AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034496

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034496.t1 MTR_1g054035 97.656 384 9 0 1 384 1 384 0.0 782
MS.gene034496.t1 MTR_7g093200 79.427 384 77 2 1 383 51 433 0.0 652
MS.gene034496.t1 MTR_1g111880 68.750 384 98 3 1 384 5 366 0.0 526
MS.gene034496.t1 MTR_5g071170 38.066 331 185 7 18 345 30 343 4.66e-70 225
MS.gene034496.t1 MTR_7g068780 39.009 323 177 8 26 345 92 397 1.66e-64 212
MS.gene034496.t1 MTR_4g015630 38.080 323 180 8 26 345 86 391 4.19e-64 211
MS.gene034496.t1 MTR_3g464330 38.080 323 180 6 26 345 29 334 2.28e-63 207
MS.gene034496.t1 MTR_7g068780 33.948 271 156 7 26 295 92 340 2.04e-37 138
MS.gene034496.t1 MTR_4g130980 24.762 315 209 9 33 344 105 394 2.83e-21 95.5
MS.gene034496.t1 MTR_2g460790 24.642 349 220 11 33 371 106 421 3.57e-21 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034496.t1 AT3G12120 75.521 384 93 1 1 384 1 383 0.0 618
MS.gene034496.t1 AT3G12120 75.521 384 93 1 1 384 1 383 0.0 618
MS.gene034496.t1 AT3G11170 38.279 337 188 8 12 345 76 395 1.88e-68 223
MS.gene034496.t1 AT2G29980 39.628 323 175 7 26 345 28 333 5.15e-68 220
MS.gene034496.t1 AT5G05580 37.243 341 195 7 8 345 64 388 4.11e-65 214
MS.gene034496.t1 AT5G05580 35.736 333 195 7 6 335 62 378 8.30e-59 196
MS.gene034496.t1 AT2G29980 34.672 274 156 6 26 298 28 279 2.34e-42 150
MS.gene034496.t1 AT4G30950 24.355 349 221 12 10 344 76 395 2.16e-19 89.7

Find 108 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGGTTATTTGTGTTTA+TGG 0.112540 1.1:+40580285 MS.gene034496:CDS
TACTTAGCCTTCAATGTTTC+AGG 0.146010 1.1:+40580117 MS.gene034496:CDS
ATTTGGCGTGGCCCGTTTAT+TGG 0.151456 1.1:+40579788 MS.gene034496:CDS
AAAGGCTGTGAAACCAATTT+TGG 0.151699 1.1:+40580539 MS.gene034496:CDS
TCCACATAACCTCTCATATT+TGG 0.215212 1.1:+40579771 MS.gene034496:CDS
TGATAATATTCACCCAAAAT+TGG 0.233269 1.1:-40580552 None:intergenic
TCTTTCACGATCTGAGTAAA+TGG 0.246402 1.1:-40580184 None:intergenic
GCAACTGTGGATAGAGATTA+TGG 0.258170 1.1:+40580423 MS.gene034496:CDS
GTGAGATTAAAGGTGTTTAT+TGG 0.270914 1.1:+40580652 MS.gene034496:CDS
CCTTTGTGATGGAGGATTAG+AGG 0.278255 1.1:-40579557 None:intergenic
CGGGCTTTACCGTCTTGTTT+TGG 0.295294 1.1:+40580251 MS.gene034496:CDS
TTTGGCGTGGCCCGTTTATT+GGG 0.305802 1.1:+40579789 MS.gene034496:CDS
CTCCACATAGCTTTGTAAAT+AGG 0.306944 1.1:-40580588 None:intergenic
GATGAAGGTAGTGAGATTAA+AGG 0.339285 1.1:+40580642 MS.gene034496:CDS
ATTCCACTTCTTATTGTCAA+TGG 0.340841 1.1:+40580309 MS.gene034496:CDS
