Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83241.t1 | XP_013463996.1 | 98.6 | 347 | 5 | 0 | 1 | 347 | 13 | 359 | 7.50E-193 | 682.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83241.t1 | P49018 | 55.0 | 307 | 136 | 1 | 4 | 308 | 9 | 315 | 1.5e-93 | 344.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83241.t1 | A0A072V8S6 | 98.6 | 347 | 5 | 0 | 1 | 347 | 13 | 359 | 5.4e-193 | 682.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene83241 | MS.gene022880 | PPI |
MS.gene49698 | MS.gene83241 | PPI |
MS.gene83241 | MS.gene91904 | PPI |
MS.gene83241 | MS.gene072281 | PPI |
MS.gene83241 | MS.gene072282 | PPI |
MS.gene83241 | MS.gene78507 | PPI |
MS.gene022879 | MS.gene83241 | PPI |
MS.gene83241 | MS.gene030590 | PPI |
MS.gene83241 | MS.gene074024 | PPI |
MS.gene83241 | MS.gene70190 | PPI |
MS.gene83241 | MS.gene032837 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83241.t1 | MTR_2g058550 | 98.559 | 347 | 5 | 0 | 1 | 347 | 13 | 359 | 0.0 | 714 |
MS.gene83241.t1 | MTR_2g058550 | 98.442 | 321 | 5 | 0 | 27 | 347 | 1 | 321 | 0.0 | 664 |
MS.gene83241.t1 | MTR_1g085630 | 77.251 | 211 | 48 | 0 | 17 | 227 | 14 | 224 | 1.63e-123 | 358 |
MS.gene83241.t1 | MTR_7g079140 | 33.333 | 171 | 111 | 3 | 32 | 201 | 48 | 216 | 1.03e-23 | 102 |
MS.gene83241.t1 | MTR_3g104120 | 29.545 | 176 | 121 | 3 | 32 | 206 | 50 | 223 | 1.15e-22 | 99.0 |
MS.gene83241.t1 | MTR_1g016780 | 30.409 | 171 | 116 | 3 | 32 | 201 | 59 | 227 | 1.75e-22 | 98.6 |
MS.gene83241.t1 | MTR_7g032230 | 27.928 | 222 | 153 | 5 | 6 | 223 | 9 | 227 | 3.09e-22 | 97.4 |
MS.gene83241.t1 | MTR_7g075310 | 31.579 | 171 | 114 | 3 | 32 | 201 | 47 | 215 | 1.54e-20 | 92.8 |
MS.gene83241.t1 | MTR_4g101730 | 28.070 | 171 | 120 | 3 | 32 | 201 | 60 | 228 | 1.48e-18 | 86.3 |
MS.gene83241.t1 | MTR_4g101730 | 28.571 | 168 | 117 | 3 | 32 | 198 | 60 | 225 | 7.13e-18 | 84.7 |
MS.gene83241.t1 | MTR_3g449450 | 65.455 | 55 | 2 | 1 | 226 | 280 | 9 | 46 | 4.03e-14 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83241.t1 | AT1G08750 | 85.902 | 305 | 41 | 1 | 5 | 309 | 3 | 305 | 0.0 | 556 |
MS.gene83241.t1 | AT1G08750 | 85.902 | 305 | 41 | 1 | 5 | 309 | 3 | 305 | 0.0 | 556 |
MS.gene83241.t1 | AT1G08750 | 85.902 | 305 | 41 | 1 | 5 | 309 | 3 | 305 | 0.0 | 556 |
MS.gene83241.t1 | AT2G25940 | 33.333 | 180 | 115 | 4 | 29 | 206 | 42 | 218 | 2.72e-26 | 109 |
