AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84416


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84416.t1 MTR_7g446340 98.679 530 7 0 1 530 1 530 0.0 1056
MS.gene84416.t1 MTR_6g007340 98.679 530 7 0 1 530 1 530 0.0 1056
MS.gene84416.t1 MTR_2g013310 65.835 521 173 1 4 524 7 522 0.0 696
MS.gene84416.t1 MTR_2g013310 68.374 449 142 0 76 524 1 449 0.0 626
MS.gene84416.t1 MTR_3g116240 49.688 481 222 4 42 502 11 491 1.32e-163 474
MS.gene84416.t1 MTR_4g069500 47.732 507 244 6 41 527 12 517 1.47e-163 474
MS.gene84416.t1 MTR_6g088450 47.447 470 242 2 30 494 33 502 2.30e-160 466
MS.gene84416.t1 MTR_4g072030 46.967 511 249 6 36 529 13 518 6.84e-160 465
MS.gene84416.t1 MTR_4g069500 47.863 468 227 5 76 527 1 467 1.56e-149 437
MS.gene84416.t1 MTR_8g103500 46.781 466 240 5 45 502 6 471 2.42e-149 437
MS.gene84416.t1 MTR_8g077890 44.200 500 263 5 38 521 2 501 1.60e-147 433
MS.gene84416.t1 MTR_5g075300 44.919 492 252 6 41 515 5 494 6.52e-144 424
MS.gene84416.t1 MTR_5g019870 38.272 486 282 4 49 517 9 493 9.05e-113 343
MS.gene84416.t1 MTR_4g069500 44.985 329 164 5 215 527 1 328 1.26e-86 271
MS.gene84416.t1 MTR_3g084110 34.255 470 289 6 54 514 27 485 5.42e-80 259
MS.gene84416.t1 MTR_1g116660 33.891 478 295 6 37 505 20 485 9.07e-78 253
MS.gene84416.t1 MTR_7g082270 34.016 488 297 10 18 499 31 499 1.18e-71 237
MS.gene84416.t1 MTR_1g116650 31.590 478 293 5 37 505 63 515 1.19e-71 238
MS.gene84416.t1 MTR_7g005910 32.272 471 298 7 46 505 22 482 9.82e-71 234
MS.gene84416.t1 MTR_6g018790 33.671 493 304 10 18 505 71 545 5.61e-70 234
MS.gene84416.t1 MTR_5g020270 29.317 498 316 10 17 503 17 489 3.10e-66 223
MS.gene84416.t1 MTR_4g077740 28.994 507 318 12 17 499 9 497 3.67e-66 223
MS.gene84416.t1 MTR_7g113970 31.504 492 293 12 28 500 27 493 3.03e-64 218
MS.gene84416.t1 MTR_8g077310 32.308 455 279 9 55 499 47 482 3.05e-64 217
MS.gene84416.t1 MTR_7g113960 29.167 504 314 11 21 515 2 471 2.63e-62 212
MS.gene84416.t1 MTR_5g077580 28.804 552 270 10 54 505 25 553 6.71e-62 213
MS.gene84416.t1 MTR_5g020270 31.785 409 248 8 106 503 1 389 8.40e-62 208
MS.gene84416.t1 MTR_8g077310 33.663 404 239 9 106 499 1 385 3.42e-60 204
MS.gene84416.t1 MTR_8g077300 30.339 501 311 11 16 502 1 477 5.27e-60 206
MS.gene84416.t1 MTR_7g082270 34.033 429 258 10 18 440 31 440 6.92e-60 205
MS.gene84416.t1 MTR_1g022315 30.670 463 285 8 55 503 49 489 1.05e-59 205
MS.gene84416.t1 MTR_7g094450 29.630 486 311 11 21 499 9 470 3.56e-58 201
MS.gene84416.t1 MTR_4g118610 30.738 488 315 8 19 499 12 483 5.90e-58 201
MS.gene84416.t1 MTR_5g020270 28.112 498 301 12 17 503 17 468 9.62e-58 199
MS.gene84416.t1 MTR_2g020710 29.857 489 315 9 19 499 12 480 6.55e-57 197
MS.gene84416.t1 MTR_1g022315 31.796 412 245 8 106 503 1 390 8.12e-56 192
MS.gene84416.t1 MTR_7g094110 29.498 478 300 11 28 499 26 472 1.14e-55 194
MS.gene84416.t1 MTR_2g020710 32.512 406 249 7 100 499 5 391 1.30e-53 186
MS.gene84416.t1 MTR_1g104750 27.049 488 317 8 55 514 23 499 1.74e-52 186
MS.gene84416.t1 MTR_1g104770 27.586 493 316 9 51 514 20 500 2.09e-51 183
MS.gene84416.t1 MTR_2g049020 34.320 338 214 5 54 387 25 358 2.27e-51 185
MS.gene84416.t1 MTR_2g049020 43.750 96 54 0 410 505 461 556 4.84e-17 84.7
MS.gene84416.t1 MTR_3g008160 25.996 477 318 10 55 506 24 490 1.05e-50 181
MS.gene84416.t1 MTR_8g102860 27.381 504 321 12 47 520 19 507 1.79e-50 181
MS.gene84416.t1 MTR_3g074410 26.349 482 309 12 55 505 26 492 1.85e-50 181
MS.gene84416.t1 MTR_2g026160 32.337 368 224 7 42 391 6 366 4.65e-50 181
MS.gene84416.t1 MTR_2g026160 41.304 92 54 0 413 504 467 558 1.83e-14 76.6
MS.gene84416.t1 MTR_5g006070 26.747 501 320 12 55 524 23 507 5.59e-50 180
MS.gene84416.t1 MTR_8g102860 30.170 411 263 9 120 520 59 455 8.51e-50 178
MS.gene84416.t1 MTR_0009s0370 28.024 496 317 11 51 517 18 502 8.57e-50 179
MS.gene84416.t1 MTR_3g008160 27.251 411 285 6 101 506 40 441 3.87e-49 176
MS.gene84416.t1 MTR_5g006070 26.304 441 300 8 94 524 34 459 1.04e-48 175
MS.gene84416.t1 MTR_0204s0020 26.347 501 321 11 36 505 2 485 1.94e-48 175
MS.gene84416.t1 MTR_6g087040 27.615 478 310 12 54 505 25 492 4.33e-48 174
MS.gene84416.t1 MTR_6g088375 27.615 478 310 12 54 505 25 492 4.33e-48 174
MS.gene84416.t1 MTR_0204s0020 26.157 497 324 11 36 505 2 482 4.81e-48 174
MS.gene84416.t1 MTR_3g080240 29.065 492 319 13 21 499 54 528 5.90e-48 174
MS.gene84416.t1 MTR_3g023480 27.668 506 324 11 51 526 18 511 7.70e-48 174
MS.gene84416.t1 MTR_7g094110 28.330 473 292 10 28 499 26 452 2.97e-47 171
MS.gene84416.t1 MTR_4g064820 31.105 389 230 8 45 407 86 462 5.62e-47 171
MS.gene84416.t1 MTR_1g104780 26.166 493 314 10 62 520 29 505 6.58e-47 171
MS.gene84416.t1 MTR_5g041550 26.240 484 318 10 51 505 20 493 1.82e-46 170
MS.gene84416.t1 MTR_1g038600 27.742 465 309 9 54 505 22 472 2.01e-46 169
MS.gene84416.t1 MTR_3g074270 27.368 475 302 11 43 498 12 462 1.19e-45 167
MS.gene84416.t1 MTR_1g038630 26.860 484 307 10 54 505 22 490 2.12e-45 167
MS.gene84416.t1 MTR_2g048720 33.429 350 221 6 54 398 25 367 2.18e-45 168
MS.gene84416.t1 MTR_0204s0040 26.166 493 314 11 45 505 19 493 2.76e-45 166
MS.gene84416.t1 MTR_4g116770 26.166 493 314 11 45 505 215 689 2.71e-44 167
MS.gene84416.t1 MTR_4g091370 27.202 511 320 12 45 516 14 511 3.34e-44 164
