AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034731

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034731.t1 MTR_1g056520 84.444 315 36 4 1 306 1 311 0.0 504
MS.gene034731.t1 MTR_7g106440 59.150 306 101 8 14 301 14 313 1.30e-112 328
MS.gene034731.t1 MTR_1g045510 41.935 186 100 1 94 279 107 284 2.15e-45 155
MS.gene034731.t1 MTR_3g027140 42.614 176 101 0 100 275 60 235 2.64e-45 154
MS.gene034731.t1 MTR_1g064230 36.742 264 148 5 28 275 12 272 1.50e-42 148
MS.gene034731.t1 MTR_3g075500 39.891 183 108 2 95 277 104 284 4.98e-40 142
MS.gene034731.t1 MTR_4g104470 38.674 181 106 2 95 275 117 292 8.87e-39 139
MS.gene034731.t1 MTR_3g075500 40.476 168 98 2 95 262 104 269 3.99e-36 131
MS.gene034731.t1 MTR_5g030020 39.548 177 102 3 100 275 96 268 8.90e-30 115
MS.gene034731.t1 MTR_3g099590 29.151 271 148 9 13 272 19 256 3.12e-24 100
MS.gene034731.t1 MTR_2g022950 28.636 220 142 6 91 306 51 259 1.22e-22 95.5
MS.gene034731.t1 MTR_2g097960 29.843 191 123 3 92 279 7 189 2.04e-22 97.1
MS.gene034731.t1 MTR_2g022950 29.612 206 130 6 91 292 51 245 2.49e-22 94.4
MS.gene034731.t1 MTR_2g022950 29.949 197 126 6 91 283 51 239 1.62e-21 94.0
MS.gene034731.t1 MTR_3g065190 30.108 186 117 3 91 275 16 189 2.91e-20 90.5
MS.gene034731.t1 MTR_4g131970 28.866 194 125 4 86 275 60 244 9.09e-20 89.4
MS.gene034731.t1 MTR_4g124940 25.991 227 147 4 81 300 27 239 1.35e-18 85.9
MS.gene034731.t1 MTR_4g086600 28.191 188 129 3 100 284 116 300 5.89e-18 84.3
MS.gene034731.t1 MTR_4g085540 29.293 198 118 4 102 295 36 215 1.56e-17 83.2
MS.gene034731.t1 MTR_4g085540 30.882 204 110 6 91 275 200 391 1.83e-16 80.1
MS.gene034731.t1 MTR_7g102730 32.544 169 105 5 102 270 100 259 2.41e-17 82.8
MS.gene034731.t1 MTR_7g102730 26.601 203 128 5 85 275 174 367 4.74e-16 79.0
MS.gene034731.t1 MTR_7g102730 31.098 164 101 2 102 265 12 163 6.61e-16 78.6
MS.gene034731.t1 MTR_1g061870 30.508 177 116 4 102 275 196 368 2.53e-17 82.4
MS.gene034731.t1 MTR_1g061870 23.243 185 130 2 102 286 17 189 1.92e-14 73.9
MS.gene034731.t1 MTR_1g020080 27.027 185 124 4 98 279 95 271 1.77e-16 78.6
MS.gene034731.t1 MTR_3g101370 25.397 189 131 3 94 279 87 268 5.22e-16 77.4
MS.gene034731.t1 MTR_7g013740 41.772 79 46 0 197 275 38 116 5.89e-16 73.9
MS.gene034731.t1 MTR_7g013740 31.395 86 59 0 92 177 32 117 7.38e-11 59.7
MS.gene034731.t1 MTR_1g020080 25.946 185 126 3 98 279 95 271 1.35e-15 77.0
MS.gene034731.t1 MTR_1g020080 25.967 181 120 5 102 275 192 365 6.64e-12 66.2
MS.gene034731.t1 MTR_1g019150 26.289 194 129 3 102 295 34 213 1.60e-15 77.4
MS.gene034731.t1 MTR_1g019150 28.986 207 127 5 85 280 196 393 3.09e-14 73.6
MS.gene034731.t1 MTR_3g109090 24.510 204 140 2 80 283 24 213 1.72e-15 76.6
MS.gene034731.t1 MTR_3g109090 24.510 204 140 2 80 283 40 229 1.93e-15 76.6
MS.gene034731.t1 MTR_3g102040 27.778 198 121 4 102 295 26 205 1.96e-15 77.0
MS.gene034731.t1 MTR_3g080130 34.831 89 56 1 199 287 36 122 3.35e-15 71.6
MS.gene034731.t1 MTR_3g080130 38.667 75 46 0 101 175 37 111 8.70e-11 59.3
MS.gene034731.t1 MTR_3g101370 25.000 196 123 4 94 279 87 268 4.53e-15 75.5
MS.gene034731.t1 MTR_3g101370 25.967 181 120 5 102 275 189 362 4.34e-12 66.6
MS.gene034731.t1 MTR_7g013730 36.471 85 54 0 197 281 38 122 7.46e-15 73.2
MS.gene034731.t1 MTR_7g013730 34.884 86 56 0 90 175 30 115 5.67e-12 65.1
MS.gene034731.t1 MTR_8g022050 24.229 227 151 4 81 300 43 255 8.98e-15 74.7
MS.gene034731.t1 MTR_8g022050 26.562 192 115 3 92 261 139 326 2.56e-12 67.4
MS.gene034731.t1 MTR_7g118230 31.492 181 84 5 101 277 44 188 1.11e-14 73.9
MS.gene034731.t1 MTR_1g115375 25.571 219 145 7 64 281 192 393 4.96e-14 72.8
MS.gene034731.t1 MTR_1g097440 27.976 168 101 3 102 265 32 183 6.51e-14 72.4
MS.gene034731.t1 MTR_1g097440 28.402 169 108 5 99 265 117 274 2.55e-12 67.8
MS.gene034731.t1 MTR_1g097440 30.102 196 105 8 102 280 211 391 3.75e-12 67.0
MS.gene034731.t1 MTR_6g040190 24.590 183 126 3 102 284 27 197 9.25e-14 72.0
MS.gene034731.t1 MTR_6g040190 27.179 195 124 5 92 275 192 379 7.52e-12 66.2
MS.gene034731.t1 MTR_4g122650 28.313 166 104 6 101 263 89 242 5.28e-13 69.7
MS.gene034731.t1 MTR_7g094660 27.184 206 130 6 79 275 622 816 6.10e-13 69.7
MS.gene034731.t1 MTR_2g026180 28.125 192 126 5 101 285 5 191 9.66e-13 68.6
MS.gene034731.t1 MTR_3g084040 39.506 81 48 1 197 277 34 113 9.67e-13 65.1
MS.gene034731.t1 MTR_4g109540 39.080 87 52 1 96 181 38 124 9.70e-13 67.4
MS.gene034731.t1 MTR_4g109540 35.366 82 51 1 200 281 43 122 1.64e-12 66.6
MS.gene034731.t1 MTR_3g005670 25.806 217 137 6 90 284 281 495 1.40e-12 68.6
MS.gene034731.t1 MTR_3g005670 25.806 217 137 6 90 284 279 493 1.45e-12 68.6
MS.gene034731.t1 MTR_4g031680 26.009 223 138 7 90 287 231 451 2.85e-12 67.4
MS.gene034731.t1 MTR_6g004810 23.874 222 142 5 64 284 22 217 3.44e-12 66.6
MS.gene034731.t1 MTR_6g040070 27.072 181 122 5 102 275 107 284 3.45e-12 67.4
MS.gene034731.t1 MTR_3g005670 25.806 217 137 6 90 284 281 495 4.03e-12 67.0
