Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045787.t1 | XP_013463996.1 | 97.4 | 388 | 10 | 0 | 1 | 388 | 13 | 400 | 2.00E-214 | 755 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045787.t1 | P49018 | 54.7 | 307 | 137 | 1 | 4 | 308 | 9 | 315 | 4.3e-93 | 343.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045787.t1 | A0A072V8S6 | 97.4 | 388 | 10 | 0 | 1 | 388 | 13 | 400 | 1.4e-214 | 755.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045787 | MS.gene072281 | PPI |
| MS.gene045787 | MS.gene78507 | PPI |
| MS.gene045787 | MS.gene072282 | PPI |
| MS.gene045787 | MS.gene030590 | PPI |
| MS.gene022879 | MS.gene045787 | PPI |
| MS.gene045787 | MS.gene074024 | PPI |
| MS.gene045787 | MS.gene70190 | PPI |
| MS.gene045787 | MS.gene032837 | PPI |
| MS.gene045787 | MS.gene022880 | PPI |
| MS.gene49698 | MS.gene045787 | PPI |
| MS.gene045787 | MS.gene91904 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045787.t1 | MTR_2g058550 | 97.423 | 388 | 10 | 0 | 1 | 388 | 13 | 400 | 0.0 | 785 |
| MS.gene045787.t1 | MTR_2g058550 | 97.238 | 362 | 10 | 0 | 27 | 388 | 1 | 362 | 0.0 | 736 |
| MS.gene045787.t1 | MTR_1g085630 | 77.725 | 211 | 47 | 0 | 17 | 227 | 14 | 224 | 3.53e-122 | 358 |
| MS.gene045787.t1 | MTR_7g079140 | 33.333 | 171 | 111 | 3 | 32 | 201 | 48 | 216 | 4.01e-23 | 101 |
| MS.gene045787.t1 | MTR_3g104120 | 29.545 | 176 | 121 | 3 | 32 | 206 | 50 | 223 | 4.93e-22 | 98.6 |
| MS.gene045787.t1 | MTR_1g016780 | 30.409 | 171 | 116 | 3 | 32 | 201 | 59 | 227 | 9.97e-22 | 97.8 |
| MS.gene045787.t1 | MTR_7g032230 | 28.311 | 219 | 150 | 5 | 6 | 220 | 9 | 224 | 1.59e-21 | 97.1 |
| MS.gene045787.t1 | MTR_7g075310 | 31.579 | 171 | 114 | 3 | 32 | 201 | 47 | 215 | 5.59e-20 | 92.4 |
| MS.gene045787.t1 | MTR_4g101730 | 28.070 | 171 | 120 | 3 | 32 | 201 | 60 | 228 | 3.48e-18 | 86.3 |
| MS.gene045787.t1 | MTR_3g449460 | 44.037 | 109 | 44 | 2 | 318 | 426 | 1 | 92 | 1.27e-17 | 78.2 |
| MS.gene045787.t1 | MTR_4g101730 | 28.571 | 168 | 117 | 3 | 32 | 198 | 60 | 225 | 1.95e-17 | 84.7 |
| MS.gene045787.t1 | MTR_3g449450 | 65.455 | 55 | 2 | 1 | 226 | 280 | 9 | 46 | 6.89e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045787.t1 | AT1G08750 | 71.576 | 387 | 103 | 4 | 5 | 389 | 3 | 384 | 0.0 | 555 |
| MS.gene045787.t1 | AT1G08750 | 71.576 | 387 | 103 | 4 | 5 | 389 | 3 | 384 | 0.0 | 555 |
| MS.gene045787.t1 | AT1G08750 | 71.576 | 387 | 103 | 4 | 5 | 389 | 3 | 384 | 0.0 | 555 |
| MS.gene045787.t1 | AT2G25940 | 32.796 | 186 | 120 | 4 | 23 | 206 | 36 | 218 | 1.58e-25 | 108 |
| MS.gene045787.t1 | AT4G32940 | 32.768 | 177 | 114 | 4 | 32 | 206 | 60 | 233 | 6.54e-23 | 101 |
| MS.gene045787.t1 | AT3G20210 | 28.713 | 202 | 133 | 5 | 8 | 201 | 17 | 215 | 1.31e-22 | 100 |
| MS.gene045787.t1 | AT1G62710 | 28.655 | 171 | 119 | 3 | 32 | 201 | 52 | 220 | 2.06e-20 | 94.0 |
Find 79 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTCTGCACCTCTCGTTTC+TGG | 0.130846 | 2.1:-35868253 | MS.gene045787:intron |