ATAGGAAAATGATCGAATTA+AGG 0.343029 1.1:-40579683 None:intergenic
GGATTCTCGCAGTTTCTTAC+GGG 0.352225 1.1:+40580232 MS.gene034496:CDS
TCCTTGGATGGCCCAATAAA+CGG 0.372474 1.1:-40579800 None:intergenic
CAAATTTATGTTTCAGATGC+CGG 0.378498 1.1:+40580210 MS.gene034496:CDS
GGGATTCTCGCAGTTTCTTA+CGG 0.381488 1.1:+40580231 MS.gene034496:CDS
ATGCATTCTAACCGGACTTT+GGG 0.385924 1.1:+40579822 MS.gene034496:CDS
TGTTCTTCATTCATGCCTCT+TGG 0.389134 1.1:+40579912 MS.gene034496:CDS
TCTGAGTAAATGGGTCCATA+TGG 0.415261 1.1:-40580174 None:intergenic
ATGCATTTAGTAATTATCAA+TGG 0.415395 1.1:+40579869 MS.gene034496:CDS
GATGCATTCTAACCGGACTT+TGG 0.420377 1.1:+40579821 MS.gene034496:CDS
TTGACTTCTCCAAGAGTGAA+TGG 0.422551 1.1:-40579628 None:intergenic
TTCCACTTCTTATTGTCAAT+GGG 0.423982 1.1:+40580310 MS.gene034496:CDS
TTTGGCCCAAGGTTTGAATT+GGG 0.432901 1.1:+40580269 MS.gene034496:CDS
AAAGTAATTTGTGGCTATGT+AGG 0.434971 1.1:-40579740 None:intergenic
AAATAACCCAATTCAAACCT+TGG 0.437716 1.1:-40580275 None:intergenic
CAATGGGTCGATGATTTAGT+TGG 0.443927 1.1:+40579886 MS.gene034496:CDS
TGCATTTAGTAATTATCAAT+GGG 0.449274 1.1:+40579870 MS.gene034496:CDS
CCTTGGATGGCCCAATAAAC+GGG 0.460124 1.1:-40579799 None:intergenic
GAATCATAATGAGGCAAAGC+AGG 0.463757 1.1:-40580369 None:intergenic
AGCTATGTGGAGAGAGGCTA+AGG 0.464534 1.1:+40580599 MS.gene034496:CDS
ATCCAAGGATGCATTCTAAC+CGG 0.466935 1.1:+40579814 MS.gene034496:CDS
TCATTATGATTCTACCGAAT+GGG 0.467077 1.1:+40580380 MS.gene034496:CDS
ATGATTCTACCGAATGGGAT+TGG 0.467298 1.1:+40580385 MS.gene034496:CDS
ACAAAACCACCATTCACTCT+TGG 0.469303 1.1:+40579619 MS.gene034496:CDS
GCCTCACATTACGACCCATA+TGG 0.473488 1.1:+40580159 MS.gene034496:CDS
AAATTTATGTTTCAGATGCC+GGG 0.491484 1.1:+40580211 MS.gene034496:CDS
GGATTGGATGAGAGGTGCTT+TGG 0.492368 1.1:+40580401 MS.gene034496:CDS
CTTTCACGATCTGAGTAAAT+GGG 0.494362 1.1:-40580183 None:intergenic
CTCATTATGATTCTACCGAA+TGG 0.500841 1.1:+40580379 MS.gene034496:CDS
GTAGGCAAGGATTGATGCTA+TGG 0.503319 1.1:-40579722 None:intergenic
ACCTCTCATCCAATCCCATT+CGG 0.506080 1.1:-40580394 None:intergenic
GTCCGGTTAGAATGCATCCT+TGG 0.507186 1.1:-40579816 None:intergenic
CCCGTTTATTGGGCCATCCA+AGG 0.510594 1.1:+40579799 MS.gene034496:CDS
AATAACCCAATTCAAACCTT+GGG 0.510943 1.1:-40580274 None:intergenic
GGTTAGAATGCATCCTTGGA+TGG 0.514645 1.1:-40579812 None:intergenic
CTTTATGTTGAGGCTGATGA+AGG 0.523534 1.1:+40580627 MS.gene034496:CDS
GTGTGCAATGACCCAAAGTC+CGG 0.524456 1.1:-40579833 None:intergenic
ATCTTCCTAGTGGGTTGTCA+AGG 0.527107 1.1:-40580053 None:intergenic