MS.gene034731.t1 MTR_3g005670 25.806 217 137 6 90 284 281 495 4.14e-12 67.0
MS.gene034731.t1 MTR_3g005670 25.806 217 137 6 90 284 279 493 4.29e-12 67.0
MS.gene034731.t1 MTR_3g005670 25.806 217 137 6 90 284 281 495 5.18e-12 66.6
MS.gene034731.t1 MTR_3g005670 25.806 217 137 6 90 284 279 493 5.42e-12 66.6
MS.gene034731.t1 MTR_4g088010 24.138 203 136 4 84 281 55 244 6.06e-12 65.9
MS.gene034731.t1 MTR_4g070080 30.864 81 56 0 195 275 2 82 6.46e-12 62.4
MS.gene034731.t1 MTR_4g070080 30.864 81 56 0 195 275 2 82 1.27e-11 62.4
MS.gene034731.t1 MTR_2g013130 26.027 219 132 6 82 275 41 254 1.71e-11 64.7
MS.gene034731.t1 MTR_8g092550 24.623 199 141 4 86 278 187 382 1.73e-11 65.1
MS.gene034731.t1 MTR_4g070140 33.735 83 55 0 193 275 2 84 2.09e-11 62.4
MS.gene034731.t1 MTR_4g070190 30.864 81 56 0 195 275 4 84 2.09e-11 61.6
MS.gene034731.t1 MTR_2g013130 26.389 216 129 6 85 275 1 211 2.20e-11 64.3
MS.gene034731.t1 MTR_2g013130 26.027 219 132 6 82 275 161 374 4.03e-11 63.9
MS.gene034731.t1 MTR_1g080390 40.909 88 51 1 93 180 275 361 4.49e-11 63.9
MS.gene034731.t1 MTR_4g109540 40.299 67 38 1 215 281 66 130 6.77e-11 62.0
MS.gene034731.t1 MTR_3g095230 25.405 185 129 4 100 278 215 396 8.64e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034731.t1 AT3G52380 62.500 192 66 2 101 286 117 308 6.59e-87 263
MS.gene034731.t1 AT1G60000 42.857 175 93 1 101 275 86 253 3.65e-44 151
MS.gene034731.t1 AT1G60000 42.500 80 46 0 101 180 178 257 1.78e-13 69.3
MS.gene034731.t1 AT2G37220 37.850 214 119 2 76 275 67 280 1.42e-42 148
MS.gene034731.t1 AT2G37220 27.564 156 102 2 19 174 134 278 2.63e-12 66.6
MS.gene034731.t1 AT2G35410 41.475 217 112 5 64 276 67 272 4.75e-41 145
MS.gene034731.t1 AT3G52150 35.686 255 139 6 39 275 6 253 6.26e-41 143
MS.gene034731.t1 AT3G52150 35.686 255 139 6 39 275 6 253 6.26e-41 143
MS.gene034731.t1 AT5G50250 36.255 251 144 6 36 275 38 283 6.56e-41 144
MS.gene034731.t1 AT4G24770 38.049 205 121 5 77 281 127 325 5.93e-38 137
MS.gene034731.t1 AT4G24770 38.049 205 121 5 77 281 127 325 5.93e-38 137
MS.gene034731.t1 AT1G01080 37.209 172 102 3 102 268 110 280 1.15e-27 109
MS.gene034731.t1 AT1G01080 37.572 173 101 4 102 268 110 281 8.90e-27 107
MS.gene034731.t1 AT1G01080 37.037 162 97 2 102 258 110 271 5.29e-26 104
MS.gene034731.t1 AT5G19350 28.962 183 118 4 100 279 24 197 1.75e-20 91.3
MS.gene034731.t1 AT5G19350 28.962 183 118 4 100 279 24 197 1.76e-20 91.3
MS.gene034731.t1 AT1G54080 25.991 227 147 4 81 300 44 256 4.22e-19 87.4
MS.gene034731.t1 AT4G09040 29.121 182 118 4 95 272 89 263 1.90e-18 84.3
MS.gene034731.t1 AT3G14100 26.754 228 146 4 81 301 40 253 1.97e-18 85.5
MS.gene034731.t1 AT3G14100 24.479 192 119 3 92 261 136 323 5.24e-11 63.5
MS.gene034731.t1 AT4G09040 29.545 176 113 4 101 272 35 203 1.98e-18 83.2
MS.gene034731.t1 AT2G23350 30.435 161 100 2 102 262 48 196 2.75e-18 85.5
MS.gene034731.t1 AT2G23350 31.282 195 121 5 91 275 212 403 2.52e-15 76.6
MS.gene034731.t1 AT2G23350 31.677 161 101 5 102 262 136 287 2.76e-13 70.5
MS.gene034731.t1 AT2G18510 28.495 186 120 3 91 275 16 189 5.55e-18 83.6
MS.gene034731.t1 AT1G54080 25.974 231 146 5 81 300 44 260 1.26e-17 83.2
MS.gene034731.t1 AT1G11650 26.728 217 135 5 92 294 54 260 1.63e-17 81.6
MS.gene034731.t1 AT1G47490 26.339 224 143 6 59 276 68 275 2.62e-17 81.3
MS.gene034731.t1 AT5G54900 25.871 201 136 5 100 295 60 252 2.62e-17 82.0
MS.gene034731.t1 AT4G27000 27.451 204 132 6 100 297 80 273 2.92e-17 82.0
MS.gene034731.t1 AT1G11650 26.606 218 136 5 92 295 54 261 4.69e-17 81.3
MS.gene034731.t1 AT1G49760 31.325 166 94 4 102 263 47 196 5.43e-17 81.6
MS.gene034731.t1 AT1G49760 29.949 197 111 4 94 275 218 402 3.75e-14 73.2
MS.gene034731.t1 AT1G49760 27.711 166 101 5 102 262 135 286 5.54e-12 66.6
MS.gene034731.t1 AT1G49760 31.325 166 94 4 102 263 47 196 5.43e-17 81.6
MS.gene034731.t1 AT1G49760 29.949 197 111 4 94 275 218 402 3.75e-14 73.2
MS.gene034731.t1 AT1G49760 27.711 166 101 5 102 262 135 286 5.54e-12 66.6
MS.gene034731.t1 AT3G53460 43.333 120 52 4 65 180 73 180 8.38e-17 80.1
MS.gene034731.t1 AT3G53460 36.364 77 49 0 199 275 257 333 1.20e-14 73.9
MS.gene034731.t1 AT3G53460 40.541 74 44 0 101 174 258 331 7.24e-12 65.5
MS.gene034731.t1 AT3G53460 43.333 120 52 4 65 180 73 180 8.38e-17 80.1
MS.gene034731.t1 AT3G53460 36.364 77 49 0 199 275 257 333 1.20e-14 73.9
MS.gene034731.t1 AT3G53460 40.541 74 44 0 101 174 258 331 7.24e-12 65.5
MS.gene034731.t1 AT3G53460 43.333 120 52 4 65 180 73 180 8.38e-17 80.1
MS.gene034731.t1 AT3G53460 36.364 77 49 0 199 275 257 333 1.20e-14 73.9
MS.gene034731.t1 AT3G53460 40.541 74 44 0 101 174 258 331 7.24e-12 65.5
MS.gene034731.t1 AT3G19130 29.348 184 118 4 100 279 108 283 9.47e-17 80.5
MS.gene034731.t1 AT3G16380 30.481 187 122 5 94 275 196 379 1.01e-16 80.9
MS.gene034731.t1 AT3G16380 27.083 192 125 4 79 270 5 181 1.87e-12 68.2
MS.gene034731.t1 AT3G16380 29.282 181 116 6 102 280 114 284 6.14e-12 66.6
