Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032837.t1 | RHN55325.1 | 98.9 | 182 | 2 | 0 | 1 | 182 | 58 | 239 | 1.40E-97 | 365.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032837.t1 | Q9S784 | 62.5 | 184 | 55 | 4 | 6 | 182 | 8 | 184 | 2.2e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032837.t1 | G7KCI8 | 98.9 | 182 | 2 | 0 | 1 | 182 | 1 | 182 | 1.0e-97 | 365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017137 | MS.gene032837 | PPI |
| MS.gene062344 | MS.gene032837 | PPI |
| MS.gene045787 | MS.gene032837 | PPI |
| MS.gene030064 | MS.gene032837 | PPI |
| MS.gene81030 | MS.gene032837 | PPI |
| MS.gene72395 | MS.gene032837 | PPI |
| MS.gene72394 | MS.gene032837 | PPI |
| MS.gene038370 | MS.gene032837 | PPI |
| MS.gene83241 | MS.gene032837 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032837.t1 | MTR_5g039530 | 98.901 | 182 | 2 | 0 | 1 | 182 | 1 | 182 | 2.22e-134 | 373 |
| MS.gene032837.t1 | MTR_4g108350 | 61.494 | 174 | 55 | 3 | 8 | 180 | 11 | 173 | 3.73e-75 | 223 |
| MS.gene032837.t1 | MTR_4g108350 | 58.046 | 174 | 52 | 4 | 8 | 180 | 11 | 164 | 1.11e-66 | 201 |
| MS.gene032837.t1 | MTR_3g452470 | 43.396 | 159 | 85 | 1 | 8 | 166 | 3 | 156 | 1.00e-40 | 135 |
| MS.gene032837.t1 | MTR_5g091800 | 44.172 | 163 | 79 | 2 | 7 | 166 | 2 | 155 | 7.78e-40 | 133 |
| MS.gene032837.t1 | MTR_8g096670 | 47.619 | 105 | 52 | 1 | 9 | 110 | 4 | 108 | 2.08e-29 | 105 |
| MS.gene032837.t1 | MTR_8g096670 | 52.174 | 92 | 41 | 1 | 22 | 110 | 7 | 98 | 1.76e-28 | 102 |
| MS.gene032837.t1 | MTR_3g099010 | 50.526 | 95 | 47 | 0 | 9 | 103 | 4 | 98 | 2.12e-27 | 101 |
| MS.gene032837.t1 | MTR_4g093260 | 41.722 | 151 | 78 | 3 | 8 | 158 | 6 | 146 | 1.23e-26 | 105 |
| MS.gene032837.t1 | MTR_4g093510 | 41.429 | 140 | 72 | 3 | 19 | 158 | 17 | 146 | 7.22e-26 | 103 |
| MS.gene032837.t1 | MTR_4g093270 | 38.889 | 144 | 78 | 3 | 19 | 162 | 14 | 147 | 1.88e-25 | 100 |
| MS.gene032837.t1 | MTR_4g093280 | 35.429 | 175 | 98 | 4 | 8 | 179 | 6 | 168 | 1.44e-23 | 96.7 |
| MS.gene032837.t1 | MTR_4g093260 | 41.221 | 131 | 67 | 3 | 32 | 162 | 21 | 141 | 1.77e-23 | 97.1 |
| MS.gene032837.t1 | MTR_5g019720 | 34.066 | 91 | 60 | 0 | 20 | 110 | 32 | 122 | 1.77e-12 | 63.2 |
| MS.gene032837.t1 | MTR_5g019720 | 34.483 | 87 | 57 | 0 | 24 | 110 | 36 | 122 | 4.04e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032837.t1 | AT1G69700 | 61.170 | 188 | 59 | 4 | 2 | 182 | 4 | 184 | 1.41e-79 | 234 |
| MS.gene032837.t1 | AT1G74520 | 55.556 | 171 | 66 | 2 | 1 | 170 | 1 | 162 | 9.72e-69 | 207 |
| MS.gene032837.t1 | AT1G74520 | 55.556 | 171 | 66 | 2 | 1 | 170 | 1 | 162 | 9.72e-69 | 207 |
| MS.gene032837.t1 | AT5G62490 | 45.355 | 183 | 83 | 4 | 1 | 182 | 1 | 167 | 7.38e-50 | 159 |
| MS.gene032837.t1 | AT2G42820 | 38.509 | 161 | 92 | 2 | 7 | 166 | 2 | 156 | 1.73e-36 | 124 |
| MS.gene032837.t1 | AT5G50720 | 56.471 | 85 | 37 | 0 | 19 | 103 | 14 | 98 | 1.81e-27 | 100 |
| MS.gene032837.t1 | AT4G24960 | 51.190 | 84 | 41 | 0 | 20 | 103 | 15 | 98 | 2.16e-25 | 95.5 |
| MS.gene032837.t1 | AT4G24960 | 51.282 | 78 | 38 | 0 | 26 | 103 | 2 | 79 | 1.15e-23 | 91.3 |
| MS.gene032837.t1 | AT4G24960 | 47.761 | 67 | 35 | 0 | 37 | 103 | 1 | 67 | 8.78e-18 | 75.1 |
| MS.gene032837.t1 | AT4G36720 | 28.571 | 112 | 79 | 1 | 20 | 130 | 40 | 151 | 4.84e-11 | 59.3 |