GCCAAATATGAGAGGTTATG+TGG 0.527111 1.1:-40579772 None:intergenic
AAGGGTATGAAAGTAATTTG+TGG 0.538654 1.1:-40579749 None:intergenic
CTCACCATAACACTCACTCT+TGG 0.540480 1.1:+40580084 MS.gene034496:CDS
GGGCCGACCTGAAACATTGA+AGG 0.545937 1.1:-40580124 None:intergenic
CTGAGTAAATGGGTCCATAT+GGG 0.547451 1.1:-40580173 None:intergenic
TTTCAGGTCGGCCCTACGAT+AGG 0.551564 1.1:+40580133 MS.gene034496:CDS
CCATAACACTCACTCTTGGT+TGG 0.553191 1.1:+40580088 MS.gene034496:CDS
GCTTCCATTGCATGATAATG+AGG 0.557178 1.1:-40580513 None:intergenic
TCATGCAATGGAAGCTACAA+AGG 0.560560 1.1:+40580521 MS.gene034496:CDS
GGTAAGGTCAACAATGACAT+AGG 0.560671 1.1:-40579701 None:intergenic
GTAAGAAACTGCGAGAATCC+CGG 0.566019 1.1:-40580229 None:intergenic
AACCCATTGACAATAAGAAG+TGG 0.571839 1.1:-40580312 None:intergenic
CCAACCAAGAGTGAGTGTTA+TGG 0.573998 1.1:-40580088 None:intergenic
AATATGAGAGGTTATGTGGA+AGG 0.574811 1.1:-40579768 None:intergenic
GGTTGTGTGCAAATGGGAGC+AGG 0.577483 1.1:+40579526 None:intergenic
TAAGGAGTGTCTTTATGTTG+AGG 0.578516 1.1:+40580617 MS.gene034496:CDS
ACCGAATGGGATTGGATGAG+AGG 0.579320 1.1:+40580393 MS.gene034496:CDS
CAAGGATTGATGCTATGGTA+AGG 0.584896 1.1:-40579717 None:intergenic
CGTCGCCACCACTCTAACAC+AGG 0.590961 1.1:+40579964 MS.gene034496:CDS
AATTTGTGGCTATGTAGGCA+AGG 0.591021 1.1:-40579735 None:intergenic
ATTGATAATTACTAAATGCA+TGG 0.593230 1.1:-40579867 None:intergenic
GAATGATGAACATTTGAAGA+GGG 0.593720 1.1:+40579588 MS.gene034496:CDS
ACATTGAAGGCTAAGTAAAG+TGG 0.595170 1.1:-40580111 None:intergenic
CAAGAGAACCTGTGTTAGAG+TGG 0.596352 1.1:-40579972 None:intergenic
TGGGTCATTGCACACGAATG+CGG 0.599338 1.1:+40579841 MS.gene034496:CDS
CTCCTATTTACAAAGCTATG+TGG 0.601766 1.1:+40580586 MS.gene034496:CDS
AAATACCTTGACAACCCACT+AGG 0.604712 1.1:+40580048 MS.gene034496:CDS
TAGCCTTCAATGTTTCAGGT+CGG 0.609244 1.1:+40580121 MS.gene034496:CDS
TATGCCTCATTATCATGCAA+TGG 0.610036 1.1:+40580509 MS.gene034496:CDS
TCCATATGGGTCGTAATGTG+AGG 0.611830 1.1:-40580160 None:intergenic
AGAATGATGAACATTTGAAG+AGG 0.613057 1.1:+40579587 MS.gene034496:CDS
ATATGAGAGGTTATGTGGAA+GGG 0.613172 1.1:-40579767 None:intergenic
GTGTAAGAAATCTTCCTAGT+GGG 0.619593 1.1:-40580062 None:intergenic
AGGTTCTCTTGAACGTGACG+AGG 0.626874 1.1:+40579984 MS.gene034496:CDS
CATTCGGTAGAATCATAATG+AGG 0.627483 1.1:-40580378 None:intergenic
ACTTCTCCAAGAGTGAATGG+TGG 0.629325 1.1:-40579625 None:intergenic
GAGAGGTGCTTTGGCAACTG+TGG 0.636324 1.1:+40580410 MS.gene034496:CDS
GAGAACCTGTGTTAGAGTGG+TGG 0.637244 1.1:-40579969 None:intergenic
