AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031308

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031308.t1 MTR_2g081930 97.913 527 11 0 1 527 1 527 0.0 1053
MS.gene031308.t1 MTR_2g081950 87.500 392 49 0 136 527 18 409 0.0 703
MS.gene031308.t1 MTR_4g081490 72.751 389 95 1 137 525 66 443 0.0 571
MS.gene031308.t1 MTR_2g081960 85.507 138 19 1 1 138 1 137 1.28e-81 251
MS.gene031308.t1 MTR_8g447340 32.510 526 323 8 12 523 8 515 4.24e-79 257
MS.gene031308.t1 MTR_4g030040 31.128 514 328 7 17 523 7 501 6.60e-79 256
MS.gene031308.t1 MTR_4g030210 32.806 506 313 8 25 523 21 506 9.17e-79 256
MS.gene031308.t1 MTR_4g030040 31.214 519 332 7 10 523 4 502 9.60e-79 256
MS.gene031308.t1 MTR_8g039190 31.641 512 323 10 21 523 12 505 6.98e-76 249
MS.gene031308.t1 MTR_5g082760 30.286 525 330 9 19 523 10 518 1.32e-68 230
MS.gene031308.t1 MTR_5g080050 30.078 512 335 6 20 523 12 508 2.40e-68 229
MS.gene031308.t1 MTR_4g081480 62.069 145 46 4 1 137 1 144 1.06e-57 189
MS.gene031308.t1 MTR_8g039070 28.794 514 303 12 19 523 10 469 2.49e-56 196
MS.gene031308.t1 MTR_4g005090 25.869 518 299 18 43 523 25 494 1.94e-26 112
MS.gene031308.t1 MTR_4g069500 25.000 420 266 18 134 517 80 486 1.78e-13 73.2
MS.gene031308.t1 MTR_4g069500 25.000 420 266 18 134 517 30 436 2.86e-13 72.4
MS.gene031308.t1 MTR_7g113970 24.190 401 253 17 133 510 111 483 3.57e-13 72.4
MS.gene031308.t1 MTR_6g088450 23.009 452 293 17 96 510 65 498 4.46e-13 72.0
MS.gene031308.t1 MTR_4g120720 26.667 240 136 11 164 389 51 264 1.87e-12 68.2
MS.gene031308.t1 MTR_2g013310 25.161 465 284 19 92 517 56 495 3.77e-12 68.9
MS.gene031308.t1 MTR_2g013310 26.077 441 261 20 116 517 8 422 3.79e-12 68.9
MS.gene031308.t1 MTR_3g116240 22.474 485 320 17 76 517 15 486 1.10e-11 67.4
MS.gene031308.t1 MTR_4g072030 23.769 467 301 20 92 517 30 482 3.80e-11 65.9
MS.gene031308.t1 MTR_2g026160 24.275 276 182 10 141 403 86 347 5.67e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031308.t1 AT3G20660 68.217 516 148 3 10 523 10 511 0.0 717
MS.gene031308.t1 AT1G73220 36.275 510 295 5 20 519 33 522 1.30e-100 314
MS.gene031308.t1 AT1G79360 34.231 520 313 9 19 523 7 512 6.24e-91 288
MS.gene031308.t1 AT1G16390 32.580 531 314 9 11 523 3 507 1.47e-88 282
MS.gene031308.t1 AT1G79410 31.698 530 321 13 8 523 1 503 5.84e-71 236
MS.gene031308.t1 AT1G16370 28.652 534 338 11 8 523 1 509 3.28e-66 223
MS.gene031308.t1 AT3G13050 25.410 488 284 14 29 483 7 447 1.16e-21 98.6
MS.gene031308.t1 AT3G13050 25.410 488 284 14 29 483 7 447 1.16e-21 98.6
MS.gene031308.t1 AT3G13050 25.410 488 284 14 29 483 7 447 1.16e-21 98.6
MS.gene031308.t1 AT3G13050 25.410 488 284 14 29 483 7 447 1.16e-21 98.6
MS.gene031308.t1 AT1G20840 29.327 208 134 5 126 324 42 245 4.75e-14 75.5
MS.gene031308.t1 AT1G20840 29.327 208 134 5 126 324 42 245 4.75e-14 75.5
MS.gene031308.t1 AT2G16130 23.941 472 297 18 92 517 29 484 8.16e-14 74.3
MS.gene031308.t1 AT2G16120 23.617 470 301 18 92 517 29 484 2.88e-13 72.8
MS.gene031308.t1 AT3G05400 27.295 403 252 18 133 517 75 454 7.05e-12 68.2
MS.gene031308.t1 AT4G36670 21.888 466 313 16 92 517 20 474 3.00e-11 66.2
MS.gene031308.t1 AT3G05400 26.346 353 222 15 182 517 103 434 3.89e-11 65.9
MS.gene031308.t1 AT3G51490 31.304 230 131 12 102 314 17 236 7.27e-11 65.5
MS.gene031308.t1 AT3G51490 31.304 230 131 12 102 314 17 236 7.77e-11 65.5

Find 141 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCATTCTCCCCAAATTAT+TGG 0.154158 2.1:+18698210 MS.gene031308:CDS
ATTTCAGGAGCTGGAGTATT+TGG 0.180190 2.1:+18698107 MS.gene031308:intron
AGGACATAGATCCAATAATT+TGG 0.208242 2.1:-18698221 None:intergenic
GATTTGTGGTGATAAGTTTA+AGG 0.239703 2.1:+18694684 MS.gene031308:CDS
CACAAGTCTTGCTTGGGCTT+TGG 0.258308 2.1:+18694498 MS.gene031308:CDS
AATAACCTAATACGTGTAAC+TGG 0.261216 2.1:-18698713 None:intergenic
TTCTTTGCTGGGTGTATGAT+TGG 0.290968 2.1:+18694727 MS.gene031308:CDS
GGACATAGATCCAATAATTT+GGG 0.296130 2.1:-18698220 None:intergenic
GCTACCCAGTTACACGTATT+AGG 0.308068 2.1:+18698708 MS.gene031308:CDS
GCAGCCAAAGATGGTGTTTA+GGG 0.321201 2.1:-18698183 None:intergenic
TTAGCCTCGGTGGTGTATTA+TGG 0.322442 2.1:+18698758 MS.gene031308:CDS
CCTCTTTATGATACATTCAA+TGG 0.327419 2.1:+18699244 MS.gene031308:CDS
GAGAAATACTGTGGTGAGTT+TGG 0.337591 2.1:+18694448 MS.gene031308:CDS
TGTGCCCTAAACACCATCTT+TGG 0.339261 2.1:+18698179 MS.gene031308:CDS
GGAAGGAAACCATTGACAAT+AGG 0.348038 2.1:+18698893 MS.gene031308:CDS
TTAGGTAGTTGGATGCCTTT+TGG 0.348935 2.1:+18699154 MS.gene031308:CDS
CATTCTCACAAGTCTTGCTT+GGG 0.350525 2.1:+18694492 MS.gene031308:CDS
TCATTCTCACAAGTCTTGCT+TGG 0.368296 2.1:+18694491 MS.gene031308:CDS
AGCAGCCAAAGATGGTGTTT+AGG 0.382645 2.1:-18698184 None:intergenic
TGCGACACAAGCCGCGCAAA+TGG 0.384008 2.1:+18699102 MS.gene031308:CDS
TTATGATACATTCAATGGAT+TGG 0.388271 2.1:+18699249 MS.gene031308:CDS
CACGATAACCGCAGTGTTGT+TGG 0.389645 2.1:+18698862 MS.gene031308:CDS
CCTTCAACACACTTCCAATC+AGG 0.398321 2.1:-18694562 None:intergenic
GCGACACAAGCCGCGCAAAT+GGG 0.403807 2.1:+18699103 MS.gene031308:CDS
CCATCAAAACGCGGCATGGC+AGG 0.405884 2.1:+18698320 MS.gene031308:CDS
CACATTGTCCCTATTGTCAA+TGG 0.410231 2.1:-18698902 None:intergenic
CTCCTCACCGGTTTCAGCAC+TGG 0.414633 2.1:+18698251 MS.gene031308:CDS
AGATTCATCTCTAGGAAGAA+AGG 0.419211 2.1:+18698139 MS.gene031308:CDS
GAAGGAAACCATTGACAATA+GGG 0.420926 2.1:+18698894 MS.gene031308:CDS
