AlfalfaGEDB | MS.gene058521

M. sativa cultivar XinJiangDaYe / MS.gene058521

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058521.t1	XP_003624053.1	98.4	491	8	0	1	491	1	491	1.10E-279	971.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058521.t1	Q3EDL4	69.7	495	122	7	1	491	1	471	1.0e-191	671.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058521.t1	G7L6L4	98.4	491	8	0	1	491	1	491	8.3e-280	971.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene058521	MS.gene058522	0.888848	4.10E-73	-1.69E-46
MS.gene058521	MS.gene058523	0.949937	4.62E-108	-1.69E-46
MS.gene058521	MS.gene058655	0.819865	9.28E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene002503	MS.gene058521	PPI
MS.gene01476	MS.gene058521	PPI
MS.gene027160	MS.gene058521	PPI
MS.gene027928	MS.gene058521	PPI
MS.gene027931	MS.gene058521	PPI
MS.gene027936	MS.gene058521	PPI
MS.gene032779	MS.gene058521	PPI
MS.gene034731	MS.gene058521	PPI
MS.gene047358	MS.gene058521	PPI
MS.gene051305	MS.gene058521	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058521.t1	MTR_7g078730	98.371	491	8	0	1	491	1	491	0.0	992
MS.gene058521.t1	MTR_8g028695	73.577	492	106	7	1	488	1	472	0.0	692
MS.gene058521.t1	MTR_5g017080	62.907	461	143	4	1	444	1	450	0.0	560
MS.gene058521.t1	MTR_3g116590	58.508	429	151	6	17	445	17	418	4.18e-173	494
MS.gene058521.t1	MTR_3g116590	58.824	425	148	6	17	441	17	414	2.15e-172	493
MS.gene058521.t1	MTR_5g091380	55.932	472	178	7	9	453	7	475	6.96e-171	491
MS.gene058521.t1	MTR_7g111690	54.468	470	174	7	6	436	2	470	1.43e-169	488
MS.gene058521.t1	MTR_4g123880	49.016	508	222	8	9	491	5	500	2.28e-169	487
MS.gene058521.t1	MTR_3g047890	53.862	479	177	5	9	454	7	474	6.59e-167	481
MS.gene058521.t1	MTR_4g069970	71.661	307	87	0	139	445	118	424	8.39e-167	479

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058521.t1	AT4G01330	73.292	483	113	7	1	476	3	476	0.0	697
MS.gene058521.t1	AT4G01330	73.140	484	113	7	1	476	3	477	0.0	694
MS.gene058521.t1	AT1G01540	76.222	450	90	8	1	445	1	438	0.0	692
MS.gene058521.t1	AT4G01330	76.510	447	92	5	1	441	3	442	0.0	685
MS.gene058521.t1	AT1G01540	76.393	377	72	8	1	372	1	365	0.0	565
MS.gene058521.t1	AT4G02630	60.736	489	166	7	3	477	1	477	0.0	556
MS.gene058521.t1	AT4G34500	58.998	439	157	8	18	451	17	437	8.39e-174	496
MS.gene058521.t1	AT2G42960	54.584	469	173	6	9	445	7	467	1.59e-167	482
MS.gene058521.t1	AT2G42960	54.584	469	173	6	9	445	7	467	1.59e-167	482
MS.gene058521.t1	AT2G42960	54.584	469	173	6	9	445	7	467	1.59e-167	482

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Find 0 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTGATAAGGTTTCAAG+TGG	-	50228:11155-11174	MS.gene058521:intron	30.0%
AACATAACTACAGAAAGAAC+AGG	+	50228:13457-13476	MS.gene058521:intergenic	30.0%
AAGAGTGATGTTTATAGCTT+TGG	-	50228:13513-13532	MS.gene058521:intron	30.0%
AAGAGTTATCATTTAAGTGG+GGG	-	50228:12510-12529	MS.gene058521:CDS	30.0%
AATACGCATGAACGTTATAT+TGG	-	50228:13034-13053	MS.gene058521:intron	30.0%
AATATATTCTGGGCAGTATA+TGG	-	50228:12373-12392	MS.gene058521:intron	30.0%
AGAGTGATGTTTATAGCTTT+GGG	-	50228:13514-13533	MS.gene058521:intron	30.0%
AGTTGTGACATAACTATTCT+CGG	+	50228:13292-13311	MS.gene058521:intergenic	30.0%
ATACGCATGAACGTTATATT+GGG	-	50228:13035-13054	MS.gene058521:intron	30.0%
ATTGATATTGTGTGAATCCA+GGG	-	50228:11856-11875	MS.gene058521:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
50228	gene	10843	14490	10843	ID=MS.gene058521
50228	mRNA	10843	14490	10843	ID=MS.gene058521.t1;Parent=MS.gene058521
50228	exon	13907	14490	13907	ID=MS.gene058521.t1.exon1;Parent=MS.gene058521.t1
50228	CDS	13907	14490	13907	ID=cds.MS.gene058521.t1;Parent=MS.gene058521.t1
50228	exon	12480	12584	12480	ID=MS.gene058521.t1.exon2;Parent=MS.gene058521.t1
50228	CDS	12480	12584	12480	ID=cds.MS.gene058521.t1;Parent=MS.gene058521.t1
50228	exon	12264	12386	12264	ID=MS.gene058521.t1.exon3;Parent=MS.gene058521.t1
50228	CDS	12264	12386	12264	ID=cds.MS.gene058521.t1;Parent=MS.gene058521.t1
50228	exon	12002	12172	12002	ID=MS.gene058521.t1.exon4;Parent=MS.gene058521.t1
50228	CDS	12002	12172	12002	ID=cds.MS.gene058521.t1;Parent=MS.gene058521.t1
50228	exon	11734	11863	11734	ID=MS.gene058521.t1.exon5;Parent=MS.gene058521.t1
50228	CDS	11734	11863	11734	ID=cds.MS.gene058521.t1;Parent=MS.gene058521.t1
50228	exon	11247	11456	11247	ID=MS.gene058521.t1.exon6;Parent=MS.gene058521.t1
50228	CDS	11247	11456	11247	ID=cds.MS.gene058521.t1;Parent=MS.gene058521.t1
50228	exon	10843	10995	10843	ID=MS.gene058521.t1.exon7;Parent=MS.gene058521.t1
50228	CDS	10843	10995	10843	ID=cds.MS.gene058521.t1;Parent=MS.gene058521.t1