Find 34 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAACAATGGCTCACTTAT+TGG | 0.141168 | 5.4:-29288782 | MS.gene032837:CDS |
| TTGGTTCTTCCTCACTTTAA+TGG | 0.200883 | 5.4:-29286376 | MS.gene032837:CDS |
| AACTTTGCATAAGGCCAAAT+TGG | 0.249813 | 5.4:+29286415 | None:intergenic |
| AACAATATTCTTGGTCTCTA+TGG | 0.262576 | 5.4:+29288809 | None:intergenic |
| CTGCCAAACATGGGTGCTTC+TGG | 0.275435 | 5.4:-29289115 | None:intergenic |
| TTGGTCATCAACAATATTCT+TGG | 0.292453 | 5.4:+29288800 | None:intergenic |
| GAGAGGTACATGCAAGAAAA+TGG | 0.319550 | 5.4:-29286205 | MS.gene032837:CDS |
| CCAACAATGGCTCACTTATT+GGG | 0.324995 | 5.4:-29288781 | MS.gene032837:CDS |
| TACCACATTTGCGAAGTTCC+TGG | 0.390647 | 5.4:+29286280 | None:intergenic |
| AACTTACACTTCAAGAACTT+TGG | 0.394572 | 5.4:+29288719 | None:intergenic |
| CAAAGTTGATACTGAGTTGT+TGG | 0.408295 | 5.4:-29286399 | MS.gene032837:CDS |
| GCGGCATTTGTGGTAATTGT+GGG | 0.420764 | 5.4:+29286308 | None:intergenic |
| CCCAATAAGTGAGCCATTGT+TGG | 0.422265 | 5.4:+29288781 | None:intergenic |
| CCTGGCATTAGCGGCATTTG+TGG | 0.433095 | 5.4:+29286298 | None:intergenic |
| AGCGGCATTTGTGGTAATTG+TGG | 0.440775 | 5.4:+29286307 | None:intergenic |
| CTCAGTATCAACTTTGCATA+AGG | 0.465176 | 5.4:+29286406 | None:intergenic |
| GAATCTAAAGCAAGGAGGAA+TGG | 0.484072 | 5.4:-29285955 | MS.gene032837:CDS |
| CCACAAATGCCGCTAATGCC+AGG | 0.511549 | 5.4:-29286298 | MS.gene032837:CDS |
| TGTCAGATATGCTTCAATCA+AGG | 0.516461 | 5.4:-29288832 | MS.gene032837:intron |
| TGCGAAGTTCCTGGCATTAG+CGG | 0.524899 | 5.4:+29286289 | None:intergenic |
| CGCAAATGTGGTATGTTCCA+CGG | 0.554204 | 5.4:-29286270 | MS.gene032837:CDS |
| TGCCAGGAACTTCGCAAATG+TGG | 0.559503 | 5.4:-29286282 | MS.gene032837:CDS |
| AATTGTGGGTTCATGTAGAA+TGG | 0.566744 | 5.4:+29286322 | None:intergenic |
| GTTGATACTGAGTTGTTGGT+TGG | 0.567156 | 5.4:-29286395 | MS.gene032837:CDS |
| TTACTGAATATGTTCTTCCG+TGG | 0.635410 | 5.4:+29286253 | None:intergenic |
| ATACTTACAAAGGATAAACA+AGG | 0.644880 | 5.4:+29288932 | None:intergenic |
| ATATTGTTGATGACCAACAA+TGG | 0.658273 | 5.4:-29288794 | MS.gene032837:CDS |
| GGATAAACAAGGGTTACCAA+AGG | 0.666185 | 5.4:+29288943 | None:intergenic |
| CTGACAGAGAATCTAAAGCA+AGG | 0.668145 | 5.4:-29285963 | MS.gene032837:CDS |
| TGTGCTGCTCCATTAAAGTG+AGG | 0.689754 | 5.4:+29286367 | None:intergenic |
| TACTTACAAAGGATAAACAA+GGG | 0.713530 | 5.4:+29288933 | None:intergenic |
| ATTTGAAAGACTCATCACAA+AGG | 0.722475 | 5.4:-29286173 | MS.gene032837:intron |
| ATGTTCTTAGTGCTGCAGAG+AGG | 0.731265 | 5.4:-29286222 | MS.gene032837:CDS |
| ACAGAGAATCTAAAGCAAGG+AGG | 0.733583 | 5.4:-29285960 | MS.gene032837:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAGTAATTTAAACTT+CGG | + | chr5.4:29288929-29288948 | None:intergenic | 10.0% |
| !!! | TTAAAAAAATAGAATTTTCA+AGG | - | chr5.4:29287045-29287064 | MS.gene032837:intron | 10.0% |
| !! | AAATTATAACATACTTACAA+AGG | + | chr5.4:29286105-29286124 | None:intergenic | 15.0% |
| !! | ATGAATTAAAAATGTGATAA+TGG | + | chr5.4:29287672-29287691 | None:intergenic | 15.0% |
| !! | ATTACTAAATTTGAAAAACT+AGG | - | chr5.4:29288937-29288956 | MS.gene032837:intron | 15.0% |
| !! | TGAATTAAAAATGTGATAAT+GGG | + | chr5.4:29287671-29287690 | None:intergenic | 15.0% |
| !!! | ACTTTTCACTATATAAAAAA+AGG | + | chr5.4:29286754-29286773 | None:intergenic | 15.0% |
