAATTATATTTTTAGCTTTG+AGG | - | chr4.3:10275624-10275643 | None:intergenic | 15.0% |
| !!! | TCGTGATTTTATTAAAATTA+CGG | - | chr4.3:10273195-10273214 | None:intergenic | 15.0% |
| !! | AAACTTCAATAAAATCACAT+TGG | + | chr4.3:10273258-10273277 | MS.gene061794:intron | 20.0% |
| !! | AATTATGTTAATCAGGTATT+AGG | + | chr4.3:10275870-10275889 | MS.gene061794:intron | 20.0% |
| !! | ATTAAAATTATCATATGGTG+TGG | - | chr4.3:10274440-10274459 | None:intergenic | 20.0% |
| !! | ATTATTATTACAACCTTCAA+TGG | + | chr4.3:10275663-10275682 | MS.gene061794:intron | 20.0% |
| !! | CATAAAAATTGTCATGAATT+AGG | + | chr4.3:10274386-10274405 | MS.gene061794:intron | 20.0% |
| !! | CATTCTCACATATAAAAAAT+GGG | - | chr4.3:10274844-10274863 | None:intergenic | 20.0% |
| !! | CTATGATTTCTAAATCATAT+TGG | + | chr4.3:10274640-10274659 | MS.gene061794:intron | 20.0% |
| !! | GGAAAAGAACATAAATTTAT+GGG | + | chr4.3:10275453-10275472 | MS.gene061794:CDS | 20.0% |
| !! | TAAGAATCCAAAAAAATATG+GGG | - | chr4.3:10275238-10275257 | None:intergenic | 20.0% |
| !! | TATAAAAATACCAAACAATC+TGG | - | chr4.3:10274295-10274314 | None:intergenic | 20.0% |
| !! | TCATTCTCACATATAAAAAA+TGG | - | chr4.3:10274845-10274864 | None:intergenic | 20.0% |
| !! | TGGAAAAGAACATAAATTTA+TGG | + | chr4.3:10275452-10275471 | MS.gene061794:CDS | 20.0% |
| !! | TTGTTAAAAATTAATGTGAG+AGG | + | chr4.3:10273342-10273361 | MS.gene061794:intron | 20.0% |
| !!! | ACATTTGGATTTTAATTTTC+TGG | + | chr4.3:10274223-10274242 | MS.gene061794:intron | 20.0% |
| !!! | ATTTTATAGAACTGTTCTAA+AGG | + | chr4.3:10274719-10274738 | MS.gene061794:intron | 20.0% |
| !!! | CTAATTCATGACAATTTTTA+TGG | - | chr4.3:10274388-10274407 | None:intergenic | 20.0% |
| !!! | GAAATTATACATAGATGTTT+TGG | + | chr4.3:10274093-10274112 | MS.gene061794:intron | 20.0% |
| !!! | GTTTTTTTTGTTTGATTTGA+TGG | + | chr4.3:10273990-10274009 | MS.gene061794:intron | 20.0% |
| !!! | TGGTTTTGATTTTGAAATTA+TGG | + | chr4.3:10274113-10274132 | MS.gene061794:intron | 20.0% |
| !!! | TTTTGAAATTATGGATGTTT+TGG | + | chr4.3:10274122-10274141 | MS.gene061794:intron | 20.0% |
| ! | AAAGTAATTTCTTCAACACA+TGG | - | chr4.3:10273127-10273146 | None:intergenic | 25.0% |
| ! | AACAATCTTAAAGAACACAA+TGG | - | chr4.3:10273717-10273736 | None:intergenic | 25.0% |
| ! | AAGTAATTTCTTCAACACAT+GGG | - | chr4.3:10273126-10273145 | None:intergenic | 25.0% |
| ! | AAGTACCTTATCTCAAATTA+TGG | + | chr4.3:10273626-10273645 | MS.gene061794:CDS | 25.0% |
| ! | ACAAATCAAGCTCATAAATA+AGG | + | chr4.3:10273395-10273414 | MS.gene061794:intron | 25.0% |
| ! | ATTAACTATATTTCCAGATC+TGG | - | chr4.3:10274169-10274188 | None:intergenic | 25.0% |