MS.gene034731.t1 AT1G47490 25.806 248 161 7 35 276 45 275 1.12e-16 80.5
MS.gene034731.t1 AT1G47490 25.794 252 159 7 63 296 151 392 5.36e-12 66.2
MS.gene034731.t1 AT4G34110 29.012 162 103 2 102 263 38 187 4.40e-16 79.0
MS.gene034731.t1 AT4G34110 30.435 161 103 4 102 262 126 277 1.36e-14 74.7
MS.gene034731.t1 AT4G34110 28.934 197 123 6 91 275 202 393 1.33e-13 71.6
MS.gene034731.t1 AT3G55340 27.000 200 131 7 87 279 149 340 4.53e-16 79.0
MS.gene034731.t1 AT1G17370 25.446 224 146 4 81 297 35 244 6.30e-16 78.2
MS.gene034731.t1 AT2G36660 28.922 204 130 6 102 297 203 399 6.88e-16 78.6
MS.gene034731.t1 AT2G36660 26.036 169 113 2 102 270 26 182 5.15e-11 63.5
MS.gene034731.t1 AT1G17370 25.561 223 145 4 81 296 35 243 3.11e-15 76.3
MS.gene034731.t1 AT4G13850 40.000 85 49 1 200 284 36 118 9.04e-15 70.9
MS.gene034731.t1 AT4G13850 40.000 85 49 1 200 284 36 118 1.11e-14 70.9
MS.gene034731.t1 AT4G13850 40.000 85 49 1 200 284 36 118 1.24e-14 70.9
MS.gene034731.t1 AT3G15010 26.961 204 140 4 83 286 59 253 1.31e-14 74.3
MS.gene034731.t1 AT3G15010 26.961 204 140 4 83 286 59 253 1.31e-14 74.3
MS.gene034731.t1 AT3G53460 36.364 77 49 0 199 275 278 354 1.38e-14 73.9
MS.gene034731.t1 AT3G53460 44.118 102 42 3 65 163 73 162 2.91e-14 72.8
MS.gene034731.t1 AT3G53460 40.541 74 44 0 101 174 279 352 9.37e-12 65.5
MS.gene034731.t1 AT1G49600 29.348 184 118 4 100 279 119 294 1.45e-14 74.3
MS.gene034731.t1 AT1G49600 29.348 184 118 4 100 279 119 294 1.45e-14 74.3
MS.gene034731.t1 AT1G49600 29.348 184 118 4 100 279 119 294 2.45e-14 73.6
MS.gene034731.t1 AT1G22760 29.050 179 120 3 102 275 231 407 3.55e-14 73.2
MS.gene034731.t1 AT1G22760 27.439 164 112 3 102 265 138 294 1.15e-12 68.9
MS.gene034731.t1 AT1G22760 28.313 166 98 4 102 263 51 199 9.01e-12 66.2
MS.gene034731.t1 AT1G71770 27.717 184 116 4 102 275 241 417 6.61e-14 72.4
MS.gene034731.t1 AT1G71770 28.313 166 98 4 102 263 61 209 2.66e-12 67.8
MS.gene034731.t1 AT1G71770 27.717 184 116 4 102 275 241 417 6.61e-14 72.4
MS.gene034731.t1 AT1G71770 28.313 166 98 4 102 263 61 209 2.66e-12 67.8
MS.gene034731.t1 AT1G34140 30.288 208 114 6 102 306 33 212 7.38e-14 72.0
MS.gene034731.t1 AT1G34140 30.366 191 103 7 102 275 121 298 7.92e-13 68.9
MS.gene034731.t1 AT5G06210 36.250 80 51 0 101 180 35 114 9.61e-14 67.8
MS.gene034731.t1 AT3G08000 36.364 88 55 1 200 287 42 128 9.94e-14 67.8
MS.gene034731.t1 AT4G13850 39.759 83 48 1 200 282 36 116 1.04e-13 67.4
MS.gene034731.t1 AT1G47500 26.178 191 127 5 92 276 95 277 2.20e-13 70.1
MS.gene034731.t1 AT1G17640 28.481 158 105 3 101 258 67 216 2.86e-13 70.1
MS.gene034731.t1 AT1G17640 28.481 158 105 3 101 258 67 216 2.86e-13 70.1
MS.gene034731.t1 AT1G17640 28.481 158 105 3 101 258 67 216 2.86e-13 70.1
MS.gene034731.t1 AT5G61030 38.710 93 57 0 84 176 24 116 3.33e-13 69.3
MS.gene034731.t1 AT5G61030 35.802 81 52 0 197 277 38 118 1.48e-12 67.4
MS.gene034731.t1 AT5G61030 38.710 93 57 0 84 176 24 116 3.33e-13 69.3
MS.gene034731.t1 AT5G61030 35.802 81 52 0 197 277 38 118 1.48e-12 67.4
MS.gene034731.t1 AT3G23830 36.471 85 52 1 200 284 36 118 4.16e-13 65.9
MS.gene034731.t1 AT3G23830 39.744 78 47 0 99 176 34 111 7.72e-11 59.7
MS.gene034731.t1 AT3G23830 36.471 85 52 1 200 284 36 118 4.16e-13 65.9
MS.gene034731.t1 AT3G23830 39.744 78 47 0 99 176 34 111 7.72e-11 59.7
MS.gene034731.t1 AT5G40490 26.190 210 129 6 83 283 21 213 4.29e-13 69.7
MS.gene034731.t1 AT1G47500 26.178 191 127 5 92 276 95 277 6.03e-13 69.3
MS.gene034731.t1 AT1G47500 25.980 204 132 6 102 296 201 394 3.59e-11 63.9
MS.gene034731.t1 AT4G26650 27.014 211 132 7 90 281 1 208 6.98e-13 69.3
MS.gene034731.t1 AT1G60900 25.837 209 131 6 90 276 246 452 1.03e-12 68.9
MS.gene034731.t1 AT4G26650 27.143 210 131 7 91 281 5 211 1.61e-12 68.2
MS.gene034731.t1 AT4G36690 26.009 223 138 7 90 287 230 450 2.77e-12 67.4
MS.gene034731.t1 AT4G36690 26.009 223 138 7 90 287 230 450 5.53e-12 66.6
MS.gene034731.t1 AT3G26420 31.633 98 63 1 196 293 4 97 7.37e-12 64.7
MS.gene034731.t1 AT5G47320 38.889 90 53 1 200 289 32 119 9.78e-12 63.9
MS.gene034731.t1 AT1G74230 37.374 99 61 1 78 176 12 109 1.02e-11 64.7
MS.gene034731.t1 AT4G36690 26.009 223 138 7 90 287 230 450 1.15e-11 65.9
MS.gene034731.t1 AT4G36690 26.009 223 138 7 90 287 208 428 1.19e-11 65.5
MS.gene034731.t1 AT4G39260 31.169 77 53 0 199 275 6 82 1.22e-11 60.5
MS.gene034731.t1 AT4G39260 30.769 78 54 0 198 275 5 82 1.36e-11 61.2
MS.gene034731.t1 AT4G19610 29.302 215 136 7 74 278 572 780 1.68e-11 65.5
MS.gene034731.t1 AT4G16280 27.711 166 105 5 101 263 121 274 1.72e-11 65.1
MS.gene034731.t1 AT4G16280 27.711 166 105 5 101 263 46 199 2.30e-11 64.7
MS.gene034731.t1 AT2G21660 31.250 80 55 0 196 275 5 84 2.43e-11 61.6
MS.gene034731.t1 AT4G16280 27.711 166 105 5 101 263 121 274 2.77e-11 64.7
MS.gene034731.t1 AT2G27330 36.585 82 52 0 99 180 20 101 3.23e-11 60.1
MS.gene034731.t1 AT4G39260 30.769 78 54 0 198 275 5 82 3.30e-11 61.2
