AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034914

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034914.t1 MTR_1g057810 59.860 573 183 11 21 564 6 560 0.0 591
MS.gene034914.t1 MTR_1g101950 83.871 341 50 3 229 568 4 340 0.0 569
MS.gene034914.t1 MTR_1g105150 57.766 573 181 12 21 564 6 546 0.0 555
MS.gene034914.t1 MTR_6g089480 78.864 317 63 2 256 571 1 314 3.30e-177 503
MS.gene034914.t1 MTR_1g069490 62.704 429 129 6 142 568 2 401 1.09e-172 495
MS.gene034914.t1 MTR_6g089480 79.636 275 52 2 256 529 1 272 1.02e-152 439
MS.gene034914.t1 MTR_6g089480 80.220 273 50 2 256 527 1 270 1.34e-152 439
MS.gene034914.t1 MTR_1g069745 77.083 288 54 2 284 571 16 291 1.14e-148 429
MS.gene034914.t1 MTR_5g079460 66.964 336 104 5 232 564 48 379 4.63e-146 426
MS.gene034914.t1 MTR_7g075860 60.188 319 121 3 249 564 41 356 4.80e-128 379
MS.gene034914.t1 MTR_1g076850 58.176 318 127 4 249 565 8 320 1.15e-126 375
MS.gene034914.t1 MTR_4g067310 59.877 324 124 4 247 569 13 331 1.62e-126 374
MS.gene034914.t1 MTR_2g098950 57.485 334 132 5 233 565 2 326 3.97e-126 373
MS.gene034914.t1 MTR_1g054730 54.321 324 108 3 242 565 104 387 7.13e-98 303
MS.gene034914.t1 MTR_1g054730 54.795 73 21 2 67 127 86 158 1.06e-13 73.6
MS.gene034914.t1 MTR_0046s0180 81.553 103 19 0 463 565 7 109 1.00e-52 175
MS.gene034914.t1 MTR_8g096570 50.617 162 66 3 51 199 72 232 2.62e-40 156
MS.gene034914.t1 MTR_5g044990 27.988 343 214 6 249 560 210 550 3.63e-36 142
MS.gene034914.t1 MTR_4g019165 29.096 354 208 7 249 559 93 446 5.60e-34 135
MS.gene034914.t1 MTR_1g069480 52.212 113 38 5 83 180 4 115 1.43e-21 90.5
MS.gene034914.t1 MTR_0046s0210 38.750 160 62 6 175 305 1 153 4.71e-17 79.0
MS.gene034914.t1 MTR_1g071270 39.695 131 43 5 127 222 10 139 1.09e-13 69.7
MS.gene034914.t1 MTR_1g070375 25.914 301 189 9 272 552 108 394 1.30e-11 67.4
MS.gene034914.t1 MTR_1g071290 62.791 43 16 0 85 127 7 49 2.04e-11 60.1
MS.gene034914.t1 MTR_1g070375 25.442 283 179 8 288 552 1 269 4.59e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034914.t1 AT5G51830 71.385 325 89 2 239 562 13 334 1.73e-162 467
MS.gene034914.t1 AT5G51830 71.385 325 89 2 239 562 13 334 1.73e-162 467
MS.gene034914.t1 AT1G66430 63.158 361 122 5 218 571 28 384 9.25e-153 443
MS.gene034914.t1 AT4G10260 61.093 311 115 4 249 558 6 311 2.71e-127 376
MS.gene034914.t1 AT1G06030 57.012 328 135 3 239 565 1 323 3.65e-126 374
MS.gene034914.t1 AT2G31390 57.716 324 131 4 243 565 3 321 1.08e-123 367
MS.gene034914.t1 AT3G59480 57.188 320 131 4 244 562 5 319 4.05e-122 363
MS.gene034914.t1 AT1G06020 56.740 319 132 3 248 565 9 322 1.80e-121 362
MS.gene034914.t1 AT1G50390 47.059 170 59 1 396 565 1 139 5.54e-43 150
MS.gene034914.t1 AT3G54090 30.508 354 202 8 249 559 103 455 2.34e-37 144
MS.gene034914.t1 AT1G69200 27.744 328 205 4 249 545 206 532 3.71e-34 137
MS.gene034914.t1 AT5G63540 42.697 178 85 4 35 199 87 260 5.19e-32 131
MS.gene034914.t1 AT5G63540 42.697 178 85 4 35 199 87 260 7.80e-32 130

Find 113 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTGGAGATTCGTTAAA+TGG 0.186789 1.2:+46397214 MS.gene034914:CDS
TAGCGAAATATAATGCATTT+TGG 0.194932 1.2:-46400720 None:intergenic
TGCGGCGCCTTGTGGATTAA+AGG 0.268903 1.2:+46397577 MS.gene034914:CDS
TTCTAATGCCAGAACCAAAT+TGG 0.269138 1.2:+46399579 MS.gene034914:CDS
AAGTGTAACAAAAGCCAATT+TGG 0.292185 1.2:-46399593 None:intergenic
CAATTAGAAGCTTGAGATTA+GGG 0.296290 1.2:-46400196 None:intergenic
CGAAGTCCACACACCACTTT+TGG 0.300993 1.2:-46398541 None:intergenic
TAGGCTAAAATATTTCATTA+TGG 0.302034 1.2:+46399800 MS.gene034914:intron
TAGGTTGGAGCAGATGAATT+TGG 0.306305 1.2:+46399496 MS.gene034914:intron
ATGCCAACTGCCACGTTTGC+AGG 0.308650 1.2:-46398610 None:intergenic
TCCTAGTGCTGGTATGCTTC+TGG 0.312631 1.2:+46399654 MS.gene034914:CDS
AGGTTGGAGCAGATGAATTT+GGG 0.318393 1.2:+46399497 MS.gene034914:intron
TGGCTTCGATGTTTCCAAAA+AGG 0.321492 1.2:+46397234 MS.gene034914:CDS
CGAATTTGAGATTGGCACTA+TGG 0.327098 1.2:+46399915 MS.gene034914:CDS
CAGCCTTTGCATCAAATTGC+AGG 0.327609 1.2:-46400810 None:intergenic
AGTGGACTGGTTGTTTGTTT+TGG 0.362156 1.2:+46398496 MS.gene034914:CDS
ACAATTAGAAGCTTGAGATT+AGG 0.362928 1.2:-46400197 None:intergenic
GCATACCAGCACTAGGATTT+CGG 0.364200 1.2:-46399648 None:intergenic
CGATGGTCCCTTCATATTGC+AGG 0.369500 1.2:+46397354 MS.gene034914:CDS
AACAAAAGCCAATTTGGTTC+TGG 0.371720 1.2:-46399587 None:intergenic
TGAATTACCTTGAAAATACT+TGG 0.391756 1.2:-46400600 None:intergenic
CAAAGTAATGTTGATAGATC+TGG 0.395171 1.2:+46399544 MS.gene034914:CDS
GCAGTTGGCATCTCTAAGTT+GGG 0.396668 1.2:+46398622 MS.gene034914:CDS
GAAATGGTATAATGAGCATA+TGG 0.397108 1.2:+46399957 MS.gene034914:CDS
ATTATCAATATCGGTTGTAC+AGG 0.412840 1.2:+46397464 MS.gene034914:CDS
GATGGTACTCAAAGAGTCTA+TGG 0.414671 1.2:+46397518 MS.gene034914:CDS
CATAGTGCCAATCTCAAATT+CGG 0.415637 1.2:-46399914 None:intergenic
AGGGACCATCGAGAGTAGTT+TGG 0.418218 1.2:-46397342 None:intergenic