AGTGTAAGAAATCTTCCTAG+TGG 0.637501 1.1:-40580063 None:intergenic
ATGTGAGGCGAACCTATCGT+AGG 0.637515 1.1:-40580145 None:intergenic
TTACAAAGCTATGTGGAGAG+AGG 0.639770 1.1:+40580593 MS.gene034496:CDS
AGATTATGGAATTCTTAACA+AGG 0.642924 1.1:+40580437 MS.gene034496:CDS
AACCTTGGGCCAAAACAAGA+CGG 0.646867 1.1:-40580260 None:intergenic
AAAATGATCGAATTAAGGAA+CGG 0.647354 1.1:-40579678 None:intergenic
TGTGAGGCGAACCTATCGTA+GGG 0.648455 1.1:-40580144 None:intergenic
GAACGGTTAAAACAATGTGG+TGG 0.652401 1.1:-40579661 None:intergenic
CCTCTAATCCTCCATCACAA+AGG 0.653348 1.1:+40579557 MS.gene034496:CDS
AGAGGCATGAATGAAGAACA+AGG 0.653383 1.1:-40579909 None:intergenic
TAACATAACTGATACTCATG+TGG 0.653989 1.1:+40580467 MS.gene034496:CDS
ATAACCTCTCATATTTGGCG+TGG 0.658374 1.1:+40579776 MS.gene034496:CDS
AATCATAATGAGGCAAAGCA+GGG 0.659916 1.1:-40580368 None:intergenic
CGGGCCACGCCAAATATGAG+AGG 0.665310 1.1:-40579780 None:intergenic
GATAATTACTAAATGCATGG+TGG 0.685300 1.1:-40579864 None:intergenic
AAGGAACGGTTAAAACAATG+TGG 0.703232 1.1:-40579664 None:intergenic
TGTGTGCAAATGGGAGCAGG+TGG 0.715963 1.1:+40579529 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGCATTTAGTAATTATCAA+TGG + chr1.1:40579869-40579888 MS.gene034496:CDS 20.0%
!! TGCATTTAGTAATTATCAAT+GGG + chr1.1:40579870-40579889 MS.gene034496:CDS 20.0%
!!! ATTGATAATTACTAAATGCA+TGG - chr1.1:40579870-40579889 None:intergenic 20.0%
!!! GTGAATATTATCATTTTGAT+GGG + chr1.1:40580562-40580581 MS.gene034496:CDS 20.0%
! AAAATGATCGAATTAAGGAA+CGG - chr1.1:40579681-40579700 None:intergenic 25.0%
! AATTGGGTTATTTGTGTTTA+TGG + chr1.1:40580285-40580304 MS.gene034496:CDS 25.0%
! AGAAAAAATCTCAAATTGGT+TGG + chr1.1:40580019-40580038 MS.gene034496:CDS 25.0%
! AGATTATGGAATTCTTAACA+AGG + chr1.1:40580437-40580456 MS.gene034496:CDS 25.0%
! ATAGGAAAATGATCGAATTA+AGG - chr1.1:40579686-40579705 None:intergenic 25.0%
! CCTAAGAAAAAATCTCAAAT+TGG + chr1.1:40580015-40580034 MS.gene034496:CDS 25.0%
! CTATATTTCCACGAAAAATA+AGG - chr1.1:40579940-40579959 None:intergenic 25.0%
! TGATAATATTCACCCAAAAT+TGG - chr1.1:40580555-40580574 None:intergenic 25.0%
!! GGTGAATATTATCATTTTGA+TGG + chr1.1:40580561-40580580 MS.gene034496:CDS 25.0%
!!! CCAATTTGAGATTTTTTCTT+AGG - chr1.1:40580018-40580037 None:intergenic 25.0%
AAATAACCCAATTCAAACCT+TGG - chr1.1:40580278-40580297 None:intergenic 30.0%
AAATTTATGTTTCAGATGCC+GGG + chr1.1:40580211-40580230 MS.gene034496:CDS 30.0%
AATAACCCAATTCAAACCTT+GGG - chr1.1:40580277-40580296 None:intergenic 30.0%