GCAGTGTTGTTGGATAGATT+TGG 0.422354 2.1:+18698872 MS.gene031308:CDS
TGTAGAGTGTGCGCCATGTT+TGG 0.435538 2.1:-18698406 None:intergenic
ATAGGGACAATGTGGTTTAG+TGG 0.438435 2.1:+18698911 MS.gene031308:CDS
GTCCTCCTCCGCCTCCTCAC+CGG 0.446182 2.1:+18698239 MS.gene031308:CDS
TGCTGAAACCGGTGAGGAGG+CGG 0.447621 2.1:-18698247 None:intergenic
TTGGAGTGTTTGCGGTATGC+GGG 0.448332 2.1:+18699173 MS.gene031308:CDS
CGGCGTCGTCGTCGTGGCAG+TGG 0.450172 2.1:+18694620 MS.gene031308:CDS
GTGGTAAGGAACGCAGCGCT+TGG 0.451796 2.1:+18699076 MS.gene031308:CDS
AACCGGTGAGGAGGCGGAGG+AGG 0.451949 2.1:-18698241 None:intergenic
GAAGGACAAGGATTATGTAT+AGG 0.454079 2.1:-18698451 None:intergenic
GGTTTCAGCACTGGCGGTGT+TGG 0.461729 2.1:+18698260 MS.gene031308:CDS
TCTTGGAGACTCGGAGATGA+AGG 0.462095 2.1:-18698474 None:intergenic
GGTGTGGAAAGTAATTAAAT+TGG 0.463019 2.1:+18698973 MS.gene031308:CDS
TGTGGTGATAAGTTTAAGGT+TGG 0.464383 2.1:+18694688 MS.gene031308:CDS
TCTGAATGGAGTTTGATTTG+TGG 0.472369 2.1:+18694670 MS.gene031308:CDS
CTACCTAAAACGACCACAAA+AGG 0.476689 2.1:-18699139 None:intergenic
TATGTATAGGATGGAAGGGA+TGG 0.482070 2.1:-18698438 None:intergenic
AACACCGCCAGTGCTGAAAC+CGG 0.490126 2.1:-18698258 None:intergenic
GCCGCTCGAGAAGAAGTAGA+AGG 0.491146 2.1:-18698351 None:intergenic
GTCCTTGCCACCGAGCCGAT+TGG 0.491960 2.1:+18698296 MS.gene031308:CDS
CACCTTTCAGATTCATCTCT+AGG 0.492958 2.1:+18698131 MS.gene031308:CDS
CCTGATTGGAAGTGTGTTGA+AGG 0.493245 2.1:+18694562 MS.gene031308:CDS
TCATGTAGAGGTTAGTTTCG+AGG 0.495796 2.1:-18698802 None:intergenic
ACTGTGGTGAGTTTGGAAAA+TGG 0.497363 2.1:+18694455 MS.gene031308:CDS
TGATACATTCAATGGATTGG+AGG 0.497747 2.1:+18699252 MS.gene031308:CDS
GGCCAATCGGCTCGGTGGCA+AGG 0.499341 2.1:-18698298 None:intergenic
TGGTAAGGAACGCAGCGCTT+GGG 0.501571 2.1:+18699077 MS.gene031308:CDS
GACAAGGATTATGTATAGGA+TGG 0.502450 2.1:-18698447 None:intergenic
AGTGCAAGGACAACTCCGTC+TGG 0.504734 2.1:-18698575 None:intergenic
CGTTTATTCTTCCTCGAACA+AGG 0.508955 2.1:-18698502 None:intergenic
TTGCTGATAGGGAACCTGAT+TGG 0.509884 2.1:+18694548 MS.gene031308:CDS
GATTCATCTCTAGGAAGAAA+GGG 0.510137 2.1:+18698140 MS.gene031308:CDS
ATGCTTCTACGGTGTCTGAA+TGG 0.510229 2.1:+18694656 MS.gene031308:CDS
CACATCGGAGTTGTTTCCTA+CGG 0.511229 2.1:+18699054 MS.gene031308:CDS
TTTGATGATGGTGGTAAGAT+CGG 0.512146 2.1:-18694382 None:intergenic
TCCACAATTGCTTCTTACAA+TGG 0.514540 2.1:+18698542 MS.gene031308:CDS
TTTGGAGTGTTTGCGGTATG+CGG 0.515376 2.1:+18699172 MS.gene031308:CDS
AGTTGTTTCCTACGGTGGTA+AGG 0.516187 2.1:+18699062 MS.gene031308:CDS
TGCTGTTAAGCAGCCAAAGA+TGG 0.518000 2.1:-18698192 None:intergenic
AGCTCTTAACTTCTTAGCCT+CGG 0.519099 2.1:+18698745 MS.gene031308:CDS
CGGTGGAAGTGTCTGCGATA+CGG 0.520046 2.1:+18694600 MS.gene031308:CDS
AGGATTATGTATAGGATGGA+AGG 0.525162 2.1:-18698443 None:intergenic
CCAAGATGGTACCTTGTTCG+AGG 0.526256 2.1:+18698491 MS.gene031308:CDS
CATACCGCAAACACTCCAAA+AGG 0.527420 2.1:-18699169 None:intergenic
AGAGGCATATTCAGTGTCTC+CGG 0.527501 2.1:-18699226 None:intergenic
AGCGGCATAGCAATTCTCTC+TGG 0.530350 2.1:+18698368 MS.gene031308:CDS
ACATTCAATGGATTGGAGGC+TGG 0.531661 2.1:+18699256 MS.gene031308:CDS
TGAAACCGGTGAGGAGGCGG+AGG 0.534026 2.1:-18698244 None:intergenic
CGCCGGAAAAGATGCTTCTA+CGG 0.535705 2.1:+18694645 MS.gene031308:CDS
TGAGTTGAGATCATCGGAAA+GGG 0.537027 2.1:-18694359 None:intergenic
CCATTGAATGTATCATAAAG+AGG 0.538780 2.1:-18699244 None:intergenic
CGACACAAGCCGCGCAAATG+GGG 0.539219 2.1:+18699104 MS.gene031308:CDS
GTATAGGATGGAAGGGATGG+AGG 0.539534 2.1:-18698435 None:intergenic
TTATGGGTAATGTAGGGGTG+TGG 0.539802 2.1:+18698957 MS.gene031308:CDS
TTGGAAGTGTGTTGAAGGTA+TGG 0.540165 2.1:+18694567 MS.gene031308:CDS
TCGTCGTGGCAGTGGATCGC+CGG 0.542396 2.1:+18694628 MS.gene031308:CDS
TCCATTGTAAGAAGCAATTG+TGG 0.548608 2.1:-18698543 None:intergenic
CCTCGAACAAGGTACCATCT+TGG 0.549114 2.1:-18698491 None:intergenic
TTAGGGATATTCGGAATGGC+GGG 0.549232 2.1:+18699007 MS.gene031308:CDS
ACCTTCTACTTCTTCTCGAG+CGG 0.553087 2.1:+18698350 MS.gene031308:CDS
TTAGAAGCACATTCATGTAG+AGG 0.557548 2.1:-18698814 None:intergenic
TCGCCTACACCTTCCAAACA+TGG 0.558270 2.1:+18698393 MS.gene031308:CDS
GAAAACAAGGATGCACAAGT+TGG 0.558702 2.1:+18698665 MS.gene031308:CDS
ATACCTCTTCATCGAGTGCA+AGG 0.561508 2.1:-18698589 None:intergenic
GAAGGTATGGAGTGTTCCGC+CGG 0.566826 2.1:+18694580 MS.gene031308:CDS
GTAGCGAATCACATCAATGA+TGG 0.567809 2.1:-18698690 None:intergenic
ACTGCGGTTATCGTGAATGC+TGG 0.569724 2.1:-18698854 None:intergenic
GATCGGTGAGTTGAGATCAT+CGG 0.571951 2.1:-18694365 None:intergenic
TGTCCTTGCACTCGATGAAG+AGG 0.575131 2.1:+18698586 MS.gene031308:CDS
GGATTATGTATAGGATGGAA+GGG 0.576612 2.1:-18698442 None:intergenic
TGGCCCATCAAAACGCGGCA+TGG 0.580194 2.1:+18698316 MS.gene031308:CDS
CGGAGATGAAGGGAAGGACA+AGG 0.580732 2.1:-18698463 None:intergenic
CAGTGCTGAAACCGGTGAGG+AGG 0.593307 2.1:-18698250 None:intergenic
AAGGTACCATCTTGGAGACT+CGG 0.597332 2.1:-18698483 None:intergenic
TTTGTTGTTTATTTACACAT+CGG 0.598539 2.1:+18699039 MS.gene031308:CDS
TGTTGTTGGATAGATTTGGA+AGG 0.598953 2.1:+18698876 MS.gene031308:CDS
CTTGGAGACTCGGAGATGAA+GGG 0.599014 2.1:-18698473 None:intergenic
CAAGGACAACTCCGTCTGGA+AGG 0.601215 2.1:-18698571 None:intergenic
TGGCAAGGACGAAGGCGCAA+AGG 0.601626 2.1:-18698283 None:intergenic
AATTAGCTACGTGGAAAACA+AGG 0.604480 2.1:+18698652 MS.gene031308:CDS
TTTAGGGATATTCGGAATGG+CGG 0.605409 2.1:+18699006 MS.gene031308:CDS
GTGAGTTGAGATCATCGGAA+AGG 0.608122 2.1:-18694360 None:intergenic