| !!! | ATCAAATGATTTTATGATAT+TGG | + | chr5.4:29287546-29287565 | None:intergenic | 15.0% |
| !!! | ATTATCACATTTTTAATTCA+TGG | - | chr5.4:29287671-29287690 | MS.gene032837:intron | 15.0% |
| !!! | CTTTTCACTATATAAAAAAA+GGG | + | chr5.4:29286753-29286772 | None:intergenic | 15.0% |
| !!! | TAACATAAAGTCTATTTTAT+GGG | - | chr5.4:29286421-29286440 | MS.gene032837:CDS | 15.0% |
| !!! | TATAGTGATATTTTTCAAAT+AGG | - | chr5.4:29286834-29286853 | MS.gene032837:intron | 15.0% |
| !!! | TTAACATAAAGTCTATTTTA+TGG | - | chr5.4:29286420-29286439 | MS.gene032837:CDS | 15.0% |
| !!! | TTTTCACTATATAAAAAAAG+GGG | + | chr5.4:29286752-29286771 | None:intergenic | 15.0% |
| !! | AAAAAACTAATCATAACTGA+AGG | + | chr5.4:29287295-29287314 | None:intergenic | 20.0% |
| !!! | AAATGATTTTATGATATTGG+AGG | + | chr5.4:29287543-29287562 | None:intergenic | 20.0% |
| !!! | AGTTAGAAAGGTTTTTTTTA+TGG | - | chr5.4:29286454-29286473 | MS.gene032837:intron | 20.0% |
| !!! | CATATCACCTAATTTTTTTT+TGG | - | chr5.4:29288882-29288901 | MS.gene032837:intron | 20.0% |
| !!! | CTGTTGTTTTTTTAGAAAAT+TGG | - | chr5.4:29288966-29288985 | MS.gene032837:intron | 20.0% |
| !!! | GTTAGAAAGGTTTTTTTTAT+GGG | - | chr5.4:29286455-29286474 | MS.gene032837:intron | 20.0% |
| !!! | TTAGAAAGGTTTTTTTTATG+GGG | - | chr5.4:29286456-29286475 | MS.gene032837:intron | 20.0% |
| !!! | TTTTTCTTATAATAGAGACT+GGG | - | chr5.4:29286975-29286994 | MS.gene032837:intron | 20.0% |
| !!! | TTTTTTCTTATAATAGAGAC+TGG | - | chr5.4:29286974-29286993 | MS.gene032837:intron | 20.0% |
| ! | AAATCTTGAACTATGAAGTA+AGG | + | chr5.4:29288382-29288401 | None:intergenic | 25.0% |
| ! | AACTATTAAGGCTACTAATT+TGG | + | chr5.4:29287197-29287216 | None:intergenic | 25.0% |
| ! | ACATAATCACTCATTTAAAC+AGG | + | chr5.4:29287168-29287187 | None:intergenic | 25.0% |
| ! | ACATGTTAATGCAACTATTA+AGG | + | chr5.4:29287209-29287228 | None:intergenic | 25.0% |
| ! | ACTATTAAGGCTACTAATTT+GGG | + | chr5.4:29287196-29287215 | None:intergenic | 25.0% |
| ! | ATACTTACAAAGGATAAACA+AGG | + | chr5.4:29286095-29286114 | None:intergenic | 25.0% |
| ! | CTCTTCACCAAAAAAAAATT+AGG | + | chr5.4:29288892-29288911 | None:intergenic | 25.0% |
| ! | GCTATTTAACATAGATACAA+AGG | + | chr5.4:29285994-29286013 | None:intergenic | 25.0% |
| ! | TACTTACAAAGGATAAACAA+GGG | + | chr5.4:29286094-29286113 | None:intergenic | 25.0% |
| ! | TATCAACTTCAAAAAAGTCT+TGG | + | chr5.4:29288571-29288590 | None:intergenic | 25.0% |
| ! | TTATCCTTTAATTCTTCTCT+TGG | + | chr5.4:29287123-29287142 | None:intergenic | 25.0% |
| !! | AAGTCTATTTTATGGGTTTA+TGG | - | chr5.4:29286428-29286447 | MS.gene032837:intron | 25.0% |
| !! | ATATCATAGCATTGAAATCT+TGG | + | chr5.4:29288289-29288308 | None:intergenic | 25.0% |
| !! | CTCTTAATTGATTCAACTAA+AGG | - | chr5.4:29288051-29288070 | MS.gene032837:intron | 25.0% |
| !! | CTGAAGTAATTGCTAATTTT+TGG | + | chr5.4:29286900-29286919 | None:intergenic | 25.0% |
| !! | TATCATAGCATTGAAATCTT+GGG | + | chr5.4:29288288-29288307 | None:intergenic | 25.0% |
| !!! | AAGTTTTTTATGACTGAATC+TGG | - | chr5.4:29286323-29286342 | MS.gene032837:CDS | 25.0% |
| !!! | AATTGCTAATTTTTGGTCAA+CGG | + | chr5.4:29286893-29286912 | None:intergenic | 25.0% |
| !!! | AGTTGATAATTGCAATTTTC+AGG | - | chr5.4:29288583-29288602 | MS.gene032837:intron | 25.0% |
| !!! | GTGAGTTTTTTTTGATCTAT+TGG | - | chr5.4:29286160-29286179 | MS.gene032837:intron | 25.0% |