| ! | CAAATCAAGCTCATAAATAA+GGG | + | chr4.3:10273396-10273415 | MS.gene061794:intron | 25.0% |
| ! | CATATAAAAAATGGGATTCA+AGG | - | chr4.3:10274836-10274855 | None:intergenic | 25.0% |
| ! | CTTTACTTTGCGATAAATAT+TGG | + | chr4.3:10275155-10275174 | MS.gene061794:intron | 25.0% |
| ! | TAAAAAAATGTACACCATGT+TGG | - | chr4.3:10274474-10274493 | None:intergenic | 25.0% |
| ! | TATTTAGTTATTGTGAACTG+TGG | + | chr4.3:10274670-10274689 | MS.gene061794:intron | 25.0% |
| ! | TATTTATCGCAAAGTAAAGA+AGG | - | chr4.3:10275154-10275173 | None:intergenic | 25.0% |
| ! | TCTGTCAAATTATGTTAATC+AGG | + | chr4.3:10275863-10275882 | MS.gene061794:intron | 25.0% |
| ! | TTCAATTGTGTATGAACAAT+GGG | - | chr4.3:10274990-10275009 | None:intergenic | 25.0% |
| ! | TTTATTATTCAGCTCTTTGT+TGG | + | chr4.3:10274747-10274766 | MS.gene061794:intron | 25.0% |
| ! | TTTCAATTGTGTATGAACAA+TGG | - | chr4.3:10274991-10275010 | None:intergenic | 25.0% |
| !! | ATGTACATAAAAGTCACTTT+CGG | - | chr4.3:10275693-10275712 | None:intergenic | 25.0% |
| !! | CATCAGTGTATTAAAACTTT+TGG | - | chr4.3:10275017-10275036 | None:intergenic | 25.0% |
| !! | TATAATATAGGTGTGTTGAT+TGG | + | chr4.3:10274051-10274070 | MS.gene061794:intron | 25.0% |
| !! | TGAAACCATAATTTGAGATA+AGG | - | chr4.3:10273634-10273653 | None:intergenic | 25.0% |
| !! | TTCATGACAATTTTTATGGT+AGG | - | chr4.3:10274384-10274403 | None:intergenic | 25.0% |
| !!! | AACATGAATTCTTTGTTGTT+TGG | - | chr4.3:10273548-10273567 | None:intergenic | 25.0% |
| !!! | TGTTATTTCATCTATTCATG+TGG | + | chr4.3:10274345-10274364 | MS.gene061794:intron | 25.0% |
| !!! | TTTTAATATGTTGTTGGTGA+TGG | + | chr4.3:10274489-10274508 | MS.gene061794:intron | 25.0% |
| AACAAAAATACGACTGCAAT+TGG | - | chr4.3:10275381-10275400 | None:intergenic | 30.0% | |
| AGAGATAAAAAAGACAAACC+TGG | - | chr4.3:10275566-10275585 | None:intergenic | 30.0% | |
| AGCAAACTTAACAAACTTCT+TGG | + | chr4.3:10275512-10275531 | MS.gene061794:CDS | 30.0% | |
| ATAAACACATTGCAAATCCA+GGG | + | chr4.3:10273488-10273507 | MS.gene061794:intron | 30.0% | |
| ATCCATGGAAAATGAAAACA+AGG | + | chr4.3:10273042-10273061 | MS.gene061794:CDS | 30.0% | |
| ATGCTTAATAAGCTGTGAAA+GGG | - | chr4.3:10274938-10274957 | None:intergenic | 30.0% | |
| CAATATCTCTCTCAAGTATT+TGG | + | chr4.3:10273820-10273839 | MS.gene061794:CDS | 30.0% | |
| CTCAACAGATGATTAAATCA+AGG | + | chr4.3:10273738-10273757 | MS.gene061794:CDS | 30.0% | |
| CTTGATTTAATCATCTGTTG+AGG | - | chr4.3:10273740-10273759 | None:intergenic | 30.0% | |
| GTGTTCTCCTTAATGATATT+TGG | - | chr4.3:10274916-10274935 | None:intergenic | 30.0% | |
| TAAAATCACGATGATTCATG+TGG | + | chr4.3:10273204-10273223 | MS.gene061794:intron | 30.0% | |
| TAGAAATTGACCATAACTTG+AGG | + | chr4.3:10275203-10275222 | MS.gene061794:intron | 30.0% | |