GGTATGGAGTGTTCCGCCGG+TGG 0.609145 2.1:+18694583 MS.gene031308:CDS
CGGCTCGGTGGCAAGGACGA+AGG 0.610481 2.1:-18698291 None:intergenic
CTCACCGGTTTCAGCACTGG+CGG 0.612581 2.1:+18698254 MS.gene031308:CDS
TCATCTCCGAGTCTCCAAGA+TGG 0.613018 2.1:+18698477 MS.gene031308:CDS
GAGTGTGCGCCATGTTTGGA+AGG 0.613444 2.1:-18698402 None:intergenic
TTCCTAGAGATGAATCTGAA+AGG 0.614796 2.1:-18698133 None:intergenic
ATCGCAGACACTTCCACCGG+CGG 0.615850 2.1:-18694596 None:intergenic
GACACAAGCCGCGCAAATGG+GGG 0.617488 2.1:+18699105 MS.gene031308:CDS
GAGACTCGGAGATGAAGGGA+AGG 0.622437 2.1:-18698469 None:intergenic
CATGAATGTGCTTCTAAATG+CGG 0.626439 2.1:+18698820 MS.gene031308:CDS
GATGAGAATGTAGCCGACAT+CGG 0.634537 2.1:-18694337 None:intergenic
GCTCGAGAAGAAGTAGAAGG+TGG 0.635888 2.1:-18698348 None:intergenic
ATAACCTAATACGTGTAACT+GGG 0.636372 2.1:-18698712 None:intergenic
ATCGGAGTTGTTTCCTACGG+TGG 0.637558 2.1:+18699057 MS.gene031308:CDS
GCTGCGTTCCTTACCACCGT+AGG 0.638287 2.1:-18699070 None:intergenic
CATTGACAATAGGGACAATG+TGG 0.638705 2.1:+18698903 MS.gene031308:CDS
GCGATACGGCGTCGTCGTCG+TGG 0.642075 2.1:+18694614 MS.gene031308:CDS
GACATAGATCCAATAATTTG+GGG 0.648419 2.1:-18698219 None:intergenic
TGATGGGCCAATCGGCTCGG+TGG 0.648646 2.1:-18698303 None:intergenic
AATGGAAAACACCTTCCAGA+CGG 0.661052 2.1:+18698560 MS.gene031308:CDS
CGTATCGCAGACACTTCCAC+CGG 0.663522 2.1:-18694599 None:intergenic
CCGATTGGCCCATCAAAACG+CGG 0.666359 2.1:+18698311 MS.gene031308:CDS
CGCCAGTGCTGAAACCGGTG+AGG 0.675236 2.1:-18698253 None:intergenic
GCGCCATGTTTGGAAGGTGT+AGG 0.682350 2.1:-18698396 None:intergenic
TCTTAACTTCTTAGCCTCGG+TGG 0.693792 2.1:+18698748 MS.gene031308:CDS
AAAGTAATTAAATTGGTGTG+TGG 0.701059 2.1:+18698980 MS.gene031308:CDS
ATACAACCTAATTAGCTACG+TGG 0.724539 2.1:+18698643 MS.gene031308:CDS
AAATCTATCCAACAACACTG+CGG 0.770070 2.1:-18698870 None:intergenic
GAGATGCTTGAGAAATACTG+TGG 0.771565 2.1:+18694439 MS.gene031308:CDS
AAGACCATAATACACCACCG+AGG 0.840643 2.1:-18698762 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATTTATATAAGTAAAAA+AGG - chr2.1:18696115-18696134 None:intergenic 10.0%
!!! TAAGAAGTATATATAATTTA+AGG - chr2.1:18698000-18698019 None:intergenic 10.0%
!! AAAAGATAAAATGAATGAAA+TGG + chr2.1:18694843-18694862 MS.gene031308:intron 15.0%
!! ATTAATCACTATATTGTATA+TGG - chr2.1:18697148-18697167 None:intergenic 15.0%
!! CAAATATAGATTCAATAAAA+AGG - chr2.1:18695219-18695238 None:intergenic 15.0%
!! CAATTATTATAATTTATCGT+TGG + chr2.1:18695999-18696018 MS.gene031308:intron 15.0%
!! TATGAGTAATAAAGATATAT+TGG + chr2.1:18695588-18695607 MS.gene031308:intron 15.0%
!!! TGATTATTGTTGTATTTTAT+TGG + chr2.1:18694792-18694811 MS.gene031308:intron 15.0%
!!! TTCTTATTCAATTTCTTTTA+GGG + chr2.1:18695258-18695277 MS.gene031308:intron 15.0%
!!! TTGTTACAAGTTTTATATTT+TGG + chr2.1:18697339-18697358 MS.gene031308:intron 15.0%
!! AACTATTCATATTGACATAA+CGG + chr2.1:18697032-18697051 MS.gene031308:intron 20.0%
!! AATAAGGCTATAAAAATAAG+TGG + chr2.1:18695642-18695661 MS.gene031308:intron 20.0%
!! AGAAATATAGAAATACACAA+TGG - chr2.1:18696978-18696997 None:intergenic 20.0%
!! ATAATTTCATAACATTGTGA+TGG + chr2.1:18695545-18695564 MS.gene031308:intron 20.0%
!! ATTAGAGGTCATTTAAAAAT+TGG - chr2.1:18695811-18695830 None:intergenic 20.0%
!! CACTTTATAGTCTTTATTAT+CGG + chr2.1:18697597-18697616 MS.gene031308:intron 20.0%
!! CATAAAATAATTTACGTTTG+TGG - chr2.1:18695572-18695591 None:intergenic 20.0%
!! CTCATAATACTTAATGAATA+AGG + chr2.1:18695626-18695645 MS.gene031308:intron 20.0%
!! CTTATTCATTAAGTATTATG+AGG - chr2.1:18695628-18695647 None:intergenic 20.0%
!! TAAAACTTTAGTAAAGAAAG+AGG - chr2.1:18697216-18697235 None:intergenic 20.0%
!! TAAATGATTAAACTTTGCAA+GGG + chr2.1:18695756-18695775 MS.gene031308:intron 20.0%
!! TTAAATGATTAAACTTTGCA+AGG + chr2.1:18695755-18695774 MS.gene031308:intron 20.0%
!! TTGATGTAGGTATAAAAATA+AGG - chr2.1:18695859-18695878 None:intergenic 20.0%
!!! AAATGCAAAATTTTCATTAG+AGG + chr2.1:18695932-18695951 MS.gene031308:intron 20.0%
!!! ACCAATTTTGTAGAAAATAT+AGG + chr2.1:18697493-18697512 MS.gene031308:intron 20.0%
!!! ACCTATATTTTCTACAAAAT+TGG - chr2.1:18697497-18697516 None:intergenic 20.0%
!!! AGTATTCATAATTTTCTCTA+AGG + chr2.1:18696432-18696451 MS.gene031308:intron 20.0%
!!! ATATAGCTCTAAAGATATAT+TGG - chr2.1:18694901-18694920 None:intergenic 20.0%
!!! CAATATAGTGATTAATGTTT+TGG + chr2.1:18697152-18697171 MS.gene031308:intron 20.0%
!!! CTTCTTATTCAATTTCTTTT+AGG + chr2.1:18695257-18695276 MS.gene031308:intron 20.0%
!!! TAATGTTTTGGTTTTAGATT+GGG + chr2.1:18697164-18697183 MS.gene031308:intron 20.0%
!!! TAGAAAAGATTTTCTAGAAA+TGG - chr2.1:18696648-18696667 None:intergenic 20.0%
!!! TATTTTTATACCTACATCAA+AGG + chr2.1:18695859-18695878 MS.gene031308:intron 20.0%
!!! TCTAACACTTACTATTTTAT+TGG - chr2.1:18697761-18697780 None:intergenic 20.0%
!!! TTAATGTTTTGGTTTTAGAT+TGG + chr2.1:18697163-18697182 MS.gene031308:intron 20.0%
!!! TTTGTTGTTTATTTACACAT+CGG + chr2.1:18699039-18699058 MS.gene031308:CDS 20.0%
! AAAGTAATTAAATTGGTGTG+TGG + chr2.1:18698980-18698999 MS.gene031308:CDS 25.0%
! ACTATTCATATTGACATAAC+GGG + chr2.1:18697033-18697052 MS.gene031308:intron 25.0%
! AGTATAGTTAATAGAACAAC+TGG - chr2.1:18695292-18695311 None:intergenic 25.0%
! ATAAACTTATAGCCCATATA+AGG - chr2.1:18696261-18696280 None:intergenic 25.0%
! ATTATAATTTATCGTTGGTG+AGG + chr2.1:18696004-18696023 MS.gene031308:intron 25.0%