| !!! | GTTTTGCTTTTGTCTTAAAA+GGG | - | chr5.4:29287941-29287960 | MS.gene032837:intron | 25.0% |
| !!! | TATCTTGTGTTTTTTTTTGC+AGG | - | chr5.4:29286058-29286077 | MS.gene032837:intron | 25.0% |
| AACAATATTCTTGGTCTCTA+TGG | + | chr5.4:29286218-29286237 | None:intergenic | 30.0% | |
| AACTATGTGATCAAGTCATT+GGG | + | chr5.4:29287730-29287749 | None:intergenic | 30.0% | |
| AACTATGTTATCATGGAATC+AGG | + | chr5.4:29287827-29287846 | None:intergenic | 30.0% | |
| AACTTACACTTCAAGAACTT+TGG | + | chr5.4:29286308-29286327 | None:intergenic | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | - | chr5.4:29286650-29286669 | MS.gene032837:intron | 30.0% | |
| AGCCATTTGATTATGATATC+AGG | + | chr5.4:29288263-29288282 | None:intergenic | 30.0% | |
| ATAACAACAAAAAAGAGCAG+TGG | + | chr5.4:29288448-29288467 | None:intergenic | 30.0% | |
| ATGTATCTGATCTATACATC+AGG | + | chr5.4:29286925-29286944 | None:intergenic | 30.0% | |
| ATTTGAAAGACTCATCACAA+AGG | - | chr5.4:29288851-29288870 | MS.gene032837:intron | 30.0% | |
| GAATTGTTTGCAACAATTGT+GGG | + | chr5.4:29287333-29287352 | None:intergenic | 30.0% | |
| GCCATTTGATTATGATATCA+GGG | + | chr5.4:29288262-29288281 | None:intergenic | 30.0% | |
| GGTTTATGGAAAAGTTAGAA+AGG | - | chr5.4:29286442-29286461 | MS.gene032837:intron | 30.0% | |
| GTTTGAAAAAGAATTGTTCC+AGG | - | chr5.4:29288009-29288028 | MS.gene032837:intron | 30.0% | |
| TAACTATGTGATCAAGTCAT+TGG | + | chr5.4:29287731-29287750 | None:intergenic | 30.0% | |
| TCAACCAAGAGAAGAATTAA+AGG | - | chr5.4:29287116-29287135 | MS.gene032837:intron | 30.0% | |
| TGAATTGTTTGCAACAATTG+TGG | + | chr5.4:29287334-29287353 | None:intergenic | 30.0% | |
| TTGCAATTTATCTGCATTCA+GGG | - | chr5.4:29286679-29286698 | MS.gene032837:intron | 30.0% | |
| TTGCATATTATCTGCATTCA+GGG | + | chr5.4:29286529-29286548 | None:intergenic | 30.0% | |
| TTGGTCATCAACAATATTCT+TGG | + | chr5.4:29286227-29286246 | None:intergenic | 30.0% | |
| TTTGCAATTTATCTGCATTC+AGG | - | chr5.4:29286678-29286697 | MS.gene032837:intron | 30.0% | |
| TTTGCATATTATCTGCATTC+AGG | + | chr5.4:29286530-29286549 | None:intergenic | 30.0% | |
| ! | AGCAAGAACATCAAAGTTTT+TGG | + | chr5.4:29285958-29285977 | None:intergenic | 30.0% |
| ! | GGAAAAAAGCTCTAGTAATT+TGG | - | chr5.4:29287962-29287981 | MS.gene032837:intron | 30.0% |
| ! | TTAACATGTCTAGTAGGTTT+TGG | - | chr5.4:29287220-29287239 | MS.gene032837:intron | 30.0% |
| ! | TTTTATGATATTGGAGGCAA+AGG | + | chr5.4:29287537-29287556 | None:intergenic | 30.0% |
| ! | TTTTGTTGAGAGTTAGATTG+AGG | - | chr5.4:29287460-29287479 | MS.gene032837:intron | 30.0% |
| !! | AGTATTTGTACTAGTCTTCT+AGG | - | chr5.4:29287398-29287417 | MS.gene032837:intron | 30.0% |
| !! | ATATTGTTGATGACCAACAA+TGG | - | chr5.4:29286230-29286249 | MS.gene032837:CDS | 30.0% |
| !! | ATTTGCGTGCTTTATTTAGT+GGG | - | chr5.4:29288487-29288506 | MS.gene032837:intron | 30.0% |
| !! | GGTTTTGCTTTTGTCTTAAA+AGG | - | chr5.4:29287940-29287959 | MS.gene032837:intron | 30.0% |
| !! | TAAGTTTTGACCAAGACAAA+AGG | + | chr5.4:29286867-29286886 | None:intergenic | 30.0% |
| !!! | AAGGTAACGTTTTTTCTCTT+TGG | + | chr5.4:29287518-29287537 | None:intergenic | 30.0% |
| AAAAAGAATTGTTCCAGGCA+GGG | - | chr5.4:29288014-29288033 | MS.gene032837:intron | 35.0% | |
