Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81030.t1 | AES65899.2 | 97.1 | 341 | 10 | 0 | 1 | 341 | 22 | 362 | 1.20E-186 | 662.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81030.t1 | P49018 | 55.2 | 261 | 117 | 0 | 1 | 261 | 55 | 315 | 1.3e-80 | 301.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81030.t1 | G7IQL5 | 97.1 | 341 | 10 | 0 | 1 | 341 | 22 | 362 | 8.5e-187 | 662.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049807 | MS.gene81030 | 0.808546 | 2.94E-50 | -1.69E-46 |
MS.gene051885 | MS.gene81030 | 0.833208 | 6.09E-56 | -1.69E-46 |
MS.gene052609 | MS.gene81030 | 0.800064 | 1.72E-48 | -1.69E-46 |
MS.gene053143 | MS.gene81030 | 0.836556 | 8.73E-57 | -1.69E-46 |
MS.gene054554 | MS.gene81030 | 0.805722 | 1.16E-49 | -1.69E-46 |
MS.gene054585 | MS.gene81030 | 0.811535 | 6.67E-51 | -1.69E-46 |
MS.gene054824 | MS.gene81030 | 0.810746 | 9.89E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene91904 | MS.gene81030 | PPI |
MS.gene49698 | MS.gene81030 | PPI |
MS.gene072281 | MS.gene81030 | PPI |
MS.gene81030 | MS.gene78507 | PPI |
MS.gene81030 | MS.gene030590 | PPI |
MS.gene81030 | MS.gene074024 | PPI |
MS.gene81030 | MS.gene70190 | PPI |
MS.gene072282 | MS.gene81030 | PPI |
MS.gene81030 | MS.gene032837 | PPI |
MS.gene81030 | MS.gene022880 | PPI |
MS.gene022879 | MS.gene81030 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81030.t1 | MTR_2g058550 | 97.067 | 341 | 10 | 0 | 1 | 341 | 60 | 400 | 0.0 | 687 |
MS.gene81030.t1 | MTR_2g058550 | 97.067 | 341 | 10 | 0 | 1 | 341 | 22 | 362 | 0.0 | 684 |
MS.gene81030.t1 | MTR_1g085630 | 77.778 | 180 | 40 | 0 | 1 | 180 | 45 | 224 | 1.31e-100 | 301 |
MS.gene81030.t1 | MTR_3g449460 | 44.037 | 109 | 44 | 2 | 271 | 379 | 1 | 92 | 7.79e-18 | 78.6 |
MS.gene81030.t1 | MTR_7g079140 | 31.169 | 154 | 103 | 3 | 2 | 154 | 65 | 216 | 2.96e-16 | 80.5 |
MS.gene81030.t1 | MTR_3g104120 | 28.758 | 153 | 106 | 3 | 8 | 159 | 73 | 223 | 3.81e-15 | 77.0 |
MS.gene81030.t1 | MTR_1g016780 | 28.571 | 154 | 107 | 3 | 2 | 154 | 76 | 227 | 5.65e-15 | 76.6 |
MS.gene81030.t1 | MTR_7g032230 | 28.409 | 176 | 119 | 5 | 2 | 173 | 52 | 224 | 5.79e-15 | 76.6 |
MS.gene81030.t1 | MTR_3g449450 | 65.455 | 55 | 2 | 1 | 179 | 233 | 9 | 46 | 6.28e-14 | 66.2 |
MS.gene81030.t1 | MTR_7g075310 | 29.221 | 154 | 106 | 3 | 2 | 154 | 64 | 215 | 1.52e-13 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81030.t1 | AT1G08750 | 72.674 | 344 | 89 | 3 | 1 | 342 | 44 | 384 | 1.01e-176 | 497 |
MS.gene81030.t1 | AT1G08750 | 72.674 | 344 | 89 | 3 | 1 | 342 | 44 | 384 | 1.01e-176 | 497 |
MS.gene81030.t1 | AT1G08750 | 72.674 | 344 | 89 | 3 | 1 | 342 | 44 | 384 | 1.01e-176 | 497 |
MS.gene81030.t1 | AT2G25940 | 31.250 | 160 | 105 | 4 | 2 | 159 | 62 | 218 | 6.37e-18 | 85.5 |