MS.gene84416.t1 MTR_4g090600 27.345 501 315 12 54 516 22 511 3.90e-44 164
MS.gene84416.t1 MTR_3g007910 25.462 487 312 9 38 505 6 460 4.71e-44 162
MS.gene84416.t1 MTR_8g077310 31.694 366 225 7 55 413 47 394 1.25e-43 160
MS.gene84416.t1 MTR_3g008170 25.153 489 331 10 45 506 11 491 1.35e-43 162
MS.gene84416.t1 MTR_4g116790 24.655 507 342 11 45 525 17 509 1.58e-43 162
MS.gene84416.t1 MTR_3g074390 25.519 482 315 12 51 502 25 492 2.16e-43 161
MS.gene84416.t1 MTR_4g013205 28.750 480 304 11 33 500 17 470 4.26e-43 160
MS.gene84416.t1 MTR_2g020710 28.947 418 270 8 19 428 12 410 1.94e-42 157
MS.gene84416.t1 MTR_3g093060 25.537 419 294 7 101 511 42 450 2.30e-42 157
MS.gene84416.t1 MTR_2g020710 29.017 417 269 8 19 427 12 409 3.23e-42 156
MS.gene84416.t1 MTR_5g094760 24.138 493 336 9 39 505 11 491 8.52e-42 157
MS.gene84416.t1 MTR_6g087910 29.400 500 303 15 24 500 12 484 2.31e-41 155
MS.gene84416.t1 MTR_4g118610 28.777 417 275 7 19 428 12 413 3.79e-41 154
MS.gene84416.t1 MTR_2g026140 31.161 353 213 8 47 390 19 350 2.76e-40 154
MS.gene84416.t1 MTR_7g113970 28.814 413 254 10 28 421 27 418 9.04e-40 149
MS.gene84416.t1 MTR_7g091690 24.089 494 337 9 38 505 10 491 3.26e-39 149
MS.gene84416.t1 MTR_3g093010 25.052 479 309 10 62 505 29 492 2.08e-38 147
MS.gene84416.t1 MTR_5g082540 25.407 492 325 11 42 505 13 490 5.86e-38 146
MS.gene84416.t1 MTR_2g020710 27.419 372 254 4 19 389 12 368 1.19e-37 142
MS.gene84416.t1 MTR_7g113960 26.087 391 254 8 21 404 2 364 4.92e-36 139
MS.gene84416.t1 MTR_3g116060 33.333 234 153 3 53 285 2 233 1.54e-32 132
MS.gene84416.t1 MTR_3g116060 32.159 227 139 6 287 502 495 717 6.78e-20 94.0
MS.gene84416.t1 MTR_3g074320 28.302 318 206 8 213 520 31 336 1.07e-31 125
MS.gene84416.t1 MTR_3g074340 28.302 318 206 8 213 520 31 336 1.58e-31 125
MS.gene84416.t1 MTR_3g074380 25.779 353 230 9 51 382 23 364 3.96e-31 124
MS.gene84416.t1 MTR_3g074370 28.333 300 195 6 213 502 31 320 1.44e-30 122
MS.gene84416.t1 MTR_5g024740 33.197 244 154 7 55 295 4 241 4.19e-30 125
MS.gene84416.t1 MTR_5g024740 31.276 243 152 7 287 517 487 726 1.45e-17 86.7
MS.gene84416.t1 MTR_4g116790 24.438 356 241 6 45 381 17 363 8.03e-30 121
MS.gene84416.t1 MTR_5g044910 32.377 244 156 6 55 295 4 241 7.62e-29 121
MS.gene84416.t1 MTR_5g044910 30.973 226 143 6 287 502 485 707 1.15e-17 87.0
MS.gene84416.t1 MTR_8g073100 33.047 233 150 5 53 280 2 233 1.67e-27 117
MS.gene84416.t1 MTR_8g073100 26.512 215 149 1 297 502 491 705 6.64e-14 75.1
MS.gene84416.t1 MTR_3g118530 34.536 194 123 4 66 256 15 207 3.08e-27 116
MS.gene84416.t1 MTR_3g118530 33.645 214 127 5 66 276 15 216 4.25e-27 116
MS.gene84416.t1 MTR_3g118530 31.086 267 158 6 260 502 463 727 3.84e-22 100
MS.gene84416.t1 MTR_3g074400 22.330 412 266 13 101 492 39 416 5.50e-19 89.7
MS.gene84416.t1 MTR_1g074940 24.766 428 278 13 105 495 80 500 1.45e-16 82.8
MS.gene84416.t1 MTR_5g096000 29.167 168 117 2 38 204 6 172 5.01e-14 73.6
MS.gene84416.t1 MTR_4g081490 26.108 406 234 22 113 495 71 433 4.50e-13 71.6
MS.gene84416.t1 MTR_3g082700 23.928 443 279 14 104 495 76 511 6.37e-13 71.6
MS.gene84416.t1 MTR_1g069935 23.214 448 287 16 99 499 75 512 1.15e-12 70.9
MS.gene84416.t1 MTR_5g077590 45.783 83 45 0 410 492 304 386 1.44e-12 70.1
MS.gene84416.t1 MTR_4g005090 25.170 441 249 19 106 497 80 488 6.20e-12 68.2
MS.gene84416.t1 MTR_1g074930 24.094 469 294 16 104 519 75 534 2.97e-11 66.2
MS.gene84416.t1 MTR_4g064807 39.474 76 46 0 424 499 1 76 3.70e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84416.t1 AT2G20780 70.667 525 142 4 5 525 7 523 0.0 746
MS.gene84416.t1 AT2G20780 73.529 442 115 1 84 525 26 465 0.0 664
MS.gene84416.t1 AT3G18830 47.976 494 237 5 47 524 31 520 3.97e-160 466
MS.gene84416.t1 AT2G16120 47.166 494 240 4 45 517 16 509 2.05e-155 453
MS.gene84416.t1 AT2G16130 47.154 492 237 4 45 513 16 507 9.61e-155 452
MS.gene84416.t1 AT4G36670 46.526 475 239 4 46 505 8 482 1.55e-149 438
MS.gene84416.t1 AT2G18480 47.170 477 238 4 40 502 7 483 8.03e-148 434
MS.gene84416.t1 AT2G43330 32.535 501 314 9 37 524 16 505 1.14e-71 237
MS.gene84416.t1 AT5G17010 29.783 507 306 11 21 499 15 499 3.16e-69 231
MS.gene84416.t1 AT5G17010 29.783 507 306 11 21 499 15 499 3.16e-69 231
MS.gene84416.t1 AT5G17010 29.783 507 306 11 21 499 15 499 3.16e-69 231
MS.gene84416.t1 AT1G75220 30.584 497 309 9 17 503 17 487 1.21e-65 221
MS.gene84416.t1 AT5G16150 33.402 485 297 11 23 500 75 540 2.22e-65 222
MS.gene84416.t1 AT5G16150 33.402 485 297 11 23 500 75 540 2.22e-65 222
MS.gene84416.t1 AT5G16150 33.402 485 297 11 23 500 75 540 2.22e-65 222
MS.gene84416.t1 AT3G05150 30.738 488 307 9 21 501 5 468 1.03e-63 215
MS.gene84416.t1 AT3G05150 30.738 488 307 9 21 501 5 468 1.03e-63 215
MS.gene84416.t1 AT3G05150 30.738 488 307 9 21 501 5 468 1.26e-63 215
MS.gene84416.t1 AT5G59250 30.595 487 307 10 34 499 77 553 1.47e-63 217
MS.gene84416.t1 AT1G19450 30.078 512 325 12 1 503 1 488 1.84e-63 215
MS.gene84416.t1 AT1G08930 29.637 496 311 10 22 505 25 494 5.42e-62 211
MS.gene84416.t1 AT1G08930 29.637 496 311 10 22 505 25 494 5.42e-62 211
MS.gene84416.t1 AT3G03090 29.941 511 309 12 21 499 6 499 1.46e-61 211
MS.gene84416.t1 AT2G48020 30.947 475 294 9 31 499 12 458 2.49e-60 206
MS.gene84416.t1 AT2G48020 30.947 475 294 9 31 499 12 458 2.49e-60 206