GGCAGTTGGCATCTCTAAGT+TGG 0.428328 1.2:+46398621 MS.gene034914:CDS
AATACAAGATCATCATCATA+AGG 0.442712 1.2:-46400158 None:intergenic
GTATGATCCGAATTTGAGAT+TGG 0.448557 1.2:+46399907 MS.gene034914:CDS
GTGGACGAAATTATCAATAT+CGG 0.448991 1.2:+46397455 MS.gene034914:CDS
TCCAAGTTGGCGAAGACAAT+CGG 0.455066 1.2:-46397200 None:intergenic
CAAACATCAAGGGCTTCAAT+AGG 0.468226 1.2:-46397554 None:intergenic
CCAGCACCAGTTGTGTCAAC+AGG 0.471899 1.2:-46400534 None:intergenic
TTTCTTGAAAGCAGACGCTT+CGG 0.475766 1.2:-46398575 None:intergenic
TCAGCCAAGGCTGCTCGAAA+TGG 0.477826 1.2:+46399941 MS.gene034914:CDS
TATACCATTTCGAGCAGCCT+TGG 0.478840 1.2:-46399945 None:intergenic
AACCAAACCCGAGTTTCAAA+AGG 0.487924 1.2:-46397159 None:intergenic
GGATCTAGCCGATGTCATAA+AGG 0.488434 1.2:+46399979 MS.gene034914:CDS
AAGAAGTGATATCCCAATCA+TGG 0.492354 1.2:+46397989 MS.gene034914:CDS
TTTCGAGCAGCCTTGGCTGA+TGG 0.495317 1.2:-46399938 None:intergenic
GAAACCTACCTGCAATATGA+AGG 0.495646 1.2:-46397362 None:intergenic
GTTGAACCTGTTGACACAAC+TGG 0.496302 1.2:+46400528 MS.gene034914:CDS
CCTGTTGACACAACTGGTGC+TGG 0.498429 1.2:+46400534 MS.gene034914:CDS
TCTAATTGTTACCGAAGGGT+TGG 0.500526 1.2:+46400211 MS.gene034914:CDS
CAGTTGGCATCTCTAAGTTG+GGG 0.501143 1.2:+46398623 MS.gene034914:CDS
AAGGCGCCGCACAAACATCA+AGG 0.501831 1.2:-46397565 None:intergenic
AGATGAATTTGGGTATATGT+TGG 0.503210 1.2:+46399507 MS.gene034914:CDS
TTCGACTGCTTCCGATTCTG+AGG 0.505989 1.2:-46397101 None:intergenic
GCAATCACGGTGACAAAGAG+AGG 0.511886 1.2:+46400754 MS.gene034914:CDS
AGACGTGAAACATGGAAGAT+TGG 0.512232 1.2:+46397728 MS.gene034914:CDS
AAAATTTACCTTTATGACAT+CGG 0.512596 1.2:-46399987 None:intergenic
CTGGTGATGCATTTGTCAGT+GGG 0.517692 1.2:+46400553 MS.gene034914:CDS
GCGTCTGCTTTCAAGAAAGC+TGG 0.519176 1.2:+46398580 MS.gene034914:CDS
AAGCTTCTAATTGTTACCGA+AGG 0.520336 1.2:+46400206 MS.gene034914:CDS
GCCGATTGTCTTCGCCAACT+TGG 0.527403 1.2:+46397199 MS.gene034914:CDS
AGGCTGAACTACAGCGGCTG+AGG 0.530973 1.2:-46397068 None:intergenic
AATTGTTACCGAAGGGTTGG+AGG 0.532531 1.2:+46400214 MS.gene034914:CDS
TAATGTATGTGCCGCAATCA+CGG 0.536513 1.2:+46400741 MS.gene034914:CDS
AGCTTCTAATTGTTACCGAA+GGG 0.537211 1.2:+46400207 MS.gene034914:CDS
TGGCTCATCAATCAAACTCA+TGG 0.538259 1.2:-46399825 None:intergenic
AAATGGTATAATGAGCATAT+GGG 0.538336 1.2:+46399958 MS.gene034914:CDS
ACAACATCATTGATACTGTC+AGG 0.539983 1.2:+46397808 MS.gene034914:CDS
TTAAAGGCACCTTCTTGATG+AGG 0.541433 1.2:-46399699 None:intergenic
TTCATCTGCATTTATAAGCA+AGG 0.542858 1.2:+46398648 MS.gene034914:CDS
AGTATCAATGATGTTGTGAC+TGG 0.544617 1.2:-46397802 None:intergenic
CATTTAACGAATCTCCAAGT+TGG 0.549382 1.2:-46397213 None:intergenic
TCTACAACCCTCCAACCCTT+CGG 0.550265 1.2:-46400222 None:intergenic
AGTTGGCATCTCTAAGTTGG+GGG 0.556296 1.2:+46398624 MS.gene034914:CDS
AAAGCAGACGCTTCGGCTAG+AGG 0.561217 1.2:-46398568 None:intergenic
CATCGGTCATTAACAACTGC+AGG 0.561832 1.2:-46397499 None:intergenic
GAATTACCTTGAAAATACTT+GGG 0.573711 1.2:-46400599 None:intergenic
GGCACTATGGCCATCAGCCA+AGG 0.574030 1.2:+46399928 MS.gene034914:CDS
TCGACTGCTTCCGATTCTGA+GGG 0.578996 1.2:-46397100 None:intergenic
TCTGATAATCTCATAACAGA+AGG 0.581940 1.2:+46398460 MS.gene034914:CDS
GATAGATTTCGTGCCAAAAG+TGG 0.585745 1.2:+46398528 MS.gene034914:CDS
ATAGACTCTTTGAGTACCAT+CGG 0.589101 1.2:-46397516 None:intergenic
TCGGTTGTACAGGGTCTGAA+AGG 0.589621 1.2:+46397474 MS.gene034914:CDS
CTGCAACGAAACAAGTGGAC+TGG 0.590072 1.2:+46398483 MS.gene034914:CDS
GCAAGATGAACCGACTTGCA+TGG 0.594358 1.2:-46399845 None:intergenic
GCTGGTGATGCATTTGTCAG+TGG 0.595598 1.2:+46400552 MS.gene034914:CDS
TCTCTTTGTCACCGTGATTG+CGG 0.597480 1.2:-46400752 None:intergenic
GATGTTTGTGCGGCGCCTTG+TGG 0.597482 1.2:+46397569 MS.gene034914:CDS
TGATCATAACCTCATCAAGA+AGG 0.598780 1.2:+46399690 MS.gene034914:CDS
ATTGTTACCGAAGGGTTGGA+GGG 0.599566 1.2:+46400215 MS.gene034914:CDS
CAATCACGGTGACAAAGAGA+GGG 0.601122 1.2:+46400755 MS.gene034914:CDS
AGAGTCTTTAGCAATTCTCA+AGG 0.603061 1.2:-46399870 None:intergenic
GAAGGCTGCAACGAAACAAG+TGG 0.613114 1.2:+46398478 MS.gene034914:CDS
TCTAACGTAGACGTGAAACA+TGG 0.619436 1.2:+46397720 MS.gene034914:CDS
TGTCCTGCAATTTGATGCAA+AGG 0.620496 1.2:+46400807 MS.gene034914:CDS
GTTGGCATCTCTAAGTTGGG+GGG 0.621474 1.2:+46398625 MS.gene034914:CDS
AAACCTACCTGCAATATGAA+GGG 0.622315 1.2:-46397361 None:intergenic
AGGCGCCGCACAAACATCAA+GGG 0.628109 1.2:-46397564 None:intergenic
CTGCAGTTGTTAATGACCGA+TGG 0.628645 1.2:+46397500 MS.gene034914:CDS
AAGCTCCAAACTACTCTCGA+TGG 0.633411 1.2:+46397337 MS.gene034914:CDS
TGAAGCCCTTGATGTTTGTG+CGG 0.633895 1.2:+46397559 MS.gene034914:CDS
GCTCCTGCAAACGTGGCAGT+TGG 0.636197 1.2:+46398607 MS.gene034914:CDS
TGGTGATGCTCCTGCAAACG+TGG 0.639166 1.2:+46398600 MS.gene034914:CDS
GGGTTGTAGATATTACACTA+AGG 0.649949 1.2:+46400235 MS.gene034914:CDS
ACTGCCACAAGAATTGAGAT+CGG 0.650052 1.2:-46397287 None:intergenic
CAAAAGGTGATCAGAGACAT+CGG 0.651137 1.2:-46397143 None:intergenic