| AAAGCAAAACCATGTGATCA+TGG | + | chr5.4:29287931-29287950 | None:intergenic | 35.0% | |
| AACAGTGCGATTATGGAATT+AGG | + | chr5.4:29288230-29288249 | None:intergenic | 35.0% | |
| AACCATATGATCATGGTAAC+AGG | + | chr5.4:29287892-29287911 | None:intergenic | 35.0% | |
| AACTTTGCATAAGGCCAAAT+TGG | + | chr5.4:29288612-29288631 | None:intergenic | 35.0% | |
| AAGTGGTTGTACTCTACTAA+AGG | + | chr5.4:29287076-29287095 | None:intergenic | 35.0% | |
| AATTGTGGGTTCATGTAGAA+TGG | + | chr5.4:29288705-29288724 | None:intergenic | 35.0% | |
| ACTATGGTGAGATCACTATA+AGG | + | chr5.4:29287588-29287607 | None:intergenic | 35.0% | |
| ACTATGTGATCAAGTCATTG+GGG | + | chr5.4:29287729-29287748 | None:intergenic | 35.0% | |
| ATCCATGTGAACATGGTTTA+AGG | + | chr5.4:29287697-29287716 | None:intergenic | 35.0% | |
| ATCCTGTTACCATGATCATA+TGG | - | chr5.4:29287887-29287906 | MS.gene032837:intron | 35.0% | |
| ATGGAACAATTGCAGAACAA+TGG | + | chr5.4:29287270-29287289 | None:intergenic | 35.0% | |
| ATGGCTAAACCATATGATCA+TGG | + | chr5.4:29287899-29287918 | None:intergenic | 35.0% | |
| ATGGGTGAACTATGTTATCA+TGG | + | chr5.4:29287834-29287853 | None:intergenic | 35.0% | |
| CGATTATGGAATTAGGTTCA+TGG | + | chr5.4:29288223-29288242 | None:intergenic | 35.0% | |
| CTAATCATAACTGAAGGTCA+TGG | + | chr5.4:29287289-29287308 | None:intergenic | 35.0% | |
| CTCAGTATCAACTTTGCATA+AGG | + | chr5.4:29288621-29288640 | None:intergenic | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | - | chr5.4:29286649-29286668 | MS.gene032837:intron | 35.0% | |
| GCCCTGATATCATAATCAAA+TGG | - | chr5.4:29288258-29288277 | MS.gene032837:intron | 35.0% | |
| GTACTCGAATGAATACCAAT+AGG | - | chr5.4:29287482-29287501 | MS.gene032837:intron | 35.0% | |
| GTTGCATTAACATGTCTAGT+AGG | - | chr5.4:29287214-29287233 | MS.gene032837:intron | 35.0% | |
| TCAACAAAAACATCCGTGAT+AGG | + | chr5.4:29287449-29287468 | None:intergenic | 35.0% | |
| TCACATAAAGAATCGCACTA+TGG | + | chr5.4:29287604-29287623 | None:intergenic | 35.0% | |
| TCACATCACAGTTTACCAAT+TGG | - | chr5.4:29288311-29288330 | MS.gene032837:intron | 35.0% | |
| TCAGGGACTAAATTGACTAA+CGG | - | chr5.4:29286603-29286622 | MS.gene032837:intron | 35.0% | |
| TGATCAAGGTTTCAAAGTCA+TGG | + | chr5.4:29288190-29288209 | None:intergenic | 35.0% | |
| TGTCAGATATGCTTCAATCA+AGG | - | chr5.4:29286192-29286211 | MS.gene032837:CDS | 35.0% | |
| TTACTGAATATGTTCTTCCG+TGG | + | chr5.4:29288774-29288793 | None:intergenic | 35.0% | |
| ! | AGTCACTTTAGTCCTTGAAT+GGG | + | chr5.4:29286725-29286744 | None:intergenic | 35.0% |
| ! | ATGGATTAACCATGTGATCA+GGG | + | chr5.4:29288171-29288190 | None:intergenic | 35.0% |
| ! | ATGGATTATCCATGTGAACA+TGG | + | chr5.4:29287704-29287723 | None:intergenic | 35.0% |
| ! | TAGTCACTTTAGTCCTTGAA+TGG | + | chr5.4:29286726-29286745 | None:intergenic | 35.0% |
| ! | TTGGTTCTTCCTCACTTTAA+TGG | - | chr5.4:29288648-29288667 | MS.gene032837:intron | 35.0% |
| !! | ACTTTGAAACCTTGATCACA+TGG | - | chr5.4:29288192-29288211 | MS.gene032837:intron | 35.0% |
| !! | CAAAGTTGATACTGAGTTGT+TGG | - | chr5.4:29288625-29288644 | MS.gene032837:intron | 35.0% |
| !! | CAATTTTCAGGCTTCCAATT+TGG | - | chr5.4:29288595-29288614 | MS.gene032837:intron | 35.0% |
| !! | CTTTGAAACCTTGATCACAT+GGG | - | chr5.4:29288193-29288212 | MS.gene032837:intron | 35.0% |
| !! | GATTTGCGTGCTTTATTTAG+TGG | - | chr5.4:29288486-29288505 | MS.gene032837:intron | 35.0% |