MS.gene84416.t1 AT3G05165 28.601 479 312 8 31 499 2 460 2.52e-60 206
MS.gene84416.t1 AT3G05165 28.601 479 312 8 31 499 2 460 2.52e-60 206
MS.gene84416.t1 AT3G05165 28.601 479 312 8 31 499 2 460 2.52e-60 206
MS.gene84416.t1 AT5G18840 31.377 494 301 11 22 505 16 481 6.51e-59 203
MS.gene84416.t1 AT3G05160 28.723 470 299 9 40 499 8 451 6.69e-59 202
MS.gene84416.t1 AT5G27350 29.873 472 293 12 43 500 15 462 2.38e-58 201
MS.gene84416.t1 AT5G27360 29.193 483 314 11 27 499 1 465 6.69e-58 200
MS.gene84416.t1 AT5G27360 29.193 483 314 11 27 499 49 513 2.62e-57 199
MS.gene84416.t1 AT1G54730 30.496 423 268 9 83 499 60 462 2.71e-57 198
MS.gene84416.t1 AT3G05155 30.149 471 280 11 45 499 18 455 2.21e-56 196
MS.gene84416.t1 AT4G04760 30.573 471 283 12 51 505 28 470 1.01e-55 194
MS.gene84416.t1 AT4G04760 31.019 432 265 9 85 505 2 411 4.87e-55 191
MS.gene84416.t1 AT5G26250 29.518 498 314 12 54 526 21 506 8.02e-55 192
MS.gene84416.t1 AT3G05160 29.216 421 272 7 85 499 2 402 8.19e-55 190
MS.gene84416.t1 AT3G05160 29.216 421 272 7 85 499 2 402 8.19e-55 190
MS.gene84416.t1 AT4G04750 28.599 514 321 14 14 505 29 518 2.16e-53 189
MS.gene84416.t1 AT4G04750 29.025 472 300 12 45 505 27 474 4.18e-53 187
MS.gene84416.t1 AT4G04750 29.025 472 300 12 45 505 27 474 4.18e-53 187
MS.gene84416.t1 AT1G08900 30.404 421 271 8 83 499 11 413 1.59e-52 184
MS.gene84416.t1 AT1G08900 30.404 421 271 8 83 499 45 447 2.28e-52 184
MS.gene84416.t1 AT1G08900 30.404 421 271 8 83 499 53 455 3.03e-52 184
MS.gene84416.t1 AT1G08900 30.404 421 271 8 83 499 53 455 3.03e-52 184
MS.gene84416.t1 AT1G08890 29.677 465 295 11 45 499 15 457 2.16e-51 182
MS.gene84416.t1 AT4G04760 29.336 467 291 12 51 505 28 467 3.91e-51 182
MS.gene84416.t1 AT3G19940 27.629 485 302 10 54 505 24 492 6.40e-51 182
MS.gene84416.t1 AT1G77210 26.577 523 321 18 35 520 8 504 2.30e-50 180
MS.gene84416.t1 AT1G77210 26.577 523 321 18 35 520 8 504 2.30e-50 180
MS.gene84416.t1 AT1G50310 26.931 479 314 10 54 505 24 493 3.98e-50 180
MS.gene84416.t1 AT3G05960 27.364 497 327 10 54 526 20 506 5.23e-50 179
MS.gene84416.t1 AT5G26340 27.000 500 324 10 55 525 24 511 5.28e-50 180
MS.gene84416.t1 AT3G05400 28.390 472 299 12 45 504 17 461 3.62e-49 176
MS.gene84416.t1 AT1G30220 33.435 329 211 5 54 378 27 351 5.91e-49 178
MS.gene84416.t1 AT1G30220 45.833 96 52 0 410 505 464 559 1.39e-18 89.4
MS.gene84416.t1 AT1G08920 28.358 469 298 10 45 499 18 462 5.95e-49 176
MS.gene84416.t1 AT2G35740 32.353 340 211 7 54 382 25 356 2.69e-48 176
MS.gene84416.t1 AT2G35740 39.806 103 62 0 401 503 458 560 1.39e-17 86.3
MS.gene84416.t1 AT4G02050 25.407 492 327 9 41 505 13 491 5.69e-48 174
MS.gene84416.t1 AT4G02050 25.407 492 327 9 41 505 13 491 5.69e-48 174
MS.gene84416.t1 AT4G16480 31.714 350 216 6 54 390 26 365 7.48e-48 175
MS.gene84416.t1 AT4G16480 36.066 122 70 1 401 514 459 580 1.91e-17 85.9
MS.gene84416.t1 AT4G16480 31.714 350 216 6 54 390 26 365 7.48e-48 175
MS.gene84416.t1 AT4G16480 36.066 122 70 1 401 514 459 580 1.91e-17 85.9
MS.gene84416.t1 AT4G16480 31.714 350 216 6 54 390 26 365 7.48e-48 175
MS.gene84416.t1 AT4G16480 36.066 122 70 1 401 514 459 580 1.91e-17 85.9
MS.gene84416.t1 AT1G54730 28.132 423 257 9 83 499 60 441 1.00e-47 172
MS.gene84416.t1 AT3G05165 28.571 427 270 8 40 456 17 418 1.35e-47 173
MS.gene84416.t1 AT1G67300 29.331 508 314 14 15 500 3 487 3.93e-47 171
MS.gene84416.t1 AT1G67300 29.331 508 314 14 15 500 3 487 3.93e-47 171
MS.gene84416.t1 AT3G05165 27.765 425 278 7 31 445 2 407 4.01e-47 171
MS.gene84416.t1 AT3G05165 27.765 425 278 7 31 445 2 407 4.01e-47 171
MS.gene84416.t1 AT1G05030 30.159 441 295 8 62 500 86 515 4.32e-47 172
MS.gene84416.t1 AT1G08920 28.330 473 298 11 45 499 20 469 1.09e-46 170
MS.gene84416.t1 AT5G27360 31.081 370 233 9 134 499 10 361 1.38e-46 167
MS.gene84416.t1 AT5G27360 31.081 370 233 9 134 499 10 361 1.38e-46 167
MS.gene84416.t1 AT1G67300 29.273 509 314 14 15 500 3 488 1.73e-46 169
MS.gene84416.t1 AT1G54730 29.474 380 243 8 83 456 60 420 1.98e-46 168
MS.gene84416.t1 AT1G34580 26.978 493 311 13 51 509 21 498 1.45e-45 167
MS.gene84416.t1 AT3G19930 26.477 491 316 10 51 511 20 495 3.40e-45 166
MS.gene84416.t1 AT3G19930 26.477 491 316 10 51 511 20 495 3.40e-45 166
MS.gene84416.t1 AT5G23270 25.050 499 326 10 46 511 15 498 2.03e-44 164
MS.gene84416.t1 AT1G11260 24.600 500 332 11 54 517 22 512 2.08e-44 164
MS.gene84416.t1 AT5G17010 27.033 492 247 11 40 499 25 436 3.11e-44 162
MS.gene84416.t1 AT1G34580 27.660 423 279 9 101 509 39 448 4.86e-44 162
MS.gene84416.t1 AT3G05400 27.331 472 284 13 45 504 17 441 1.65e-43 160
MS.gene84416.t1 AT1G07340 27.389 471 303 10 55 498 23 481 2.43e-43 161
MS.gene84416.t1 AT1G05030 28.274 481 319 10 22 500 7 463 2.96e-42 157
MS.gene84416.t1 AT1G67300 29.345 443 268 14 20 440 8 427 3.64e-42 156
MS.gene84416.t1 AT1G67300 29.345 443 268 14 20 440 8 427 3.64e-42 156
MS.gene84416.t1 AT1G67300 29.241 448 272 14 15 440 3 427 6.27e-42 156
MS.gene84416.t1 AT1G67300 29.241 448 272 14 15 440 3 427 6.27e-42 156
MS.gene84416.t1 AT1G79820 29.274 468 296 12 45 500 44 488 1.65e-41 156
MS.gene84416.t1 AT1G79820 29.274 468 296 12 45 500 44 488 1.65e-41 156
MS.gene84416.t1 AT4G21480 26.446 484 309 13 54 505 22 490 3.66e-41 155