AGAATGATGAACATTTGAAG+AGG + chr1.1:40579587-40579606 MS.gene034496:CDS 30.0%
ATTCCACTTCTTATTGTCAA+TGG + chr1.1:40580309-40580328 MS.gene034496:CDS 30.0%
CAAATTTATGTTTCAGATGC+CGG + chr1.1:40580210-40580229 MS.gene034496:CDS 30.0%
GAATGATGAACATTTGAAGA+GGG + chr1.1:40579588-40579607 MS.gene034496:CDS 30.0%
GATAATTACTAAATGCATGG+TGG - chr1.1:40579867-40579886 None:intergenic 30.0%
TAACATAACTGATACTCATG+TGG + chr1.1:40580467-40580486 MS.gene034496:CDS 30.0%
TCATTATGATTCTACCGAAT+GGG + chr1.1:40580380-40580399 MS.gene034496:CDS 30.0%
TTCCACTTCTTATTGTCAAT+GGG + chr1.1:40580310-40580329 MS.gene034496:CDS 30.0%
! AAAGTAATTTGTGGCTATGT+AGG - chr1.1:40579743-40579762 None:intergenic 30.0%
! AAGGGTATGAAAGTAATTTG+TGG - chr1.1:40579752-40579771 None:intergenic 30.0%
! TTCTCTATTTTCCTTTGTGA+TGG - chr1.1:40579571-40579590 None:intergenic 30.0%
!! GTGAGATTAAAGGTGTTTAT+TGG + chr1.1:40580652-40580671 MS.gene034496:CDS 30.0%
!! TCTTATTGTCAATGGGTTTT+TGG + chr1.1:40580317-40580336 MS.gene034496:CDS 30.0%
AACCCATTGACAATAAGAAG+TGG - chr1.1:40580315-40580334 None:intergenic 35.0%
AAGGAACGGTTAAAACAATG+TGG - chr1.1:40579667-40579686 None:intergenic 35.0%
AATATGAGAGGTTATGTGGA+AGG - chr1.1:40579771-40579790 None:intergenic 35.0%
AATCATAATGAGGCAAAGCA+GGG - chr1.1:40580371-40580390 None:intergenic 35.0%
ACATTGAAGGCTAAGTAAAG+TGG - chr1.1:40580114-40580133 None:intergenic 35.0%
AGTGTAAGAAATCTTCCTAG+TGG - chr1.1:40580066-40580085 None:intergenic 35.0%
ATATGAGAGGTTATGTGGAA+GGG - chr1.1:40579770-40579789 None:intergenic 35.0%
CATTCGGTAGAATCATAATG+AGG - chr1.1:40580381-40580400 None:intergenic 35.0%
CTCATTATGATTCTACCGAA+TGG + chr1.1:40580379-40580398 MS.gene034496:CDS 35.0%
CTCCTATTTACAAAGCTATG+TGG + chr1.1:40580586-40580605 MS.gene034496:CDS 35.0%
CTTTCACGATCTGAGTAAAT+GGG - chr1.1:40580186-40580205 None:intergenic 35.0%
GATGAAGGTAGTGAGATTAA+AGG + chr1.1:40580642-40580661 MS.gene034496:CDS 35.0%
GTGTAAGAAATCTTCCTAGT+GGG - chr1.1:40580065-40580084 None:intergenic 35.0%
TATGCCTCATTATCATGCAA+TGG + chr1.1:40580509-40580528 MS.gene034496:CDS 35.0%
TCCACATAACCTCTCATATT+TGG + chr1.1:40579771-40579790 MS.gene034496:CDS 35.0%
TCTTTCACGATCTGAGTAAA+TGG - chr1.1:40580187-40580206 None:intergenic 35.0%
! AAAGGCTGTGAAACCAATTT+TGG + chr1.1:40580539-40580558 MS.gene034496:CDS 35.0%
! AAGGCTGTGAAACCAATTTT+GGG + chr1.1:40580540-40580559 MS.gene034496:CDS 35.0%
! ACGAAAAATAAGGTACCAAG+AGG - chr1.1:40579930-40579949 None:intergenic 35.0%
! TACTTAGCCTTCAATGTTTC+AGG + chr1.1:40580117-40580136 MS.gene034496:CDS 35.0%