| TATGCTTAATAAGCTGTGAA+AGG | - | chr4.3:10274939-10274958 | None:intergenic | 30.0% | |
| TATGGTCAATTTCTATAGCT+TGG | - | chr4.3:10275198-10275217 | None:intergenic | 30.0% | |
| TCCATGGAAAATGAAAACAA+GGG | + | chr4.3:10273043-10273062 | MS.gene061794:CDS | 30.0% | |
| TTAGCCACCAAATATCATTA+AGG | + | chr4.3:10274906-10274925 | MS.gene061794:intron | 30.0% | |
| TTCTCCTTAATGATATTTGG+TGG | - | chr4.3:10274913-10274932 | None:intergenic | 30.0% | |
| ! | AGCGTGATATCTAAAACATT+CGG | - | chr4.3:10275426-10275445 | None:intergenic | 30.0% |
| ! | CATGTTCATATGTTTTCTTG+TGG | + | chr4.3:10273562-10273581 | MS.gene061794:CDS | 30.0% |
| ! | GCATTTTACTTTCTTCTGAA+GGG | + | chr4.3:10274597-10274616 | MS.gene061794:CDS | 30.0% |
| !! | AATTTGTTATTGGACCAACA+TGG | + | chr4.3:10274457-10274476 | MS.gene061794:intron | 30.0% |
| !!! | ACTTTGAGCTTTGTTTTTTG+TGG | + | chr4.3:10273782-10273801 | MS.gene061794:CDS | 30.0% |
| !!! | CTTTGAGCTTTGTTTTTTGT+GGG | + | chr4.3:10273783-10273802 | MS.gene061794:CDS | 30.0% |
| !!! | TTTAGCTACTTTTAAGAGAG+AGG | + | chr4.3:10273904-10273923 | MS.gene061794:CDS | 30.0% |
| AACAAAGCTGAGTTAGCAAT+AGG | - | chr4.3:10275816-10275835 | None:intergenic | 35.0% | |
| AACTGCAAATCTGTGACATT+TGG | + | chr4.3:10274208-10274227 | MS.gene061794:intron | 35.0% | |
| AAGCAAAAGCAATGTTAAGC+TGG | - | chr4.3:10275123-10275142 | None:intergenic | 35.0% | |
| AGCTTTCAAATCTGTTCTTC+AGG | + | chr4.3:10274574-10274593 | MS.gene061794:CDS | 35.0% | |
| ATCAAGGTCACAGTTCTTAA+AGG | + | chr4.3:10273754-10273773 | MS.gene061794:CDS | 35.0% | |
| CTTTGGTACTCATCAAACAT+TGG | + | chr4.3:10273587-10273606 | MS.gene061794:CDS | 35.0% | |
| GAATCCAAAAAAATATGGGG+AGG | - | chr4.3:10275235-10275254 | None:intergenic | 35.0% | |
| GATAAACACATTGCAAATCC+AGG | + | chr4.3:10273487-10273506 | MS.gene061794:intron | 35.0% | |
| GATGATTCATGTGGTGATAT+TGG | + | chr4.3:10273213-10273232 | MS.gene061794:intron | 35.0% | |
| GCTTTCAAATCTGTTCTTCA+GGG | + | chr4.3:10274575-10274594 | MS.gene061794:CDS | 35.0% | |
| TGCATAATCCTCGTTACATA+TGG | + | chr4.3:10275270-10275289 | MS.gene061794:intron | 35.0% | |
| TTAGATATCACGCTATCACT+TGG | + | chr4.3:10275432-10275451 | MS.gene061794:CDS | 35.0% | |
| TTGCATACGGAGAAACAAAA+AGG | + | chr4.3:10275997-10276016 | MS.gene061794:CDS | 35.0% | |
| ! | CAATAAAAGTGACAGGGTTT+TGG | - | chr4.3:10275941-10275960 | None:intergenic | 35.0% |
| ! | GGCATTTTACTTTCTTCTGA+AGG | + | chr4.3:10274596-10274615 | MS.gene061794:CDS | 35.0% |
| ! | GTAATGGGAGTTATTGCATA+CGG | + | chr4.3:10275984-10276003 | MS.gene061794:CDS | 35.0% |
| ! | TATATTTCCAGATCTGGAGT+GGG | - | chr4.3:10274163-10274182 | None:intergenic | 35.0% |