! CTATAAAGTGAAACATACAT+TGG - chr2.1:18697587-18697606 None:intergenic 25.0%
! GATCATTAGAGTATATAGTA+AGG - chr2.1:18697088-18697107 None:intergenic 25.0%
! TACTAATAAAACAGTTACGT+AGG + chr2.1:18696948-18696967 MS.gene031308:intron 25.0%
! TGACGTAAATTGATTGATAT+TGG - chr2.1:18697899-18697918 None:intergenic 25.0%
! TTATGATACATTCAATGGAT+TGG + chr2.1:18699249-18699268 MS.gene031308:CDS 25.0%
! TTCAAAATAGACAGATTGAT+TGG - chr2.1:18697455-18697474 None:intergenic 25.0%
! TTCAATAAAAAGGACTACTT+TGG - chr2.1:18695209-18695228 None:intergenic 25.0%
! TTCTTGATATTTCTCTTTGT+TGG - chr2.1:18697624-18697643 None:intergenic 25.0%
!! GACATCAAATTTTTGTGATA+AGG + chr2.1:18696683-18696702 MS.gene031308:intron 25.0%
!! GAGAATGTTGATCATTTTAT+TGG - chr2.1:18697797-18697816 None:intergenic 25.0%
!!! GATTTTTATGTTGTCATTTC+AGG + chr2.1:18698092-18698111 MS.gene031308:intron 25.0%
!!! GTGGGTTATATTAGTTTTTA+AGG + chr2.1:18697376-18697395 MS.gene031308:intron 25.0%
!!! TAGTTTTTAAGGTTGAACTT+TGG + chr2.1:18697387-18697406 MS.gene031308:intron 25.0%
!!! TATTTTGGATAGAAAAATGC+TGG + chr2.1:18697354-18697373 MS.gene031308:intron 25.0%
AATAACCTAATACGTGTAAC+TGG - chr2.1:18698716-18698735 None:intergenic 30.0%
ACACTAAAGAACTAACTAGA+AGG - chr2.1:18697417-18697436 None:intergenic 30.0%
AGGACATAGATCCAATAATT+TGG - chr2.1:18698224-18698243 None:intergenic 30.0%
ATAACCTAATACGTGTAACT+GGG - chr2.1:18698715-18698734 None:intergenic 30.0%
ATAAGACCAATCATCAAGTT+GGG + chr2.1:18694943-18694962 MS.gene031308:intron 30.0%
CCATTGAATGTATCATAAAG+AGG - chr2.1:18699247-18699266 None:intergenic 30.0%
CCTCTTTATGATACATTCAA+TGG + chr2.1:18699244-18699263 MS.gene031308:CDS 30.0%
CTATTCATATTGACATAACG+GGG + chr2.1:18697034-18697053 MS.gene031308:intron 30.0%
GACATAGATCCAATAATTTG+GGG - chr2.1:18698222-18698241 None:intergenic 30.0%
GATTTGTGGTGATAAGTTTA+AGG + chr2.1:18694684-18694703 MS.gene031308:CDS 30.0%
GGACATAGATCCAATAATTT+GGG - chr2.1:18698223-18698242 None:intergenic 30.0%
GGTGTGGAAAGTAATTAAAT+TGG + chr2.1:18698973-18698992 MS.gene031308:CDS 30.0%
GTAGAAAATATAGGTTGTAG+TGG + chr2.1:18697502-18697521 MS.gene031308:intron 30.0%
TAAGAAACCTGAAAGAGAAA+AGG + chr2.1:18696736-18696755 MS.gene031308:intron 30.0%
TATAAGACCAATCATCAAGT+TGG + chr2.1:18694942-18694961 MS.gene031308:intron 30.0%
TGAACTTGAGAATCATCTAT+TGG - chr2.1:18696045-18696064 None:intergenic 30.0%
TGTTAGGATTAACGATTACA+GGG + chr2.1:18695784-18695803 MS.gene031308:intron 30.0%
TTAAATGACCTCTAATTGCA+GGG + chr2.1:18695815-18695834 MS.gene031308:intron 30.0%
TTGTTAGGATTAACGATTAC+AGG + chr2.1:18695783-18695802 MS.gene031308:intron 30.0%
TTTAAATGACCTCTAATTGC+AGG + chr2.1:18695814-18695833 MS.gene031308:intron 30.0%
TTTGAAAAGTTAGCTGTGAA+TGG + chr2.1:18696382-18696401 MS.gene031308:intron 30.0%
! ATACTGACAATTGATAACTG+TGG - chr2.1:18695498-18695517 None:intergenic 30.0%
! GGTTATGATTTTTGCTGATA+GGG + chr2.1:18694537-18694556 MS.gene031308:CDS 30.0%
! TAATTAGTTTACCAGTTCCA+CGG + chr2.1:18696821-18696840 MS.gene031308:intron 30.0%
! TCGAGATTTTGTCCTTATAT+GGG + chr2.1:18696246-18696265 MS.gene031308:intron 30.0%
! TGGTTATGATTTTTGCTGAT+AGG + chr2.1:18694536-18694555 MS.gene031308:CDS 30.0%
! TTTGGAAGCTTTTCATACTA+TGG + chr2.1:18694516-18694535 MS.gene031308:CDS 30.0%
!! AATGGAGAGAAAGTATTATG+AGG + chr2.1:18694861-18694880 MS.gene031308:intron 30.0%
!!! GATTTTTTCAGTTTCATTGG+TGG - chr2.1:18694410-18694429 None:intergenic 30.0%
!!! GCAGATTTTTTCAGTTTCAT+TGG - chr2.1:18694413-18694432 None:intergenic 30.0%
AAATCTATCCAACAACACTG+CGG - chr2.1:18698873-18698892 None:intergenic 35.0%
AACGGGGATAAAATGTTACT+AGG + chr2.1:18697050-18697069 MS.gene031308:intron 35.0%
AATTAGCTACGTGGAAAACA+AGG + chr2.1:18698652-18698671 MS.gene031308:CDS 35.0%
ACGGGGATAAAATGTTACTA+GGG + chr2.1:18697051-18697070 MS.gene031308:intron 35.0%
ACTTTAGTAAAGAAAGAGGC+AGG - chr2.1:18697212-18697231 None:intergenic 35.0%
AGAGTGAAGGAATCTTTCTT+AGG + chr2.1:18697547-18697566 MS.gene031308:intron 35.0%
AGGATTATGTATAGGATGGA+AGG - chr2.1:18698446-18698465 None:intergenic 35.0%
AGTGAAGGAATCTTTCTTAG+GGG + chr2.1:18697549-18697568 MS.gene031308:intron 35.0%
ATACAACCTAATTAGCTACG+TGG + chr2.1:18698643-18698662 MS.gene031308:CDS 35.0%
ATCACCAAAATCAAAGTCAG+TGG - chr2.1:18695351-18695370 None:intergenic 35.0%
CATGAATGTGCTTCTAAATG+CGG + chr2.1:18698820-18698839 MS.gene031308:CDS 35.0%
CATGTAGTAGCAAATTGCTT+AGG - chr2.1:18697856-18697875 None:intergenic 35.0%
CCAAAATTTCCAAGAACTAG+TGG + chr2.1:18696859-18696878 MS.gene031308:intron 35.0%
GAAGGAAACCATTGACAATA+GGG + chr2.1:18698894-18698913 MS.gene031308:CDS 35.0%
GAAGGACAAGGATTATGTAT+AGG - chr2.1:18698454-18698473 None:intergenic 35.0%
GACAAGGATTATGTATAGGA+TGG - chr2.1:18698450-18698469 None:intergenic 35.0%
GACGACAAATAGAAAGTGAA+AGG - chr2.1:18696773-18696792 None:intergenic 35.0%
GAGTGAAGGAATCTTTCTTA+GGG + chr2.1:18697548-18697567 MS.gene031308:intron 35.0%
GGATTATGTATAGGATGGAA+GGG - chr2.1:18698445-18698464 None:intergenic 35.0%
GTATCAACCAACTATTTGCA+CGG + chr2.1:18695514-18695533 MS.gene031308:intron 35.0%
TCCACAATTGCTTCTTACAA+TGG + chr2.1:18698542-18698561 MS.gene031308:CDS 35.0%
TCCATTGTAAGAAGCAATTG+TGG - chr2.1:18698546-18698565 None:intergenic 35.0%
TGATGAATGTCCTTTGATGT+AGG - chr2.1:18695872-18695891 None:intergenic 35.0%
TGTTGTTGGATAGATTTGGA+AGG + chr2.1:18698876-18698895 MS.gene031308:CDS 35.0%