! TCTATTTTCCTTTGTGATGG+AGG - chr1.1:40579568-40579587 None:intergenic 35.0%
!! CTCCACATAGCTTTGTAAAT+AGG - chr1.1:40580591-40580610 None:intergenic 35.0%
!! TAAGGAGTGTCTTTATGTTG+AGG + chr1.1:40580617-40580636 MS.gene034496:CDS 35.0%
!!! TCTTGGTACCTTATTTTTCG+TGG + chr1.1:40579929-40579948 MS.gene034496:CDS 35.0%
!!! TGAATGGTGGTTTTGTAGTT+GGG - chr1.1:40579615-40579634 None:intergenic 35.0%
AAATACCTTGACAACCCACT+AGG + chr1.1:40580048-40580067 MS.gene034496:CDS 40.0%
AATTTGTGGCTATGTAGGCA+AGG - chr1.1:40579738-40579757 None:intergenic 40.0%
ACAAAACCACCATTCACTCT+TGG + chr1.1:40579619-40579638 MS.gene034496:CDS 40.0%
ATAACCTCTCATATTTGGCG+TGG + chr1.1:40579776-40579795 MS.gene034496:CDS 40.0%
ATCCAAGGATGCATTCTAAC+CGG + chr1.1:40579814-40579833 MS.gene034496:CDS 40.0%
ATGATTCTACCGAATGGGAT+TGG + chr1.1:40580385-40580404 MS.gene034496:CDS 40.0%
ATGCATTCTAACCGGACTTT+GGG + chr1.1:40579822-40579841 MS.gene034496:CDS 40.0%
CAAGGATTGATGCTATGGTA+AGG - chr1.1:40579720-40579739 None:intergenic 40.0%
CAATGGGTCGATGATTTAGT+TGG + chr1.1:40579886-40579905 MS.gene034496:CDS 40.0%
CTGAGTAAATGGGTCCATAT+GGG - chr1.1:40580176-40580195 None:intergenic 40.0%
CTTTATGTTGAGGCTGATGA+AGG + chr1.1:40580627-40580646 MS.gene034496:CDS 40.0%
GAACGGTTAAAACAATGTGG+TGG - chr1.1:40579664-40579683 None:intergenic 40.0%
GAATCATAATGAGGCAAAGC+AGG - chr1.1:40580372-40580391 None:intergenic 40.0%
GCAACTGTGGATAGAGATTA+TGG + chr1.1:40580423-40580442 MS.gene034496:CDS 40.0%
GCCAAATATGAGAGGTTATG+TGG - chr1.1:40579775-40579794 None:intergenic 40.0%
GGTAAGGTCAACAATGACAT+AGG - chr1.1:40579704-40579723 None:intergenic 40.0%
TCATGCAATGGAAGCTACAA+AGG + chr1.1:40580521-40580540 MS.gene034496:CDS 40.0%
TCTGAGTAAATGGGTCCATA+TGG - chr1.1:40580177-40580196 None:intergenic 40.0%
TGTTCTTCATTCATGCCTCT+TGG + chr1.1:40579912-40579931 MS.gene034496:CDS 40.0%
TTACAAAGCTATGTGGAGAG+AGG + chr1.1:40580593-40580612 MS.gene034496:CDS 40.0%
TTGACTTCTCCAAGAGTGAA+TGG - chr1.1:40579631-40579650 None:intergenic 40.0%
TTTGGCCCAAGGTTTGAATT+GGG + chr1.1:40580269-40580288 MS.gene034496:CDS 40.0%
! AGAGGCATGAATGAAGAACA+AGG - chr1.1:40579912-40579931 None:intergenic 40.0%
! GCTTCCATTGCATGATAATG+AGG - chr1.1:40580516-40580535 None:intergenic 40.0%
! TAGCCTTCAATGTTTCAGGT+CGG + chr1.1:40580121-40580140 MS.gene034496:CDS 40.0%
! TTTTGGCCCAAGGTTTGAAT+TGG + chr1.1:40580268-40580287 MS.gene034496:CDS 40.0%
!!! GTGAATGGTGGTTTTGTAGT+TGG - chr1.1:40579616-40579635 None:intergenic 40.0%
AACCTTGGGCCAAAACAAGA+CGG - chr1.1:40580263-40580282 None:intergenic 45.0%