| !! | TTTGTACTAGTCTTCTAGGT+TGG | - | chr5.4:29287402-29287421 | MS.gene032837:intron | 35.0% |
| !!! | TGTTTTTTTTTGCAGGCCTT+TGG | - | chr5.4:29286065-29286084 | MS.gene032837:intron | 35.0% |
| AATGGGGTTAAGTCCTATCA+CGG | - | chr5.4:29287433-29287452 | MS.gene032837:intron | 40.0% | |
| ACCAACAATGGCTCACTTAT+TGG | - | chr5.4:29286242-29286261 | MS.gene032837:CDS | 40.0% | |
| ACCCATGTGATCATTGTGTT+AGG | + | chr5.4:29288103-29288122 | None:intergenic | 40.0% | |
| ACCCTAACACAATGATCACA+TGG | - | chr5.4:29288098-29288117 | MS.gene032837:intron | 40.0% | |
| ACTAACGAAGTCCACATTCA+GGG | - | chr5.4:29286586-29286605 | MS.gene032837:intron | 40.0% | |
| ATTATGCAATCTTGCTCCGT+TGG | + | chr5.4:29287638-29287657 | None:intergenic | 40.0% | |
| CCAACAATGGCTCACTTATT+GGG | - | chr5.4:29286243-29286262 | MS.gene032837:CDS | 40.0% | |
| CCCATGTGATCATTGTGTTA+GGG | + | chr5.4:29288102-29288121 | None:intergenic | 40.0% | |
| CCCTAACACAATGATCACAT+GGG | - | chr5.4:29288099-29288118 | MS.gene032837:intron | 40.0% | |
| GAAAAAGAATTGTTCCAGGC+AGG | - | chr5.4:29288013-29288032 | MS.gene032837:intron | 40.0% | |
| GGATAAACAAGGGTTACCAA+AGG | + | chr5.4:29286084-29286103 | None:intergenic | 40.0% | |
| GTCAATTTAGTCCCTGAATG+TGG | + | chr5.4:29286534-29286515 | None:intergenic | 40.0% | |
| GTCTGCACATCAACAACAAT+AGG | + | chr5.4:29289042-29289061 | None:intergenic | 40.0% | |
| GTGTGTTAACAGTGCGATTA+TGG | + | chr5.4:29288237-29288256 | None:intergenic | 40.0% | |
| GTTGATACTGAGTTGTTGGT+TGG | - | chr5.4:29288629-29288648 | MS.gene032837:intron | 40.0% | |
| TGATAGGACTTAACCCCATT+AGG | + | chr5.4:29287433-29287452 | None:intergenic | 40.0% | |
| TGATTGTGACTTCGTGTCAT+GGG | + | chr5.4:29287852-29287871 | None:intergenic | 40.0% | |
| TGCAGGTTCAAAATACGAAG+TGG | + | chr5.4:29287093-29287112 | None:intergenic | 40.0% | |
| TTATAATAGAGACTGGGCAG+AGG | - | chr5.4:29286981-29287000 | MS.gene032837:intron | 40.0% | |
| TTTGGACTTCACTCACCTAT+TGG | + | chr5.4:29287500-29287519 | None:intergenic | 40.0% | |
| ! | ACAGAGAATCTAAAGCAAGG+AGG | - | chr5.4:29289064-29289083 | MS.gene032837:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr5.4:29286483-29286502 | MS.gene032837:intron | 40.0% |
| ! | ATGGATTACCCATGTGATCA+AGG | + | chr5.4:29288204-29288223 | None:intergenic | 40.0% |
| ! | CATGGATTAACCATGTGATC+AGG | + | chr5.4:29288172-29288191 | None:intergenic | 40.0% |
| ! | CTAGGTTGGACTTTCCTAAT+GGG | - | chr5.4:29287416-29287435 | MS.gene032837:intron | 40.0% |
| ! | CTGACAGAGAATCTAAAGCA+AGG | - | chr5.4:29289061-29289080 | MS.gene032837:intron | 40.0% |
| ! | GAATCTAAAGCAAGGAGGAA+TGG | - | chr5.4:29289069-29289088 | MS.gene032837:CDS | 40.0% |
| ! | GAGAGGTACATGCAAGAAAA+TGG | - | chr5.4:29288819-29288838 | MS.gene032837:CDS | 40.0% |
| ! | GGTTTCTTGCTACTTCTGTT+TGG | + | chr5.4:29287147-29287166 | None:intergenic | 40.0% |
| ! | GTCACTTTAGTCCTTGAATG+GGG | + | chr5.4:29286724-29286743 | None:intergenic | 40.0% |
| ! | TAGGTTGGACTTTCCTAATG+GGG | - | chr5.4:29287417-29287436 | MS.gene032837:intron | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr5.4:29286482-29286501 | MS.gene032837:intron | 40.0% |
| ! | TCTAGGTTGGACTTTCCTAA+TGG | - | chr5.4:29287415-29287434 | MS.gene032837:intron | 40.0% |
| ! | TTGACCAAGACAAAAGGCAT+TGG | + | chr5.4:29286861-29286880 | None:intergenic | 40.0% |