MS.gene84416.t1 AT5G27360 27.251 422 280 10 27 438 1 405 1.04e-40 152
MS.gene84416.t1 AT1G54730 29.261 352 224 8 83 428 60 392 1.39e-40 152
MS.gene84416.t1 AT1G54730 29.261 352 224 8 83 428 60 392 1.39e-40 152
MS.gene84416.t1 AT3G20460 25.917 436 297 8 70 499 68 483 3.05e-40 152
MS.gene84416.t1 AT1G08900 28.307 378 250 7 83 456 53 413 6.35e-39 147
MS.gene84416.t1 AT1G08920 27.123 424 274 9 45 456 20 420 2.88e-38 146
MS.gene84416.t1 AT1G54730 26.842 380 232 8 83 456 60 399 4.34e-37 142
MS.gene84416.t1 AT1G50310 27.378 347 236 8 166 505 13 350 9.69e-37 140
MS.gene84416.t1 AT2G48020 28.011 357 229 6 54 404 33 367 1.62e-36 140
MS.gene84416.t1 AT1G79820 28.814 413 265 10 45 448 44 436 2.36e-36 140
MS.gene84416.t1 AT5G61520 25.673 483 317 10 54 505 23 494 4.35e-36 141
MS.gene84416.t1 AT2G48020 27.964 329 215 4 54 382 33 339 1.25e-35 137
MS.gene84416.t1 AT3G05155 28.955 335 204 7 45 372 18 325 3.22e-35 135
MS.gene84416.t1 AT1G77210 27.224 371 229 14 167 520 9 355 4.44e-35 135
MS.gene84416.t1 AT3G51490 39.437 213 123 5 53 260 2 213 7.37e-35 139
MS.gene84416.t1 AT3G51490 29.004 231 139 5 284 502 495 712 2.80e-17 85.9
MS.gene84416.t1 AT3G51490 36.864 236 144 5 53 285 2 235 8.00e-35 139
MS.gene84416.t1 AT3G51490 32.035 231 140 5 284 502 495 720 6.27e-20 94.0
MS.gene84416.t1 AT1G54730 28.947 304 196 6 69 372 50 333 2.01e-34 133
MS.gene84416.t1 AT5G61520 26.098 410 288 6 101 505 47 446 2.65e-33 132
MS.gene84416.t1 AT1G54730 26.420 352 213 8 83 428 60 371 2.25e-31 125
MS.gene84416.t1 AT1G20840 36.449 214 124 5 59 266 8 215 6.87e-31 127
MS.gene84416.t1 AT1G20840 32.420 219 131 4 297 502 505 719 1.86e-20 95.9
MS.gene84416.t1 AT1G20840 36.449 214 124 5 59 266 8 215 6.87e-31 127
MS.gene84416.t1 AT1G20840 32.420 219 131 4 297 502 505 719 1.86e-20 95.9
MS.gene84416.t1 AT1G54730 27.757 263 178 3 83 345 60 310 2.10e-30 121
MS.gene84416.t1 AT1G54730 27.757 263 178 3 83 345 60 310 2.10e-30 121
MS.gene84416.t1 AT3G51490 39.080 174 103 3 113 285 14 185 6.45e-27 115
MS.gene84416.t1 AT3G51490 32.035 231 140 5 284 502 445 670 6.88e-20 94.0
MS.gene84416.t1 AT4G35300 38.308 201 116 6 66 260 15 213 1.10e-26 115
MS.gene84416.t1 AT4G35300 33.182 220 128 5 297 502 502 716 7.97e-24 106
MS.gene84416.t1 AT4G35300 38.308 201 116 6 66 260 15 213 1.10e-26 115
MS.gene84416.t1 AT4G35300 33.182 220 128 5 297 502 502 716 7.97e-24 106
MS.gene84416.t1 AT4G35300 38.308 201 116 6 66 260 15 213 1.10e-26 115
MS.gene84416.t1 AT4G35300 33.182 220 128 5 297 502 502 716 7.97e-24 106
MS.gene84416.t1 AT4G35300 38.308 201 116 6 66 260 15 213 1.12e-26 115
MS.gene84416.t1 AT4G35300 33.182 220 128 5 297 502 512 726 7.26e-24 106
MS.gene84416.t1 AT4G35300 38.308 201 116 6 66 260 15 213 1.12e-26 115
MS.gene84416.t1 AT4G35300 33.182 220 128 5 297 502 512 726 7.26e-24 106
MS.gene84416.t1 AT4G35300 38.308 201 116 6 66 260 15 213 1.12e-26 115
MS.gene84416.t1 AT4G35300 33.182 220 128 5 297 502 512 726 7.26e-24 106
MS.gene84416.t1 AT4G35300 38.308 201 116 6 66 260 15 213 1.12e-26 115
MS.gene84416.t1 AT4G35300 33.182 220 128 5 297 502 512 726 7.26e-24 106
MS.gene84416.t1 AT4G35300 38.308 201 116 6 66 260 15 213 1.12e-26 115
MS.gene84416.t1 AT4G35300 33.182 220 128 5 297 502 512 726 7.26e-24 106
MS.gene84416.t1 AT4G35300 38.308 201 116 6 66 260 15 213 1.12e-26 115
MS.gene84416.t1 AT4G35300 33.182 220 128 5 297 502 512 726 7.26e-24 106
MS.gene84416.t1 AT4G35300 38.308 201 116 6 66 260 15 213 1.12e-26 115
MS.gene84416.t1 AT4G35300 33.182 220 128 5 297 502 512 726 7.26e-24 106
MS.gene84416.t1 AT1G79820 26.068 468 263 13 45 500 44 440 1.22e-25 110
MS.gene84416.t1 AT4G35300 33.182 220 128 5 297 502 315 529 4.09e-24 106
MS.gene84416.t1 AT5G43350 22.538 457 295 14 104 509 76 524 4.77e-14 75.1
MS.gene84416.t1 AT5G43340 23.165 436 291 14 105 505 82 508 4.34e-13 72.0
MS.gene84416.t1 AT2G38940 21.973 446 286 12 105 499 81 515 1.38e-12 70.5
MS.gene84416.t1 AT3G54700 22.991 448 293 13 105 509 81 519 8.32e-12 68.2
MS.gene84416.t1 AT3G54700 22.991 448 293 13 105 509 81 519 8.32e-12 68.2
MS.gene84416.t1 AT1G16370 25.792 442 263 20 91 510 116 514 1.91e-11 67.0
MS.gene84416.t1 AT1G79820 37.748 151 80 5 357 500 235 378 6.45e-11 64.7

Find 119 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGCGGCCATTAAAATTTC+TGG 0.104258 4.1:+56003427 None:intergenic
ACTCTTTCATTATTTGAAAA+AGG 0.131055 4.1:-56003241 MS.gene84416:CDS
TTGGACTCGGCCCTGTTTGC+TGG 0.157878 4.1:-56003159 MS.gene84416:CDS
AACAAAGACCGTCTTTATTT+TGG 0.178346 4.1:-56003356 MS.gene84416:CDS
TGTATCTCTATTGGGTAGTT+TGG 0.222757 4.1:-56004094 MS.gene84416:CDS
AAGGCCGGAAAACGCGTAAT+TGG 0.248896 4.1:+56003804 None:intergenic
TCTCTCAACAATGTTCTTCT+TGG 0.260513 4.1:-56004448 MS.gene84416:CDS
GCTGGAATTGGAATAGGTTT+TGG 0.278916 4.1:-56003940 MS.gene84416:CDS
TTTGAGTATTGTATCTCTAT+TGG 0.289099 4.1:-56004103 MS.gene84416:CDS
CAGATATTATTGGTAGAAAA+TGG 0.294464 4.1:-56004056 MS.gene84416:CDS
TCTTATCTTCCAATTGTTGT+TGG 0.306828 4.1:+56004515 None:intergenic
AAGATGATGTTCCAAGAAAA+TGG 0.307041 4.1:-56004637 MS.gene84416:CDS
GACTGCTTGTTTGTTCTGTA+TGG 0.317788 4.1:-56003269 MS.gene84416:CDS
CTTCGCCGGATGCTGATTAC+TGG 0.318031 4.1:-56003508 MS.gene84416:CDS
GTATCTCTATTGGGTAGTTT+GGG 0.319309 4.1:-56004093 MS.gene84416:CDS