| CTACGATGCACACTAATAAT+TGG | 0.208813 | 2.1:-35868283 | MS.gene045787:CDS |
| GCCGTTGACATCAACAAATT+TGG | 0.211724 | 2.1:+35863540 | None:intergenic |
| ACCTGAAATTAAAATGCTTT+TGG | 0.217511 | 2.1:-35861434 | MS.gene045787:CDS |
| CCCCGTACAAGTTAAGTCTA+TGG | 0.300091 | 2.1:+35867713 | None:intergenic |
| GCTCCATTCACCAGGTGTTT+TGG | 0.305889 | 2.1:-35864858 | MS.gene045787:CDS |
| TGCCATGGTTCCTCGTGTTC+TGG | 0.313516 | 2.1:-35860935 | MS.gene045787:intron |
| AATGTGAATGATTAGGTTTA+AGG | 0.316044 | 2.1:-35865451 | MS.gene045787:intron |
| TTGCTATGGCCTTGTTTCAA+TGG | 0.331401 | 2.1:-35861166 | MS.gene045787:CDS |
| CCAATACTTTGTCATTGTAT+AGG | 0.337757 | 2.1:-35867934 | MS.gene045787:intron |
| AACTTTATGCGGGTACTAAC+AGG | 0.356403 | 2.1:-35866296 | MS.gene045787:CDS |
| TTCATCACTAAGAAGTCGTT+TGG | 0.360064 | 2.1:+35866247 | None:intergenic |
| GAAATCAGACCTGTGAAAAC+AGG | 0.360804 | 2.1:+35865391 | None:intergenic |
| GTTTAAGGAGCTGCTGATAA+TGG | 0.378305 | 2.1:-35865436 | MS.gene045787:CDS |
| CCTATATCAACGACATTTAG+AGG | 0.382381 | 2.1:-35863502 | MS.gene045787:CDS |
| CAATTCCTCAGGTAGATTAT+CGG | 0.383709 | 2.1:-35866340 | MS.gene045787:intron |
| TCCATGGTGTTGGACAACTA+TGG | 0.384279 | 2.1:-35861239 | MS.gene045787:CDS |
| CCTCTAAATGTCGTTGATAT+AGG | 0.389044 | 2.1:+35863502 | None:intergenic |
| CAGGTTTAATTACCGACATA+TGG | 0.399461 | 2.1:-35867957 | MS.gene045787:CDS |
| AATTCCTCAGGTAGATTATC+GGG | 0.407761 | 2.1:-35866339 | MS.gene045787:intron |
| TTGGATTATATGAATTGAAA+AGG | 0.416779 | 2.1:+35863559 | None:intergenic |
| TGTTATATTTACAGCTTTGG+TGG | 0.427170 | 2.1:-35860843 | MS.gene045787:intron |
| ACCATAGACTTAACTTGTAC+GGG | 0.441211 | 2.1:-35867714 | MS.gene045787:CDS |
| CTAAGAAGTCGTTTGGACCT+TGG | 0.451139 | 2.1:+35866254 | None:intergenic |
| AACCATAGACTTAACTTGTA+CGG | 0.460660 | 2.1:-35867715 | MS.gene045787:CDS |
| TACGATGCACACTAATAATT+GGG | 0.470560 | 2.1:-35868282 | MS.gene045787:CDS |
| TTGCCAAAACACCTGGTGAA+TGG | 0.478492 | 2.1:+35864855 | None:intergenic |
| CAGGAAAATTTCCATGGTGT+TGG | 0.484436 | 2.1:-35861249 | MS.gene045787:CDS |
| ATGAGTATGATCCTCTCATC+AGG | 0.492372 | 2.1:+35867802 | None:intergenic |
| CTTCCAATTGCCAAAACACC+TGG | 0.500408 | 2.1:+35864848 | None:intergenic |
| ACACTCTTGCCTTCTTTGAG+AGG | 0.501916 | 2.1:-35863955 | MS.gene045787:CDS |
| TCCAAATTTGTTGATGTCAA+CGG | 0.508329 | 2.1:-35863541 | MS.gene045787:CDS |
| TATATTCAGCCTCTCAAAGA+AGG | 0.515894 | 2.1:+35863946 | None:intergenic |
| CCTATACAATGACAAAGTAT+TGG | 0.519127 | 2.1:+35867934 | None:intergenic |
| TCTTGACAGCTCCATTCACC+AGG | 0.520421 | 2.1:-35864866 | MS.gene045787:intron |
| GAACTCATATTCGCATCACT+TGG | 0.522926 | 2.1:-35864810 | MS.gene045787:CDS |
| ATGACAATGCTTCATTGAGC+AGG | 0.525315 | 2.1:-35863922 | MS.gene045787:intron |
| AAACGACTTCTTAGTGATGA+AGG | 0.525949 | 2.1:-35866245 | MS.gene045787:CDS |
| TATATATGACAGGGCATGGA+GGG | 0.527970 | 2.1:-35866208 | MS.gene045787:CDS |