Gene Sequence

>MS.gene058521

ATGTCGATCTTCGATGGAACATTCCTCAACACACAACTCTCCAAACACACATCGATCTTCGGTCTCCGTCTATGGGTCGTCATCGGAATCTTAATCGGGGTCGCAATCGTCTTCATCCTTTTCTTAATCTCTCTCTGTGTAGTTTCACGTCGCCGTCACCGCCGTACCGGAGACTACAAAATCACCGGAGCTGCACCAGCTAAAGAAATCCAAGAGATCGTGCATGTTCCAGGTCCACATATGCTCCGACGACCAACTCCGGTACCGGAGATCCACGTGGACATTGGAAGACAAGAGCATCGTGTGGTTGTTAAATCTGATAAGGTTTCAAGTGGTGAGAGTAAGGGAACAGTGGGAAGCGGGTGTGAAACGACGTCGTCTTTTGGAAGTGGTAGTGTTGGTGGGATTGGTCCTGAAGTGTCACATCTTGGGTGGGGTAGATGGTATACTTTGAGAGAGCTTGAAGATGCTACTGGTGGATTGTGTCCTGAAAATGTTCTTGGTGAAGGTGGTTATGGAATTGTTTATCATGGTGTTCTTACTGATGGTACTAAAGTTGCTGTCAAAAACCTCTTGAATAACAAGTATGTGTGTATTTTTGAAATTCATTGTTTGGTTTTTAATTGTGTTTTGTTTTTATGTACTTGAATTTGGTTTTGACTAGTGAATTTGACTCTATCCTGTTTTCTATGTATAGTTTGTGTTCAAAGTTTGAGTTTTGCTTATGCTTGGAATTTGGAGTGTAGTTAAGAATTCTATACAAAATTGAACTGTCTAATTTAGTTAACATTGATTACATGTTTCTGTGTTTGATTCTGTGTCATTTTTTTTGAATGGCAGATTCTGTGTCATTTACTATTAGTATTTGTTTGGTTTATAGCTGTGATCATTTTCTGTTGTGTTTGTTGTGTGATGACTGATGAATGTTGACATATTGTTATCTTAGATATGCAATTTCAACCTTGCATTAGCTGCTTTTCCTTGATTTGGTTAAATTCATTTGTATAGAGCTCATTGATATTGTGTGAATCCAGGGAGGACGAAACAAATGAATTTTTATTTGTTCTCTTTGGTTAAAGTTTTTGCTCAAAATACATAACGCGACGAAAGATAATGAAATTTAAATGGATGTTTGTGTGAAAACGTTTCTGTTATGTTTTCACCATTAGATTATGCTTTATTAAATCCATGATTAATTGCATCTTCTATAATTTGAATGATTTAAGACATATAATTGTTCCTTGTTGTCTTTAAGTCTTCAATAATTTGCCTGTTGGCAACCAACCGTATAATTGCTCCATGGAATGATAAAACAAATGTTTTTTTATTTGTTATGTTTGTTTCTGAAAAGCTTAATGAAGTTTTTGCTTAAAACACACAACGTGACGGAATATAAATGGATGTTTGTGTGAAAAAGTTTCTATCAAATTCATAATTAATTGCATCTTCTATAATTTTAATGTTTAAGGCATACAATTGTTCCTTGTTGTCTTTAAGTCTTCAATGATTTTCCTCGTTTGCAACCAAGGAAATATATTCTGGGCAGTATATGGAGCAGGCAGCAACATCAACTTTTTTTTTATGTAGGCCAGTATTTTCATTTTACTTTCACTAGTGTTTCCACTTTTAACTTTTTATTTTTTGTGTTATCCTTATCTTGCATCCTTAAGAGTTATCATTTAAGTGGGGGCTCACTCATGCCATGTGATGAAAATAATCAATTTTCTTTTCAGCTTTTTGTTAGCACTTGTTTGGAGTTTTGCATTCTCATGTATATTGCTGGATTTCCTTTCAATATTTTTTACTTTTAAATTAATTCAACTTGCTGTTAGTGAAGGTTCCTTGGTCCCGGTCTTGTATTGTCTTCTTCTTGCTAACAAGTACTTAATGTTTAACTTCTTCATAGGGGCCAAGCTGAGAAAGAATTCAAAGTAGAGGTAGAAGCAATTGGTCGAGTACGACACAAAAATCTTGTTAGGCTGCTTGGATATTGTGTTGAAGGGGCCTACAGGTACTTTATATAATTTTCTTAATAATTGAGGCTACCAATTTGTTTGTTTTGAAGAGATGTACGATATGAAACATGGTATTATTGTTTTTGCAGGATGCTTGTGTATGAATATGTGGACAATGGCAATCTTGAACAGTGGTTGCATGGGGATGTTGGACCTGTAAGCCCTTTGACATGGGAAATACGCATGAACGTTATATTGGGAACAGCCAGAGGGTATCATATTTGTGATTTATGTACACATTGTAATTCATGTCAATTCAGGAATGTTTTGGTCACCGTGCTTTTTTTATTTGTATCTTTTCAGATTGGCCTATCTACATGAGGGTCTTGAACCAAAGGTTGTTCATCGAGATGTGAAGTCAAGTAACATCCTCCTTGATCGCCAATGGAACTCCAAGGTTTCTGATTTCGGGCTTGCCAAGCTTTTGAATTCCGAGAATAGTTATGTCACAACTCGAGTGATGGGGACATTTGGGTTAGTATGATCAAGCTATTATTTTTAAGTTCCTGTATTTTTGTAATGTGCATGATTAGTCAATATTACTCTCAACTTGTCACGTTTTCGAGCGGTAAAAAGATAGTGATTCTCTTGTATGTCCTGTTCTTTCTGTAGTTATGTTGCACCAGAATATGCATGCACTGGAATGCTGACCGAGAAGAGTGATGTTTATAGCTTTGGGATACTAATCATGGAGCTAATTACTGGGAGAAGTCCCGTTGATTATGGTAGACCTCAAGGAGAGGTTAGAGACTATCACTAACAACATTTTAGAGCTATGAAGCACTGACGCACAAACACCTAACATGACACTGACACTTCAACACTGATAATGATAATTTGAGAATATGTAAATTATTGAATATAACCACATAGTTAGTGTCGTGTTGGTCTCAGACACCAACAGACACATTCAATTTGAAGTGTCGGTGCTATATAGGTTTAGAGACAGTTCATACCACACTTATCAATCTAGTATTCTCTTTTTTTGGGGCTAACTATTTGTGTTGGTGTGATTACAGGTCAATTTAATAGAGTGGTTGAAGACTATGGTTGGTAATAGAAAAGCTGAGGAAGTAGTTGATCCTAAGCTACCTGAGTTGCCATCTTCAAAAGCTCTTAAACGCGCTCTGTTAATCGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCTAAAATGGGACATGTGATTCACATGCTTGAGGCAGACGACCTCTTATTCCATAATGTATGTTCGTTGACTATACTAAAAAGCAATCACACTGATATAAGAGTTTAATTTTTATTCACTGTTAGTGTAGAATTTTTTACACCGTCAACCATCACAGATCATGTTAAAGTCAAACATTTTCAATGATGTTGCTATATATTATTTGGCTGCCGGTATATAAAGTATCTACACTGACAATGCATATCAGTTAAATTCTTGATATAATCGTATAATTTGATACTCACAACTTTTGTTCATCTGGTTTATAGGATCGCAAAACTGGGGGAGAGTCTTCGCGATCTCTTAATGAGTTTCAACCAGAGCTTGAGGACTCAAATTTGGATAAGAGAACAGATGAAGGAATCAGTGGTCAAAGTGAACATGGTAGTGGTAGAAATAATAATCATCAGTCTAGGAGATGA

Protein sequence

>MS.gene058521.t1

MSIFDGTFLNTQLSKHTSIFGLRLWVVIGILIGVAIVFILFLISLCVVSRRRHRRTGDYKITGAAPAKEIQEIVHVPGPHMLRRPTPVPEIHVDIGRQEHRVVVKSDKVSSGESKGTVGSGCETTSSFGSGSVGGIGPEVSHLGWGRWYTLRELEDATGGLCPENVLGEGGYGIVYHGVLTDGTKVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWEIRMNVILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLNSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMELITGRSPVDYGRPQGEVNLIEWLKTMVGNRKAEEVVDPKLPELPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNDRKTGGESSRSLNEFQPELEDSNLDKRTDEGISGQSEHGSGRNNNHQSRR