CTTCTCATTACTAGCACAAT+TGG 0.327974 4.1:-56003295 MS.gene84416:CDS
GTACTTGTTCTTTGTTCCTA+AGG 0.334633 4.1:+56004585 None:intergenic
GGAAGATTGTTAGCTGGAAT+TGG 0.335016 4.1:-56003952 MS.gene84416:CDS
CCGATCTTGCTTCGTCAATT+CGG 0.337686 4.1:+56003668 None:intergenic
AATGGGGAAATGGGTTTATC+AGG 0.344962 4.1:-56004613 MS.gene84416:CDS
TTGAGTATTGTATCTCTATT+GGG 0.346213 4.1:-56004102 MS.gene84416:CDS
TTGTTAGCTGGAATTGGAAT+AGG 0.355045 4.1:-56003946 MS.gene84416:CDS
AGAAAATGGTAATGGGGAAA+TGG 0.358662 4.1:-56004623 MS.gene84416:CDS
CAACTTGTGCAGAACAAAAC+TGG 0.362425 4.1:-56002845 MS.gene84416:CDS
TCATTGTAATTCCACCCATT+TGG 0.368460 4.1:+56004007 None:intergenic
TCTAAAGATAACTGAGGTTC+AGG 0.370786 4.1:-56004145 MS.gene84416:CDS
GTCCTCGTATTTACCAGAAT+TGG 0.372355 4.1:+56003570 None:intergenic
TACTTTATCAATAAGAATAA+TGG 0.372573 4.1:+56003330 None:intergenic
CTCCGCCACCGGCGCTTCGC+CGG 0.383124 4.1:-56003522 MS.gene84416:CDS
GTATCCAACGCAATTTCTTT+CGG 0.383566 4.1:-56003028 MS.gene84416:CDS
TGAGAATGAACATGGGAGTC+AGG 0.384972 4.1:-56002897 MS.gene84416:CDS
TGTTCCAAGAAAATGGTAAT+GGG 0.389476 4.1:-56004630 MS.gene84416:CDS
GGGCCATTAGTGATTGCATT+AGG 0.390751 4.1:-56003220 MS.gene84416:CDS
CACTCGGAGCTGTAGCGAAT+AGG 0.400992 4.1:-56003087 MS.gene84416:CDS
TGGACTCGGCCCTGTTTGCT+GGG 0.402706 4.1:-56003158 MS.gene84416:CDS
GATGTCAAAACCCAGCAAAC+AGG 0.402833 4.1:+56003148 None:intergenic
ATCATTAGTACTTGATATGA+AGG 0.422297 4.1:+56003976 None:intergenic
GAAAATGGTAATGGGGAAAT+GGG 0.424079 4.1:-56004622 MS.gene84416:CDS
ATACCTAATGCAATCACTAA+TGG 0.428309 4.1:+56003217 None:intergenic
GATATCTCAGCAATATATAT+AGG 0.430921 4.1:+56003904 None:intergenic
GGAAGAACATCAGATATTAT+TGG 0.433859 4.1:-56004066 MS.gene84416:CDS
TACTTGTTCTTTGTTCCTAA+GGG 0.434909 4.1:+56004586 None:intergenic
AACAATGTTCTTCTTGGCTA+TGG 0.435667 4.1:-56004442 MS.gene84416:intron
ACTGCTTGTTTGTTCTGTAT+GGG 0.446903 4.1:-56003268 MS.gene84416:CDS
ACACTAGTACCTGAAACAAA+AGG 0.446951 4.1:-56002950 MS.gene84416:CDS
GGCTGCAGTTGTATTCCAAA+TGG 0.451381 4.1:-56004022 MS.gene84416:CDS
CGGATGCTGATTACTGGTCT+TGG 0.455359 4.1:-56003502 MS.gene84416:CDS
GCCTGAGCACGCACTCGTAA+AGG 0.455930 4.1:+56003115 None:intergenic
GCCTTTCGGTACACATAAGT+TGG 0.456022 4.1:-56003786 MS.gene84416:CDS
AACAACAATTGGAAGATAAG+AGG 0.456265 4.1:-56004513 MS.gene84416:CDS
AGTGAGCCTCTAGTGAGATT+TGG 0.456475 4.1:+56003880 None:intergenic
ACTCGGAGCTGTAGCGAATA+GGG 0.461405 4.1:-56003086 MS.gene84416:CDS
CCCTTTACGAGTGCGTGCTC+AGG 0.461504 4.1:-56003116 MS.gene84416:CDS
TTCTCATTACTAGCACAATT+GGG 0.462959 4.1:-56003294 MS.gene84416:CDS
CGTGCTCAGGCATCTGCACT+CGG 0.465823 4.1:-56003103 MS.gene84416:CDS
TCATATCAAGTACTAATGAT+TGG 0.466636 4.1:-56003973 MS.gene84416:CDS
CCGAATTGACGAAGCAAGAT+CGG 0.470119 4.1:-56003668 MS.gene84416:CDS
ATGTTCCAAGAAAATGGTAA+TGG 0.470800 4.1:-56004631 MS.gene84416:CDS
AAGATAAGAGGAACAGTACT+AGG 0.471084 4.1:-56004501 MS.gene84416:CDS
ATTATTCTTATTGATAAAGT+AGG 0.477981 4.1:-56003328 MS.gene84416:CDS
ATCCGGCGAAGCGCCGGTGG+CGG 0.482961 4.1:+56003520 None:intergenic
CCTGAGCACGCACTCGTAAA+GGG 0.483401 4.1:+56003116 None:intergenic
GGTTTATCAGGAATTCCCTT+AGG 0.485952 4.1:-56004601 MS.gene84416:CDS
CTATTGGGTAGTTTGGGTGG+TGG 0.488972 4.1:-56004087 MS.gene84416:CDS
GAGGCTAGCAGAAATACAAC+AGG 0.497842 4.1:-56003605 MS.gene84416:CDS
ATCAGCATCCGGCGAAGCGC+CGG 0.504116 4.1:+56003514 None:intergenic
CACTAGTACCTGAAACAAAA+GGG 0.508537 4.1:-56002949 MS.gene84416:CDS
ATGAGAAAGAAGTGGAAGAG+AGG 0.523249 4.1:-56003624 MS.gene84416:CDS
CAAGACCAGTAATCAGCATC+CGG 0.526849 4.1:+56003503 None:intergenic
ATGATTGGAAGATTGTTAGC+TGG 0.528824 4.1:-56003958 MS.gene84416:CDS
ACTTATGTGTACCGAAAGGC+CGG 0.528846 4.1:+56003789 None:intergenic
ATAAATGTAGGAATTATGCT+TGG 0.533082 4.1:-56003835 MS.gene84416:CDS
CCAACGCAATTTCTTTCGGC+GGG 0.535097 4.1:-56003024 MS.gene84416:CDS
GACGGTCTTTGTTATACCTA+CGG 0.535206 4.1:+56003366 None:intergenic
CAGGGAAAAGAGATGGAGCT+AGG 0.539460 4.1:-56002878 MS.gene84416:CDS
TGAATTGCTCTCTCCGCCAC+CGG 0.546072 4.1:-56003533 MS.gene84416:CDS
GCTGCAGTTGTATTCCAAAT+GGG 0.552850 4.1:-56004021 MS.gene84416:CDS
AGCATCCGGCGAAGCGCCGG+TGG 0.553482 4.1:+56003517 None:intergenic
ACCAACCATCTCGGCGACTC+AGG 0.557547 4.1:+56003700 None:intergenic
TCTCTATTGGGTAGTTTGGG+TGG 0.559075 4.1:-56004090 MS.gene84416:CDS
GCAGAAATACAACAGGCTGC+TGG 0.560147 4.1:-56003598 MS.gene84416:CDS
AAACGAAGATGAGAAAGAAG+TGG 0.563366 4.1:-56003632 MS.gene84416:CDS
CAATTGTGCTAGTAATGAGA+AGG 0.568147 4.1:+56003296 None:intergenic
TCATTAGTACTTGATATGAA+GGG 0.569168 4.1:+56003977 None:intergenic
TCCTGAGTCGCCGAGATGGT+TGG 0.572336 4.1:-56003701 MS.gene84416:CDS
TGGGAGTCAGGGAAAAGAGA+TGG 0.575169 4.1:-56002885 MS.gene84416:CDS
GAGAATGAACATGGGAGTCA+GGG 0.577348 4.1:-56002896 MS.gene84416:CDS
TGGAGAGTAATGCTTGCTGT+TGG 0.577364 4.1:-56003766 MS.gene84416:CDS
GAACAAAGAACAAGTACAAG+AGG 0.581349 4.1:-56004579 MS.gene84416:CDS
ATGTCAAAACCCAGCAAACA+GGG 0.587235 4.1:+56003149 None:intergenic
TTCTGCATTACCAACCATCT+CGG 0.587579 4.1:+56003691 None:intergenic
AAATTGCGTTGGATACAGAC+AGG 0.590532 4.1:+56003035 None:intergenic
TAGAAAATGGACAATGGCAT+TGG 0.591364 4.1:-56004043 MS.gene84416:CDS
ACAGGAAAGACATGGCTACA+AGG 0.594862 4.1:+56003053 None:intergenic