| ! | TATGTTTTCTTGTGGCTCTT+TGG | + | chr4.3:10273570-10273589 | MS.gene061794:CDS | 35.0% |
| ! | TTCATTTTCCATGGATCCTT+TGG | - | chr4.3:10273038-10273057 | None:intergenic | 35.0% |
| !!! | CAAAACCCTGTCACTTTTAT+TGG | + | chr4.3:10275939-10275958 | MS.gene061794:CDS | 35.0% |
| !!! | GTGCTCATGATTTTTAGTTG+TGG | - | chr4.3:10275594-10275613 | None:intergenic | 35.0% |
| AAAACATACCCCACTTGCAA+TGG | - | chr4.3:10273975-10273994 | None:intergenic | 40.0% | |
| AATCCAAACAAGTGAAACCC+AGG | - | chr4.3:10274524-10274543 | None:intergenic | 40.0% | |
| AGATTTGAAAGCTCTTGCAG+CGG | - | chr4.3:10274567-10274586 | None:intergenic | 40.0% | |
| CAGGTATTAGGCAATGCAAA+AGG | + | chr4.3:10275882-10275901 | MS.gene061794:intron | 40.0% | |
| CATACGGAGAAACAAAAAGG+AGG | + | chr4.3:10276000-10276019 | MS.gene061794:CDS | 40.0% | |
| CCAAAAAAATATGGGGAGGA+AGG | - | chr4.3:10275231-10275250 | None:intergenic | 40.0% | |
| CCATGCCAATAAAAGTGACA+GGG | - | chr4.3:10275947-10275966 | None:intergenic | 40.0% | |
| CTATATTTCCAGATCTGGAG+TGG | - | chr4.3:10274164-10274183 | None:intergenic | 40.0% | |
| CTGCAATTGGAGACATATAC+AGG | - | chr4.3:10275368-10275387 | None:intergenic | 40.0% | |
| GCAAAAACAGCAGTGAAGAA+AGG | - | chr4.3:10273881-10273900 | None:intergenic | 40.0% | |
| GGAAAATGAAAACAAGGGCA+CGG | + | chr4.3:10273048-10273067 | MS.gene061794:CDS | 40.0% | |
| GGCTACTCAGTTACTGTAAT+GGG | + | chr4.3:10275969-10275988 | MS.gene061794:CDS | 40.0% | |
| GTTCTTTGCCATATGTAACG+AGG | - | chr4.3:10275281-10275300 | None:intergenic | 40.0% | |
| GTTTCTTTCAACCAAGCTGT+AGG | + | chr4.3:10273845-10273864 | MS.gene061794:CDS | 40.0% | |
| TAGCAGATAGCCAGATTGTT+TGG | + | chr4.3:10274282-10274301 | MS.gene061794:intron | 40.0% | |
| TCATCCATTTCAACCTACCA+GGG | + | chr4.3:10275317-10275336 | MS.gene061794:intron | 40.0% | |
| TCTTACAGCATGAGATCCAA+AGG | + | chr4.3:10273019-10273038 | MS.gene061794:CDS | 40.0% | |
| TGACACATTGTGAGGAAGAT+TGG | - | chr4.3:10273662-10273681 | None:intergenic | 40.0% | |
| TGGAATCAAATCAGGGAAGA+TGG | + | chr4.3:10273517-10273536 | MS.gene061794:CDS | 40.0% | |
| TGGCTACTCAGTTACTGTAA+TGG | + | chr4.3:10275968-10275987 | MS.gene061794:CDS | 40.0% | |
| TTCATCCATTTCAACCTACC+AGG | + | chr4.3:10275316-10275335 | MS.gene061794:intron | 40.0% | |
| ! | TAAGTTTGCTCCATATGCTG+CGG | - | chr4.3:10275502-10275521 | None:intergenic | 40.0% |
| !! | AATATGTTGTTGGTGATGGC+AGG | + | chr4.3:10274493-10274512 | MS.gene061794:intron | 40.0% |
| !! | ATATGTTGTTGGTGATGGCA+GGG | + | chr4.3:10274494-10274513 | MS.gene061794:intron | 40.0% |
| !! | CTACTTTTAAGAGAGAGGCT+TGG | + | chr4.3:10273909-10273928 | MS.gene061794:CDS | 40.0% |