MS.gene034731.t1 AT2G21660 31.250 80 55 0 196 275 5 84 3.32e-11 61.6
MS.gene034731.t1 AT2G16940 27.957 186 123 4 100 278 41 222 4.27e-11 63.5
MS.gene034731.t1 AT2G16940 27.957 186 123 4 100 278 41 222 4.27e-11 63.5
MS.gene034731.t1 AT3G13224 25.150 167 116 4 99 265 9 166 4.86e-11 63.2
MS.gene034731.t1 AT3G13224 24.138 174 123 4 92 265 11 175 6.23e-11 61.6
MS.gene034731.t1 AT3G46020 36.957 92 55 1 99 190 6 94 6.97e-11 58.9
MS.gene034731.t1 AT5G55550 26.667 165 110 4 101 257 7 168 7.04e-11 63.2
MS.gene034731.t1 AT5G55550 26.667 165 110 4 101 257 7 168 7.04e-11 63.2
MS.gene034731.t1 AT5G55550 26.667 165 110 4 101 257 7 168 7.04e-11 63.2
MS.gene034731.t1 AT5G55550 26.667 165 110 4 101 257 7 168 7.04e-11 63.2
MS.gene034731.t1 AT5G55550 26.667 165 110 4 101 257 7 168 9.42e-11 62.8
MS.gene034731.t1 AT5G55550 26.667 165 110 4 101 257 7 168 9.42e-11 62.8
MS.gene034731.t1 AT5G55550 26.667 165 110 4 101 257 7 168 9.42e-11 62.8
MS.gene034731.t1 AT5G55550 26.667 165 110 4 101 257 7 168 9.42e-11 62.8
MS.gene034731.t1 AT5G55550 26.667 165 110 4 101 257 7 168 9.42e-11 62.8
MS.gene034731.t1 AT4G13860 37.333 75 47 0 200 274 4 78 9.58e-11 57.8

Find 94 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCCTACTTTGGGCACTTC+TGG 0.130934 1.1:-43883105 None:intergenic
CCGACCTTTACGACTGAATT+TGG 0.142633 1.1:+43883495 MS.gene034731:CDS
GATAGCTTGGAAATGTTATT+TGG 0.203210 1.1:+43883580 MS.gene034731:CDS
AGTTGGAGGTAGGGTTATTA+AGG 0.221845 1.1:+43883074 MS.gene034731:CDS
TCCCAATTGGCTCAACTCTT+TGG 0.238814 1.1:+43881691 MS.gene034731:CDS
AACGGAAAATCTCGCGGATA+TGG 0.262481 1.1:+43883285 MS.gene034731:CDS
CAACAAAGAGTCTCCTTGAT+TGG 0.305570 1.1:-43881642 None:intergenic
TTCACTGTCTTCTTCCCAAT+TGG 0.314052 1.1:+43881678 MS.gene034731:CDS
TGGGAAGAAGACAGTGAAAA+TGG 0.336488 1.1:-43881673 None:intergenic
TGCCTACTTTGGGCACTTCT+GGG 0.350774 1.1:-43883104 None:intergenic
TTGGTCTGTGTGGGAAGTTA+AGG 0.353260 1.1:-43881444 None:intergenic
AGGAAATAATGTTGATAGCT+TGG 0.353289 1.1:+43883567 MS.gene034731:CDS
TTTGTAGAAATGGTTGTTGT+TGG 0.378782 1.1:-43881463 None:intergenic
TGAATTTGGCTGTGGATAAC+AGG 0.383307 1.1:+43883509 MS.gene034731:CDS
ATTGTTGTTCTTCCTCCTCA+TGG 0.388722 1.1:-43881546 None:intergenic
CTCCAAAGAGTTGAGCCAAT+TGG 0.391995 1.1:-43881693 None:intergenic
GGGTTTGCATTTGTTACAAT+GGG 0.403301 1.1:+43882300 MS.gene034731:CDS
AACAAAGAGTCTCCTTGATT+GGG 0.407980 1.1:-43881641 None:intergenic
GAAGCAATTCGAATGTTTGA+TGG 0.408567 1.1:+43882342 MS.gene034731:CDS
CAAAGGCTTCTCTAAGATCC+TGG 0.418070 1.1:-43883215 None:intergenic
GCTCAACTCTTTGGAGAGGC+TGG 0.422749 1.1:+43881700 MS.gene034731:CDS
TCCAAAGAGTTGAGCCAATT+GGG 0.423377 1.1:-43881692 None:intergenic
TCGGTAATTGATCAAAATAA+AGG 0.427426 1.1:+43883547 MS.gene034731:CDS
TGGTCTGTGTGGGAAGTTAA+GGG 0.428608 1.1:-43881443 None:intergenic
TGAAGAGGGTTGAATAATTG+AGG 0.432626 1.1:-43881502 None:intergenic
GAAGCCTTTGCTGAGCAATC+AGG 0.442092 1.1:+43883228 MS.gene034731:CDS
GTAGGCAAAAGGGTACAAAT+AGG 0.445334 1.1:+43883120 MS.gene034731:CDS
AAGTGCCCAAAGTAGGCAAA+AGG 0.446953 1.1:+43883109 MS.gene034731:CDS
AATCAGGCTTACTGAGTGCC+AGG 0.450781 1.1:+43883244 MS.gene034731:CDS
TAATTGAGGGATTAGATTGA+AGG 0.454934 1.1:-43881488 None:intergenic
AAGAGTCTGTGGTGGCAGAT+AGG 0.457732 1.1:-43881379 None:intergenic
GAAGAGGGTTGAATAATTGA+GGG 0.476001 1.1:-43881501 None:intergenic
CAATCAAGGAGACTCTTTGT+TGG 0.482330 1.1:+43881643 MS.gene034731:CDS
ACAGAACTCAGACCTAAAAC+AGG 0.483263 1.1:+43881606 MS.gene034731:CDS
CAGGAAGCCTTCATCTCCTT+CGG 0.484942 1.1:+43883528 MS.gene034731:CDS
AGAGTCTGTGGTGGCAGATA+GGG 0.485185 1.1:-43881378 None:intergenic
AAGATCTATGCTGGAAACCT+TGG 0.486607 1.1:+43883177 MS.gene034731:CDS
CAAATAGGCTCAAACTATAG+AGG 0.494932 1.1:+43883135 MS.gene034731:CDS
GTTAAGGGTGATGAGTGAAA+TGG 0.499482 1.1:-43881428 None:intergenic
TGGTTGTTGTTGGTCTGTGT+GGG 0.501496 1.1:-43881453 None:intergenic
TTTACGACTGAATTTGGCTG+TGG 0.511362 1.1:+43883501 MS.gene034731:CDS
CTATGCTGGAAACCTTGGTT+GGG 0.512049 1.1:+43883182 MS.gene034731:CDS
AGCCCTCACAAGATCTATGC+TGG 0.520202 1.1:+43883168 MS.gene034731:CDS
TCAATTACCGAAGGAGATGA+AGG 0.522095 1.1:-43883535 None:intergenic
AATTGAGGGATTAGATTGAA+GGG 0.529047 1.1:-43881487 None:intergenic
AATGAAGGAGGTGGATGAAG+AGG 0.529395 1.1:-43881517 None:intergenic
AATGGAAGAATGGGTAGTAA+AGG 0.529595 1.1:-43881410 None:intergenic
TTATTTGGAATAAGCAAATG+AGG 0.529682 1.1:+43883595 MS.gene034731:CDS
AGGGTTTGCATTTGTTACAA+TGG 0.531555 1.1:+43882299 MS.gene034731:CDS
AAGCAGAATCAACCCAATCA+AGG 0.531753 1.1:+43881629 MS.gene034731:CDS
TCTATGCTGGAAACCTTGGT+TGG 0.532571 1.1:+43883181 MS.gene034731:CDS
ATGGTTGTTGTTGGTCTGTG+TGG 0.534605 1.1:-43881454 None:intergenic
TGTACAGACAGTTGGAGGTA+GGG 0.536228 1.1:+43883065 MS.gene034731:intron
TGATGAGTGAAATGGAAGAA+TGG 0.540734 1.1:-43881420 None:intergenic
TTGTACAGACAGTTGGAGGT+AGG 0.542248 1.1:+43883064 MS.gene034731:intron
GATGAGTGAAATGGAAGAAT+GGG 0.542987 1.1:-43881419 None:intergenic