TTCACTTTCTATTTGTCGTC+TGG + chr2.1:18696773-18696792 MS.gene031308:intron 35.0%
TTCCTAGAGATGAATCTGAA+AGG - chr2.1:18698136-18698155 None:intergenic 35.0%
TTGGATAGAAAAATGCTGGT+GGG + chr2.1:18697358-18697377 MS.gene031308:intron 35.0%
TTTGGATAGAAAAATGCTGG+TGG + chr2.1:18697357-18697376 MS.gene031308:intron 35.0%
! AAATTGGTGTGTGGTGTTTT+AGG + chr2.1:18698989-18699008 MS.gene031308:CDS 35.0%
! AATTAGTTTACCAGTTCCAC+GGG + chr2.1:18696822-18696841 MS.gene031308:intron 35.0%
! AATTGGTGTGTGGTGTTTTA+GGG + chr2.1:18698990-18699009 MS.gene031308:CDS 35.0%
! AGATTCATCTCTAGGAAGAA+AGG + chr2.1:18698139-18698158 MS.gene031308:CDS 35.0%
! CAATGTCGTTTGTTGAAGAA+CGG + chr2.1:18696173-18696192 MS.gene031308:intron 35.0%
! CTCGAGATTTTGTCCTTATA+TGG + chr2.1:18696245-18696264 MS.gene031308:intron 35.0%
! GATTCATCTCTAGGAAGAAA+GGG + chr2.1:18698140-18698159 MS.gene031308:CDS 35.0%
! TGTGGTGATAAGTTTAAGGT+TGG + chr2.1:18694688-18694707 MS.gene031308:CDS 35.0%
! TGTTTTCCACGTAGCTAATT+AGG - chr2.1:18698652-18698671 None:intergenic 35.0%
! TTAGAAGCACATTCATGTAG+AGG - chr2.1:18698817-18698836 None:intergenic 35.0%
! TTCAAGCTCTTTTCTTTGCT+GGG + chr2.1:18694716-18694735 MS.gene031308:CDS 35.0%
!! AGTGGATTCTTTTGTTTGCT+GGG + chr2.1:18698929-18698948 MS.gene031308:CDS 35.0%
!! CCACTAGTTCTTGGAAATTT+TGG - chr2.1:18696862-18696881 None:intergenic 35.0%
!! GAGTTTTATGGGTAATGTAG+GGG + chr2.1:18698952-18698971 MS.gene031308:CDS 35.0%
!! GGAGTTTTATGGGTAATGTA+GGG + chr2.1:18698951-18698970 MS.gene031308:CDS 35.0%
!! TCATTGGTGGTTTTTGATGA+TGG - chr2.1:18694397-18694416 None:intergenic 35.0%
!! TCTGAATGGAGTTTGATTTG+TGG + chr2.1:18694670-18694689 MS.gene031308:CDS 35.0%
!! TGATACATTCAATGGATTGG+AGG + chr2.1:18699252-18699271 MS.gene031308:CDS 35.0%
!! TTGATGATTGGTCTTATAGC+AGG - chr2.1:18694940-18694959 None:intergenic 35.0%
!! TTTGATGATGGTGGTAAGAT+CGG - chr2.1:18694385-18694404 None:intergenic 35.0%
!!! GATTCCACTGACTTTGATTT+TGG + chr2.1:18695344-18695363 MS.gene031308:intron 35.0%
!!! TAGTGGATTCTTTTGTTTGC+TGG + chr2.1:18698928-18698947 MS.gene031308:CDS 35.0%
!!! TGTGGTGTTTTAGGGATATT+CGG + chr2.1:18698998-18699017 MS.gene031308:CDS 35.0%
!!! TGTTTTAGGGATATTCGGAA+TGG + chr2.1:18699003-18699022 MS.gene031308:CDS 35.0%
!!! TTTTCTAGAAATGGACTGTG+TGG - chr2.1:18696639-18696658 None:intergenic 35.0%
AATGGAAAACACCTTCCAGA+CGG + chr2.1:18698560-18698579 MS.gene031308:CDS 40.0%
ACTGTGGTGAGTTTGGAAAA+TGG + chr2.1:18694455-18694474 MS.gene031308:CDS 40.0%
AGCTCTTAACTTCTTAGCCT+CGG + chr2.1:18698745-18698764 MS.gene031308:CDS 40.0%
AGGAATCTTTCTTAGGGGAA+TGG + chr2.1:18697554-18697573 MS.gene031308:intron 40.0%
AGGTTGTAGTGGTATCTTGA+GGG + chr2.1:18697513-18697532 MS.gene031308:intron 40.0%
AGTTCACGTAGACGATCTTA+AGG + chr2.1:18696059-18696078 MS.gene031308:intron 40.0%
ATAAGGAACGTGCAACTTGA+GGG + chr2.1:18696700-18696719 MS.gene031308:intron 40.0%
ATAGGGACAATGTGGTTTAG+TGG + chr2.1:18698911-18698930 MS.gene031308:CDS 40.0%
CACATTGTCCCTATTGTCAA+TGG - chr2.1:18698905-18698924 None:intergenic 40.0%
CACCTTTCAGATTCATCTCT+AGG + chr2.1:18698131-18698150 MS.gene031308:CDS 40.0%
CAGCATTCTCCCCAAATTAT+TGG + chr2.1:18698210-18698229 MS.gene031308:CDS 40.0%
CATTCTCACAAGTCTTGCTT+GGG + chr2.1:18694492-18694511 MS.gene031308:CDS 40.0%
CATTGACAATAGGGACAATG+TGG + chr2.1:18698903-18698922 MS.gene031308:CDS 40.0%
CGGGGATAAAATGTTACTAG+GGG + chr2.1:18697052-18697071 MS.gene031308:intron 40.0%
CGTTCTTCAACAAACGACAT+TGG - chr2.1:18696175-18696194 None:intergenic 40.0%
CGTTTATTCTTCCTCGAACA+AGG - chr2.1:18698505-18698524 None:intergenic 40.0%
CTACCTAAAACGACCACAAA+AGG - chr2.1:18699142-18699161 None:intergenic 40.0%
GAAAACAAGGATGCACAAGT+TGG + chr2.1:18698665-18698684 MS.gene031308:CDS 40.0%
GAGAAATACTGTGGTGAGTT+TGG + chr2.1:18694448-18694467 MS.gene031308:CDS 40.0%
GAGATGCTTGAGAAATACTG+TGG + chr2.1:18694439-18694458 MS.gene031308:CDS 40.0%
GGAAGGAAACCATTGACAAT+AGG + chr2.1:18698893-18698912 MS.gene031308:CDS 40.0%
GGGATATTATGTGAGAGTGA+AGG + chr2.1:18697534-18697553 MS.gene031308:intron 40.0%
GGGGATAAAATGTTACTAGG+GGG + chr2.1:18697053-18697072 MS.gene031308:intron 40.0%
GTAGCGAATCACATCAATGA+TGG - chr2.1:18698693-18698712 None:intergenic 40.0%
TAGGTTGTAGTGGTATCTTG+AGG + chr2.1:18697512-18697531 MS.gene031308:intron 40.0%
TAGTCGACACACAAGTTTCA+TGG - chr2.1:18697013-18697032 None:intergenic 40.0%
TATGTATAGGATGGAAGGGA+TGG - chr2.1:18698441-18698460 None:intergenic 40.0%
TCATTCTCACAAGTCTTGCT+TGG + chr2.1:18694491-18694510 MS.gene031308:CDS 40.0%
TTCTTTGCTGGGTGTATGAT+TGG + chr2.1:18694727-18694746 MS.gene031308:CDS 40.0%
TTTAGGGATATTCGGAATGG+CGG + chr2.1:18699006-18699025 MS.gene031308:CDS 40.0%
! AGAAAGTGAAAGGTATGCTG+TGG - chr2.1:18696763-18696782 None:intergenic 40.0%
! AGTTGTTGTCCACTAGTTCT+TGG - chr2.1:18696871-18696890 None:intergenic 40.0%
! ATTAGTTTACCAGTTCCACG+GGG + chr2.1:18696823-18696842 MS.gene031308:intron 40.0%
! ATTTCAGGAGCTGGAGTATT+TGG + chr2.1:18698107-18698126 MS.gene031308:intron 40.0%
! GATGTTTGCGTTTTATCTGC+CGG + chr2.1:18699207-18699226 MS.gene031308:CDS 40.0%
! GCAGTGTTGTTGGATAGATT+TGG + chr2.1:18698872-18698891 MS.gene031308:CDS 40.0%
! GTTCAAGCTCTTTTCTTTGC+TGG + chr2.1:18694715-18694734 MS.gene031308:CDS 40.0%
! TATGTTGTCATTTCAGGAGC+TGG + chr2.1:18698098-18698117 MS.gene031308:intron 40.0%
! TGAGTTGAGATCATCGGAAA+GGG - chr2.1:18694362-18694381 None:intergenic 40.0%