AATTGTGCTAGTAATGAGAA+GGG 0.597166 4.1:+56003297 None:intergenic
GCAGATGTGGGTGTGATGAG+TGG 0.598876 4.1:-56004192 MS.gene84416:intron
TTATTCCTGAGTCGCCGAGA+TGG 0.599472 4.1:-56003705 MS.gene84416:CDS
AGAGAGCAATTCACGACACA+CGG 0.602420 4.1:+56003543 None:intergenic
CCCGCCGAAAGAAATTGCGT+TGG 0.604005 4.1:+56003024 None:intergenic
ATGATGTTTGAGAATGAACA+TGG 0.614564 4.1:-56002905 MS.gene84416:CDS
TCCAACGCAATTTCTTTCGG+CGG 0.616866 4.1:-56003025 MS.gene84416:CDS
CATTAGTACTTGATATGAAG+GGG 0.622524 4.1:+56003978 None:intergenic
GCAAAACCAATGAACACTGA+AGG 0.623428 4.1:+56003736 None:intergenic
TGATTTATCTTCAATTCCAG+CGG 0.623893 4.1:+56003411 None:intergenic
GTTCCAAGAAAATGGTAATG+GGG 0.628643 4.1:-56004629 MS.gene84416:CDS
AATGGCCACCAAAATAAAGA+CGG 0.634627 4.1:+56003348 None:intergenic
GCAGTTGTATTCCAAATGGG+TGG 0.636411 4.1:-56004018 MS.gene84416:CDS
TGCCAATTCTGGTAAATACG+AGG 0.640126 4.1:-56003572 MS.gene84416:CDS
ATATCACCAAATCTCACTAG+AGG 0.642480 4.1:-56003886 MS.gene84416:CDS
CTAGCTGCTACTGTTGCCGT+AGG 0.648188 4.1:-56003382 MS.gene84416:CDS
TATTGGTAGAAAATGGACAA+TGG 0.649056 4.1:-56004049 MS.gene84416:CDS
GAGAGCAATTCACGACACAC+GGG 0.649497 4.1:+56003544 None:intergenic
TAGTGTGAAAACAAAGACAA+TGG 0.657278 4.1:+56002967 None:intergenic
ATTGTGCTAGTAATGAGAAG+GGG 0.672038 4.1:+56003298 None:intergenic
TCCAACTTATGTGTACCGAA+AGG 0.681195 4.1:+56003785 None:intergenic
GTAGCGAATAGGGTTTGCAG+CGG 0.685373 4.1:-56003076 MS.gene84416:CDS
AGAAGATCTAAAGATAACTG+AGG 0.686492 4.1:-56004151 MS.gene84416:CDS
GGATACAGACAGGAAAGACA+TGG 0.687845 4.1:+56003045 None:intergenic
TGATGTTTGAGAATGAACAT+GGG 0.695121 4.1:-56002904 MS.gene84416:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTCTTATTGATAAAGT+AGG - chr4.1:56004138-56004157 MS.gene84416:CDS 15.0%
!! TACTTTATCAATAAGAATAA+TGG + chr4.1:56004139-56004158 None:intergenic 15.0%
!!! TTTTATTGAGATGATTTTTA+CGG - chr4.1:56003229-56003248 MS.gene84416:CDS 15.0%
!! ACTCTTTCATTATTTGAAAA+AGG - chr4.1:56004225-56004244 MS.gene84416:intron 20.0%
!! CTCTTTCATTATTTGAAAAA+GGG - chr4.1:56004226-56004245 MS.gene84416:intron 20.0%
!!! GTGTATGTGTTATTAATTAT+GGG - chr4.1:56003204-56003223 MS.gene84416:CDS 20.0%
!!! TGTGTATGTGTTATTAATTA+TGG - chr4.1:56003203-56003222 MS.gene84416:CDS 20.0%
!!! TTTATTGAGATGATTTTTAC+GGG - chr4.1:56003230-56003249 MS.gene84416:CDS 20.0%
! ATAAATGTAGGAATTATGCT+TGG - chr4.1:56003631-56003650 MS.gene84416:CDS 25.0%
! ATCATTAGTACTTGATATGA+AGG + chr4.1:56003493-56003512 None:intergenic 25.0%
! CAGATATTATTGGTAGAAAA+TGG - chr4.1:56003410-56003429 MS.gene84416:CDS 25.0%
! CCTACATTTATAAAAATCTC+TGG + chr4.1:56003622-56003641 None:intergenic 25.0%
! GATATCTCAGCAATATATAT+AGG + chr4.1:56003565-56003584 None:intergenic 25.0%
! TCATATCAAGTACTAATGAT+TGG - chr4.1:56003493-56003512 MS.gene84416:CDS 25.0%
! TCATTAGTACTTGATATGAA+GGG + chr4.1:56003492-56003511 None:intergenic 25.0%
!! CCAGAGATTTTTATAAATGT+AGG - chr4.1:56003619-56003638 MS.gene84416:CDS 25.0%
!! TTACAGTCCAGAAATTTTAA+TGG - chr4.1:56004032-56004051 MS.gene84416:CDS 25.0%
!! TTGAGTATTGTATCTCTATT+GGG - chr4.1:56003364-56003383 MS.gene84416:CDS 25.0%
!! TTTGAGTATTGTATCTCTAT+TGG - chr4.1:56003363-56003382 MS.gene84416:CDS 25.0%
!!! TGGAAATGTAGCATTTTTTT+CGG - chr4.1:56004284-56004303 MS.gene84416:intron 25.0%
AACAACAATTGGAAGATAAG+AGG - chr4.1:56002953-56002972 MS.gene84416:CDS 30.0%
AATTGTGCTAGTAATGAGAA+GGG + chr4.1:56004172-56004191 None:intergenic 30.0%
AGAAGATCTAAAGATAACTG+AGG - chr4.1:56003315-56003334 MS.gene84416:CDS 30.0%
ATACCTAATGCAATCACTAA+TGG + chr4.1:56004252-56004271 None:intergenic 30.0%
ATGATGTTTGAGAATGAACA+TGG - chr4.1:56004561-56004580 MS.gene84416:CDS 30.0%
ATGTTCCAAGAAAATGGTAA+TGG - chr4.1:56002835-56002854 MS.gene84416:CDS 30.0%
CATTAGTACTTGATATGAAG+GGG + chr4.1:56003491-56003510 None:intergenic 30.0%
GGAAGAACATCAGATATTAT+TGG - chr4.1:56003400-56003419 MS.gene84416:CDS 30.0%
TACTTGTTCTTTGTTCCTAA+GGG + chr4.1:56002883-56002902 None:intergenic 30.0%
TAGTGTGAAAACAAAGACAA+TGG + chr4.1:56004502-56004521 None:intergenic 30.0%
TATTGGTAGAAAATGGACAA+TGG - chr4.1:56003417-56003436 MS.gene84416:CDS 30.0%
TCTTATCTTCCAATTGTTGT+TGG + chr4.1:56002954-56002973 None:intergenic 30.0%
TGATGTTTGAGAATGAACAT+GGG - chr4.1:56004562-56004581 MS.gene84416:CDS 30.0%
TGATTTATCTTCAATTCCAG+CGG + chr4.1:56004058-56004077 None:intergenic 30.0%
TGTTCCAAGAAAATGGTAAT+GGG - chr4.1:56002836-56002855 MS.gene84416:CDS 30.0%
TTCTCATTACTAGCACAATT+GGG - chr4.1:56004172-56004191 MS.gene84416:CDS 30.0%
! TTAGGTATTCTTTTTGTCTG+TGG - chr4.1:56004264-56004283 MS.gene84416:intron 30.0%
! TTGTGAATTTTTGCAGATGT+GGG - chr4.1:56003262-56003281 MS.gene84416:CDS 30.0%
! TTTGTGAATTTTTGCAGATG+TGG - chr4.1:56003261-56003280 MS.gene84416:CDS 30.0%
!! AACAAAGACCGTCTTTATTT+TGG - chr4.1:56004110-56004129 MS.gene84416:CDS 30.0%
!! GTTCAGGTAGAAATTTTGAT+TGG - chr4.1:56003337-56003356 MS.gene84416:CDS 30.0%
!!! AATGTAGCATTTTTTTCGGT+TGG - chr4.1:56004288-56004307 MS.gene84416:intron 30.0%
AAACGAAGATGAGAAAGAAG+TGG - chr4.1:56003834-56003853 MS.gene84416:CDS 35.0%
AACAATGTTCTTCTTGGCTA+TGG - chr4.1:56003024-56003043 MS.gene84416:CDS 35.0%
AAGATAAGAGGAACAGTACT+AGG - chr4.1:56002965-56002984 MS.gene84416:CDS 35.0%
AATGGCCACCAAAATAAAGA+CGG + chr4.1:56004121-56004140 None:intergenic 35.0%