ATGAAGGAGGTGGATGAAGA+GGG 0.548537 1.1:-43881516 None:intergenic
TCCTCATGGAATGAAAATGA+AGG 0.556417 1.1:-43881532 None:intergenic
TGTCTCTTTCGAAACTGCTG+AGG 0.563295 1.1:+43883311 MS.gene034731:CDS
CGAAACTGCTGAGGATGTAG+AGG 0.566347 1.1:+43883320 MS.gene034731:CDS
TTCCCAGAAGTGCCCAAAGT+AGG 0.569809 1.1:+43883102 MS.gene034731:CDS
ACAGCCAAATTCAGTCGTAA+AGG 0.572484 1.1:-43883499 None:intergenic
TGGAATGAAAATGAAGGAGG+TGG 0.573591 1.1:-43881526 None:intergenic
AGTGCCCAAAGTAGGCAAAA+GGG 0.576216 1.1:+43883110 MS.gene034731:CDS
AAAGGCTTCTCTAAGATCCT+GGG 0.581121 1.1:-43883214 None:intergenic
TGGTTGGGATATGACTTCCC+AGG 0.584520 1.1:+43883197 MS.gene034731:CDS
GGCTGGAAATGTTGTGTCTG+TGG 0.585681 1.1:+43881717 MS.gene034731:CDS
ACCAGTGCTTGCACTAGCCA+TGG 0.587647 1.1:-43881350 None:intergenic
GATGTTGTACAGACAGTTGG+AGG 0.588100 1.1:+43883060 MS.gene034731:intron
GTTCCTTTCGTAGACGACCC+TGG 0.594290 1.1:-43883262 None:intergenic
ACCATGGCTAGTGCAAGCAC+TGG 0.600180 1.1:+43881349 None:intergenic
TTTCCAGCATAGATCTTGTG+AGG 0.601847 1.1:-43883171 None:intergenic
GACATCACAAATAGAAGCAG+AGG 0.602278 1.1:+43882279 MS.gene034731:CDS
ATTGGCTCAACTCTTTGGAG+AGG 0.610646 1.1:+43881696 MS.gene034731:CDS
TGGAAATGTTGTGTCTGTGG+AGG 0.614601 1.1:+43881720 MS.gene034731:CDS
AGGAAAAGTTGAAGAGTCTG+TGG 0.620276 1.1:-43881390 None:intergenic
TAAGCCTGATTGCTCAGCAA+AGG 0.625819 1.1:-43883232 None:intergenic
TTCCAGCATAGATCTTGTGA+GGG 0.627663 1.1:-43883170 None:intergenic
GTGCCAGGGTCGTCTACGAA+AGG 0.628572 1.1:+43883259 MS.gene034731:CDS
ATTTGTTACAATGGGGAGCG+TGG 0.631285 1.1:+43882308 MS.gene034731:CDS
CCAAATTCAGTCGTAAAGGT+CGG 0.632704 1.1:-43883495 None:intergenic
TATGATGTTGTACAGACAGT+TGG 0.641337 1.1:+43883057 MS.gene034731:intron
ATCAGGCTTACTGAGTGCCA+GGG 0.645982 1.1:+43883245 MS.gene034731:CDS
TGTTACAATGGGGAGCGTGG+AGG 0.666183 1.1:+43882311 MS.gene034731:CDS
GTTGCTTTGAGTGCTATGAA+CGG 0.670859 1.1:+43883342 MS.gene034731:CDS
AAAAGTTGAAGAGTCTGTGG+TGG 0.674091 1.1:-43881387 None:intergenic
ACATCACAAATAGAAGCAGA+GGG 0.675025 1.1:+43882280 MS.gene034731:CDS
GTCGTCTACGAAAGGAACAA+CGG 0.675544 1.1:+43883267 MS.gene034731:CDS
GGGAAGTCATATCCCAACCA+AGG 0.679543 1.1:-43883194 None:intergenic
TCATGGAATGAAAATGAAGG+AGG 0.686382 1.1:-43881529 None:intergenic
GGTTTGCATTTGTTACAATG+GGG 0.692782 1.1:+43882301 MS.gene034731:CDS
AGGAACAACGGAAAATCTCG+CGG 0.706699 1.1:+43883279 MS.gene034731:CDS
TCTGTGGTGGCAGATAGGGA+AGG 0.718022 1.1:-43881374 None:intergenic
TTTGAGTGCTATGAACGGCG+TGG 0.729342 1.1:+43883347 MS.gene034731:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTTTTAAATTACTAT+AGG + chr1.1:43882056-43882075 MS.gene034731:intron 10.0%
!! AACTAAATAATTAATAAACC+AGG - chr1.1:43882513-43882532 None:intergenic 15.0%
!!! ATTAAAATTTTGCAATTTGA+GGG - chr1.1:43881855-43881874 None:intergenic 15.0%
!!! ATTATTTTGGAATATTGATA+TGG + chr1.1:43882107-43882126 MS.gene034731:intron 15.0%
!!! ATTTAAGATATTTTTGGTTT+TGG + chr1.1:43882192-43882211 MS.gene034731:intron 15.0%
!!! TGTTGATTACATTTTAAATA+TGG + chr1.1:43882381-43882400 MS.gene034731:intron 15.0%
!!! TTATTTTGGAATATTGATAT+GGG + chr1.1:43882108-43882127 MS.gene034731:intron 15.0%
!!! TTTAAGATATTTTTGGTTTT+GGG + chr1.1:43882193-43882212 MS.gene034731:intron 15.0%
!! AAAATTTGCACAACTAATAA+TGG - chr1.1:43883393-43883412 None:intergenic 20.0%
!! CTTAAATCAAGAAAAGATAT+AGG - chr1.1:43882935-43882954 None:intergenic 20.0%
!! TAACTCAAATCAAACAAAAT+AGG - chr1.1:43882242-43882261 None:intergenic 20.0%
!! TATTCTATTATAGATGAAGA+TGG + chr1.1:43882590-43882609 MS.gene034731:intron 20.0%
!! TCAATATTCCAAAATAATCA+CGG - chr1.1:43882105-43882124 None:intergenic 20.0%
!! TCTTAGATTAGTATATAGTA+TGG + chr1.1:43882554-43882573 MS.gene034731:intron 20.0%
!!! AATAAGTTGAAATCATCTTA+TGG + chr1.1:43882843-43882862 MS.gene034731:intron 20.0%
!!! GATTAAAATTTTGCAATTTG+AGG - chr1.1:43881856-43881875 None:intergenic 20.0%
!!! TATCATTTTGGGTATAAATT+TGG + chr1.1:43882696-43882715 MS.gene034731:intron 20.0%
!!! TATTTTGGAATATTGATATG+GGG + chr1.1:43882109-43882128 MS.gene034731:intron 20.0%
!!! TCTTGTCTTATTATCATTTT+GGG + chr1.1:43882685-43882704 MS.gene034731:intron 20.0%
!!! TTCTTGTCTTATTATCATTT+TGG + chr1.1:43882684-43882703 MS.gene034731:intron 20.0%
! AAACAGACCAATAAATCATT+TGG + chr1.1:43882903-43882922 MS.gene034731:intron 25.0%
! AACAATGATCAAAACTGAAA+AGG - chr1.1:43881757-43881776 None:intergenic 25.0%
! AACAGACCAATAAATCATTT+GGG + chr1.1:43882904-43882923 MS.gene034731:intron 25.0%
! AATAAGCTATTTATCCAAAC+AGG - chr1.1:43882723-43882742 None:intergenic 25.0%
! ACAATGATCAAAACTGAAAA+GGG - chr1.1:43881756-43881775 None:intergenic 25.0%
! ACATTTAGACCATAATGATT+TGG + chr1.1:43882613-43882632 MS.gene034731:intron 25.0%
! ATAAGCTATTTATCCAAACA+GGG - chr1.1:43882722-43882741 None:intergenic 25.0%
! ATAGCCATTACCATTATAAT+TGG - chr1.1:43883040-43883059 None:intergenic 25.0%
! CATTGTTTGTTTCATATATG+AGG + chr1.1:43881770-43881789 MS.gene034731:intron 25.0%