| !! | TGACCAAGACAAAAGGCATT+GGG | + | chr5.4:29286860-29286879 | None:intergenic | 40.0% |
| !! | TGTGATCTGACTTGTTCCAA+CGG | - | chr5.4:29287619-29287638 | MS.gene032837:intron | 40.0% |
| !!! | ATGTCTAGTAGGTTTTGGCT+AGG | - | chr5.4:29287225-29287244 | MS.gene032837:intron | 40.0% |
| AACTATGTGACCATAGCCAC+AGG | + | chr5.4:29287795-29287814 | None:intergenic | 45.0% | |
| ACCATGTGATCATGGCATTG+AGG | + | chr5.4:29287923-29287942 | None:intergenic | 45.0% | |
| ACTAAAGGTCATCAACCACC+TGG | - | chr5.4:29288066-29288085 | MS.gene032837:intron | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | - | chr5.4:29286618-29286637 | MS.gene032837:intron | 45.0% | |
| ACTATGTGACCATAGCCACA+GGG | + | chr5.4:29287794-29287813 | None:intergenic | 45.0% | |
| AGCGGCATTTGTGGTAATTG+TGG | + | chr5.4:29288720-29288739 | None:intergenic | 45.0% | |
| ATGTTCTTAGTGCTGCAGAG+AGG | - | chr5.4:29288802-29288821 | MS.gene032837:CDS | 45.0% | |
| CCCAATAAGTGAGCCATTGT+TGG | + | chr5.4:29286246-29286265 | None:intergenic | 45.0% | |
| CGCAAATGTGGTATGTTCCA+CGG | - | chr5.4:29288754-29288773 | MS.gene032837:CDS | 45.0% | |
| CTAAAGGTCATCAACCACCT+GGG | - | chr5.4:29288067-29288086 | MS.gene032837:intron | 45.0% | |
| CTTCTCTTGGTTGAGTTTGC+AGG | + | chr5.4:29287110-29287129 | None:intergenic | 45.0% | |
| GACTAACGAAGTCCACATTC+AGG | - | chr5.4:29286585-29286604 | MS.gene032837:intron | 45.0% | |
| GCGGCATTTGTGGTAATTGT+GGG | + | chr5.4:29288719-29288738 | None:intergenic | 45.0% | |
| GGCCTTAAACCATGTTCACA+TGG | - | chr5.4:29287692-29287711 | MS.gene032837:intron | 45.0% | |
| GTGATTGTGACTTCGTGTCA+TGG | + | chr5.4:29287853-29287872 | None:intergenic | 45.0% | |
| TACCACATTTGCGAAGTTCC+TGG | + | chr5.4:29288747-29288766 | None:intergenic | 45.0% | |
| TATGCAAAACAGTCCCTGCA+TGG | - | chr5.4:29286542-29286561 | MS.gene032837:intron | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr5.4:29286558-29286577 | None:intergenic | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr5.4:29286554-29286573 | MS.gene032837:intron | 45.0% | |
| TCCTCAATGCCATGATCACA+TGG | - | chr5.4:29287919-29287938 | MS.gene032837:intron | 45.0% | |
| TGATCAAGTCATTGGGGTCA+TGG | + | chr5.4:29287723-29287742 | None:intergenic | 45.0% | |
| TGTTAGGGTAACCTTTACCC+AGG | + | chr5.4:29288087-29288106 | None:intergenic | 45.0% | |
| TTGAGTACGCGTTAGCCAAT+TGG | + | chr5.4:29288329-29288348 | None:intergenic | 45.0% | |
| ! | CATGTGATCAGGGTTAGCAA+GGG | + | chr5.4:29288161-29288180 | None:intergenic | 45.0% |
| ! | GTCACTTTAGTCCCTGAATG+GGG | - | chr5.4:29286484-29286503 | MS.gene032837:intron | 45.0% |
| ! | GTGATCATGGCATTGAGGAA+TGG | + | chr5.4:29287918-29287937 | None:intergenic | 45.0% |
| ! | TGTGCTGCTCCATTAAAGTG+AGG | + | chr5.4:29288660-29288679 | None:intergenic | 45.0% |
| CCTTGCTAACCCTGATCACA+TGG | - | chr5.4:29288159-29288178 | MS.gene032837:intron | 50.0% | |
| GACGAATCGTTCCCCATTCA+AGG | - | chr5.4:29286710-29286729 | MS.gene032837:intron | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | + | chr5.4:29286729-29286710 | None:intergenic | 50.0% | |
| GACTAACGGAGTCTGCATTC+AGG | - | chr5.4:29286617-29286636 | MS.gene032837:intron | 50.0% | |