| !! | GAGCTTGATTTGTCGTAACA+CGG | - | chr4.3:10273388-10273407 | None:intergenic | 40.0% |
| !!! | CCTTCCTCCCCATATTTTTT+TGG | + | chr4.3:10275228-10275247 | MS.gene061794:intron | 40.0% |
| !!! | CTTTGTTTTTTGTGGGTCTG+TGG | + | chr4.3:10273790-10273809 | MS.gene061794:CDS | 40.0% |
| !!! | GCCCTTGTTTTCATTTTCCA+TGG | - | chr4.3:10273047-10273066 | None:intergenic | 40.0% |
| AACACATTGCAAATCCAGGG+AGG | + | chr4.3:10273491-10273510 | MS.gene061794:intron | 45.0% | |
| AACAGCAGTGAAGAAAGGTG+TGG | - | chr4.3:10273876-10273895 | None:intergenic | 45.0% | |
| AGGGCACGGTTAAAGAAAGT+GGG | + | chr4.3:10273062-10273081 | MS.gene061794:CDS | 45.0% | |
| CATGAGATCCAAAGGATCCA+TGG | + | chr4.3:10273027-10273046 | MS.gene061794:CDS | 45.0% | |
| CATTGAGTTCAACTTCTCCC+TGG | - | chr4.3:10275337-10275356 | None:intergenic | 45.0% | |
| CTGTCATGTGACACATTGTG+AGG | - | chr4.3:10273670-10273689 | None:intergenic | 45.0% | |
| GAGGAGGTGGAATCAAATCA+GGG | + | chr4.3:10273510-10273529 | MS.gene061794:CDS | 45.0% | |
| GCCATGCCAATAAAAGTGAC+AGG | - | chr4.3:10275948-10275967 | None:intergenic | 45.0% | |
| TACAAGTGCTTTGACACTCC+AGG | + | chr4.3:10275545-10275564 | MS.gene061794:CDS | 45.0% | |
| TCGTAACACGGTGAGTTTGT+CGG | - | chr4.3:10273376-10273395 | None:intergenic | 45.0% | |
| TTTCTGGATCTGCACTCATC+TGG | + | chr4.3:10274239-10274258 | MS.gene061794:intron | 45.0% | |
| ! | AAGGGCACGGTTAAAGAAAG+TGG | + | chr4.3:10273061-10273080 | MS.gene061794:CDS | 45.0% |
| ! | CACTTTCGGTTTGCCATTGA+AGG | - | chr4.3:10275679-10275698 | None:intergenic | 45.0% |
| ! | GTTGCCTGCAGTAGTTTTCA+TGG | + | chr4.3:10275398-10275417 | MS.gene061794:CDS | 45.0% |
| ! | TTCTCCCTGGTAGGTTGAAA+TGG | - | chr4.3:10275324-10275343 | None:intergenic | 45.0% |
| !!! | AAGTGACAGGGTTTTGGAAC+AGG | - | chr4.3:10275935-10275954 | None:intergenic | 45.0% |
| !!! | CCCTGTCACTTTTATTGGCA+TGG | + | chr4.3:10275944-10275963 | MS.gene061794:CDS | 45.0% |
| !!! | GTCACTTTTATTGGCATGGC+TGG | + | chr4.3:10275948-10275967 | MS.gene061794:CDS | 45.0% |
| !!! | GTTTTTTGTGGGTCTGTGGT+TGG | + | chr4.3:10273794-10273813 | MS.gene061794:CDS | 45.0% |
| ACATTGCAAATCCAGGGAGG+AGG | + | chr4.3:10273494-10273513 | MS.gene061794:intron | 50.0% | |
| ATGGCAACACCAGCAACAAC+AGG | - | chr4.3:10273956-10273975 | None:intergenic | 50.0% | |
| ATTTGATTCCACCTCCTCCC+TGG | - | chr4.3:10273508-10273527 | None:intergenic | 50.0% | |
| CCATAATCCCACTCCAGATC+TGG | + | chr4.3:10274153-10274172 | MS.gene061794:intron | 50.0% | |
| CTTAACTCAGCCGCAGCATA+TGG | + | chr4.3:10275489-10275508 | MS.gene061794:CDS | 50.0% | |
| GAGCCTGGGTTTCACTTGTT+TGG | + | chr4.3:10274518-10274537 | MS.gene061794:CDS | 50.0% | |