GATTGATGAGCCATGCAAGT+CGG 0.651378 1.2:+46399835 MS.gene034914:CDS
TCCAGAAGCATACCAGCACT+AGG 0.658678 1.2:-46399655 None:intergenic
CTGAGGCTGATCTACGAAGA+CGG 0.658748 1.2:-46397051 None:intergenic
GTTTGGTTTGAAGAGAGACA+AGG 0.658780 1.2:+46397174 MS.gene034914:CDS
TTATCAATATCGGTTGTACA+GGG 0.659758 1.2:+46397465 MS.gene034914:CDS
TTCGTGCCAAAAGTGGTGTG+TGG 0.676855 1.2:+46398535 MS.gene034914:CDS
AAAGAAACCTTTAATCCACA+AGG 0.695836 1.2:-46397584 None:intergenic
ATGTTGATAGATCTGGCATG+CGG 0.710596 1.2:+46399551 MS.gene034914:CDS
GTATCAATGATGTTGTGACT+GGG 0.712542 1.2:-46397801 None:intergenic
AATCACGGTGACAAAGAGAG+GGG 0.734564 1.2:+46400756 MS.gene034914:CDS
AGGCTGATCTACGAAGACGG+CGG 0.800769 1.2:-46397048 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATAATTAACAG+TGG - chr1.2:46398157-46398176 None:intergenic 10.0%
!!! ATTTAATTTAACAATAAGAA+AGG - chr1.2:46399323-46399342 None:intergenic 10.0%
!!! TTTAATTTAACAATAAGAAA+GGG - chr1.2:46399322-46399341 None:intergenic 10.0%
!! ACCAAAAAATTAAATCAAAT+AGG + chr1.2:46398123-46398142 MS.gene034914:intron 15.0%
!! TGTTAAGTTACAAAATAATT+TGG + chr1.2:46398096-46398115 MS.gene034914:intron 15.0%
!! TTAATTAGCATAACTTAATA+AGG + chr1.2:46398331-46398350 MS.gene034914:intron 15.0%
!!! ACCTATTTGATTTAATTTTT+TGG - chr1.2:46398127-46398146 None:intergenic 15.0%
!!! TATAATTTAATACTGATTGT+AGG + chr1.2:46399781-46399800 MS.gene034914:intron 15.0%
!! AAAATTTACCTTTATGACAT+CGG - chr1.2:46399990-46400009 None:intergenic 20.0%
!! AAATATGTATTCAGATGAAA+AGG - chr1.2:46397625-46397644 None:intergenic 20.0%
!! AATCTAACTCATTCAATATT+AGG - chr1.2:46398041-46398060 None:intergenic 20.0%
!! AATGTACAATAATAGAATCT+AGG + chr1.2:46398950-46398969 MS.gene034914:intron 20.0%
!! AGTAAATACATGATATTTCT+AGG - chr1.2:46399363-46399382 None:intergenic 20.0%
!! ATGTACAATAATAGAATCTA+GGG + chr1.2:46398951-46398970 MS.gene034914:intron 20.0%
!! CAAAGAAAATAATGAAATGA+GGG - chr1.2:46400317-46400336 None:intergenic 20.0%
!! CCTAAAAATATTACAGTATT+GGG + chr1.2:46397759-46397778 MS.gene034914:CDS 20.0%
!! CTAAAAATATTACAGTATTG+GGG + chr1.2:46397760-46397779 MS.gene034914:CDS 20.0%
!! TAAGAAATTTGTAATGTGTT+GGG + chr1.2:46398750-46398769 MS.gene034914:intron 20.0%
!! TAGGCTAAAATATTTCATTA+TGG + chr1.2:46399800-46399819 MS.gene034914:intron 20.0%
!! TATTTATTCACATGGTTATT+TGG + chr1.2:46398685-46398704 MS.gene034914:intron 20.0%
!! TCCTAAAAATATTACAGTAT+TGG + chr1.2:46397758-46397777 MS.gene034914:CDS 20.0%
!! TTAAGAAATTTGTAATGTGT+TGG + chr1.2:46398749-46398768 MS.gene034914:intron 20.0%
!!! TAAAAATATTACAGTATTGG+GGG + chr1.2:46397761-46397780 MS.gene034914:CDS 20.0%
!!! TTTTGAATTCAACTATAACA+TGG - chr1.2:46398232-46398251 None:intergenic 20.0%
! AAACAGAGATCGAAAATTAA+AGG - chr1.2:46399718-46399737 None:intergenic 25.0%
! AAATCTGAGTTAAATGACTT+TGG - chr1.2:46400269-46400288 None:intergenic 25.0%
! AAATGGTATAATGAGCATAT+GGG + chr1.2:46399958-46399977 MS.gene034914:CDS 25.0%
! AATACAAGATCATCATCATA+AGG - chr1.2:46400161-46400180 None:intergenic 25.0%
! AATATACAGACTTAAACCAT+AGG - chr1.2:46399761-46399780 None:intergenic 25.0%
! AGAAAAAAATTGTGAGTGTT+TGG + chr1.2:46400656-46400675 MS.gene034914:intron 25.0%
! AGATTTGAACAAATCAAACA+TGG - chr1.2:46398723-46398742 None:intergenic 25.0%
! GAATTACCTTGAAAATACTT+GGG - chr1.2:46400602-46400621 None:intergenic 25.0%
! GCAAAGAAAATAATGAAATG+AGG - chr1.2:46400318-46400337 None:intergenic 25.0%
! TAACAATAAGAAAGGGAAAA+GGG - chr1.2:46399315-46399334 None:intergenic 25.0%
! TACAAGTACTATATGAAGTT+TGG + chr1.2:46398252-46398271 MS.gene034914:intron 25.0%
! TCTATGTCTATTTATTCACA+TGG + chr1.2:46398677-46398696 MS.gene034914:intron 25.0%
! TGAATTACCTTGAAAATACT+TGG - chr1.2:46400603-46400622 None:intergenic 25.0%
! TGATTACTAAATTATTGTGC+AGG + chr1.2:46400476-46400495 MS.gene034914:intron 25.0%
! TGCAGAGAAGTAAAAAAAAA+AGG - chr1.2:46398388-46398407 None:intergenic 25.0%
! TGCTTAAGTAATCATAAATC+AGG - chr1.2:46399041-46399060 None:intergenic 25.0%
! TTAACAATAAGAAAGGGAAA+AGG - chr1.2:46399316-46399335 None:intergenic 25.0%
! TTGTATTTATAGCCTTCTAT+GGG + chr1.2:46399015-46399034 MS.gene034914:intron 25.0%
!! AAAAATATTACAGTATTGGG+GGG + chr1.2:46397762-46397781 MS.gene034914:CDS 25.0%
!! AACTTAATAAGGATGTTTTG+TGG + chr1.2:46398342-46398361 MS.gene034914:intron 25.0%
!! AATTATTGTGCAGGATTTTA+AGG + chr1.2:46400485-46400504 MS.gene034914:intron 25.0%
!! ATTATTGTGCAGGATTTTAA+GGG + chr1.2:46400486-46400505 MS.gene034914:intron 25.0%
!! ATTGATTACACTTTTCTGAA+TGG + chr1.2:46398782-46398801 MS.gene034914:intron 25.0%
!! CCCAATACTGTAATATTTTT+AGG - chr1.2:46397762-46397781 None:intergenic 25.0%
!! TAGCGAAATATAATGCATTT+TGG - chr1.2:46400723-46400742 None:intergenic 25.0%
!!! AGCTTTTGAAAATTAAGAGT+AGG - chr1.2:46397322-46397341 None:intergenic 25.0%
!!! CAGATTTTAATTGTCTGAAT+AGG + chr1.2:46400282-46400301 MS.gene034914:intron 25.0%