MS.gene83241.t1 | AT4G32940 | 32.768 | 177 | 114 | 4 | 32 | 206 | 60 | 233 | 8.80e-24 | 102 |
MS.gene83241.t1 | AT3G20210 | 28.713 | 202 | 133 | 5 | 8 | 201 | 17 | 215 | 5.10e-23 | 99.8 |
MS.gene83241.t1 | AT1G62710 | 27.461 | 193 | 136 | 4 | 10 | 201 | 31 | 220 | 4.91e-21 | 94.4 |
Find 64 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGTCTGCACCTCTCGTTTC+TGG | 0.130846 | 2.4:-34305021 | MS.gene83241:intron |
CTACGATACACACTAATAAT+TGG | 0.200478 | 2.4:-34305051 | MS.gene83241:CDS |
GCCGTTGACATCAACAAATT+TGG | 0.211724 | 2.4:+34300310 | None:intergenic |
CCCCGTACAAGTTAAGTCTA+TGG | 0.300091 | 2.4:+34304483 | None:intergenic |
AATGTGAATGGTTAGGTTTA+AGG | 0.300217 | 2.4:-34302223 | MS.gene83241:intron |
GCTCCATTCACCAGGTGTTT+TGG | 0.305889 | 2.4:-34301630 | MS.gene83241:CDS |
CCAATACTTTGTCATTGTAT+AGG | 0.337757 | 2.4:-34304704 | MS.gene83241:intron |
AACTTTATGCGGGTACTAAC+AGG | 0.356403 | 2.4:-34303075 | MS.gene83241:CDS |
ACCTGAAATTAAAATGCCTT+TGG | 0.358688 | 2.4:-34298219 | MS.gene83241:CDS |
TTCATCACTAAGAAGTCGTT+TGG | 0.360064 | 2.4:+34303026 | None:intergenic |
GAAATCAGACCTGTGAAAAC+AGG | 0.360804 | 2.4:+34302163 | None:intergenic |
GTTTAAGGAGCTGCTGATAA+TGG | 0.378305 | 2.4:-34302208 | MS.gene83241:CDS |
CCTATATCAACGACATTTAG+AGG | 0.382381 | 2.4:-34300272 | MS.gene83241:CDS |
CAATTCCTCAGGTAGATTAT+CGG | 0.383709 | 2.4:-34303119 | MS.gene83241:intron |
CCTCTAAATGTCGTTGATAT+AGG | 0.389044 | 2.4:+34300272 | None:intergenic |
CAGGTTTAATTACCGACATA+TGG | 0.399461 | 2.4:-34304727 | MS.gene83241:CDS |
AATTCCTCAGGTAGATTATC+GGG | 0.407761 | 2.4:-34303118 | MS.gene83241:intron |
TTGGATTATATGAATTGAAA+AGG | 0.416779 | 2.4:+34300329 | None:intergenic |
ACCATAGACTTAACTTGTAC+GGG | 0.441211 | 2.4:-34304484 | MS.gene83241:CDS |
TACGATACACACTAATAATT+GGG | 0.444175 | 2.4:-34305050 | MS.gene83241:CDS |
CTAAGAAGTCGTTTGGACCT+TGG | 0.451139 | 2.4:+34303033 | None:intergenic |
AACCATAGACTTAACTTGTA+CGG | 0.460660 | 2.4:-34304485 | MS.gene83241:CDS |
TTGCCAAAACACCTGGTGAA+TGG | 0.478492 | 2.4:+34301627 | None:intergenic |
ATGAGTATGATCCTCTCATC+AGG | 0.492372 | 2.4:+34304572 | None:intergenic |
CTTCCAATTGCCAAAACACC+TGG | 0.500408 | 2.4:+34301620 | None:intergenic |
ACACTCTTGCCTTCTTTGAG+AGG | 0.501916 | 2.4:-34300725 | MS.gene83241:CDS |
TCCAAATTTGTTGATGTCAA+CGG | 0.508329 | 2.4:-34300311 | MS.gene83241:CDS |