! TTAGGTAGTTGGATGCCTTT+TGG + chr2.1:18699154-18699173 MS.gene031308:CDS 40.0%
! TTGGAAGTGTGTTGAAGGTA+TGG + chr2.1:18694567-18694586 MS.gene031308:CDS 40.0%
!! CTAGTGGACAACAACTTTTG+AGG + chr2.1:18696875-18696894 MS.gene031308:intron 40.0%
!! CTTTGCAAGGGTGATTTGTT+AGG + chr2.1:18695768-18695787 MS.gene031308:intron 40.0%
!! GGGAGTTTTATGGGTAATGT+AGG + chr2.1:18698950-18698969 MS.gene031308:CDS 40.0%
!! GTGGATTCTTTTGTTTGCTG+GGG + chr2.1:18698930-18698949 MS.gene031308:CDS 40.0%
!! TCATGTAGAGGTTAGTTTCG+AGG - chr2.1:18698805-18698824 None:intergenic 40.0%
!! TGTTTGCTGGGGAGTTTTAT+GGG + chr2.1:18698941-18698960 MS.gene031308:CDS 40.0%
!! TTGTGGTCGTTTTAGGTAGT+TGG + chr2.1:18699143-18699162 MS.gene031308:CDS 40.0%
!! TTGTTTGCTGGGGAGTTTTA+TGG + chr2.1:18698940-18698959 MS.gene031308:CDS 40.0%
!!! TTGGTGGTTTTTGATGATGG+TGG - chr2.1:18694394-18694413 None:intergenic 40.0%
AAATTAGAACCCCGTGGAAC+TGG - chr2.1:18696835-18696854 None:intergenic 45.0%
AAGACCATAATACACCACCG+AGG - chr2.1:18698765-18698784 None:intergenic 45.0%
AATGCAGCCACGTTTGTGAT+GGG - chr2.1:18695713-18695732 None:intergenic 45.0%
ACAAACGTGGCTGCATTAAG+TGG + chr2.1:18695716-18695735 MS.gene031308:intron 45.0%
ACCTTCTACTTCTTCTCGAG+CGG + chr2.1:18698350-18698369 MS.gene031308:CDS 45.0%
AGCAGCCAAAGATGGTGTTT+AGG - chr2.1:18698187-18698206 None:intergenic 45.0%
AGTCTCTCCGTGCAAATAGT+TGG - chr2.1:18695524-18695543 None:intergenic 45.0%
ATACCTCTTCATCGAGTGCA+AGG - chr2.1:18698592-18698611 None:intergenic 45.0%
ATGCTTCTACGGTGTCTGAA+TGG + chr2.1:18694656-18694675 MS.gene031308:CDS 45.0%
CAAACGTGGCTGCATTAAGT+GGG + chr2.1:18695717-18695736 MS.gene031308:intron 45.0%
CATACCGCAAACACTCCAAA+AGG - chr2.1:18699172-18699191 None:intergenic 45.0%
CCTTCAACACACTTCCAATC+AGG - chr2.1:18694565-18694584 None:intergenic 45.0%
GATAAGGAACGTGCAACTTG+AGG + chr2.1:18696699-18696718 MS.gene031308:intron 45.0%
GCAGCCAAAGATGGTGTTTA+GGG - chr2.1:18698186-18698205 None:intergenic 45.0%
GCTACCCAGTTACACGTATT+AGG + chr2.1:18698708-18698727 MS.gene031308:CDS 45.0%
GGTTGTAGTGGTATCTTGAG+GGG + chr2.1:18697514-18697533 MS.gene031308:intron 45.0%
TAATGCAGCCACGTTTGTGA+TGG - chr2.1:18695714-18695733 None:intergenic 45.0%
TCTTAACTTCTTAGCCTCGG+TGG + chr2.1:18698748-18698767 MS.gene031308:CDS 45.0%
TGATAGTCCCATCACAAACG+TGG + chr2.1:18695703-18695722 MS.gene031308:intron 45.0%
TGCTGTTAAGCAGCCAAAGA+TGG - chr2.1:18698195-18698214 None:intergenic 45.0%
TGTGCCCTAAACACCATCTT+TGG + chr2.1:18698179-18698198 MS.gene031308:CDS 45.0%
TGTTTCGTCCCTGCAATTAG+AGG - chr2.1:18695826-18695845 None:intergenic 45.0%
TTAGCCTCGGTGGTGTATTA+TGG + chr2.1:18698758-18698777 MS.gene031308:CDS 45.0%
TTAGGGATATTCGGAATGGC+GGG + chr2.1:18699007-18699026 MS.gene031308:CDS 45.0%
TTATGGGTAATGTAGGGGTG+TGG + chr2.1:18698957-18698976 MS.gene031308:CDS 45.0%
TTGCTGATAGGGAACCTGAT+TGG + chr2.1:18694548-18694567 MS.gene031308:CDS 45.0%
! AAGGTACCATCTTGGAGACT+CGG - chr2.1:18698486-18698505 None:intergenic 45.0%
! AGAGGCATATTCAGTGTCTC+CGG - chr2.1:18699229-18699248 None:intergenic 45.0%
! AGTTCCACGGGGTTCTAATT+TGG + chr2.1:18696834-18696853 MS.gene031308:intron 45.0%
! AGTTGTTTCCTACGGTGGTA+AGG + chr2.1:18699062-18699081 MS.gene031308:CDS 45.0%
! CACATCGGAGTTGTTTCCTA+CGG + chr2.1:18699054-18699073 MS.gene031308:CDS 45.0%
! CCTGATTGGAAGTGTGTTGA+AGG + chr2.1:18694562-18694581 MS.gene031308:CDS 45.0%
! CTGTGGTCCTTTTCTCTTTC+AGG - chr2.1:18696746-18696765 None:intergenic 45.0%
! GATCGGTGAGTTGAGATCAT+CGG - chr2.1:18694368-18694387 None:intergenic 45.0%
! GTGAGTTGAGATCATCGGAA+AGG - chr2.1:18694363-18694382 None:intergenic 45.0%
! TTGATTGGTGTGCTGATCGA+AGG - chr2.1:18697440-18697459 None:intergenic 45.0%
! TTTGCGGTATGCGGGATTTT+AGG + chr2.1:18699181-18699200 MS.gene031308:CDS 45.0%
! TTTGGAGTGTTTGCGGTATG+CGG + chr2.1:18699172-18699191 MS.gene031308:CDS 45.0%
!! ACATTCAATGGATTGGAGGC+TGG + chr2.1:18699256-18699275 MS.gene031308:CDS 45.0%
!! ACCAATCATCAAGTTGGGAG+GGG + chr2.1:18694948-18694967 MS.gene031308:intron 45.0%
!! AGACCAATCATCAAGTTGGG+AGG + chr2.1:18694946-18694965 MS.gene031308:intron 45.0%
!! GACCAATCATCAAGTTGGGA+GGG + chr2.1:18694947-18694966 MS.gene031308:intron 45.0%
!! GGCTGCATTAAGTGGGTTAA+GGG + chr2.1:18695724-18695743 MS.gene031308:intron 45.0%
!! TGGCTGCATTAAGTGGGTTA+AGG + chr2.1:18695723-18695742 MS.gene031308:intron 45.0%
!!! CACCGTAGAAGCATCTTTTC+CGG - chr2.1:18694650-18694669 None:intergenic 45.0%
!!! GATGCCTTTTGGAGTGTTTG+CGG + chr2.1:18699165-18699184 MS.gene031308:CDS 45.0%
!! GTAATTAATATAAAAATATT+AGG - chr2.1:18695095-18695114 None:intergenic 5.0%
!!! TTAGTATATTTAATTTTTTA+AGG - chr2.1:18695470-18695489 None:intergenic 5.0%
AAGATGATGAGCCATGCGAC+AGG + chr2.1:18696494-18696513 MS.gene031308:intron 50.0%
ACTGCGGTTATCGTGAATGC+TGG - chr2.1:18698857-18698876 None:intergenic 50.0%
AGCGGCATAGCAATTCTCTC+TGG + chr2.1:18698368-18698387 MS.gene031308:CDS 50.0%
CACAAGTCTTGCTTGGGCTT+TGG + chr2.1:18694498-18694517 MS.gene031308:CDS 50.0%
CACGATAACCGCAGTGTTGT+TGG + chr2.1:18698862-18698881 MS.gene031308:CDS 50.0%
CCAAGATGGTACCTTGTTCG+AGG + chr2.1:18698491-18698510 MS.gene031308:CDS 50.0%
CGCCGGAAAAGATGCTTCTA+CGG + chr2.1:18694645-18694664 MS.gene031308:CDS 50.0%
CTTGGAGACTCGGAGATGAA+GGG - chr2.1:18698476-18698495 None:intergenic 50.0%
GCTCGAGAAGAAGTAGAAGG+TGG - chr2.1:18698351-18698370 None:intergenic 50.0%
GGAACCAAATTAGAACCCCG+TGG - chr2.1:18696841-18696860 None:intergenic 50.0%