! GCTTAGTTGAAAATTAGTTA+GGG + chr1.1:43882648-43882667 MS.gene034731:intron 25.0%
! TCGGTAATTGATCAAAATAA+AGG + chr1.1:43883547-43883566 MS.gene034731:CDS 25.0%
!! CAATTTAGTTGATACTTTGT+AGG + chr1.1:43881875-43881894 MS.gene034731:intron 25.0%
!! CGTGAATTTGAAACTTAAAA+GGG + chr1.1:43881929-43881948 MS.gene034731:intron 25.0%
!!! ATTTTGGAATATTGATATGG+GGG + chr1.1:43882110-43882129 MS.gene034731:intron 25.0%
!!! TGTATAATGTACTGTTTTTC+AGG + chr1.1:43883462-43883481 MS.gene034731:intron 25.0%
!!! TTATTTTGATCAATTACCGA+AGG - chr1.1:43883547-43883566 None:intergenic 25.0%
AAGACAAGAAAACAAGATAC+TGG - chr1.1:43882674-43882693 None:intergenic 30.0%
AATTGAGGGATTAGATTGAA+GGG - chr1.1:43881490-43881509 None:intergenic 30.0%
GAGTCCAATTATAATGGTAA+TGG + chr1.1:43883033-43883052 MS.gene034731:intron 30.0%
GATAAAACCCTACAATTTCA+AGG + chr1.1:43882142-43882161 MS.gene034731:intron 30.0%
GATAGCTTGGAAATGTTATT+TGG + chr1.1:43883580-43883599 MS.gene034731:CDS 30.0%
GATTAAGCACCAAATCATTA+TGG - chr1.1:43882625-43882644 None:intergenic 30.0%
GGCTTAGTTGAAAATTAGTT+AGG + chr1.1:43882647-43882666 MS.gene034731:intron 30.0%
GTATCTCCCAAATGATTTAT+TGG - chr1.1:43882913-43882932 None:intergenic 30.0%
TAATTGAGGGATTAGATTGA+AGG - chr1.1:43881491-43881510 None:intergenic 30.0%
TAGAGTTGCAATTGACAATT+TGG - chr1.1:43882986-43883005 None:intergenic 30.0%
TTAAAAGCCAAAACTCAAGT+TGG - chr1.1:43882169-43882188 None:intergenic 30.0%
TTTGTAGAAATGGTTGTTGT+TGG - chr1.1:43881466-43881485 None:intergenic 30.0%
! ATCTTATTCAACTAGCTTAC+TGG + chr1.1:43882959-43882978 MS.gene034731:intron 30.0%
! GCGTGAATTTGAAACTTAAA+AGG + chr1.1:43881928-43881947 MS.gene034731:intron 30.0%
! TTTAGTTCCTCATTCCAAAA+TGG + chr1.1:43881828-43881847 MS.gene034731:intron 30.0%
!! AATGATTTGGTGCTTAATCA+AGG + chr1.1:43882626-43882645 MS.gene034731:intron 30.0%
!! AGGAAATAATGTTGATAGCT+TGG + chr1.1:43883567-43883586 MS.gene034731:CDS 30.0%
!! ATTGAAGGGTTTTGTAGAAA+TGG - chr1.1:43881476-43881495 None:intergenic 30.0%
!!! ATAATGTACTGTTTTTCAGG+AGG + chr1.1:43883465-43883484 MS.gene034731:intron 30.0%
!!! TTTTTGGTTTTGGGATTATG+TGG + chr1.1:43882202-43882221 MS.gene034731:intron 30.0%
AACAAAGAGTCTCCTTGATT+GGG - chr1.1:43881644-43881663 None:intergenic 35.0%
AATGGAAGAATGGGTAGTAA+AGG - chr1.1:43881413-43881432 None:intergenic 35.0%
ACATCACAAATAGAAGCAGA+GGG + chr1.1:43882280-43882299 MS.gene034731:CDS 35.0%
AGTTGGTCCTTGAAATTGTA+GGG - chr1.1:43882152-43882171 None:intergenic 35.0%
CAAATAGGCTCAAACTATAG+AGG + chr1.1:43883135-43883154 MS.gene034731:CDS 35.0%
CTAGCAGAGTCCAATTATAA+TGG + chr1.1:43883027-43883046 MS.gene034731:intron 35.0%
GAAGAGGGTTGAATAATTGA+GGG - chr1.1:43881504-43881523 None:intergenic 35.0%
GAAGCAATTCGAATGTTTGA+TGG + chr1.1:43882342-43882361 MS.gene034731:CDS 35.0%
GATAGTGCAGGTTGTTTATA+AGG - chr1.1:43882483-43882502 None:intergenic 35.0%
GATGAGTGAAATGGAAGAAT+GGG - chr1.1:43881422-43881441 None:intergenic 35.0%
TATGATGTTGTACAGACAGT+TGG + chr1.1:43883057-43883076 MS.gene034731:intron 35.0%
TCATGGAATGAAAATGAAGG+AGG - chr1.1:43881532-43881551 None:intergenic 35.0%
TCCTCATGGAATGAAAATGA+AGG - chr1.1:43881535-43881554 None:intergenic 35.0%
TGAAGAGGGTTGAATAATTG+AGG - chr1.1:43881505-43881524 None:intergenic 35.0%
TGATGAGTGAAATGGAAGAA+TGG - chr1.1:43881423-43881442 None:intergenic 35.0%
TTTCATACACTTCTGATCCA+AGG + chr1.1:43881970-43881989 MS.gene034731:intron 35.0%
! AAGTTGGTCCTTGAAATTGT+AGG - chr1.1:43882153-43882172 None:intergenic 35.0%
! AGGGTTTGCATTTGTTACAA+TGG + chr1.1:43882299-43882318 MS.gene034731:CDS 35.0%
! GGGTTTGCATTTGTTACAAT+GGG + chr1.1:43882300-43882319 MS.gene034731:CDS 35.0%
! GGTTTGCATTTGTTACAATG+GGG + chr1.1:43882301-43882320 MS.gene034731:CDS 35.0%
! TCCTTCATTTTCATTCCATG+AGG + chr1.1:43881531-43881550 MS.gene034731:CDS 35.0%
! TTCATTTTCATTCCATGAGG+AGG + chr1.1:43881534-43881553 MS.gene034731:CDS 35.0%
! TTGATTCTGCTTCCTGTTTT+AGG - chr1.1:43881621-43881640 None:intergenic 35.0%
!! TTTTAGGTCTGAGTTCTGTA+AGG - chr1.1:43881605-43881624 None:intergenic 35.0%
AAAAGTTGAAGAGTCTGTGG+TGG - chr1.1:43881390-43881409 None:intergenic 40.0%
AAAGTGTGCCAAAATCATGG+TGG + chr1.1:43882428-43882447 MS.gene034731:intron 40.0%
AAGATCTATGCTGGAAACCT+TGG + chr1.1:43883177-43883196 MS.gene034731:CDS 40.0%
AAGCAGAATCAACCCAATCA+AGG + chr1.1:43881629-43881648 MS.gene034731:CDS 40.0%
AATATTGATATGGGGGCTCT+AGG + chr1.1:43882117-43882136 MS.gene034731:intron 40.0%
ACAGAACTCAGACCTAAAAC+AGG + chr1.1:43881606-43881625 MS.gene034731:CDS 40.0%
ACAGCCAAATTCAGTCGTAA+AGG - chr1.1:43883502-43883521 None:intergenic 40.0%
AGGAAAAGTTGAAGAGTCTG+TGG - chr1.1:43881393-43881412 None:intergenic 40.0%
AGTGCAGGTTGTTTATAAGG+AGG - chr1.1:43882480-43882499 None:intergenic 40.0%
AGTTGGAGGTAGGGTTATTA+AGG + chr1.1:43883074-43883093 MS.gene034731:CDS 40.0%
CAACAAAGAGTCTCCTTGAT+TGG - chr1.1:43881645-43881664 None:intergenic 40.0%
CAATCAAGGAGACTCTTTGT+TGG + chr1.1:43881643-43881662 MS.gene034731:CDS 40.0%