!!! GTTTTTTGCTATTTTTCTCT+TGG - chr1.2:46397023-46397042 None:intergenic 25.0%
AAAGAAACCTTTAATCCACA+AGG - chr1.2:46397587-46397606 None:intergenic 30.0%
AAGTGTAACAAAAGCCAATT+TGG - chr1.2:46399596-46399615 None:intergenic 30.0%
AATGAAACGTTGTCATGTTT+GGG + chr1.2:46398857-46398876 MS.gene034914:intron 30.0%
ACAATTAGAAGCTTGAGATT+AGG - chr1.2:46400200-46400219 None:intergenic 30.0%
ACTTAAACCATAGGTCTTTA+TGG - chr1.2:46399752-46399771 None:intergenic 30.0%
ACTTAAGCAGTAAGTAATGA+GGG + chr1.2:46399052-46399071 MS.gene034914:intron 30.0%
AGATGAATTTGGGTATATGT+TGG + chr1.2:46399507-46399526 MS.gene034914:CDS 30.0%
ATAGAAGAATCATTTCACAC+AGG - chr1.2:46398305-46398324 None:intergenic 30.0%
CAATTAGAAGCTTGAGATTA+GGG - chr1.2:46400199-46400218 None:intergenic 30.0%
CATATTATATCAGTCAGTCA+TGG + chr1.2:46397836-46397855 MS.gene034914:intron 30.0%
CGATCTCTGTTTATAAAATG+TGG + chr1.2:46399726-46399745 MS.gene034914:intron 30.0%
GAAATGGTATAATGAGCATA+TGG + chr1.2:46399957-46399976 MS.gene034914:CDS 30.0%
GGTTAAATTGAGAGATGTAT+TGG + chr1.2:46397679-46397698 MS.gene034914:intron 30.0%
GTGGACGAAATTATCAATAT+CGG + chr1.2:46397455-46397474 MS.gene034914:CDS 30.0%
GTTGTATTTATAGCCTTCTA+TGG + chr1.2:46399014-46399033 MS.gene034914:intron 30.0%
TACTTAAGCAGTAAGTAATG+AGG + chr1.2:46399051-46399070 MS.gene034914:intron 30.0%
TCTGATAATCTCATAACAGA+AGG + chr1.2:46398460-46398479 MS.gene034914:CDS 30.0%
TTAGGAATGTGAATCTATGT+TGG + chr1.2:46399431-46399450 MS.gene034914:intron 30.0%
TTCATCTGCATTTATAAGCA+AGG + chr1.2:46398648-46398667 MS.gene034914:CDS 30.0%
TTCATTCTATTCTTCCTTTG+CGG + chr1.2:46397398-46397417 MS.gene034914:intron 30.0%
! ATTATCAATATCGGTTGTAC+AGG + chr1.2:46397464-46397483 MS.gene034914:CDS 30.0%
! CAAAGTAATGTTGATAGATC+TGG + chr1.2:46399544-46399563 MS.gene034914:CDS 30.0%
! GCAGTAGTATTCTGAATTTT+AGG + chr1.2:46399413-46399432 MS.gene034914:intron 30.0%
! TTATCAATATCGGTTGTACA+GGG + chr1.2:46397465-46397484 MS.gene034914:CDS 30.0%
!! ACTTTTTCTTGTCCATGATT+GGG - chr1.2:46398004-46398023 None:intergenic 30.0%
!! AGTAAGTAATGAGGGTATTT+AGG + chr1.2:46399060-46399079 MS.gene034914:intron 30.0%
!!! GATGAGATTACTTTTTTGAC+TGG + chr1.2:46400125-46400144 MS.gene034914:CDS 30.0%
!!! TACTTTTTCTTGTCCATGAT+TGG - chr1.2:46398005-46398024 None:intergenic 30.0%
AAACCTACCTGCAATATGAA+GGG - chr1.2:46397364-46397383 None:intergenic 35.0%
AAGAAGTGATATCCCAATCA+TGG + chr1.2:46397989-46398008 MS.gene034914:CDS 35.0%
AAGCTTCTAATTGTTACCGA+AGG + chr1.2:46400206-46400225 MS.gene034914:CDS 35.0%
ACAACATCATTGATACTGTC+AGG + chr1.2:46397808-46397827 MS.gene034914:CDS 35.0%
AGAGTCTTTAGCAATTCTCA+AGG - chr1.2:46399873-46399892 None:intergenic 35.0%
AGCTTCTAATTGTTACCGAA+GGG + chr1.2:46400207-46400226 MS.gene034914:CDS 35.0%
AGTATCAATGATGTTGTGAC+TGG - chr1.2:46397805-46397824 None:intergenic 35.0%
ATAGACTCTTTGAGTACCAT+CGG - chr1.2:46397519-46397538 None:intergenic 35.0%
ATATCAGTCAGTCATGGTTA+CGG + chr1.2:46397842-46397861 MS.gene034914:intron 35.0%
ATTCCAAAGCTCACATTTCA+AGG - chr1.2:46398840-46398859 None:intergenic 35.0%
ATTTCTGAGTATCATCACTG+TGG - chr1.2:46397882-46397901 None:intergenic 35.0%
CAACTTGGAGATTCGTTAAA+TGG + chr1.2:46397214-46397233 MS.gene034914:CDS 35.0%
CAAGTTGTAAAACTTGAGCA+GGG + chr1.2:46400421-46400440 MS.gene034914:intron 35.0%
CATAGTGCCAATCTCAAATT+CGG - chr1.2:46399917-46399936 None:intergenic 35.0%
CATTTAACGAATCTCCAAGT+TGG - chr1.2:46397216-46397235 None:intergenic 35.0%
CATTTCACACTCAAATGCAT+TGG + chr1.2:46397429-46397448 MS.gene034914:intron 35.0%
CATTTGAGTGTGAAATGTTC+AGG - chr1.2:46397426-46397445 None:intergenic 35.0%
CTCTCAATTTAACCCTAACT+CGG - chr1.2:46397673-46397692 None:intergenic 35.0%
GAATGAAACGTTGTCATGTT+TGG + chr1.2:46398856-46398875 MS.gene034914:intron 35.0%
GGGTTGTAGATATTACACTA+AGG + chr1.2:46400235-46400254 MS.gene034914:CDS 35.0%
GTACATTTGCAAGTACAGAT+GGG - chr1.2:46398937-46398956 None:intergenic 35.0%
GTATCAATGATGTTGTGACT+GGG - chr1.2:46397804-46397823 None:intergenic 35.0%
TCAAAAAGTTCCCTCAGAAT+CGG + chr1.2:46397090-46397109 MS.gene034914:CDS 35.0%
TGATCATAACCTCATCAAGA+AGG + chr1.2:46399690-46399709 MS.gene034914:CDS 35.0%
TGGAAATGGGAAGTTATAGT+TGG - chr1.2:46399282-46399301 None:intergenic 35.0%
TGTACATTTGCAAGTACAGA+TGG - chr1.2:46398938-46398957 None:intergenic 35.0%
TTCTAATGCCAGAACCAAAT+TGG + chr1.2:46399579-46399598 MS.gene034914:CDS 35.0%
TTGAAGTGGTTTCTATTCGA+TGG - chr1.2:46399252-46399271 None:intergenic 35.0%
TTGCTCTTTATTCTGATGAG+TGG + chr1.2:46400334-46400353 MS.gene034914:intron 35.0%
! AACAAAAGCCAATTTGGTTC+TGG - chr1.2:46399590-46399609 None:intergenic 35.0%
! ACATCTTTTGTAGGTAATGC+AGG - chr1.2:46400787-46400806 None:intergenic 35.0%
! AGAGATGTATTGGTACTTGT+AGG + chr1.2:46397689-46397708 MS.gene034914:intron 35.0%
! CTAAAACACAGATGATGATG+AGG - chr1.2:46399479-46399498 None:intergenic 35.0%
! CTCATCATCATCTGTGTTTT+AGG + chr1.2:46399477-46399496 MS.gene034914:intron 35.0%