GTATAGGATGGAAGGGATGG+AGG - chr2.1:18698438-18698457 None:intergenic 50.0%
TCATCTCCGAGTCTCCAAGA+TGG + chr2.1:18698477-18698496 MS.gene031308:CDS 50.0%
TCGCCTACACCTTCCAAACA+TGG + chr2.1:18698393-18698412 MS.gene031308:CDS 50.0%
TCTTGGAGACTCGGAGATGA+AGG - chr2.1:18698477-18698496 None:intergenic 50.0%
TGTAGAGTGTGCGCCATGTT+TGG - chr2.1:18698409-18698428 None:intergenic 50.0%
TGTCCTTGCACTCGATGAAG+AGG + chr2.1:18698586-18698605 MS.gene031308:CDS 50.0%
! ACCCCTCCCAACTTGATGAT+TGG - chr2.1:18694952-18694971 None:intergenic 50.0%
! ATCGGAGTTGTTTCCTACGG+TGG + chr2.1:18699057-18699076 MS.gene031308:CDS 50.0%
! CCTCGAACAAGGTACCATCT+TGG - chr2.1:18698494-18698513 None:intergenic 50.0%
! TTGGAGTGTTTGCGGTATGC+GGG + chr2.1:18699173-18699192 MS.gene031308:CDS 50.0%
!! CGGTATGCGGGATTTTAGGT+GGG + chr2.1:18699185-18699204 MS.gene031308:CDS 50.0%
!! GCGCCTTTTGTGGTCGTTTT+AGG + chr2.1:18699136-18699155 MS.gene031308:CDS 50.0%
!! TTTTGATGGGCCAATCGGCT+CGG - chr2.1:18698309-18698328 None:intergenic 50.0%
AGTGCAAGGACAACTCCGTC+TGG - chr2.1:18698578-18698597 None:intergenic 55.0%
CAAAATCGCCCCCATTTGCG+CGG - chr2.1:18699116-18699135 None:intergenic 55.0%
CAAGGACAACTCCGTCTGGA+AGG - chr2.1:18698574-18698593 None:intergenic 55.0%
CGGAGATGAAGGGAAGGACA+AGG - chr2.1:18698466-18698485 None:intergenic 55.0%
CGTATCGCAGACACTTCCAC+CGG - chr2.1:18694602-18694621 None:intergenic 55.0%
GAGACTCGGAGATGAAGGGA+AGG - chr2.1:18698472-18698491 None:intergenic 55.0%
GAGTGTGCGCCATGTTTGGA+AGG - chr2.1:18698405-18698424 None:intergenic 55.0%
GCCGCTCGAGAAGAAGTAGA+AGG - chr2.1:18698354-18698373 None:intergenic 55.0%
TGGAGGCTGGACTTGCATGA+AGG + chr2.1:18699269-18699288 MS.gene031308:CDS 55.0%
TGGTAAGGAACGCAGCGCTT+GGG + chr2.1:18699077-18699096 MS.gene031308:CDS 55.0%
! AACACCGCCAGTGCTGAAAC+CGG - chr2.1:18698261-18698280 None:intergenic 55.0%
! CCGATTGGCCCATCAAAACG+CGG + chr2.1:18698311-18698330 MS.gene031308:CDS 55.0%
! GAAGGTATGGAGTGTTCCGC+CGG + chr2.1:18694580-18694599 MS.gene031308:CDS 55.0%
! GCGCCATGTTTGGAAGGTGT+AGG - chr2.1:18698399-18698418 None:intergenic 55.0%
! GCGGTATGCGGGATTTTAGG+TGG + chr2.1:18699184-18699203 MS.gene031308:CDS 55.0%
!! CCGCGTTTTGATGGGCCAAT+CGG - chr2.1:18698314-18698333 None:intergenic 55.0%
!! CGGTGGAAGTGTCTGCGATA+CGG + chr2.1:18694600-18694619 MS.gene031308:CDS 55.0%
!! GGCGATTTTGGCGCCTTTTG+TGG + chr2.1:18699126-18699145 MS.gene031308:CDS 55.0%
ATCGCAGACACTTCCACCGG+CGG - chr2.1:18694599-18694618 None:intergenic 60.0%
CGACACAAGCCGCGCAAATG+GGG + chr2.1:18699104-18699123 MS.gene031308:CDS 60.0%
GACACAAGCCGCGCAAATGG+GGG + chr2.1:18699105-18699124 MS.gene031308:CDS 60.0%
GCGACACAAGCCGCGCAAAT+GGG + chr2.1:18699103-18699122 MS.gene031308:CDS 60.0%
GCTGCGTTCCTTACCACCGT+AGG - chr2.1:18699073-18699092 None:intergenic 60.0%
GTGGTAAGGAACGCAGCGCT+TGG + chr2.1:18699076-18699095 MS.gene031308:CDS 60.0%
TGCGACACAAGCCGCGCAAA+TGG + chr2.1:18699102-18699121 MS.gene031308:CDS 60.0%
TGCTGAAACCGGTGAGGAGG+CGG - chr2.1:18698250-18698269 None:intergenic 60.0%
TGGCCCATCAAAACGCGGCA+TGG + chr2.1:18698316-18698335 MS.gene031308:CDS 60.0%
TGTCAGTCACGCCTGTCGCA+TGG - chr2.1:18696508-18696527 None:intergenic 60.0%
! CAGTGCTGAAACCGGTGAGG+AGG - chr2.1:18698253-18698272 None:intergenic 60.0%
! CGCGCAAATGGGGGCGATTT+TGG + chr2.1:18699114-18699133 MS.gene031308:CDS 60.0%
! TGGCAAGGACGAAGGCGCAA+AGG - chr2.1:18698286-18698305 None:intergenic 60.0%
!! CTCACCGGTTTCAGCACTGG+CGG + chr2.1:18698254-18698273 MS.gene031308:CDS 60.0%
!! CTCCTCACCGGTTTCAGCAC+TGG + chr2.1:18698251-18698270 MS.gene031308:CDS 60.0%
!! GGTTTCAGCACTGGCGGTGT+TGG + chr2.1:18698260-18698279 MS.gene031308:CDS 60.0%
GTCCTTGCCACCGAGCCGAT+TGG + chr2.1:18698296-18698315 MS.gene031308:CDS 65.0%
TCGTCGTGGCAGTGGATCGC+CGG + chr2.1:18694628-18694647 MS.gene031308:CDS 65.0%
TGAAACCGGTGAGGAGGCGG+AGG - chr2.1:18698247-18698266 None:intergenic 65.0%
! CGCCAGTGCTGAAACCGGTG+AGG - chr2.1:18698256-18698275 None:intergenic 65.0%
! GGTATGGAGTGTTCCGCCGG+TGG + chr2.1:18694583-18694602 MS.gene031308:CDS 65.0%
!! TGATGGGCCAATCGGCTCGG+TGG - chr2.1:18698306-18698325 None:intergenic 65.0%
AACCGGTGAGGAGGCGGAGG+AGG - chr2.1:18698244-18698263 None:intergenic 70.0%
GCGATACGGCGTCGTCGTCG+TGG + chr2.1:18694614-18694633 MS.gene031308:CDS 70.0%
GTCCTCCTCCGCCTCCTCAC+CGG + chr2.1:18698239-18698258 MS.gene031308:CDS 70.0%
!! CGGCTCGGTGGCAAGGACGA+AGG - chr2.1:18698294-18698313 None:intergenic 70.0%
!! GGCCAATCGGCTCGGTGGCA+AGG - chr2.1:18698301-18698320 None:intergenic 70.0%
CGGCGTCGTCGTCGTGGCAG+TGG + chr2.1:18694620-18694639 MS.gene031308:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 18694340 18699288 18694340 ID=MS.gene031308
chr2.1 mRNA 18694340 18699288 18694340 ID=MS.gene031308.t1;Parent=MS.gene031308
chr2.1 exon 18694340 18694748 18694340 ID=MS.gene031308.t1.exon1;Parent=MS.gene031308.t1
chr2.1 CDS 18694340 18694748 18694340 ID=cds.MS.gene031308.t1;Parent=MS.gene031308.t1
chr2.1 exon 18698114 18699288 18698114 ID=MS.gene031308.t1.exon2;Parent=MS.gene031308.t1
chr2.1 CDS 18698114 18699288 18698114 ID=cds.MS.gene031308.t1;Parent=MS.gene031308.t1
Gene Sequence

>MS.gene031308