ACCTCTCATCCAATCCCATT+CGG - chr1.1:40580397-40580416 None:intergenic 45.0%
ACTTCTCCAAGAGTGAATGG+TGG - chr1.1:40579628-40579647 None:intergenic 45.0%
CAAGAGAACCTGTGTTAGAG+TGG - chr1.1:40579975-40579994 None:intergenic 45.0%
CCAACCAAGAGTGAGTGTTA+TGG - chr1.1:40580091-40580110 None:intergenic 45.0%
CCATAACACTCACTCTTGGT+TGG + chr1.1:40580088-40580107 MS.gene034496:CDS 45.0%
CCTCTAATCCTCCATCACAA+AGG + chr1.1:40579557-40579576 MS.gene034496:CDS 45.0%
CTCACCATAACACTCACTCT+TGG + chr1.1:40580084-40580103 MS.gene034496:CDS 45.0%
GATGCATTCTAACCGGACTT+TGG + chr1.1:40579821-40579840 MS.gene034496:CDS 45.0%
GGATTCTCGCAGTTTCTTAC+GGG + chr1.1:40580232-40580251 MS.gene034496:CDS 45.0%
GGGATTCTCGCAGTTTCTTA+CGG + chr1.1:40580231-40580250 MS.gene034496:CDS 45.0%
GGTTAGAATGCATCCTTGGA+TGG - chr1.1:40579815-40579834 None:intergenic 45.0%
GTAAGAAACTGCGAGAATCC+CGG - chr1.1:40580232-40580251 None:intergenic 45.0%
GTAGGCAAGGATTGATGCTA+TGG - chr1.1:40579725-40579744 None:intergenic 45.0%
TCCATATGGGTCGTAATGTG+AGG - chr1.1:40580163-40580182 None:intergenic 45.0%
TCCTTGGATGGCCCAATAAA+CGG - chr1.1:40579803-40579822 None:intergenic 45.0%
! CCTTTGTGATGGAGGATTAG+AGG - chr1.1:40579560-40579579 None:intergenic 45.0%
!! ATCTTCCTAGTGGGTTGTCA+AGG - chr1.1:40580056-40580075 None:intergenic 45.0%
ACCGAATGGGATTGGATGAG+AGG + chr1.1:40580393-40580412 MS.gene034496:CDS 50.0%
AGCTATGTGGAGAGAGGCTA+AGG + chr1.1:40580599-40580618 MS.gene034496:CDS 50.0%
AGGTTCTCTTGAACGTGACG+AGG + chr1.1:40579984-40580003 MS.gene034496:CDS 50.0%
ATGTGAGGCGAACCTATCGT+AGG - chr1.1:40580148-40580167 None:intergenic 50.0%
ATTTGGCGTGGCCCGTTTAT+TGG + chr1.1:40579788-40579807 MS.gene034496:CDS 50.0%
CCTTGGATGGCCCAATAAAC+GGG - chr1.1:40579802-40579821 None:intergenic 50.0%
GAGAACCTGTGTTAGAGTGG+TGG - chr1.1:40579972-40579991 None:intergenic 50.0%
GCCTCACATTACGACCCATA+TGG + chr1.1:40580159-40580178 MS.gene034496:CDS 50.0%
GTCCGGTTAGAATGCATCCT+TGG - chr1.1:40579819-40579838 None:intergenic 50.0%
GTGTGCAATGACCCAAAGTC+CGG - chr1.1:40579836-40579855 None:intergenic 50.0%
TGGGTCATTGCACACGAATG+CGG + chr1.1:40579841-40579860 MS.gene034496:CDS 50.0%
TGTGAGGCGAACCTATCGTA+GGG - chr1.1:40580147-40580166 None:intergenic 50.0%
TTTGGCGTGGCCCGTTTATT+GGG + chr1.1:40579789-40579808 MS.gene034496:CDS 50.0%
!! GGATTGGATGAGAGGTGCTT+TGG + chr1.1:40580401-40580420 MS.gene034496:CDS 50.0%
!!! CGGGCTTTACCGTCTTGTTT+TGG + chr1.1:40580251-40580270 MS.gene034496:CDS 50.0%