! GTATGATCCGAATTTGAGAT+TGG + chr1.2:46399907-46399926 MS.gene034914:CDS 35.0%
! TTCTGACCCAAGTATTTTCA+AGG + chr1.2:46400593-46400612 MS.gene034914:CDS 35.0%
! TTTTCCGATCTCAATTCTTG+TGG + chr1.2:46397283-46397302 MS.gene034914:CDS 35.0%
! TTTTTGTGCTAAATCGTCTC+TGG + chr1.2:46397931-46397950 MS.gene034914:intron 35.0%
!! GATTTTAAGGGCAAAGTTAG+AGG + chr1.2:46400498-46400517 MS.gene034914:CDS 35.0%
!! GTTGACGAAGTTATTTTGTG+TGG + chr1.2:46400680-46400699 MS.gene034914:intron 35.0%
!! TCATCATCTGTGTTTTAGGT+TGG + chr1.2:46399481-46399500 MS.gene034914:intron 35.0%
!!! ATTACTTTTTTGACTGGTGG+TGG + chr1.2:46400131-46400150 MS.gene034914:CDS 35.0%
!!! GAGATTACTTTTTTGACTGG+TGG + chr1.2:46400128-46400147 MS.gene034914:CDS 35.0%
!!! TCTGATCACCTTTTGAAACT+CGG + chr1.2:46397151-46397170 MS.gene034914:CDS 35.0%
AAAGGGAAAAGGGTAGAATG+AGG - chr1.2:46399305-46399324 None:intergenic 40.0%
AACCAAACCCGAGTTTCAAA+AGG - chr1.2:46397162-46397181 None:intergenic 40.0%
AAGTGGTTTCTATTCGATGG+TGG - chr1.2:46399249-46399268 None:intergenic 40.0%
AATGGCATGTGTGTGTTTCA+AGG + chr1.2:46398800-46398819 MS.gene034914:intron 40.0%
AATGTGGCCATAAAGACCTA+TGG + chr1.2:46399742-46399761 MS.gene034914:intron 40.0%
ACCTGCAAAACATGAACTGT+TGG - chr1.2:46398437-46398456 None:intergenic 40.0%
ACTCCTTGAAATGTGAGCTT+TGG + chr1.2:46398834-46398853 MS.gene034914:intron 40.0%
ACTGCCACAAGAATTGAGAT+CGG - chr1.2:46397290-46397309 None:intergenic 40.0%
AGACGTGAAACATGGAAGAT+TGG + chr1.2:46397728-46397747 MS.gene034914:CDS 40.0%
AGGTTGGAGCAGATGAATTT+GGG + chr1.2:46399497-46399516 MS.gene034914:intron 40.0%
AGTCCTCAGGAAGATATTGA+CGG + chr1.2:46399222-46399241 MS.gene034914:intron 40.0%
ATGGGAAGTTATAGTTGGTC+AGG - chr1.2:46399277-46399296 None:intergenic 40.0%
CAAAAGGTGATCAGAGACAT+CGG - chr1.2:46397146-46397165 None:intergenic 40.0%
CAAACATCAAGGGCTTCAAT+AGG - chr1.2:46397557-46397576 None:intergenic 40.0%
CTTCGATGTTTCCAAAAAGG+CGG + chr1.2:46397237-46397256 MS.gene034914:CDS 40.0%
GAAACCTACCTGCAATATGA+AGG - chr1.2:46397365-46397384 None:intergenic 40.0%
GATAGATTTCGTGCCAAAAG+TGG + chr1.2:46398528-46398547 MS.gene034914:CDS 40.0%
GATGGTACTCAAAGAGTCTA+TGG + chr1.2:46397518-46397537 MS.gene034914:CDS 40.0%
GCAAGTTGTAAAACTTGAGC+AGG + chr1.2:46400420-46400439 MS.gene034914:intron 40.0%
GTTTATGTGATCCCTTGAGA+AGG + chr1.2:46398982-46399001 MS.gene034914:intron 40.0%
TAATGTATGTGCCGCAATCA+CGG + chr1.2:46400741-46400760 MS.gene034914:CDS 40.0%
TCATAAATCAGGCCCATAGA+AGG - chr1.2:46399030-46399049 None:intergenic 40.0%
TCTAACGTAGACGTGAAACA+TGG + chr1.2:46397720-46397739 MS.gene034914:CDS 40.0%
TCTAATTGTTACCGAAGGGT+TGG + chr1.2:46400211-46400230 MS.gene034914:CDS 40.0%
TGGCTCATCAATCAAACTCA+TGG - chr1.2:46399828-46399847 None:intergenic 40.0%
TGGCTTCGATGTTTCCAAAA+AGG + chr1.2:46397234-46397253 MS.gene034914:CDS 40.0%
TGTCCTGCAATTTGATGCAA+AGG + chr1.2:46400807-46400826 MS.gene034914:CDS 40.0%
TTTCTTGAAAGCAGACGCTT+CGG - chr1.2:46398578-46398597 None:intergenic 40.0%
! AATATTACAGTATTGGGGGG+TGG + chr1.2:46397765-46397784 MS.gene034914:CDS 40.0%
! ACCAACAGTTCATGTTTTGC+AGG + chr1.2:46398433-46398452 MS.gene034914:intron 40.0%
! ATGTTGATAGATCTGGCATG+CGG + chr1.2:46399551-46399570 MS.gene034914:CDS 40.0%
! CGAATTTGAGATTGGCACTA+TGG + chr1.2:46399915-46399934 MS.gene034914:CDS 40.0%
! GAAACAGATTTCCGCCTTTT+TGG - chr1.2:46397251-46397270 None:intergenic 40.0%
! GGTAAAGTTCGTGCATTTTG+AGG + chr1.2:46398878-46398897 MS.gene034914:intron 40.0%
! TAGGTTGGAGCAGATGAATT+TGG + chr1.2:46399496-46399515 MS.gene034914:intron 40.0%
! TGCAGGACAACATCTTTTGT+AGG - chr1.2:46400796-46400815 None:intergenic 40.0%
! TTGCTATTCTCTCCGAGTTA+GGG + chr1.2:46397658-46397677 MS.gene034914:intron 40.0%
! TTTTTCCGAAATCCTAGTGC+TGG + chr1.2:46399643-46399662 MS.gene034914:CDS 40.0%
!! ACGAAGTTATTTTGTGTGGC+AGG + chr1.2:46400684-46400703 MS.gene034914:intron 40.0%
!! GATTCTGAGGGAACTTTTTG+AGG - chr1.2:46397091-46397110 None:intergenic 40.0%
!! GTTTGGTTTGAAGAGAGACA+AGG + chr1.2:46397174-46397193 MS.gene034914:CDS 40.0%
!! TGATGAGTGGACTGAAATGT+TGG + chr1.2:46400347-46400366 MS.gene034914:intron 40.0%
!! TTAAAGGCACCTTCTTGATG+AGG - chr1.2:46399702-46399721 None:intergenic 40.0%
!! TTTGCTATTCTCTCCGAGTT+AGG + chr1.2:46397657-46397676 MS.gene034914:intron 40.0%
!!! AGTGGACTGGTTGTTTGTTT+TGG + chr1.2:46398496-46398515 MS.gene034914:CDS 40.0%
!!! CTGATCACCTTTTGAAACTC+GGG + chr1.2:46397152-46397171 MS.gene034914:CDS 40.0%
!!! TAGTTGGTCAGGTTTTGAAG+TGG - chr1.2:46399266-46399285 None:intergenic 40.0%
!!! TTTTTGAGGCTGAACTACAG+CGG - chr1.2:46397077-46397096 None:intergenic 40.0%
AAGCTCCAAACTACTCTCGA+TGG + chr1.2:46397337-46397356 MS.gene034914:CDS 45.0%
AATCACGGTGACAAAGAGAG+GGG + chr1.2:46400756-46400775 MS.gene034914:CDS 45.0%
AATTGTTACCGAAGGGTTGG+AGG + chr1.2:46400214-46400233 MS.gene034914:CDS 45.0%
AGGGTAGAATGAGGTGGAAA+TGG - chr1.2:46399296-46399315 None:intergenic 45.0%