| GAGTTCAACTTCTCCCTGGT+AGG | - | chr4.3:10275333-10275352 | None:intergenic | 50.0% | |
| GCTCTTGTTCCTGTTGTTGC+TGG | + | chr4.3:10273944-10273963 | MS.gene061794:CDS | 50.0% | |
| GGAGGAGGTGGAATCAAATC+AGG | + | chr4.3:10273509-10273528 | MS.gene061794:CDS | 50.0% | |
| GGCTCCATGAAAACTACTGC+AGG | - | chr4.3:10275405-10275424 | None:intergenic | 50.0% | |
| GGGCACGGTTAAAGAAAGTG+GGG | + | chr4.3:10273063-10273082 | MS.gene061794:CDS | 50.0% | |
| ! | CCAGATCTGGAGTGGGATTA+TGG | - | chr4.3:10274156-10274175 | None:intergenic | 50.0% |
| ! | TTTTGTGGGTCTGTGGTTGG+TGG | + | chr4.3:10273797-10273816 | MS.gene061794:CDS | 50.0% |
| !! | CTGGTGTTGCCATTGCAAGT+GGG | + | chr4.3:10273963-10273982 | MS.gene061794:CDS | 50.0% |
| !! | GAGGAAGGCACCTCAAGTTA+TGG | - | chr4.3:10275216-10275235 | None:intergenic | 50.0% |
| !! | TGGTGTTGCCATTGCAAGTG+GGG | + | chr4.3:10273964-10273983 | MS.gene061794:CDS | 50.0% |
| CTCTTGCAGCGGTTGCACTT+AGG | - | chr4.3:10274556-10274575 | None:intergenic | 55.0% | |
| GTGTGGTTGCACCTACAGCT+TGG | - | chr4.3:10273859-10273878 | None:intergenic | 55.0% | |
| TTGCAAATCCAGGGAGGAGG+TGG | + | chr4.3:10273497-10273516 | MS.gene061794:intron | 55.0% | |
| !! | GCTGGTGTTGCCATTGCAAG+TGG | + | chr4.3:10273962-10273981 | MS.gene061794:CDS | 55.0% |
| ! | GGTGATGGCAGGGTGAGCCT+GGG | + | chr4.3:10274504-10274523 | MS.gene061794:intron | 65.0% |
| !! | TGGTGATGGCAGGGTGAGCC+TGG | + | chr4.3:10274503-10274522 | MS.gene061794:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 10273004 | 10276031 | 10273004 | ID=MS.gene061794 |
| chr4.3 | mRNA | 10273004 | 10276031 | 10273004 | ID=MS.gene061794.t1;Parent=MS.gene061794 |
| chr4.3 | exon | 10273004 | 10273084 | 10273004 | ID=MS.gene061794.t1.exon1;Parent=MS.gene061794.t1 |
| chr4.3 | CDS | 10273004 | 10273084 | 10273004 | ID=cds.MS.gene061794.t1;Parent=MS.gene061794.t1 |
| chr4.3 | exon | 10273509 | 10273985 | 10273509 | ID=MS.gene061794.t1.exon2;Parent=MS.gene061794.t1 |
| chr4.3 | CDS | 10273509 | 10273985 | 10273509 | ID=cds.MS.gene061794.t1;Parent=MS.gene061794.t1 |
| chr4.3 | exon | 10274515 | 10274618 | 10274515 | ID=MS.gene061794.t1.exon3;Parent=MS.gene061794.t1 |
| chr4.3 | CDS | 10274515 | 10274618 | 10274515 | ID=cds.MS.gene061794.t1;Parent=MS.gene061794.t1 |
| chr4.3 | exon | 10275338 | 10275566 | 10275338 | ID=MS.gene061794.t1.exon4;Parent=MS.gene061794.t1 |
| chr4.3 | CDS | 10275338 | 10275566 | 10275338 | ID=cds.MS.gene061794.t1;Parent=MS.gene061794.t1 |
| chr4.3 | exon | 10275885 | 10276031 | 10275885 | ID=MS.gene061794.t1.exon5;Parent=MS.gene061794.t1 |
| chr4.3 | CDS | 10275885 | 10276031 | 10275885 | ID=cds.MS.gene061794.t1;Parent=MS.gene061794.t1 |
| Gene Sequence |
| Protein sequence |