ACACTAGTACCTGAAACAAA+AGG - chr4.1:56004516-56004535 MS.gene84416:CDS 35.0%
ACTGCTTGTTTGTTCTGTAT+GGG - chr4.1:56004198-56004217 MS.gene84416:intron 35.0%
ATATCACCAAATCTCACTAG+AGG - chr4.1:56003580-56003599 MS.gene84416:CDS 35.0%
ATGATTGGAAGATTGTTAGC+TGG - chr4.1:56003508-56003527 MS.gene84416:CDS 35.0%
ATTGTGCTAGTAATGAGAAG+GGG + chr4.1:56004171-56004190 None:intergenic 35.0%
CAATTGTGCTAGTAATGAGA+AGG + chr4.1:56004173-56004192 None:intergenic 35.0%
CACTAGTACCTGAAACAAAA+GGG - chr4.1:56004517-56004536 MS.gene84416:CDS 35.0%
CTTCTCATTACTAGCACAAT+TGG - chr4.1:56004171-56004190 MS.gene84416:CDS 35.0%
GAACAAAGAACAAGTACAAG+AGG - chr4.1:56002887-56002906 MS.gene84416:CDS 35.0%
GTACTTGTTCTTTGTTCCTA+AGG + chr4.1:56002884-56002903 None:intergenic 35.0%
GTATCCAACGCAATTTCTTT+CGG - chr4.1:56004438-56004457 MS.gene84416:intron 35.0%
GTATCTCTATTGGGTAGTTT+GGG - chr4.1:56003373-56003392 MS.gene84416:CDS 35.0%
TAGAAAATGGACAATGGCAT+TGG - chr4.1:56003423-56003442 MS.gene84416:CDS 35.0%
TCATTGTAATTCCACCCATT+TGG + chr4.1:56003462-56003481 None:intergenic 35.0%
TCTAAAGATAACTGAGGTTC+AGG - chr4.1:56003321-56003340 MS.gene84416:CDS 35.0%
TCTCTCAACAATGTTCTTCT+TGG - chr4.1:56003018-56003037 MS.gene84416:CDS 35.0%
TGTATCTCTATTGGGTAGTT+TGG - chr4.1:56003372-56003391 MS.gene84416:CDS 35.0%
TTGTTAGCTGGAATTGGAAT+AGG - chr4.1:56003520-56003539 MS.gene84416:CDS 35.0%
! ATTTTGCCTTCAGTGTTCAT+TGG - chr4.1:56003724-56003743 MS.gene84416:CDS 35.0%
! CAGTGTTTTCAACAAATCTC+TGG - chr4.1:56003991-56004010 MS.gene84416:CDS 35.0%
! GTTCCAAGAAAATGGTAATG+GGG - chr4.1:56002837-56002856 MS.gene84416:CDS 35.0%
! TGTTTTGCACCAACAACAAT+TGG - chr4.1:56002942-56002961 MS.gene84416:CDS 35.0%
! TTTCCCCATTACCATTTTCT+TGG + chr4.1:56002843-56002862 None:intergenic 35.0%
!! AATGACTTCCCTTTTGTTTC+AGG + chr4.1:56004528-56004547 None:intergenic 35.0%
!! AGAAAATGGTAATGGGGAAA+TGG - chr4.1:56002843-56002862 MS.gene84416:CDS 35.0%
!! GAAAATGGTAATGGGGAAAT+GGG - chr4.1:56002844-56002863 MS.gene84416:CDS 35.0%
!!! AAAGACCGTCTTTATTTTGG+TGG - chr4.1:56004113-56004132 MS.gene84416:CDS 35.0%
AAATTGCGTTGGATACAGAC+AGG + chr4.1:56004434-56004453 None:intergenic 40.0%
ATGAGAAAGAAGTGGAAGAG+AGG - chr4.1:56003842-56003861 MS.gene84416:CDS 40.0%
ATGTCAAAACCCAGCAAACA+GGG + chr4.1:56004320-56004339 None:intergenic 40.0%
CAACTTGTGCAGAACAAAAC+TGG - chr4.1:56004621-56004640 MS.gene84416:CDS 40.0%
GACTGCTTGTTTGTTCTGTA+TGG - chr4.1:56004197-56004216 MS.gene84416:intron 40.0%
GCAAAACCAATGAACACTGA+AGG + chr4.1:56003733-56003752 None:intergenic 40.0%
GCTGCAGTTGTATTCCAAAT+GGG - chr4.1:56003445-56003464 MS.gene84416:CDS 40.0%
GGAAGATTGTTAGCTGGAAT+TGG - chr4.1:56003514-56003533 MS.gene84416:CDS 40.0%
GGTTTATCAGGAATTCCCTT+AGG - chr4.1:56002865-56002884 MS.gene84416:CDS 40.0%
GTCCTCGTATTTACCAGAAT+TGG + chr4.1:56003899-56003918 None:intergenic 40.0%
TCCAACTTATGTGTACCGAA+AGG + chr4.1:56003684-56003703 None:intergenic 40.0%
TGCCAATTCTGGTAAATACG+AGG - chr4.1:56003894-56003913 MS.gene84416:CDS 40.0%
TTCTGCATTACCAACCATCT+CGG + chr4.1:56003778-56003797 None:intergenic 40.0%
! AATGGGGAAATGGGTTTATC+AGG - chr4.1:56002853-56002872 MS.gene84416:CDS 40.0%
! GACGGTCTTTGTTATACCTA+CGG + chr4.1:56004103-56004122 None:intergenic 40.0%
! GCTGGAATTGGAATAGGTTT+TGG - chr4.1:56003526-56003545 MS.gene84416:CDS 40.0%
! GTATCCAATTACGCGTTTTC+CGG - chr4.1:56003658-56003677 MS.gene84416:CDS 40.0%
!!! GCATTTTTTTCGGTTGGACT+CGG - chr4.1:56004294-56004313 MS.gene84416:intron 40.0%
ACAGGAAAGACATGGCTACA+AGG + chr4.1:56004416-56004435 None:intergenic 45.0%
ACTTATGTGTACCGAAAGGC+CGG + chr4.1:56003680-56003699 None:intergenic 45.0%
AGAGAGCAATTCACGACACA+CGG + chr4.1:56003926-56003945 None:intergenic 45.0%
AGTGAGCCTCTAGTGAGATT+TGG + chr4.1:56003589-56003608 None:intergenic 45.0%
CAAGACCAGTAATCAGCATC+CGG + chr4.1:56003966-56003985 None:intergenic 45.0%
CCAGCGGCCATTAAAATTTC+TGG + chr4.1:56004042-56004061 None:intergenic 45.0%
CCGAATTGACGAAGCAAGAT+CGG - chr4.1:56003798-56003817 MS.gene84416:CDS 45.0%
CCGATCTTGCTTCGTCAATT+CGG + chr4.1:56003801-56003820 None:intergenic 45.0%
GAGAATGAACATGGGAGTCA+GGG - chr4.1:56004570-56004589 MS.gene84416:CDS 45.0%
GAGGCTAGCAGAAATACAAC+AGG - chr4.1:56003861-56003880 MS.gene84416:CDS 45.0%
GATGTCAAAACCCAGCAAAC+AGG + chr4.1:56004321-56004340 None:intergenic 45.0%
GCAGTTGTATTCCAAATGGG+TGG - chr4.1:56003448-56003467 MS.gene84416:CDS 45.0%
GCCTTTCGGTACACATAAGT+TGG - chr4.1:56003680-56003699 MS.gene84416:CDS 45.0%
GGATACAGACAGGAAAGACA+TGG + chr4.1:56004424-56004443 None:intergenic 45.0%
GGCTGCAGTTGTATTCCAAA+TGG - chr4.1:56003444-56003463 MS.gene84416:CDS 45.0%
GGGCCATTAGTGATTGCATT+AGG - chr4.1:56004246-56004265 MS.gene84416:intron 45.0%
TCCAACGCAATTTCTTTCGG+CGG - chr4.1:56004441-56004460 MS.gene84416:intron 45.0%
TCTCTATTGGGTAGTTTGGG+TGG - chr4.1:56003376-56003395 MS.gene84416:CDS 45.0%
TGAGAATGAACATGGGAGTC+AGG - chr4.1:56004569-56004588 MS.gene84416:CDS 45.0%
!! CCAGAAATTTTAATGGCCGC+TGG - chr4.1:56004039-56004058 MS.gene84416:CDS 45.0%
!! TGGAGAGTAATGCTTGCTGT+TGG - chr4.1:56003700-56003719 MS.gene84416:CDS 45.0%
AAGGCCGGAAAACGCGTAAT+TGG + chr4.1:56003665-56003684 None:intergenic 50.0%
ACTCGGAGCTGTAGCGAATA+GGG - chr4.1:56004380-56004399 MS.gene84416:intron 50.0%