ATTGTTACCGAAGGGTTGGA+GGG + chr1.2:46400215-46400234 MS.gene034914:CDS 45.0%
CAATCACGGTGACAAAGAGA+GGG + chr1.2:46400755-46400774 MS.gene034914:CDS 45.0%
CAGATGAAAAGGATGTCTCG+TGG - chr1.2:46397614-46397633 None:intergenic 45.0%
CAGCCTTTGCATCAAATTGC+AGG - chr1.2:46400813-46400832 None:intergenic 45.0%
CAGTTGGCATCTCTAAGTTG+GGG + chr1.2:46398623-46398642 MS.gene034914:CDS 45.0%
CATCGGTCATTAACAACTGC+AGG - chr1.2:46397502-46397521 None:intergenic 45.0%
CTGCAGTTGTTAATGACCGA+TGG + chr1.2:46397500-46397519 MS.gene034914:CDS 45.0%
GATTGATGAGCCATGCAAGT+CGG + chr1.2:46399835-46399854 MS.gene034914:CDS 45.0%
GCAGTTGGCATCTCTAAGTT+GGG + chr1.2:46398622-46398641 MS.gene034914:CDS 45.0%
GCATACCAGCACTAGGATTT+CGG - chr1.2:46399651-46399670 None:intergenic 45.0%
GGATCTAGCCGATGTCATAA+AGG + chr1.2:46399979-46399998 MS.gene034914:CDS 45.0%
GGGTAGAATGAGGTGGAAAT+GGG - chr1.2:46399295-46399314 None:intergenic 45.0%
GTTGAACCTGTTGACACAAC+TGG + chr1.2:46400528-46400547 MS.gene034914:CDS 45.0%
TATACCATTTCGAGCAGCCT+TGG - chr1.2:46399948-46399967 None:intergenic 45.0%
TCTCTTTGTCACCGTGATTG+CGG - chr1.2:46400755-46400774 None:intergenic 45.0%
TGAAGCCCTTGATGTTTGTG+CGG + chr1.2:46397559-46397578 MS.gene034914:CDS 45.0%
TTACTTCTCTGCAGTGCTAC+AGG + chr1.2:46398395-46398414 MS.gene034914:intron 45.0%
! AGTTGGCATCTCTAAGTTGG+GGG + chr1.2:46398624-46398643 MS.gene034914:CDS 45.0%
! CTGGTGATGCATTTGTCAGT+GGG + chr1.2:46400553-46400572 MS.gene034914:CDS 45.0%
! GAAATGTTCAGGTTCCGCAA+AGG - chr1.2:46397415-46397434 None:intergenic 45.0%
! TCACACTCAAATGCATTGGC+AGG + chr1.2:46397433-46397452 MS.gene034914:intron 45.0%
! TCCAAGTTGGCGAAGACAAT+CGG - chr1.2:46397203-46397222 None:intergenic 45.0%
! TGTTGAGCTTGCTTGTTAGC+TGG + chr1.2:46398193-46398212 MS.gene034914:intron 45.0%
!! TTCTAGAAGCCTCTAGAGCT+CGG - chr1.2:46399094-46399113 None:intergenic 45.0%
!!! CACCTTTTGAAACTCGGGTT+TGG + chr1.2:46397157-46397176 MS.gene034914:CDS 45.0%
AACCCTTGAGAGCCTTCTCA+AGG - chr1.2:46398997-46399016 None:intergenic 50.0%
ACCCTTGAGAGCCTTCTCAA+GGG - chr1.2:46398996-46399015 None:intergenic 50.0%
ACTTAAGAAGCCCTCCCAAG+GGG - chr1.2:46399205-46399224 None:intergenic 50.0%
AGGGACCATCGAGAGTAGTT+TGG - chr1.2:46397345-46397364 None:intergenic 50.0%
ATCCCTTGAGAAGGCTCTCA+AGG + chr1.2:46398991-46399010 MS.gene034914:intron 50.0%
CGATGGTCCCTTCATATTGC+AGG + chr1.2:46397354-46397373 MS.gene034914:CDS 50.0%
CTGAGGCTGATCTACGAAGA+CGG - chr1.2:46397054-46397073 None:intergenic 50.0%
CTGCAACGAAACAAGTGGAC+TGG + chr1.2:46398483-46398502 MS.gene034914:CDS 50.0%
GAAGGCTGCAACGAAACAAG+TGG + chr1.2:46398478-46398497 MS.gene034914:CDS 50.0%
GACTTAAGAAGCCCTCCCAA+GGG - chr1.2:46399206-46399225 None:intergenic 50.0%
GCAATCACGGTGACAAAGAG+AGG + chr1.2:46400754-46400773 MS.gene034914:CDS 50.0%
GCGTCTGCTTTCAAGAAAGC+TGG + chr1.2:46398580-46398599 MS.gene034914:CDS 50.0%
GGACCGTCAATATCTTCCTG+AGG - chr1.2:46399228-46399247 None:intergenic 50.0%
GGCAGTTGGCATCTCTAAGT+TGG + chr1.2:46398621-46398640 MS.gene034914:CDS 50.0%
GGGAAAAGGGTAGAATGAGG+TGG - chr1.2:46399302-46399321 None:intergenic 50.0%
GGTCCCTTCATATTGCAGGT+AGG + chr1.2:46397358-46397377 MS.gene034914:intron 50.0%
TCCCTTGAGAAGGCTCTCAA+GGG + chr1.2:46398992-46399011 MS.gene034914:intron 50.0%
TCGACTGCTTCCGATTCTGA+GGG - chr1.2:46397103-46397122 None:intergenic 50.0%
TCGGTTGTACAGGGTCTGAA+AGG + chr1.2:46397474-46397493 MS.gene034914:CDS 50.0%
TCGTCTCTGGCTATGCTTGA+AGG + chr1.2:46397944-46397963 MS.gene034914:intron 50.0%
TCTACAACCCTCCAACCCTT+CGG - chr1.2:46400225-46400244 None:intergenic 50.0%
TTCGACTGCTTCCGATTCTG+AGG - chr1.2:46397104-46397123 None:intergenic 50.0%
TTCGTGCCAAAAGTGGTGTG+TGG + chr1.2:46398535-46398554 MS.gene034914:CDS 50.0%
! CACTCAAATGCATTGGCAGG+TGG + chr1.2:46397436-46397455 MS.gene034914:intron 50.0%
! CGAAGTCCACACACCACTTT+TGG - chr1.2:46398544-46398563 None:intergenic 50.0%
! CTCTAGAGGCTTCTAGAAGC+TGG + chr1.2:46399096-46399115 MS.gene034914:intron 50.0%
! CTTGAGCAGGGTTTGCTTCA+AGG + chr1.2:46400433-46400452 MS.gene034914:intron 50.0%
! GAGCTTGCTTGTTAGCTGGT+TGG + chr1.2:46398197-46398216 MS.gene034914:intron 50.0%
! GCTGGTGATGCATTTGTCAG+TGG + chr1.2:46400552-46400571 MS.gene034914:CDS 50.0%
! GTCATTATGCCGAGCTCTAG+AGG + chr1.2:46399082-46399101 MS.gene034914:intron 50.0%
! GTTGGCATCTCTAAGTTGGG+GGG + chr1.2:46398625-46398644 MS.gene034914:CDS 50.0%
! TCCAGAAGCATACCAGCACT+AGG - chr1.2:46399658-46399677 None:intergenic 50.0%
!! GCAAGATGAACCGACTTGCA+TGG - chr1.2:46399848-46399867 None:intergenic 50.0%
!! TCCTAGTGCTGGTATGCTTC+TGG + chr1.2:46399654-46399673 MS.gene034914:CDS 50.0%
AAAGCAGACGCTTCGGCTAG+AGG - chr1.2:46398571-46398590 None:intergenic 55.0%
AGGCTGATCTACGAAGACGG+CGG - chr1.2:46397051-46397070 None:intergenic 55.0%
ATGCCAACTGCCACGTTTGC+AGG - chr1.2:46398613-46398632 None:intergenic 55.0%
CCAGCACCAGTTGTGTCAAC+AGG - chr1.2:46400537-46400556 None:intergenic 55.0%
CCTGTTGACACAACTGGTGC+TGG + chr1.2:46400534-46400553 MS.gene034914:CDS 55.0%