MS.gene81030.t1 | AT4G32940 | 30.000 | 160 | 107 | 4 | 2 | 159 | 77 | 233 | 1.17e-15 | 79.0 |
MS.gene81030.t1 | AT3G20210 | 26.452 | 155 | 109 | 4 | 2 | 154 | 64 | 215 | 6.43e-14 | 73.6 |
MS.gene81030.t1 | AT1G62710 | 25.316 | 158 | 107 | 3 | 2 | 154 | 69 | 220 | 1.46e-13 | 72.4 |
Find 73 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCGTTGACATCAACAAATT+TGG | 0.211724 | 2.1:+35834422 | None:intergenic |
ACCTGAAATTAAAATGCTTT+TGG | 0.217511 | 2.1:-35832316 | MS.gene81030:CDS |
CCCCGTACAAGTTAAGTCTA+TGG | 0.300091 | 2.1:+35838595 | None:intergenic |
GCTCCATTCACCAGGTGTTT+TGG | 0.305889 | 2.1:-35835740 | MS.gene81030:CDS |
TGCCATGGTTCCTCGTGTTC+TGG | 0.313516 | 2.1:-35831817 | MS.gene81030:intron |
AATGTGAATGATTAGGTTTA+AGG | 0.316044 | 2.1:-35836333 | MS.gene81030:intron |
TTGCTATGGCCTTGTTTCAA+TGG | 0.331401 | 2.1:-35832048 | MS.gene81030:CDS |
CCAATACTTTGTCATTGTAT+AGG | 0.337757 | 2.1:-35838816 | MS.gene81030:intron |
AACTTTATGCGGGTACTAAC+AGG | 0.356403 | 2.1:-35837178 | MS.gene81030:CDS |
TTCATCACTAAGAAGTCGTT+TGG | 0.360064 | 2.1:+35837129 | None:intergenic |
GAAATCAGACCTGTGAAAAC+AGG | 0.360804 | 2.1:+35836273 | None:intergenic |
GTTTAAGGAGCTGCTGATAA+TGG | 0.378305 | 2.1:-35836318 | MS.gene81030:CDS |
CCTATATCAACGACATTTAG+AGG | 0.382381 | 2.1:-35834384 | MS.gene81030:CDS |
CAATTCCTCAGGTAGATTAT+CGG | 0.383709 | 2.1:-35837222 | MS.gene81030:intron |
TCCATGGTGTTGGACAACTA+TGG | 0.384279 | 2.1:-35832121 | MS.gene81030:CDS |
CCTCTAAATGTCGTTGATAT+AGG | 0.389044 | 2.1:+35834384 | None:intergenic |
AATTCCTCAGGTAGATTATC+GGG | 0.407761 | 2.1:-35837221 | MS.gene81030:intron |
TTGGATTATATGAATTGAAA+AGG | 0.416779 | 2.1:+35834441 | None:intergenic |
TGTTATATTTACAGCTTTGG+TGG | 0.427170 | 2.1:-35831725 | MS.gene81030:intron |
ACCATAGACTTAACTTGTAC+GGG | 0.441211 | 2.1:-35838596 | MS.gene81030:CDS |
CTAAGAAGTCGTTTGGACCT+TGG | 0.451139 | 2.1:+35837136 | None:intergenic |
AACCATAGACTTAACTTGTA+CGG | 0.460660 | 2.1:-35838597 | MS.gene81030:CDS |
TTGCCAAAACACCTGGTGAA+TGG | 0.478492 | 2.1:+35835737 | None:intergenic |
CAGGAAAATTTCCATGGTGT+TGG | 0.484436 | 2.1:-35832131 | MS.gene81030:CDS |
ATGAGTATGATCCTCTCATC+AGG | 0.492372 | 2.1:+35838684 | None:intergenic |
CTTCCAATTGCCAAAACACC+TGG | 0.500408 | 2.1:+35835730 | None:intergenic |
ACACTCTTGCCTTCTTTGAG+AGG | 0.501916 | 2.1:-35834837 | MS.gene81030:CDS |
TCCAAATTTGTTGATGTCAA+CGG | 0.508329 | 2.1:-35834423 | MS.gene81030:CDS |
TATATTCAGCCTCTCAAAGA+AGG | 0.515894 | 2.1:+35834828 | None:intergenic |
CCTATACAATGACAAAGTAT+TGG | 0.519127 | 2.1:+35838816 | None:intergenic |
TCTTGACAGCTCCATTCACC+AGG | 0.520421 | 2.1:-35835748 | MS.gene81030:intron |
GAACTCATATTCGCATCACT+TGG | 0.522926 | 2.1:-35835692 | MS.gene81030:CDS |