TCAGATATTGATTGATCCAA+AGG | 0.510624 | 2.4:+34298203 | None:intergenic |
TATATTCAGCCTCTCAAAGA+AGG | 0.515894 | 2.4:+34300716 | None:intergenic |
CCTATACAATGACAAAGTAT+TGG | 0.519127 | 2.4:+34304704 | None:intergenic |
TCTTGACAGCTCCATTCACC+AGG | 0.520421 | 2.4:-34301638 | MS.gene83241:intron |
GAACTCATATTCGCATCACT+TGG | 0.522926 | 2.4:-34301582 | MS.gene83241:CDS |
ATGACAATGCTTCATTGAGC+AGG | 0.525315 | 2.4:-34300692 | MS.gene83241:intron |
AAACGACTTCTTAGTGATGA+AGG | 0.525949 | 2.4:-34303024 | MS.gene83241:CDS |
TATATATGACAGGGCATGGA+GGG | 0.527970 | 2.4:-34302987 | MS.gene83241:CDS |
AAACAGGGTAGAGGCTTGGC+AGG | 0.531922 | 2.4:+34302179 | None:intergenic |
TTTGAGAAACTCTGTTGATG+AGG | 0.537388 | 2.4:-34298165 | MS.gene83241:CDS |
TACACACTGACTCAGCCTAC+AGG | 0.543853 | 2.4:-34298268 | MS.gene83241:CDS |
AGCAAATGAAAGAGAAGCAC+AGG | 0.558467 | 2.4:-34302900 | MS.gene83241:intron |
GTGAAAACAGGGTAGAGGCT+TGG | 0.558768 | 2.4:+34302175 | None:intergenic |
TTTGTTCGACTGAGACCTGT+AGG | 0.558930 | 2.4:+34298253 | None:intergenic |
GCAATTGGAAGCAGTATGAA+AGG | 0.565406 | 2.4:-34301608 | MS.gene83241:CDS |
AAATGTGGAAAACTTTATGC+GGG | 0.580785 | 2.4:-34303085 | MS.gene83241:CDS |
GTCATGAGACTGCTGTTCCA+AGG | 0.585552 | 2.4:-34303050 | MS.gene83241:CDS |
GACCTGTGAAAACAGGGTAG+AGG | 0.588751 | 2.4:+34302170 | None:intergenic |
TTCAGGACTGTTAAGCGGCT+AGG | 0.603180 | 2.4:-34304599 | MS.gene83241:intron |
TAAATGTGGAAAACTTTATG+CGG | 0.606027 | 2.4:-34303086 | MS.gene83241:CDS |
TAACTTGTACGGGGATAATG+TGG | 0.606557 | 2.4:-34304474 | MS.gene83241:CDS |
GTCAACGGCATATTACAGAA+TGG | 0.617483 | 2.4:-34300296 | MS.gene83241:CDS |
TCGGGGCTATGAAGTAAATG+TGG | 0.618030 | 2.4:-34303100 | MS.gene83241:CDS |
AAATCAGACCTGTGAAAACA+GGG | 0.618937 | 2.4:+34302164 | None:intergenic |
ATATATGACAGGGCATGGAG+GGG | 0.619576 | 2.4:-34302986 | MS.gene83241:CDS |
ACAAAGTATTGGCCATATGT+CGG | 0.620535 | 2.4:+34304715 | None:intergenic |
TCACATTCAGGACTGTTAAG+CGG | 0.633485 | 2.4:-34304604 | MS.gene83241:intron |
GGCTAGGAATACCTGATGAG+AGG | 0.637721 | 2.4:-34304583 | MS.gene83241:CDS |
ACTCATGTTAGCAGATGACA+TGG | 0.646036 | 2.4:-34304555 | MS.gene83241:CDS |
TAAGGAGCTGCTGATAATGG+TGG | 0.649855 | 2.4:-34302205 | MS.gene83241:CDS |
AAGTAGAGTGTGCTACAGAG+TGG | 0.662083 | 2.4:+34305086 | None:intergenic |
CCATAGACTTAACTTGTACG+GGG | 0.681153 | 2.4:-34304483 | MS.gene83241:CDS |