CCAAATTCAGTCGTAAAGGT+CGG - chr1.1:43883498-43883517 None:intergenic 40.0%
GACACGTGTCTATGTATGTA+CGG + chr1.1:43882007-43882026 MS.gene034731:intron 40.0%
GACATCACAAATAGAAGCAG+AGG + chr1.1:43882279-43882298 MS.gene034731:CDS 40.0%
GGTATAAATTTGGCCCTGTT+TGG + chr1.1:43882706-43882725 MS.gene034731:intron 40.0%
GTGCAGGTTGTTTATAAGGA+GGG - chr1.1:43882479-43882498 None:intergenic 40.0%
GTTAAGGGTGATGAGTGAAA+TGG - chr1.1:43881431-43881450 None:intergenic 40.0%
TCAATTACCGAAGGAGATGA+AGG - chr1.1:43883538-43883557 None:intergenic 40.0%
TCCAAAGAGTTGAGCCAATT+GGG - chr1.1:43881695-43881714 None:intergenic 40.0%
TGAATTTGGCTGTGGATAAC+AGG + chr1.1:43883509-43883528 MS.gene034731:CDS 40.0%
TGCAAAGTGTGCCAAAATCA+TGG + chr1.1:43882425-43882444 MS.gene034731:intron 40.0%
TGGAATGAAAATGAAGGAGG+TGG - chr1.1:43881529-43881548 None:intergenic 40.0%
TGGGAAGAAGACAGTGAAAA+TGG - chr1.1:43881676-43881695 None:intergenic 40.0%
TTCACTGTCTTCTTCCCAAT+TGG + chr1.1:43881678-43881697 MS.gene034731:CDS 40.0%
TTCCAGCATAGATCTTGTGA+GGG - chr1.1:43883173-43883192 None:intergenic 40.0%
TTTACGACTGAATTTGGCTG+TGG + chr1.1:43883501-43883520 MS.gene034731:CDS 40.0%
TTTCCAGCATAGATCTTGTG+AGG - chr1.1:43883174-43883193 None:intergenic 40.0%
! ATTGTTGTTCTTCCTCCTCA+TGG - chr1.1:43881549-43881568 None:intergenic 40.0%
! CAAGACTACCACCATGATTT+TGG - chr1.1:43882439-43882458 None:intergenic 40.0%
! GTAGGCAAAAGGGTACAAAT+AGG + chr1.1:43883120-43883139 MS.gene034731:CDS 40.0%
! GTTGCTTTGAGTGCTATGAA+CGG + chr1.1:43883342-43883361 MS.gene034731:CDS 40.0%
! TCAAGGACCAACTTGAGTTT+TGG + chr1.1:43882159-43882178 MS.gene034731:intron 40.0%
! TCTGGTGTCCGTGATTATTT+TGG + chr1.1:43882094-43882113 MS.gene034731:intron 40.0%
! TGCAATTTGAGGGACCATTT+TGG - chr1.1:43881845-43881864 None:intergenic 40.0%
! TGTACCCTTTTGCCTACTTT+GGG - chr1.1:43883117-43883136 None:intergenic 40.0%
! TTGTACCCTTTTGCCTACTT+TGG - chr1.1:43883118-43883137 None:intergenic 40.0%
!! AAAGGCTTCTCTAAGATCCT+GGG - chr1.1:43883217-43883236 None:intergenic 40.0%
!!! ACTGTTTTTCAGGAGGTTCA+AGG + chr1.1:43883472-43883491 MS.gene034731:intron 40.0%
AACGGAAAATCTCGCGGATA+TGG + chr1.1:43883285-43883304 MS.gene034731:CDS 45.0%
AAGTGCCCAAAGTAGGCAAA+AGG + chr1.1:43883109-43883128 MS.gene034731:CDS 45.0%
AATGAAGGAGGTGGATGAAG+AGG - chr1.1:43881520-43881539 None:intergenic 45.0%
AGGAACAACGGAAAATCTCG+CGG + chr1.1:43883279-43883298 MS.gene034731:CDS 45.0%
AGTGCCCAAAGTAGGCAAAA+GGG + chr1.1:43883110-43883129 MS.gene034731:CDS 45.0%
ATGAAGGAGGTGGATGAAGA+GGG - chr1.1:43881519-43881538 None:intergenic 45.0%
CATAGACACGTGTCAGACAT+TGG - chr1.1:43882001-43882020 None:intergenic 45.0%
CCGACCTTTACGACTGAATT+TGG + chr1.1:43883495-43883514 MS.gene034731:CDS 45.0%
CTATGCTGGAAACCTTGGTT+GGG + chr1.1:43883182-43883201 MS.gene034731:CDS 45.0%
CTCCAAAGAGTTGAGCCAAT+TGG - chr1.1:43881696-43881715 None:intergenic 45.0%
GATGTTGTACAGACAGTTGG+AGG + chr1.1:43883060-43883079 MS.gene034731:intron 45.0%
GTCGTCTACGAAAGGAACAA+CGG + chr1.1:43883267-43883286 MS.gene034731:CDS 45.0%
TAAGCCTGATTGCTCAGCAA+AGG - chr1.1:43883235-43883254 None:intergenic 45.0%
TCTATGCTGGAAACCTTGGT+TGG + chr1.1:43883181-43883200 MS.gene034731:CDS 45.0%
TGGAAATGTTGTGTCTGTGG+AGG + chr1.1:43881720-43881739 MS.gene034731:CDS 45.0%
TGGTCTGTGTGGGAAGTTAA+GGG - chr1.1:43881446-43881465 None:intergenic 45.0%
TGTACAGACAGTTGGAGGTA+GGG + chr1.1:43883065-43883084 MS.gene034731:intron 45.0%
TGTCTCTTTCGAAACTGCTG+AGG + chr1.1:43883311-43883330 MS.gene034731:CDS 45.0%
TTGGTCTGTGTGGGAAGTTA+AGG - chr1.1:43881447-43881466 None:intergenic 45.0%
TTGTACAGACAGTTGGAGGT+AGG + chr1.1:43883064-43883083 MS.gene034731:intron 45.0%
! AGGTGTTGTCGTGTTATGTC+TGG + chr1.1:43882076-43882095 MS.gene034731:intron 45.0%
! ATGGTTGTTGTTGGTCTGTG+TGG - chr1.1:43881457-43881476 None:intergenic 45.0%
! ATTGGCTCAACTCTTTGGAG+AGG + chr1.1:43881696-43881715 MS.gene034731:CDS 45.0%
! ATTTGTTACAATGGGGAGCG+TGG + chr1.1:43882308-43882327 MS.gene034731:CDS 45.0%
! TCCCAATTGGCTCAACTCTT+TGG + chr1.1:43881691-43881710 MS.gene034731:CDS 45.0%
! TGGTTGTTGTTGGTCTGTGT+GGG - chr1.1:43881456-43881475 None:intergenic 45.0%
!! CAAAGGCTTCTCTAAGATCC+TGG - chr1.1:43883218-43883237 None:intergenic 45.0%
!!! TGAGGGACCATTTTGGAATG+AGG - chr1.1:43881838-43881857 None:intergenic 45.0%
!!! TAATAAATTTAAGATATTTT+TGG + chr1.1:43882186-43882205 MS.gene034731:intron 5.0%
AAGAGTCTGTGGTGGCAGAT+AGG - chr1.1:43881382-43881401 None:intergenic 50.0%
AATCAGGCTTACTGAGTGCC+AGG + chr1.1:43883244-43883263 MS.gene034731:CDS 50.0%
AGAGTCTGTGGTGGCAGATA+GGG - chr1.1:43881381-43881400 None:intergenic 50.0%
AGCCCTCACAAGATCTATGC+TGG + chr1.1:43883168-43883187 MS.gene034731:CDS 50.0%
ATCAGGCTTACTGAGTGCCA+GGG + chr1.1:43883245-43883264 MS.gene034731:CDS 50.0%
CAGGAAGCCTTCATCTCCTT+CGG + chr1.1:43883528-43883547 MS.gene034731:CDS 50.0%
CCTGCACTATCACTTGAACC+TGG + chr1.1:43882492-43882511 MS.gene034731:intron 50.0%