ATGTCGGCTACATTCTCATCCCTTTCCGATGATCTCAACTCACCGATCTTACCACCATCATCAAAAACCACCAATGAAACTGAAAAAATCTGCATCGATGAGATGCTTGAGAAATACTGTGGTGAGTTTGGAAAATGGCAGCTGAAACACTTCATTCTCACAAGTCTTGCTTGGGCTTTGGAAGCTTTTCATACTATGGTTATGATTTTTGCTGATAGGGAACCTGATTGGAAGTGTGTTGAAGGTATGGAGTGTTCCGCCGGTGGAAGTGTCTGCGATACGGCGTCGTCGTCGTGGCAGTGGATCGCCGGAAAAGATGCTTCTACGGTGTCTGAATGGAGTTTGATTTGTGGTGATAAGTTTAAGGTTGGACTTGTTCAAGCTCTTTTCTTTGCTGGGTGTATGATTGGTTAGTTCACTCATTTTTCTCTTATCTCTACATTTTTTTTTATTGATTATTGTTGTATTTTATTGGAGTAATTGTTTCATCGTTTATTCAAATTAAAAGATAAAATGAATGAAATGGAGAGAAAGTATTATGAGGCTATCAAAATCTAACCAATATATCTTTAGAGCTATATAGATATGAACTTTAGACCTGCTATAAGACCAATCATCAAGTTGGGAGGGGTTGTGATCATTCTAACTACGCTTATTCTTTATCTTTCAAAAAAAAAAACTATGCTTTTTCTTTAATTCAAATTTTATGTTTTTCGTCAAGATTCATTACTTCAATTTAATGTATAAGATATCCTAATATTTTTATATTAATTACTTCAATCATCTTTTATTAATTGTGTCACATATAAAATATTTGTTTATCTTATTTATCAAAATATTAATAAAATATTAGTTACATTTATTTTCCAAAGTAGTCCTTTTTATTGAATCTATATTTGTTAATTTTTATTGAATTTCTTCTTATTCAATTTCTTTTAGGGAAACTTATCCAGTTGTTCTATTAACTATACTAAAAAATTATTATATTAACTATTTATTTTTTTGATTCCACTGACTTTGATTTTGGTGATTTTTGTGACTTTGTTTTATCTTTTTTTTAACTGCTTATTCATTCTCATTAAAATAATTTATTTTAATTATTTACTCGTCAACTAAATACACTAAATCCTTAAAAAATTAAATATACTAAAATCACCACAGTTATCAATTGTCAGTATCAACCAACTATTTGCACGGAGAGACTAATAATTTCATAACATTGTGATGGTCCACAAACGTAAATTATTTTATGAGTAATAAAGATATATTGGTTAGATTTTGATAGCCTCATAATACTTAATGAATAAGGCTATAAAAATAAGTGGCTTATTTTATGAGTAATAAAGATATATTGGTTAGATTTTGATAGTCCCATCACAAACGTGGCTGCATTAAGTGGGTTAAGGGACGAAAATTTAAATGATTAAACTTTGCAAGGGTGATTTGTTAGGATTAACGATTACAGGGACCAATTTTTAAATGACCTCTAATTGCAGGGACGAAACACATATTAAAGCCTTATTTTTATACCTACATCAAAGGACATTCATCATATTGTCGCAGAAATTCATTTATTTTATGAGTACATTTGAAAATGCAAAATTTTCATTAGAGGTCAATTTAACTAGTGTAAGTGTAAACTAGTTACACTGCATATCTCAATTATTATAATTTATCGTTGGTGAGGCTGCATTTAACTCAACCAATAGATGATTCTCAAGTTCACGTAGACGATCTTAAGGAATAGATATATTTGTAAATCACAGATGTCTCCTTTTTTACTTATATAAATTAGAAGAGATAATTAGTTTTTTTATCAATAAAGTTTTCAGCCAATGTCGTTTGTTGAAGAACGGAAAAATTGTTGAACTTCTTTATTTTATAAAAGAAATCTCACAATCTTAACTCGAGATTTTGTCCTTATATGGGCTATAAGTTTATTATTAAAATTATCAATAGCTAGCTTTGTTTTTCTATGAGAGAATAGTAATAAATAATAATATTAATAAATAATAACTAGCTGTGAATGTTTTTCTTTTTTTTTTGAAAAGTTAGCTGTGAATGGTTTATAGACTATCATGTGAATAAATAAAGTATTCATAATTTTCTCTAAGGTGAGAACATAGATATAGATAAAGAATAAAGAAAAGAAAAAAGATGATGAGCCATGCGACAGGCGTGACTGACATGTACAACTTTGCTATATATAAAAAAAAATGTACAACTTTTTAATTTCTTAAATAAATTTTCATCTTTTCATTTTAATTAGAATTAAATAAATTCTCTTTCATTCTCTCCACACAGTCCATTTCTAGAAAATCTTTTCTATATTATATTTTGCAAGACATCAAATTTTTGTGATAAGGAACGTGCAACTTGAGGGAAGTACTAAAGTCTAAGAAACCTGAAAGAGAAAAGGACCACAGCATACCTTTCACTTTCTATTTGTCGTCTGGCTAGTTCGATTAATTTCTAGTAATTTAATTAGTTTACCAGTTCCACGGGGTTCTAATTTGGTTCCAAAATTTCCAAGAACTAGTGGACAACAACTTTTGAGGCAAAATAATATAATTAGATTAGATAACAATGATAATGATAACGATAATAATACTAATAAAACAGTTACGTAGGCGATCCATTGTGTATTTCTATATTTCTGTTTGTATATATCCATGAAACTTGTGTGTCGACTAACTATTCATATTGACATAACGGGGATAAAATGTTACTAGGGGGTTTGTCTTACCTTACTATATACTCTAATGATCATAATGAAGATATCATAAGTTAAACTAAAAATATGCACCATATACAATATAGTGATTAATGTTTTGGTTTTAGATTGGGATATGCATATTCAAATTATAAACCTGCCTCTTTCTTTACTAAAGTTTTATACTGACGTTAGAAATAGACACACTCTTTTAATTATGTGTATTATTAAATCAATTTACATGCATGTATAGTTGTAAAATATTGTAAACTAAACTTTGTGTTATTTGTTACAAGTTTTATATTTTGGATAGAAAAATGCTGGTGGGTTATATTAGTTTTTAAGGTTGAACTTTGGACTTCCTTCTAGTTAGTTCTTTAGTGTCCTTCGATCAGCACACCAATCAATCTGTCTATTTTGAAATTTTTAAATATAGTTTGACCAATTTTGTAGAAAATATAGGTTGTAGTGGTATCTTGAGGGGATATTATGTGAGAGTGAAGGAATCTTTCTTAGGGGAATGGAATCATGCCAATGTATGTTTCACTTTATAGTCTTTATTATCGGTCCAACAAAGAGAAATATCAAGAACAAGTTCATTTTGTACTCTCTATAACACTTGTTTTTTATTAAGTGAAATTTATGTGAATCTCATTATTTTATGTGAGATCAACTTTTAAATTGTAAAATTTATATGAGTTTCATCCAATAAAATAGTAAGTGTTAGAGAGAGTGTTTCATCCAATAAAATGATCAACATTCTCTCAGACACTCACTAATAATATACTATATGTCTATATCCTAAGCAATTTGCTACTACATGTTTTTAATTATGAATGAGAACCAATATCAATCAATTTACGTCACAAATAAATTTGTCTTTTTTTTGACAAAAAATAAATTTGTCTTGTTGTCTCATTTATTTTTACTTTTAATTTTTTCATCCTTAAATTATATATACTTCTTATTAAAAAAACATAATACATACTATTACAAGCTTTTCTAATAGCTGAATAATCATGACATAAAAACAACTTATGATTTTTATGTTGTCATTTCAGGAGCTGGAGTATTTGGACACCTTTCAGATTCATCTCTAGGAAGAAAGGGTTCTCTCATAGTTGTTTGTGCCCTAAACACCATCTTTGGCTGCTTAACAGCATTCTCCCCAAATTATTGGATCTATGTCCTCCTCCGCCTCCTCACCGGTTTCAGCACTGGCGGTGTTGGCCTTTGCGCCTTCGTCCTTGCCACCGAGCCGATTGGCCCATCAAAACGCGGCATGGCAGGAATGTCCACCTTCTACTTCTTCTCGAGCGGCATAGCAATTCTCTCTGGCATCGCCTACACCTTCCAAACATGGCGCACACTCTACATTGTTTCCTCCATCCCTTCCATCCTATACATAATCCTTGTCCTTCCCTTCATCTCCGAGTCTCCAAGATGGTACCTTGTTCGAGGAAGAATAAACGAAGCGACTACACTCATGTCCACAATTGCTTCTTACAATGGAAAACACCTTCCAGACGGAGTTGTCCTTGCACTCGATGAAGAGGTATCAAATTCAAAAAAATCAACAAGTGATCTTGAATACAACCTAATTAGCTACGTGGAAAACAAGGATGCACAAGTTGGATCCATCATTGATGTGATTCGCTACCCAGTTACACGTATTAGGTTATTTCTAGCAATAGCTCTTAACTTCTTAGCCTCGGTGGTGTATTATGGTCTTAGCTTAAACGTTACAAACCTCGAAACTAACCTCTACATGAATGTGCTTCTAAATGCGGTCGCAGAGATGCCAGCATTCACGATAACCGCAGTGTTGTTGGATAGATTTGGAAGGAAACCATTGACAATAGGGACAATGTGGTTTAGTGGATTCTTTTGTTTGCTGGGGAGTTTTATGGGTAATGTAGGGGTGTGGAAAGTAATTAAATTGGTGTGTGGTGTTTTAGGGATATTCGGAATGGCGGGAACTTATAATTTGTTGTTTATTTACACATCGGAGTTGTTTCCTACGGTGGTAAGGAACGCAGCGCTTGGGAGTGCGACACAAGCCGCGCAAATGGGGGCGATTTTGGCGCCTTTTGTGGTCGTTTTAGGTAGTTGGATGCCTTTTGGAGTGTTTGCGGTATGCGGGATTTTAGGTGGGATGTTTGCGTTTTATCTGCCGGAGACACTGAATATGCCTCTTTATGATACATTCAATGGATTGGAGGCTGGACTTGCATGA
Protein sequence

>MS.gene031308.t1

MSATFSSLSDDLNSPILPPSSKTTNETEKICIDEMLEKYCGEFGKWQLKHFILTSLAWALEAFHTMVMIFADREPDWKCVEGMECSAGGSVCDTASSSWQWIAGKDASTVSEWSLICGDKFKVGLVQALFFAGCMIGAGVFGHLSDSSLGRKGSLIVVCALNTIFGCLTAFSPNYWIYVLLRLLTGFSTGGVGLCAFVLATEPIGPSKRGMAGMSTFYFFSSGIAILSGIAYTFQTWRTLYIVSSIPSILYIILVLPFISESPRWYLVRGRINEATTLMSTIASYNGKHLPDGVVLALDEEVSNSKKSTSDLEYNLISYVENKDAQVGSIIDVIRYPVTRIRLFLAIALNFLASVVYYGLSLNVTNLETNLYMNVLLNAVAEMPAFTITAVLLDRFGRKPLTIGTMWFSGFFCLLGSFMGNVGVWKVIKLVCGVLGIFGMAGTYNLLFIYTSELFPTVVRNAALGSATQAAQMGAILAPFVVVLGSWMPFGVFAVCGILGGMFAFYLPETLNMPLYDTFNGLEAGLA