!!! TACCGTCTTGTTTTGGCCCA+AGG + chr1.1:40580258-40580277 MS.gene034496:CDS 50.0%
CCCGTTTATTGGGCCATCCA+AGG + chr1.1:40579799-40579818 MS.gene034496:CDS 55.0%
GGGCCGACCTGAAACATTGA+AGG - chr1.1:40580127-40580146 None:intergenic 55.0%
! TTTCAGGTCGGCCCTACGAT+AGG + chr1.1:40580133-40580152 MS.gene034496:CDS 55.0%
!! GAGAGGTGCTTTGGCAACTG+TGG + chr1.1:40580410-40580429 MS.gene034496:CDS 55.0%
CGGGCCACGCCAAATATGAG+AGG - chr1.1:40579783-40579802 None:intergenic 60.0%
CGTCGCCACCACTCTAACAC+AGG + chr1.1:40579964-40579983 MS.gene034496:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 40579538 40580692 40579538 ID=MS.gene034496
chr1.1 mRNA 40579538 40580692 40579538 ID=MS.gene034496.t1;Parent=MS.gene034496
chr1.1 exon 40579538 40580692 40579538 ID=MS.gene034496.t1.exon1;Parent=MS.gene034496.t1
chr1.1 CDS 40579538 40580692 40579538 ID=cds.MS.gene034496.t1;Parent=MS.gene034496.t1
Gene Sequence

>MS.gene034496

ATGGGAGCAGGTGGTAGAGCCTCTAATCCTCCATCACAAAGGAAAATAGAGAATGATGAACATTTGAAGAGGGTCCCAACTACAAAACCACCATTCACTCTTGGAGAAGTCAAGAAAGCAATTCCACCACATTGTTTTAACCGTTCCTTAATTCGATCATTTTCCTATGTCATTGTTGACCTTACCATAGCATCAATCCTTGCCTACATAGCCACAAATTACTTTCATACCCTTCCACATAACCTCTCATATTTGGCGTGGCCCGTTTATTGGGCCATCCAAGGATGCATTCTAACCGGACTTTGGGTCATTGCACACGAATGCGGCCACCATGCATTTAGTAATTATCAATGGGTCGATGATTTAGTTGGCCTTGTTCTTCATTCATGCCTCTTGGTACCTTATTTTTCGTGGAAATATAGTCATCGTCGCCACCACTCTAACACAGGTTCTCTTGAACGTGACGAGGTTTTTGTTCCTAAGAAAAAATCTCAAATTGGTTGGTATTTTAAATACCTTGACAACCCACTAGGAAGATTTCTTACACTCACCATAACACTCACTCTTGGTTGGCCACTTTACTTAGCCTTCAATGTTTCAGGTCGGCCCTACGATAGGTTCGCCTCACATTACGACCCATATGGACCCATTTACTCAGATCGTGAAAGACTTCAAATTTATGTTTCAGATGCCGGGATTCTCGCAGTTTCTTACGGGCTTTACCGTCTTGTTTTGGCCCAAGGTTTGAATTGGGTTATTTGTGTTTATGGAATTCCACTTCTTATTGTCAATGGGTTTTTGGTTTTGATTACTTACTTGCAACACACTCACCCTGCTTTGCCTCATTATGATTCTACCGAATGGGATTGGATGAGAGGTGCTTTGGCAACTGTGGATAGAGATTATGGAATTCTTAACAAGGTTTTTCATAACATAACTGATACTCATGTGGTTCATCATATGTTTTCAACTATGCCTCATTATCATGCAATGGAAGCTACAAAGGCTGTGAAACCAATTTTGGGTGAATATTATCATTTTGATGGGACTCCTATTTACAAAGCTATGTGGAGAGAGGCTAAGGAGTGTCTTTATGTTGAGGCTGATGAAGGTAGTGAGATTAAAGGTGTTTATTGGTACAAAAATAAGCTTTAA
Protein sequence

>MS.gene034496.t1

MGAGGRASNPPSQRKIENDEHLKRVPTTKPPFTLGEVKKAIPPHCFNRSLIRSFSYVIVDLTIASILAYIATNYFHTLPHNLSYLAWPVYWAIQGCILTGLWVIAHECGHHAFSNYQWVDDLVGLVLHSCLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSQIGWYFKYLDNPLGRFLTLTITLTLGWPLYLAFNVSGRPYDRFASHYDPYGPIYSDRERLQIYVSDAGILAVSYGLYRLVLAQGLNWVICVYGIPLLIVNGFLVLITYLQHTHPALPHYDSTEWDWMRGALATVDRDYGILNKVFHNITDTHVVHHMFSTMPHYHAMEATKAVKPILGEYYHFDGTPIYKAMWREAKECLYVEADEGSEIKGVYWYKNKL