CGAAACTGCTGAGGATGTAG+AGG + chr1.1:43883320-43883339 MS.gene034731:CDS 50.0%
GAAGCCTTTGCTGAGCAATC+AGG + chr1.1:43883228-43883247 MS.gene034731:CDS 50.0%
GGCTGGAAATGTTGTGTCTG+TGG + chr1.1:43881717-43881736 MS.gene034731:CDS 50.0%
GGGAAGTCATATCCCAACCA+AGG - chr1.1:43883197-43883216 None:intergenic 50.0%
TGCCTACTTTGGGCACTTCT+GGG - chr1.1:43883107-43883126 None:intergenic 50.0%
TGGTTGGGATATGACTTCCC+AGG + chr1.1:43883197-43883216 MS.gene034731:CDS 50.0%
TTGCCTACTTTGGGCACTTC+TGG - chr1.1:43883108-43883127 None:intergenic 50.0%
TTTGAGTGCTATGAACGGCG+TGG + chr1.1:43883347-43883366 MS.gene034731:CDS 50.0%
! CCAGGTTCAAGTGATAGTGC+AGG - chr1.1:43882495-43882514 None:intergenic 50.0%
! GTTTATAAGGAGGGTGCAGC+AGG - chr1.1:43882470-43882489 None:intergenic 50.0%
!! TTCCCAGAAGTGCCCAAAGT+AGG + chr1.1:43883102-43883121 MS.gene034731:CDS 50.0%
GTCAGACATTGGACACGCCT+TGG - chr1.1:43881990-43882009 None:intergenic 55.0%
GTTCCTTTCGTAGACGACCC+TGG - chr1.1:43883265-43883284 None:intergenic 55.0%
TCTGTGGTGGCAGATAGGGA+AGG - chr1.1:43881377-43881396 None:intergenic 55.0%
! GCTCAACTCTTTGGAGAGGC+TGG + chr1.1:43881700-43881719 MS.gene034731:CDS 55.0%
! TGTTACAATGGGGAGCGTGG+AGG + chr1.1:43882311-43882330 MS.gene034731:CDS 55.0%
GTGCCAGGGTCGTCTACGAA+AGG + chr1.1:43883259-43883278 MS.gene034731:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 43881352 43883615 43881352 ID=MS.gene034731
chr1.1 mRNA 43881352 43883615 43881352 ID=MS.gene034731.t1;Parent=MS.gene034731
chr1.1 exon 43881352 43881741 43881352 ID=MS.gene034731.t1.exon1;Parent=MS.gene034731.t1
chr1.1 CDS 43881352 43881741 43881352 ID=cds.MS.gene034731.t1;Parent=MS.gene034731.t1
chr1.1 exon 43882267 43882368 43882267 ID=MS.gene034731.t1.exon2;Parent=MS.gene034731.t1
chr1.1 CDS 43882267 43882368 43882267 ID=cds.MS.gene034731.t1;Parent=MS.gene034731.t1
chr1.1 exon 43883072 43883368 43883072 ID=MS.gene034731.t1.exon3;Parent=MS.gene034731.t1
chr1.1 CDS 43883072 43883368 43883072 ID=cds.MS.gene034731.t1;Parent=MS.gene034731.t1
chr1.1 exon 43883484 43883615 43883484 ID=MS.gene034731.t1.exon4;Parent=MS.gene034731.t1
chr1.1 CDS 43883484 43883615 43883484 ID=cds.MS.gene034731.t1;Parent=MS.gene034731.t1
Gene Sequence

>MS.gene034731

ATGGCTAGTGCAAGCACTGGTTCCTTCCCTATCTGCCACCACAGACTCTTCAACTTTTCCTTTACTACCCATTCTTCCATTTCACTCATCACCCTTAACTTCCCACACAGACCAACAACAACCATTTCTACAAAACCCTTCAATCTAATCCCTCAATTATTCAACCCTCTTCATCCACCTCCTTCATTTTCATTCCATGAGGAGGAAGAACAACAATACTCTGAATCTGAATCTGAAACTGAAATTGAAACCTTACAGAACTCAGACCTAAAACAGGAAGCAGAATCAACCCAATCAAGGAGACTCTTTGTTGGAAACTTGCCATTTTCACTGTCTTCTTCCCAATTGGCTCAACTCTTTGGAGAGGCTGGAAATGTTGTGTCTGTGGAGGTTTTCTTTGACCCTTTTCAGTTTTGATCATTGTTTGTTTCATATATGAGGAAATACTCAAACTAGTCATTGTAAAGTTGCATTAATTTAGTTCCTCATTCCAAAATGGTCCCTCAAATTGCAAAATTTTAATCAATTTAGTTGATACTTTGTAGGATTAGAATGACATTAAATTGAAACTATTGCGCGTGAATTTGAAACTTAAAAGGGAATAATGTTAAAGTTTCATTTCATACACTTCTGATCCAAGGCGTGTCCAATGTCTGACACGTGTCTATGTATGTACGGACAGATGTGATTACATTCAATTATGTCATTTTTTTTAAATTACTATAGGTGTTGTCGTGTTATGTCTGGTGTCCGTGATTATTTTGGAATATTGATATGGGGGCTCTAGGTTGATAAAACCCTACAATTTCAAGGACCAACTTGAGTTTTGGCTTTTAATAAATTTAAGATATTTTTGGTTTTGGGATTATGTGGTGATCTTGTTTGTACCTATTTTGTTTGATTTGAGTTATGCAGATTGTGTATGATGACATCACAAATAGAAGCAGAGGGTTTGCATTTGTTACAATGGGGAGCGTGGAGGATGCTGAAGAAGCAATTCGAATGTTTGATGGCACTGTAAGTCTCGATTGTTGATTACATTTTAAATATGGTATGATTGTGAAAATAAAGATTGCAAAGTGTGCCAAAATCATGGTGGTAGTCTTGCACAACAACCTGCTGCACCCTCCTTATAAACAACCTGCACTATCACTTGAACCTGGTTTATTAATTATTTAGTTTTGATGTTTTAATTAACACTGTCTTAGATTAGTATATAGTATGGTAATTTATTAATGTATTCTATTATAGATGAAGATGGACATTTAGACCATAATGATTTGGTGCTTAATCAAGGCTTAGTTGAAAATTAGTTAGGGCCAGTATCTTGTTTTCTTGTCTTATTATCATTTTGGGTATAAATTTGGCCCTGTTTGGATAAATAGCTTATTTAAGTATTTATATCATAAGTGCTTATCTATAAGTTATTTCTATAACAATATTAAATACAGTCAATCTTTCTCATATAAGCTATTATAGAGAGCTTATGCAAATAAGTTGAAATCATCTTATGGACATGTAGTCAGTTGATAAGTTTTAATAAGTCAACTCAAACAGACCAATAAATCATTTGGGAGATACCTATATCTTTTCTTGATTTAAGAAATATCTTATTCAACTAGCTTACTGGTCCAAATTGTCAATTGCAACTCTATTGTTTACTGCATTGAACAAACTAGCAGAGTCCAATTATAATGGTAATGGCTATGATGTTGTACAGACAGTTGGAGGTAGGGTTATTAAGGTGAACTTCCCAGAAGTGCCCAAAGTAGGCAAAAGGGTACAAATAGGCTCAAACTATAGAGGTTATGTTGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGATATGACTTCCCAGGATCTTAGAGAAGCCTTTGCTGAGCAATCAGGCTTACTGAGTGCCAGGGTCGTCTACGAAAGGAACAACGGAAAATCTCGCGGATATGGATTTGTCTCTTTCGAAACTGCTGAGGATGTAGAGGTTGCTTTGAGTGCTATGAACGGCGTGGTATGAGTGAACAACTTTTGTCCATTATTAGTTGTGCAAATTTTGTTCATCTTGTGATATTTCAATCTAATAACTATGTAACATTTTTTTGTGTGTATAATGTACTGTTTTTCAGGAGGTTCAAGGCCGACCTTTACGACTGAATTTGGCTGTGGATAACAGGAAGCCTTCATCTCCTTCGGTAATTGATCAAAATAAAGGAAATAATGTTGATAGCTTGGAAATGTTATTTGGAATAAGCAAATGA
Protein sequence

>MS.gene034731.t1

MASASTGSFPICHHRLFNFSFTTHSSISLITLNFPHRPTTTISTKPFNLIPQLFNPLHPPPSFSFHEEEEQQYSESESETEIETLQNSDLKQEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEIVYDDITNRSRGFAFVTMGSVEDAEEAIRMFDGTTVGGRVIKVNFPEVPKVGKRVQIGSNYRGYVDSPHKIYAGNLGWDMTSQDLREAFAEQSGLLSARVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLNLAVDNRKPSSPSVIDQNKGNNVDSLEMLFGISK