ATGACAATGCTTCATTGAGC+AGG | 0.525315 | 2.1:-35834804 | MS.gene81030:intron |
AAACGACTTCTTAGTGATGA+AGG | 0.525949 | 2.1:-35837127 | MS.gene81030:CDS |
TATATATGACAGGGCATGGA+GGG | 0.527970 | 2.1:-35837090 | MS.gene81030:CDS |
AAACAGGGTAGAGGCTTGGC+AGG | 0.531922 | 2.1:+35836289 | None:intergenic |
TTTGAGAAACTCTGTTGATG+AGG | 0.537388 | 2.1:-35832262 | MS.gene81030:CDS |
TACACACTGACTCAGCCTAC+AGG | 0.543853 | 2.1:-35832365 | MS.gene81030:CDS |
TCGGTGGTGGAGCACTGCCA+TGG | 0.552368 | 2.1:-35831832 | MS.gene81030:CDS |
AGCAAATGAAAGAGAAGCAC+AGG | 0.558467 | 2.1:-35837003 | MS.gene81030:intron |
GTGAAAACAGGGTAGAGGCT+TGG | 0.558768 | 2.1:+35836285 | None:intergenic |
TTTGTTCGACTGAGACCTGT+AGG | 0.558930 | 2.1:+35832350 | None:intergenic |
GCAATTGGAAGCAGTATGAA+AGG | 0.565406 | 2.1:-35835718 | MS.gene81030:CDS |
ACTACGCAGGAAAATTTCCA+TGG | 0.568905 | 2.1:-35832137 | MS.gene81030:intron |
ACAGCTCTACAAGCGGCTCT+CGG | 0.572583 | 2.1:+35831880 | None:intergenic |
AAATGTGGAAAACTTTATGC+GGG | 0.580785 | 2.1:-35837188 | MS.gene81030:CDS |
GTCATGAGACTGCTGTTCCA+AGG | 0.585552 | 2.1:-35837153 | MS.gene81030:CDS |
GACCTGTGAAAACAGGGTAG+AGG | 0.588751 | 2.1:+35836280 | None:intergenic |
TTCAGGACTGTTAAGCGGCT+AGG | 0.603180 | 2.1:-35838711 | MS.gene81030:intron |
TAAATGTGGAAAACTTTATG+CGG | 0.606027 | 2.1:-35837189 | MS.gene81030:CDS |
TAACTTGTACGGGGATAATG+TGG | 0.606557 | 2.1:-35838586 | MS.gene81030:CDS |
TCCATAGTTGTCCAACACCA+TGG | 0.611972 | 2.1:+35832120 | None:intergenic |
TACCAGAACACGAGGAACCA+TGG | 0.616225 | 2.1:+35831815 | None:intergenic |
GTCAACGGCATATTACAGAA+TGG | 0.617483 | 2.1:-35834408 | MS.gene81030:CDS |
TCGGGGCTATGAAGTAAATG+TGG | 0.618030 | 2.1:-35837203 | MS.gene81030:CDS |
AAATCAGACCTGTGAAAACA+GGG | 0.618937 | 2.1:+35836274 | None:intergenic |
ATATATGACAGGGCATGGAG+GGG | 0.619576 | 2.1:-35837089 | MS.gene81030:CDS |
TGGCAGTGCTCCACCACCGA+GGG | 0.623775 | 2.1:+35831835 | None:intergenic |
ACAGAGGAGCCATTGAAACA+AGG | 0.625908 | 2.1:+35832039 | None:intergenic |
ACATAATACAGCTCTACAAG+CGG | 0.628713 | 2.1:+35831873 | None:intergenic |
TCACATTCAGGACTGTTAAG+CGG | 0.633485 | 2.1:-35838716 | MS.gene81030:intron |
GGCTAGGAATACCTGATGAG+AGG | 0.637721 | 2.1:-35838695 | MS.gene81030:CDS |
ACTCATGTTAGCAGATGACA+TGG | 0.646036 | 2.1:-35838667 | MS.gene81030:CDS |
TAAGGAGCTGCTGATAATGG+TGG | 0.649855 | 2.1:-35836315 | MS.gene81030:CDS |
CCATAGACTTAACTTGTACG+GGG | 0.681153 | 2.1:-35838595 | MS.gene81030:CDS |
CACACAGAAATTATCAACAG+AGG | 0.686544 | 2.1:+35832023 | None:intergenic |
ATTCCTCAGGTAGATTATCG+GGG | 0.689658 | 2.1:-35837220 | MS.gene81030:intron |
CTTGTACGGGGATAATGTGG+AGG | 0.689868 | 2.1:-35838583 | MS.gene81030:intron |
ATGCGCTTGAATATACAATG+AGG | 0.705316 | 2.1:+35831907 | None:intergenic |