| GTCATCAACCACCTGGGTAA+AGG | - | chr5.4:29288073-29288092 | MS.gene032837:intron | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | + | chr5.4:29286559-29286578 | None:intergenic | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr5.4:29286553-29286572 | MS.gene032837:intron | 50.0% | |
| TAACCCAAACCCTGTGGCTA+TGG | - | chr5.4:29287782-29287801 | MS.gene032837:intron | 50.0% | |
| TAGGGTAACCTTTACCCAGG+TGG | + | chr5.4:29288084-29288103 | None:intergenic | 50.0% | |
| TCTGGATAACCCAAACCCTG+TGG | - | chr5.4:29287776-29287795 | MS.gene032837:intron | 50.0% | |
| TCTTGAGTTCAAACCCTGCC+TGG | + | chr5.4:29288030-29288049 | None:intergenic | 50.0% | |
| TGACCATAGCCACAGGGTTT+GGG | + | chr5.4:29287788-29287807 | None:intergenic | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | + | chr5.4:29286728-29286709 | None:intergenic | 50.0% | |
| TGCCAGGAACTTCGCAAATG+TGG | - | chr5.4:29288742-29288761 | MS.gene032837:CDS | 50.0% | |
| TGCGAAGTTCCTGGCATTAG+CGG | + | chr5.4:29288738-29288757 | None:intergenic | 50.0% | |
| TTGGGTTATCCAGATGGTCC+TGG | + | chr5.4:29287770-29287789 | None:intergenic | 50.0% | |
| ! | AGGCCCAATGCCTTTTGTCT+TGG | - | chr5.4:29286854-29286873 | MS.gene032837:intron | 50.0% |
| ! | CAGGGTTTGGGTTATCCAGA+TGG | + | chr5.4:29287776-29287795 | None:intergenic | 50.0% |
| ! | CCATGTGATCAGGGTTAGCA+AGG | + | chr5.4:29288162-29288181 | None:intergenic | 50.0% |
| ATCCAGATGGTCCTGGCATC+TGG | + | chr5.4:29287763-29287782 | None:intergenic | 55.0% | |
| CCACAAATGCCGCTAATGCC+AGG | - | chr5.4:29288726-29288745 | MS.gene032837:CDS | 55.0% | |
| CCTGGCATTAGCGGCATTTG+TGG | + | chr5.4:29288729-29288748 | None:intergenic | 55.0% | |
| GTGACCATAGCCACAGGGTT+TGG | + | chr5.4:29287789-29287808 | None:intergenic | 55.0% | |
| TAACCCATCACCCAGATGCC+AGG | - | chr5.4:29287749-29287768 | MS.gene032837:intron | 55.0% | |
| TCCAGATGGTCCTGGCATCT+GGG | + | chr5.4:29287762-29287781 | None:intergenic | 55.0% | |
| ACCCAGATGCCAGGACCATC+TGG | - | chr5.4:29287758-29287777 | MS.gene032837:intron | 60.0% | |
| GGTCCTGGCATCTGGGTGAT+GGG | + | chr5.4:29287755-29287774 | None:intergenic | 60.0% | |
| TGGTCCTGGCATCTGGGTGA+TGG | + | chr5.4:29287756-29287775 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 29285918 | 29289128 | 29285918 | ID=MS.gene032837 |
| chr5.4 | mRNA | 29285918 | 29289128 | 29285918 | ID=MS.gene032837.t1;Parent=MS.gene032837 |
| chr5.4 | exon | 29289067 | 29289128 | 29289067 | ID=MS.gene032837.t1.exon1;Parent=MS.gene032837.t1 |
| chr5.4 | CDS | 29289067 | 29289128 | 29289067 | ID=cds.MS.gene032837.t1;Parent=MS.gene032837.t1 |
| chr5.4 | exon | 29288940 | 29288966 | 29288940 | ID=MS.gene032837.t1.exon2;Parent=MS.gene032837.t1 |
| chr5.4 | CDS | 29288940 | 29288966 | 29288940 | ID=cds.MS.gene032837.t1;Parent=MS.gene032837.t1 |
| chr5.4 | exon | 29288726 | 29288848 | 29288726 | ID=MS.gene032837.t1.exon3;Parent=MS.gene032837.t1 |
| chr5.4 | CDS | 29288726 | 29288848 | 29288726 | ID=cds.MS.gene032837.t1;Parent=MS.gene032837.t1 |
| chr5.4 | exon | 29286174 | 29286441 | 29286174 | ID=MS.gene032837.t1.exon4;Parent=MS.gene032837.t1 |
| chr5.4 | CDS | 29286174 | 29286441 | 29286174 | ID=cds.MS.gene032837.t1;Parent=MS.gene032837.t1 |
| chr5.4 | exon | 29285918 | 29285986 | 29285918 | ID=MS.gene032837.t1.exon5;Parent=MS.gene032837.t1 |
| chr5.4 | CDS | 29285918 | 29285986 | 29285918 | ID=cds.MS.gene032837.t1;Parent=MS.gene032837.t1 |
| Gene Sequence |
| Protein sequence |