| AAACAGGGTAGAGGCTTGGC+AGG | 0.531922 | 2.1:+35865407 | None:intergenic |
| TTTGAGAAACTCTGTTGATG+AGG | 0.537388 | 2.1:-35861380 | MS.gene045787:CDS |
| TACACACTGACTCAGCCTAC+AGG | 0.543853 | 2.1:-35861483 | MS.gene045787:CDS |
| TCGGTGGTGGAGCACTGCCA+TGG | 0.552368 | 2.1:-35860950 | MS.gene045787:CDS |
| AGCAAATGAAAGAGAAGCAC+AGG | 0.558467 | 2.1:-35866121 | MS.gene045787:intron |
| GTGAAAACAGGGTAGAGGCT+TGG | 0.558768 | 2.1:+35865403 | None:intergenic |
| TTTGTTCGACTGAGACCTGT+AGG | 0.558930 | 2.1:+35861468 | None:intergenic |
| GCAATTGGAAGCAGTATGAA+AGG | 0.565406 | 2.1:-35864836 | MS.gene045787:CDS |
| ACTACGCAGGAAAATTTCCA+TGG | 0.568905 | 2.1:-35861255 | MS.gene045787:intron |
| ACAGCTCTACAAGCGGCTCT+CGG | 0.572583 | 2.1:+35860998 | None:intergenic |
| AAATGTGGAAAACTTTATGC+GGG | 0.580785 | 2.1:-35866306 | MS.gene045787:CDS |
| GTCATGAGACTGCTGTTCCA+AGG | 0.585552 | 2.1:-35866271 | MS.gene045787:CDS |
| GACCTGTGAAAACAGGGTAG+AGG | 0.588751 | 2.1:+35865398 | None:intergenic |
| TTCAGGACTGTTAAGCGGCT+AGG | 0.603180 | 2.1:-35867829 | MS.gene045787:intron |
| TAAATGTGGAAAACTTTATG+CGG | 0.606027 | 2.1:-35866307 | MS.gene045787:CDS |
| TAACTTGTACGGGGATAATG+TGG | 0.606557 | 2.1:-35867704 | MS.gene045787:CDS |
| TCCATAGTTGTCCAACACCA+TGG | 0.611972 | 2.1:+35861238 | None:intergenic |
| TACCAGAACACGAGGAACCA+TGG | 0.616225 | 2.1:+35860933 | None:intergenic |
| GTCAACGGCATATTACAGAA+TGG | 0.617483 | 2.1:-35863526 | MS.gene045787:CDS |
| TCGGGGCTATGAAGTAAATG+TGG | 0.618030 | 2.1:-35866321 | MS.gene045787:CDS |
| AAATCAGACCTGTGAAAACA+GGG | 0.618937 | 2.1:+35865392 | None:intergenic |
| ATATATGACAGGGCATGGAG+GGG | 0.619576 | 2.1:-35866207 | MS.gene045787:CDS |
| ACAAAGTATTGGCCATATGT+CGG | 0.620535 | 2.1:+35867945 | None:intergenic |
| TGGCAGTGCTCCACCACCGA+GGG | 0.623775 | 2.1:+35860953 | None:intergenic |
| ACAGAGGAGCCATTGAAACA+AGG | 0.625908 | 2.1:+35861157 | None:intergenic |
| ACATAATACAGCTCTACAAG+CGG | 0.628713 | 2.1:+35860991 | None:intergenic |
| TCACATTCAGGACTGTTAAG+CGG | 0.633485 | 2.1:-35867834 | MS.gene045787:intron |
| GGCTAGGAATACCTGATGAG+AGG | 0.637721 | 2.1:-35867813 | MS.gene045787:CDS |
| ACTCATGTTAGCAGATGACA+TGG | 0.646036 | 2.1:-35867785 | MS.gene045787:CDS |
| TAAGGAGCTGCTGATAATGG+TGG | 0.649855 | 2.1:-35865433 | MS.gene045787:CDS |
| CCATAGACTTAACTTGTACG+GGG | 0.681153 | 2.1:-35867713 | MS.gene045787:CDS |
| CACACAGAAATTATCAACAG+AGG | 0.686544 | 2.1:+35861141 | None:intergenic |
| ATTCCTCAGGTAGATTATCG+GGG | 0.689658 | 2.1:-35866338 | MS.gene045787:intron |
| CTTGTACGGGGATAATGTGG+AGG | 0.689868 | 2.1:-35867701 | MS.gene045787:intron |
| CTTAGTTTACCAGAAACGAG+AGG | 0.703428 | 2.1:+35868244 | None:intergenic |
| ATGCGCTTGAATATACAATG+AGG | 0.705316 | 2.1:+35861025 | None:intergenic |
| TATAGCATTACCAGAACACG+AGG | 0.716706 | 2.1:+35860925 | None:intergenic |
| ATGGCAGTGCTCCACCACCG+AGG | 0.717395 | 2.1:+35860952 | None:intergenic |