TATAGCATTACCAGAACACG+AGG | 0.716706 | 2.1:+35831807 | None:intergenic |
ATGGCAGTGCTCCACCACCG+AGG | 0.717395 | 2.1:+35831834 | None:intergenic |
ATATCAACGACATTTAGAGG+AGG | 0.726142 | 2.1:-35834381 | MS.gene81030:intron |
TTATATATGACAGGGCATGG+AGG | 0.727195 | 2.1:-35837091 | MS.gene81030:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 35831704 | 35838842 | 35831704 | ID=MS.gene81030 |
chr2.1 | mRNA | 35831704 | 35838842 | 35831704 | ID=MS.gene81030.t1;Parent=MS.gene81030 |
chr2.1 | exon | 35838817 | 35838842 | 35838817 | ID=MS.gene81030.t1.exon1;Parent=MS.gene81030.t1 |
chr2.1 | CDS | 35838817 | 35838842 | 35838817 | ID=cds.MS.gene81030.t1;Parent=MS.gene81030.t1 |
chr2.1 | exon | 35838584 | 35838728 | 35838584 | ID=MS.gene81030.t1.exon2;Parent=MS.gene81030.t1 |
chr2.1 | CDS | 35838584 | 35838728 | 35838584 | ID=cds.MS.gene81030.t1;Parent=MS.gene81030.t1 |
chr2.1 | exon | 35837004 | 35837233 | 35837004 | ID=MS.gene81030.t1.exon3;Parent=MS.gene81030.t1 |
chr2.1 | CDS | 35837004 | 35837233 | 35837004 | ID=cds.MS.gene81030.t1;Parent=MS.gene81030.t1 |
chr2.1 | exon | 35836283 | 35836340 | 35836283 | ID=MS.gene81030.t1.exon4;Parent=MS.gene81030.t1 |
chr2.1 | CDS | 35836283 | 35836340 | 35836283 | ID=cds.MS.gene81030.t1;Parent=MS.gene81030.t1 |
chr2.1 | exon | 35835684 | 35835761 | 35835684 | ID=MS.gene81030.t1.exon5;Parent=MS.gene81030.t1 |
chr2.1 | CDS | 35835684 | 35835761 | 35835684 | ID=cds.MS.gene81030.t1;Parent=MS.gene81030.t1 |
chr2.1 | exon | 35834805 | 35834893 | 35834805 | ID=MS.gene81030.t1.exon6;Parent=MS.gene81030.t1 |
chr2.1 | CDS | 35834805 | 35834893 | 35834805 | ID=cds.MS.gene81030.t1;Parent=MS.gene81030.t1 |
chr2.1 | exon | 35834382 | 35834463 | 35834382 | ID=MS.gene81030.t1.exon7;Parent=MS.gene81030.t1 |
chr2.1 | CDS | 35834382 | 35834463 | 35834382 | ID=cds.MS.gene81030.t1;Parent=MS.gene81030.t1 |
chr2.1 | exon | 35832236 | 35832427 | 35832236 | ID=MS.gene81030.t1.exon8;Parent=MS.gene81030.t1 |
chr2.1 | CDS | 35832236 | 35832427 | 35832236 | ID=cds.MS.gene81030.t1;Parent=MS.gene81030.t1 |
chr2.1 | exon | 35832028 | 35832150 | 35832028 | ID=MS.gene81030.t1.exon9;Parent=MS.gene81030.t1 |
chr2.1 | CDS | 35832028 | 35832150 | 35832028 | ID=cds.MS.gene81030.t1;Parent=MS.gene81030.t1 |
chr2.1 | exon | 35831818 | 35831931 | 35831818 | ID=MS.gene81030.t1.exon10;Parent=MS.gene81030.t1 |
chr2.1 | CDS | 35831818 | 35831931 | 35831818 | ID=cds.MS.gene81030.t1;Parent=MS.gene81030.t1 |
chr2.1 | exon | 35831704 | 35831733 | 35831704 | ID=MS.gene81030.t1.exon11;Parent=MS.gene81030.t1 |
chr2.1 | CDS | 35831704 | 35831733 | 35831704 | ID=cds.MS.gene81030.t1;Parent=MS.gene81030.t1 |
Gene Sequence |
Protein sequence |