CAGGGAAAAGAGATGGAGCT+AGG - chr4.1:56004588-56004607 MS.gene84416:CDS 50.0%
CCAACGCAATTTCTTTCGGC+GGG - chr4.1:56004442-56004461 MS.gene84416:intron 50.0%
CTATTGGGTAGTTTGGGTGG+TGG - chr4.1:56003379-56003398 MS.gene84416:CDS 50.0%
GAGAGCAATTCACGACACAC+GGG + chr4.1:56003925-56003944 None:intergenic 50.0%
GCAGAAATACAACAGGCTGC+TGG - chr4.1:56003868-56003887 MS.gene84416:CDS 50.0%
GTAGCGAATAGGGTTTGCAG+CGG - chr4.1:56004390-56004409 MS.gene84416:intron 50.0%
TGGGAGTCAGGGAAAAGAGA+TGG - chr4.1:56004581-56004600 MS.gene84416:CDS 50.0%
TTATTCCTGAGTCGCCGAGA+TGG - chr4.1:56003761-56003780 MS.gene84416:CDS 50.0%
! CGGATGCTGATTACTGGTCT+TGG - chr4.1:56003964-56003983 MS.gene84416:CDS 50.0%
! TTACGCGTTTTCCGGCCTTT+CGG - chr4.1:56003666-56003685 MS.gene84416:CDS 50.0%
!!! GCTGCTGGTTTTGCCAATTC+TGG - chr4.1:56003883-56003902 MS.gene84416:CDS 50.0%
CACTCGGAGCTGTAGCGAAT+AGG - chr4.1:56004379-56004398 MS.gene84416:intron 55.0%
CCCGCCGAAAGAAATTGCGT+TGG + chr4.1:56004445-56004464 None:intergenic 55.0%
CCTGAGCACGCACTCGTAAA+GGG + chr4.1:56004353-56004372 None:intergenic 55.0%
CTAGCTGCTACTGTTGCCGT+AGG - chr4.1:56004084-56004103 MS.gene84416:CDS 55.0%
GCAGATGTGGGTGTGATGAG+TGG - chr4.1:56003274-56003293 MS.gene84416:CDS 55.0%
TGAATTGCTCTCTCCGCCAC+CGG - chr4.1:56003933-56003952 MS.gene84416:CDS 55.0%
! CTTCGCCGGATGCTGATTAC+TGG - chr4.1:56003958-56003977 MS.gene84416:CDS 55.0%
ACCAACCATCTCGGCGACTC+AGG + chr4.1:56003769-56003788 None:intergenic 60.0%
CCCTTTACGAGTGCGTGCTC+AGG - chr4.1:56004350-56004369 MS.gene84416:intron 60.0%
CGTGCTCAGGCATCTGCACT+CGG - chr4.1:56004363-56004382 MS.gene84416:intron 60.0%
GCCTGAGCACGCACTCGTAA+AGG + chr4.1:56004354-56004373 None:intergenic 60.0%
TCCTGAGTCGCCGAGATGGT+TGG - chr4.1:56003765-56003784 MS.gene84416:CDS 60.0%
TGGACTCGGCCCTGTTTGCT+GGG - chr4.1:56004308-56004327 MS.gene84416:intron 60.0%
TTGGACTCGGCCCTGTTTGC+TGG - chr4.1:56004307-56004326 MS.gene84416:intron 60.0%
ATCAGCATCCGGCGAAGCGC+CGG + chr4.1:56003955-56003974 None:intergenic 65.0%
!! AGCATCCGGCGAAGCGCCGG+TGG + chr4.1:56003952-56003971 None:intergenic 75.0%
!! ATCCGGCGAAGCGCCGGTGG+CGG + chr4.1:56003949-56003968 None:intergenic 75.0%
! CTCCGCCACCGGCGCTTCGC+CGG - chr4.1:56003944-56003963 MS.gene84416:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 56002832 56004656 56002832 ID=MS.gene84416
chr4.1 mRNA 56002832 56004656 56002832 ID=MS.gene84416.t1;Parent=MS.gene84416
chr4.1 exon 56004443 56004656 56004443 ID=MS.gene84416.t1.exon1;Parent=MS.gene84416.t1
chr4.1 CDS 56004443 56004656 56004443 ID=cds.MS.gene84416.t1;Parent=MS.gene84416.t1
chr4.1 exon 56002832 56004210 56002832 ID=MS.gene84416.t1.exon2;Parent=MS.gene84416.t1
chr4.1 CDS 56002832 56004210 56002832 ID=cds.MS.gene84416.t1;Parent=MS.gene84416.t1
Gene Sequence

>MS.gene84416

ATGATGTTCCAAGAAAATGGTAATGGGGAAATGGGTTTATCAGGAATTCCCTTAGGAACAAAGAACAAGTACAAGAGGATGAATTCACAGCTTGTTGATGATAATGATGATGTTTTGCACCAACAACAATTGGAAGATAAGAGGAACAGTACTAGGAAATATGTTATTGCTTGTGCTATATTTGCTTCTCTCAACAATGTTCTTCTTGGCTATGGTATGCTTTCTTTGAAAAGTCTTTGACTTTGTTGATTTTTTGCGTTGACTTTGATTCTAATTAGATTGTTCTTGATGATCTACAATGATTTTGATTCATTTTTGCATTTCTAGTAGCTAAGATAATAACAGATCTAAAATAATAATTCATCATCAATTGTGTATGTGTTATTAATTATGGGAGTTTTATTGAGATGATTTTTACGGGATTTTTGTTTTGTGAATTTTTGCAGATGTGGGTGTGATGAGTGGTGCAGTTATATTTATCAAAGAAGATCTAAAGATAACTGAGGTTCAGGTAGAAATTTTGATTGGTATTTTGAGTATTGTATCTCTATTGGGTAGTTTGGGTGGTGGAAGAACATCAGATATTATTGGTAGAAAATGGACAATGGCATTGGCTGCAGTTGTATTCCAAATGGGTGGAATTACAATGACTCTTGCCCCTTCATATCAAGTACTAATGATTGGAAGATTGTTAGCTGGAATTGGAATAGGTTTTGGAGTTATGATTTCACCTATATATATTGCTGAGATATCACCAAATCTCACTAGAGGCTCACTTACTACTTTTCCAGAGATTTTTATAAATGTAGGAATTATGCTTGGTTATGTATCCAATTACGCGTTTTCCGGCCTTTCGGTACACATAAGTTGGAGAGTAATGCTTGCTGTTGGAATTTTGCCTTCAGTGTTCATTGGTTTTGCTCTTTTCATTATTCCTGAGTCGCCGAGATGGTTGGTAATGCAGAACCGAATTGACGAAGCAAGATCGGTGCTGTTGAAAACAAACGAAGATGAGAAAGAAGTGGAAGAGAGGCTAGCAGAAATACAACAGGCTGCTGGTTTTGCCAATTCTGGTAAATACGAGGACAAACCCGTGTGTCGTGAATTGCTCTCTCCGCCACCGGCGCTTCGCCGGATGCTGATTACTGGTCTTGGAATTCAGTGTTTTCAACAAATCTCTGGAATTGATGCAACTGTGTATTACAGTCCAGAAATTTTAATGGCCGCTGGAATTGAAGATAAATCAAAACTTCTAGCTGCTACTGTTGCCGTAGGTATAACAAAGACCGTCTTTATTTTGGTGGCCATTATTCTTATTGATAAAGTAGGTAGAAAACCCCTTCTCATTACTAGCACAATTGGGATGACTGCTTGTTTGTTCTGTATGGGAATTACTCTTTCATTATTTGAAAAAGGGCCATTAGTGATTGCATTAGGTATTCTTTTTGTCTGTGGAAATGTAGCATTTTTTTCGGTTGGACTCGGCCCTGTTTGCTGGGTTTTGACATCTGAAATCTTCCCTTTACGAGTGCGTGCTCAGGCATCTGCACTCGGAGCTGTAGCGAATAGGGTTTGCAGCGGCCTTGTAGCCATGTCTTTCCTGTCTGTATCCAACGCAATTTCTTTCGGCGGGACATTCTTTCTGTTTTCTGCTATTTCTGCTCTTGCCATTGTCTTTGTTTTCACACTAGTACCTGAAACAAAAGGGAAGTCATTAGAACAAATTGAGATGATGTTTGAGAATGAACATGGGAGTCAGGGAAAAGAGATGGAGCTAGGTGATGTTGAACAACTTGTGCAGAACAAAACTGGTTTAACAAATTAG

Protein sequence

>MS.gene84416.t1

MMFQENGNGEMGLSGIPLGTKNKYKRMNSQLVDDNDDVLHQQQLEDKRNSTRKYVIACAIFASLNNVLLGYDVGVMSGAVIFIKEDLKITEVQVEILIGILSIVSLLGSLGGGRTSDIIGRKWTMALAAVVFQMGGITMTLAPSYQVLMIGRLLAGIGIGFGVMISPIYIAEISPNLTRGSLTTFPEIFINVGIMLGYVSNYAFSGLSVHISWRVMLAVGILPSVFIGFALFIIPESPRWLVMQNRIDEARSVLLKTNEDEKEVEERLAEIQQAAGFANSGKYEDKPVCRELLSPPPALRRMLITGLGIQCFQQISGIDATVYYSPEILMAAGIEDKSKLLAATVAVGITKTVFILVAIILIDKVGRKPLLITSTIGMTACLFCMGITLSLFEKGPLVIALGILFVCGNVAFFSVGLGPVCWVLTSEIFPLRVRAQASALGAVANRVCSGLVAMSFLSVSNAISFGGTFFLFSAISALAIVFVFTLVPETKGKSLEQIEMMFENEHGSQGKEMELGDVEQLVQNKTGLTN