| ATATCAACGACATTTAGAGG+AGG | 0.726142 | 2.1:-35863499 | MS.gene045787:intron |
| TTATATATGACAGGGCATGG+AGG | 0.727195 | 2.1:-35866209 | MS.gene045787:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 35860822 | 35868378 | 35860822 | ID=MS.gene045787 |
| chr2.1 | mRNA | 35860822 | 35868378 | 35860822 | ID=MS.gene045787.t1;Parent=MS.gene045787 |
| chr2.1 | exon | 35868254 | 35868378 | 35868254 | ID=MS.gene045787.t1.exon1;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35868254 | 35868378 | 35868254 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| chr2.1 | exon | 35867935 | 35867976 | 35867935 | ID=MS.gene045787.t1.exon2;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35867935 | 35867976 | 35867935 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| chr2.1 | exon | 35867702 | 35867846 | 35867702 | ID=MS.gene045787.t1.exon3;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35867702 | 35867846 | 35867702 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| chr2.1 | exon | 35866122 | 35866351 | 35866122 | ID=MS.gene045787.t1.exon4;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35866122 | 35866351 | 35866122 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| chr2.1 | exon | 35865401 | 35865458 | 35865401 | ID=MS.gene045787.t1.exon5;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35865401 | 35865458 | 35865401 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| chr2.1 | exon | 35864802 | 35864879 | 35864802 | ID=MS.gene045787.t1.exon6;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35864802 | 35864879 | 35864802 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| chr2.1 | exon | 35863923 | 35864011 | 35863923 | ID=MS.gene045787.t1.exon7;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35863923 | 35864011 | 35863923 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| chr2.1 | exon | 35863500 | 35863581 | 35863500 | ID=MS.gene045787.t1.exon8;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35863500 | 35863581 | 35863500 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| chr2.1 | exon | 35861354 | 35861545 | 35861354 | ID=MS.gene045787.t1.exon9;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35861354 | 35861545 | 35861354 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| chr2.1 | exon | 35861146 | 35861268 | 35861146 | ID=MS.gene045787.t1.exon10;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35861146 | 35861268 | 35861146 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| chr2.1 | exon | 35860936 | 35861049 | 35860936 | ID=MS.gene045787.t1.exon11;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35860936 | 35861049 | 35860936 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| chr2.1 | exon | 35860822 | 35860851 | 35860822 | ID=MS.gene045787.t1.exon12;Parent=MS.gene045787.t1 |
| chr2.1 | CDS | 35860822 | 35860851 | 35860822 | ID=cds.MS.gene045787.t1;Parent=MS.gene045787.t1 |
| Gene Sequence |
| Protein sequence |