ATTCCTCAGGTAGATTATCG+GGG | 0.689658 | 2.4:-34303117 | MS.gene83241:intron |
CTTGTACGGGGATAATGTGG+AGG | 0.689868 | 2.4:-34304471 | MS.gene83241:intron |
CTTAGTTTACCAGAAACGAG+AGG | 0.703428 | 2.4:+34305012 | None:intergenic |
ATATCAACGACATTTAGAGG+AGG | 0.726142 | 2.4:-34300269 | MS.gene83241:intron |
TTATATATGACAGGGCATGG+AGG | 0.727195 | 2.4:-34302988 | MS.gene83241:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 34298139 | 34305146 | 34298139 | ID=MS.gene83241 |
chr2.4 | mRNA | 34298139 | 34305146 | 34298139 | ID=MS.gene83241.t1;Parent=MS.gene83241 |
chr2.4 | exon | 34305022 | 34305146 | 34305022 | ID=MS.gene83241.t1.exon1;Parent=MS.gene83241.t1 |
chr2.4 | CDS | 34305022 | 34305146 | 34305022 | ID=cds.MS.gene83241.t1;Parent=MS.gene83241.t1 |
chr2.4 | exon | 34304705 | 34304746 | 34304705 | ID=MS.gene83241.t1.exon2;Parent=MS.gene83241.t1 |
chr2.4 | CDS | 34304705 | 34304746 | 34304705 | ID=cds.MS.gene83241.t1;Parent=MS.gene83241.t1 |
chr2.4 | exon | 34304472 | 34304616 | 34304472 | ID=MS.gene83241.t1.exon3;Parent=MS.gene83241.t1 |
chr2.4 | CDS | 34304472 | 34304616 | 34304472 | ID=cds.MS.gene83241.t1;Parent=MS.gene83241.t1 |
chr2.4 | exon | 34302901 | 34303130 | 34302901 | ID=MS.gene83241.t1.exon4;Parent=MS.gene83241.t1 |
chr2.4 | CDS | 34302901 | 34303130 | 34302901 | ID=cds.MS.gene83241.t1;Parent=MS.gene83241.t1 |
chr2.4 | exon | 34302173 | 34302230 | 34302173 | ID=MS.gene83241.t1.exon5;Parent=MS.gene83241.t1 |
chr2.4 | CDS | 34302173 | 34302230 | 34302173 | ID=cds.MS.gene83241.t1;Parent=MS.gene83241.t1 |
chr2.4 | exon | 34301574 | 34301651 | 34301574 | ID=MS.gene83241.t1.exon6;Parent=MS.gene83241.t1 |
chr2.4 | CDS | 34301574 | 34301651 | 34301574 | ID=cds.MS.gene83241.t1;Parent=MS.gene83241.t1 |
chr2.4 | exon | 34300693 | 34300781 | 34300693 | ID=MS.gene83241.t1.exon7;Parent=MS.gene83241.t1 |
chr2.4 | CDS | 34300693 | 34300781 | 34300693 | ID=cds.MS.gene83241.t1;Parent=MS.gene83241.t1 |
chr2.4 | exon | 34300270 | 34300351 | 34300270 | ID=MS.gene83241.t1.exon8;Parent=MS.gene83241.t1 |
chr2.4 | CDS | 34300270 | 34300351 | 34300270 | ID=cds.MS.gene83241.t1;Parent=MS.gene83241.t1 |
chr2.4 | exon | 34298139 | 34298330 | 34298139 | ID=MS.gene83241.t1.exon9;Parent=MS.gene83241.t1 |
chr2.4 | CDS | 34298139 | 34298330 | 34298139 | ID=cds.MS.gene83241.t1;Parent=MS.gene83241.t1 |
Gene Sequence |
Protein sequence |