GCCGATTGTCTTCGCCAACT+TGG + chr1.2:46397199-46397218 MS.gene034914:CDS 55.0%
GGACTTAAGAAGCCCTCCCA+AGG - chr1.2:46399207-46399226 None:intergenic 55.0%
GGAGGGCTTCTTAAGTCCTC+AGG + chr1.2:46399209-46399228 MS.gene034914:intron 55.0%
TCAGCCAAGGCTGCTCGAAA+TGG + chr1.2:46399941-46399960 MS.gene034914:CDS 55.0%
TTTCGAGCAGCCTTGGCTGA+TGG - chr1.2:46399941-46399960 None:intergenic 55.0%
! AGGCGCCGCACAAACATCAA+GGG - chr1.2:46397567-46397586 None:intergenic 55.0%
! AGGCTTCTAGAAGCTGGCTG+AGG + chr1.2:46399102-46399121 MS.gene034914:intron 55.0%
! CTTCTAGAAGCTGGCTGAGG+CGG + chr1.2:46399105-46399124 MS.gene034914:intron 55.0%
! TGCGGCGCCTTGTGGATTAA+AGG + chr1.2:46397577-46397596 MS.gene034914:CDS 55.0%
! TGGTGATGCTCCTGCAAACG+TGG + chr1.2:46398600-46398619 MS.gene034914:CDS 55.0%
!! AAGGCGCCGCACAAACATCA+AGG - chr1.2:46397568-46397587 None:intergenic 55.0%
AAGCCCTCCCAAGGGGTCTA+AGG - chr1.2:46399198-46399217 None:intergenic 60.0%
AGGAGGGTCCTTAGACCCCT+TGG + chr1.2:46399187-46399206 MS.gene034914:intron 60.0%
AGGCTGAACTACAGCGGCTG+AGG - chr1.2:46397071-46397090 None:intergenic 60.0%
GATGTTTGTGCGGCGCCTTG+TGG + chr1.2:46397569-46397588 MS.gene034914:CDS 60.0%
GCTCCTGCAAACGTGGCAGT+TGG + chr1.2:46398607-46398626 MS.gene034914:CDS 60.0%
GGAGGGTCCTTAGACCCCTT+GGG + chr1.2:46399188-46399207 MS.gene034914:intron 60.0%
GGCACTATGGCCATCAGCCA+AGG + chr1.2:46399928-46399947 MS.gene034914:CDS 60.0%
GGGTCTAAGGACCCTCCTAG+AGG - chr1.2:46399185-46399204 None:intergenic 60.0%
GGTCCTTAGACCCCTTGGGA+GGG + chr1.2:46399192-46399211 MS.gene034914:intron 60.0%
AGGCCTCAGCGCCCTCCTAA+AGG - chr1.2:46399165-46399184 None:intergenic 65.0%
CGCCCTCCTAAAGGGCTCCA+GGG - chr1.2:46399156-46399175 None:intergenic 65.0%
CTAAAGGGCTCCAGGGCCCA+AGG - chr1.2:46399149-46399168 None:intergenic 65.0%
CTTGGGCCCTGGAGCCCTTT+AGG + chr1.2:46399147-46399166 MS.gene034914:intron 65.0%
GGCCTCAGCGCCCTCCTAAA+GGG - chr1.2:46399164-46399183 None:intergenic 65.0%
GGGTCCTTAGACCCCTTGGG+AGG + chr1.2:46399191-46399210 MS.gene034914:intron 65.0%
! GGCCCTGGAGCCCTTTAGGA+GGG + chr1.2:46399151-46399170 MS.gene034914:intron 65.0%
!! AGCCCTTTAGGAGGGCGCTG+AGG + chr1.2:46399159-46399178 MS.gene034914:intron 65.0%
GCGCCCTCCTAAAGGGCTCC+AGG - chr1.2:46399157-46399176 None:intergenic 70.0%
GGGCCCTGGAGCCCTTTAGG+AGG + chr1.2:46399150-46399169 MS.gene034914:intron 70.0%
!! AGGAGGGCGCTGAGGCCTCT+AGG + chr1.2:46399167-46399186 MS.gene034914:intron 70.0%
!! AGGGCGCTGAGGCCTCTAGG+AGG + chr1.2:46399170-46399189 MS.gene034914:intron 70.0%
!! GGGCGCTGAGGCCTCTAGGA+GGG + chr1.2:46399171-46399190 MS.gene034914:intron 70.0%
CCCAAGGCGCGCCCTCCACA+GGG - chr1.2:46399133-46399152 None:intergenic 75.0%
CTGAGGCGGCGCCCTGTGGA+GGG + chr1.2:46399119-46399138 MS.gene034914:intron 75.0%
! CCCTGTGGAGGGCGCGCCTT+GGG + chr1.2:46399130-46399149 MS.gene034914:intron 75.0%
! CTGGCTGAGGCGGCGCCCTG+TGG + chr1.2:46399115-46399134 MS.gene034914:intron 80.0%
! GCCCAAGGCGCGCCCTCCAC+AGG - chr1.2:46399134-46399153 None:intergenic 80.0%
! GCTGAGGCGGCGCCCTGTGG+AGG + chr1.2:46399118-46399137 MS.gene034914:intron 80.0%
!! GCCCTGTGGAGGGCGCGCCT+TGG + chr1.2:46399129-46399148 MS.gene034914:intron 80.0%
!! GGAGGGCGCGCCTTGGGCCC+TGG + chr1.2:46399136-46399155 MS.gene034914:intron 85.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 46396998 46400840 46396998 ID=MS.gene034914
chr1.2 mRNA 46396998 46400840 46396998 ID=MS.gene034914.t1;Parent=MS.gene034914
chr1.2 exon 46396998 46397375 46396998 ID=MS.gene034914.t1.exon1;Parent=MS.gene034914.t1
chr1.2 CDS 46396998 46397375 46396998 ID=cds.MS.gene034914.t1;Parent=MS.gene034914.t1
chr1.2 exon 46397455 46397598 46397455 ID=MS.gene034914.t1.exon2;Parent=MS.gene034914.t1
chr1.2 CDS 46397455 46397598 46397455 ID=cds.MS.gene034914.t1;Parent=MS.gene034914.t1
chr1.2 exon 46397711 46397829 46397711 ID=MS.gene034914.t1.exon3;Parent=MS.gene034914.t1
chr1.2 CDS 46397711 46397829 46397711 ID=cds.MS.gene034914.t1;Parent=MS.gene034914.t1
chr1.2 exon 46397966 46398021 46397966 ID=MS.gene034914.t1.exon4;Parent=MS.gene034914.t1
chr1.2 CDS 46397966 46398021 46397966 ID=cds.MS.gene034914.t1;Parent=MS.gene034914.t1
chr1.2 exon 46398455 46398669 46398455 ID=MS.gene034914.t1.exon5;Parent=MS.gene034914.t1
chr1.2 CDS 46398455 46398669 46398455 ID=cds.MS.gene034914.t1;Parent=MS.gene034914.t1
chr1.2 exon 46399499 46399711 46399499 ID=MS.gene034914.t1.exon6;Parent=MS.gene034914.t1
chr1.2 CDS 46399499 46399711 46399499 ID=cds.MS.gene034914.t1;Parent=MS.gene034914.t1
chr1.2 exon 46399803 46400000 46399803 ID=MS.gene034914.t1.exon7;Parent=MS.gene034914.t1
chr1.2 CDS 46399803 46400000 46399803 ID=cds.MS.gene034914.t1;Parent=MS.gene034914.t1
chr1.2 exon 46400116 46400256 46400116 ID=MS.gene034914.t1.exon8;Parent=MS.gene034914.t1
chr1.2 CDS 46400116 46400256 46400116 ID=cds.MS.gene034914.t1;Parent=MS.gene034914.t1
chr1.2 exon 46400498 46400614 46400498 ID=MS.gene034914.t1.exon9;Parent=MS.gene034914.t1
chr1.2 CDS 46400498 46400614 46400498 ID=cds.MS.gene034914.t1;Parent=MS.gene034914.t1
chr1.2 exon 46400706 46400840 46400706 ID=MS.gene034914.t1.exon10;Parent=MS.gene034914.t1
chr1.2 CDS 46400706 46400840 46400706 ID=cds.MS.gene034914.t1;Parent=MS.gene034914.t1
Gene Sequence

>MS.gene034914

ATGAGAGGGAAAAGATGCAAAACCAAGAGAAAAATAGCAAAAAACATTCGCCGCCGTCTTCGTAGATCAGCCTCAGCCGCTGTAGTTCAGCCTCAAAAAGTTCCCTCAGAATCGGAAGCAGTCGAAATCTTTGACGATGACTTGACCGATGTCTCTGATCACCTTTTGAAACTCGGGTTTGGTTTGAAGAGAGACAAGGTTGCCGATTGTCTTCGCCAACTTGGAGATTCGTTAAATGGCTTCGATGTTTCCAAAAAGGCGGAAATCTGTTTCAAGAAGTTTCTGTTTTCCGATCTCAATTCTTGTGGCAGTGCTATACTTCCTACTCTTAATTTTCAAAAGCTCCAAACTACTCTCGATGGTCCCTTCATATTGCAGGTAGGTTTCATTCAGTAGTTAATTCATTCTATTCTTCCTTTGCGGAACCTGAACATTTCACACTCAAATGCATTGGCAGGTGGACGAAATTATCAATATCGGTTGTACAGGGTCTGAAAGGCACCTGCAGTTGTTAATGACCGATGGTACTCAAAGAGTCTATGGATTTTTAATCGTGCCTATTGAAGCCCTTGATGTTTGTGCGGCGCCTTGTGGATTAAAGGTTTCTTTGATGCCACGAGACATCCTTTTCATCTGAATACATATTTATAATGCTTTTATTTGCTATTCTCTCCGAGTTAGGGTTAAATTGAGAGATGTATTGGTACTTGTAGGTCAAAATCTCTAACGTAGACGTGAAACATGGAAGATTGGCGCTGTTTCCTAAAAATATTACAGTATTGGGGGGTGGATTAGTTGATGATCCCAGTCACAACATCATTGATACTGTCAGGTACTACATATTATATCAGTCAGTCATGGTTACGGCATTTAAAATTCTGCCACAGTGATGATACTCAGAAATATATGTGAATGTGATTGATAAATGTCTATTTTTTGTGCTAAATCGTCTCTGGCTATGCTTGAAGGTATTTGTTGAGAAAGCTGAGAGAAGAAGTGATATCCCAATCATGGACAAGAAAAAGTAAGATTTTGTCTGTCCTAATATTGAATGAGTTAGATTGAAATTTTTTATCATATTTTCTTAACATTAATTCATGTTAAGTTACAAAATAATTTGGACATACCAAAAAATTAAATCAAATAGGTTGAAGCACCACTGTTAATTATTATTATTATGAAAAAGATGACTTTGTGTTGAGCTTGCTTGTTAGCTGGTTGGTAATGCTTTCCATGTTATAGTTGAATTCAAAATACAAGTACTATATGAAGTTTGGCTATTAGCTATTTAGTATGTCATGTTACCTGTGTGAAATGATTCTTCTATTTAATATTAATTAGCATAACTTAATAAGGATGTTTTGTGGTATTTCGCATTTAAATATATCCTTTTTTTTTTACTTCTCTGCAGTGCTACAGGTAAAAAAAAAATTGAACCAACAGTTCATGTTTTGCAGGTAATTCTGATAATCTCATAACAGAAGGCTGCAACGAAACAAGTGGACTGGTTGTTTGTTTTGGTGAAATGTTGATAGATTTCGTGCCAAAAGTGGTGTGTGGACTTCGAGTGCCTCTAGCCGAAGCGTCTGCTTTCAAGAAAGCTGGTGATGCTCCTGCAAACGTGGCAGTTGGCATCTCTAAGTTGGGGGGTTCATCTGCATTTATAAGCAAGGTGTACATCTATGTCTATTTATTCACATGGTTATTTGGTTTCTTTGACTTCCATGTTTGATTTGTTCAAATCTTCATATTTAAGAAATTTGTAATGTGTTGGGTTATTTGAAATTGATTACACTTTTCTGAATGGCATGTGTGTGTTTCAAGGTATACAAATAAACTCCTTGAAATGTGAGCTTTGGAATGAAACGTTGTCATGTTTGGGTAAAGTTCGTGCATTTTGAGGAATAACTTCTACTCGTATTTTCTATTTTTCATTCCCATCTGTACTTGCAAATGTACAATAATAGAATCTAGGGTTTAGACTGTTTATGTGATCCCTTGAGAAGGCTCTCAAGGGTTGTATTTATAGCCTTCTATGGGCCTGATTTATGATTACTTAAGCAGTAAGTAATGAGGGTATTTAGGTCATTATGCCGAGCTCTAGAGGCTTCTAGAAGCTGGCTGAGGCGGCGCCCTGTGGAGGGCGCGCCTTGGGCCCTGGAGCCCTTTAGGAGGGCGCTGAGGCCTCTAGGAGGGTCCTTAGACCCCTTGGGAGGGCTTCTTAAGTCCTCAGGAAGATATTGACGGTCCACCATCGAATAGAAACCACTTCAAAACCTGACCAACTATAACTTCCCATTTCCACCTCATTCTACCCTTTTCCCTTTCTTATTGTTAAATTAAATAAAATTTAAAAAATATTCCTAGAAATATCATGTATTTACTTGTAGATTATTCATAAGAATAATACTTCTTGCAGTAGTATTCTGAATTTTAGGAATGTGAATCTATGTTGGCTGAGAAGATGATAGCTTAACTCCTCATCATCATCTGTGTTTTAGGTTGGAGCAGATGAATTTGGGTATATGTTGGAAGATATTTTAAAGCAAAGTAATGTTGATAGATCTGGCATGCGGTTTAATTCTAATGCCAGAACCAAATTGGCTTTTGTTACACTTAGAAATGATGACGAGCACGAGTTTTTATTTTTCCGAAATCCTAGTGCTGGTATGCTTCTGGATAAGTCAGAGCTTGATCATAACCTCATCAAGAAGGTGCCTTTAATTTTCGATCTCTGTTTATAAAATGTGGCCATAAAGACCTATGGTTTAAGTCTGTATATTTATAATTTAATACTGATTGTAGGCTAAAATATTTCATTATGGTTCCATGAGTTTGATTGATGAGCCATGCAAGTCGGTTCATCTTGCTGCCTTGAGAATTGCTAAAGACTCTGATTGCATTCTCTCGTATGATCCGAATTTGAGATTGGCACTATGGCCATCAGCCAAGGCTGCTCGAAATGGTATAATGAGCATATGGGATCTAGCCGATGTCATAAAGGTAAATTTTATTTATCTAGTTTTTTACTTTTATACAATACACTTCATAAAATTGCACTTCATTCTTTTTTCTTTCTCTAAGTCTATCTGAAGTGTTATTTTCTTATGTATTGCAGATCAGTGAAGATGAGATTACTTTTTTGACTGGTGGTGGTAATCCTTATGATGATGATCTTGTATTAAACAAGCTTTTTCACCCTAATCTCAAGCTTCTAATTGTTACCGAAGGGTTGGAGGGTTGTAGATATTACACTAAGGTAAGCTTGCCAAAGTCATTTAACTCAGATTTTAATTGTCTGAATAGGTTTTATAATCCCTCATTTCATTATTTTCTTTGCTCTTTATTCTGATGAGTGGACTGAAATGTTGGTTGTGACTTGTCGAATCTATATTAACGAATTCGACACTCAATGACAAATAGCAAGTTGTAAAACTTGAGCAGGGTTTGCTTCAAGGTTGAAGCATTCAACTAATAGTGATTACTAAATTATTGTGCAGGATTTTAAGGGCAAAGTTAGAGGTGTCAATGTTGAACCTGTTGACACAACTGGTGCTGGTGATGCATTTGTCAGTGGGATTCTCTACAACATAGCTTCTGACCCAAGTATTTTCAAGGTAATTCAGATATTTTTAAACATTCTTTTGTTGAATTAGAAAGAAAAAAATTGTGAGTGTTTGGAGTTGACGAAGTTATTTTGTGTGGCAGGATGAGAAACGTCTCCAAAATGCATTATATTTCGCTAATGTATGTGCCGCAATCACGGTGACAAAGAGAGGGGCAATTCCTGCATTACCTACAAAAGATGTTGTCCTGCAATTTGATGCAAAGGCTGCAATATGA
Protein sequence

>MS.gene034914.t1

MRGKRCKTKRKIAKNIRRRLRRSASAAVVQPQKVPSESEAVEIFDDDLTDVSDHLLKLGFGLKRDKVADCLRQLGDSLNGFDVSKKAEICFKKFLFSDLNSCGSAILPTLNFQKLQTTLDGPFILQVDEIINIGCTGSERHLQLLMTDGTQRVYGFLIVPIEALDVCAAPCGLKVKISNVDVKHGRLALFPKNITVLGGGLVDDPSHNIIDTVRYLLRKLREEVISQSWTRKSNSDNLITEGCNETSGLVVCFGEMLIDFVPKVVCGLRVPLAEASAFKKAGDAPANVAVGISKLGGSSAFISKVGADEFGYMLEDILKQSNVDRSGMRFNSNARTKLAFVTLRNDDEHEFLFFRNPSAGMLLDKSELDHNLIKKAKIFHYGSMSLIDEPCKSVHLAALRIAKDSDCILSYDPNLRLALWPSAKAARNGIMSIWDLADVIKISEDEITFLTGGGNPYDDDLVLNKLFHPNLKLLIVTEGLEGCRYYTKDFKGKVRGVNVEPVDTTGAGDAFVSGILYNIASDPSIFKDEKRLQNALYFANVCAAITVTKRGAIPALPTKDVVLQFDAKAAI