AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036000.t1 MTR_5g459450 98.116 743 13 1 1 743 1 742 0.0 1511
MS.gene036000.t1 MTR_3g073100 75.172 725 144 8 32 732 19 731 0.0 1097
MS.gene036000.t1 MTR_3g097260 66.962 678 192 7 64 732 50 704 0.0 884
MS.gene036000.t1 MTR_8g095170 61.980 697 208 8 51 732 12 666 0.0 865
MS.gene036000.t1 MTR_8g095170 63.589 574 181 5 51 611 12 570 0.0 754
MS.gene036000.t1 MTR_8g039100 50.533 750 304 12 37 732 14 750 0.0 677
MS.gene036000.t1 MTR_1g050740 49.799 747 275 14 64 732 56 780 0.0 661
MS.gene036000.t1 MTR_1g062740 42.481 798 307 16 60 729 42 815 0.0 585
MS.gene036000.t1 MTR_8g088930 40.131 765 342 17 65 727 9 759 2.34e-180 535
MS.gene036000.t1 MTR_8g088930 40.078 766 342 17 65 727 9 760 2.81e-180 535
MS.gene036000.t1 MTR_3g014650 63.070 417 136 7 320 732 371 773 2.61e-167 502
MS.gene036000.t1 MTR_3g014650 52.663 169 68 1 64 232 84 240 2.53e-52 195
MS.gene036000.t1 MTR_3g014650 32.258 124 84 0 70 193 147 270 3.94e-15 80.1
MS.gene036000.t1 MTR_3g014650 44.318 88 49 0 69 156 169 256 7.45e-14 75.9
MS.gene036000.t1 MTR_7g089950 58.118 425 155 7 311 732 387 791 6.14e-162 489
MS.gene036000.t1 MTR_7g089950 60.714 168 66 0 65 232 67 234 1.01e-65 234
MS.gene036000.t1 MTR_7g089950 45.570 79 43 0 70 148 164 242 4.00e-12 70.5
MS.gene036000.t1 MTR_7g089950 35.354 99 64 0 70 168 141 239 1.22e-11 68.9
MS.gene036000.t1 MTR_8g088930 43.248 585 263 10 65 582 9 591 4.16e-156 470
MS.gene036000.t1 MTR_8g088930 43.248 585 263 10 65 582 9 591 4.73e-156 470
MS.gene036000.t1 MTR_3g005910 84.722 72 11 0 444 515 1 72 1.10e-34 126
MS.gene036000.t1 MTR_8g080860 39.205 176 107 0 57 232 8 183 3.69e-34 132
MS.gene036000.t1 MTR_8g080860 33.750 160 106 0 68 227 111 270 3.26e-23 100
MS.gene036000.t1 MTR_8g080860 37.681 138 86 0 68 205 134 271 1.51e-21 96.3
MS.gene036000.t1 MTR_8g080860 39.205 176 107 0 57 232 4 179 4.83e-34 132
MS.gene036000.t1 MTR_8g080860 33.750 160 106 0 68 227 107 266 4.53e-23 100
MS.gene036000.t1 MTR_8g080860 37.681 138 86 0 68 205 130 267 2.06e-21 95.5
MS.gene036000.t1 MTR_4g107460 37.288 177 108 1 56 232 46 219 2.75e-31 125
MS.gene036000.t1 MTR_4g107460 27.200 250 150 5 94 318 11 253 8.55e-18 85.9
MS.gene036000.t1 MTR_8g080340 39.216 153 92 1 53 205 4 155 6.88e-30 116
MS.gene036000.t1 MTR_8g092090 35.088 171 109 1 62 232 35 203 6.59e-26 107
MS.gene036000.t1 MTR_8g092090 31.847 157 105 1 59 215 78 232 2.63e-17 82.8
MS.gene036000.t1 MTR_8g092090 32.026 153 96 1 88 232 5 157 2.06e-15 77.0
MS.gene036000.t1 MTR_5g058920 38.650 163 100 0 70 232 198 360 1.13e-25 111
MS.gene036000.t1 MTR_5g058920 38.889 126 77 0 71 196 245 370 1.69e-18 89.4
MS.gene036000.t1 MTR_7g451440 35.928 167 107 0 66 232 189 355 2.49e-25 110
MS.gene036000.t1 MTR_7g451440 40.625 128 76 0 71 198 240 367 4.31e-22 100
MS.gene036000.t1 MTR_7g451440 36.792 106 67 0 71 176 263 368 1.99e-14 77.0
MS.gene036000.t1 MTR_3g072650 33.684 190 124 1 45 232 159 348 5.57e-25 108
MS.gene036000.t1 MTR_3g072650 33.684 190 124 1 45 232 159 348 6.44e-25 108
MS.gene036000.t1 MTR_5g010840 39.456 147 81 1 68 214 111 249 7.96e-25 107
MS.gene036000.t1 MTR_5g010840 33.333 171 99 1 70 225 182 352 5.21e-22 99.4
MS.gene036000.t1 MTR_5g010840 40.404 99 59 0 70 168 266 364 2.67e-16 82.0
MS.gene036000.t1 MTR_6g043150 31.696 224 122 3 69 268 79 295 2.63e-24 105
MS.gene036000.t1 MTR_6g043150 34.973 183 96 1 66 225 7 189 2.76e-24 105
MS.gene036000.t1 MTR_6g043150 30.986 213 119 2 40 224 114 326 9.78e-20 91.7
MS.gene036000.t1 MTR_6g043150 31.325 166 114 0 67 232 54 219 1.31e-16 82.4
MS.gene036000.t1 MTR_4g099180 35.928 167 107 0 66 232 169 335 5.90e-24 105
MS.gene036000.t1 MTR_4g099180 36.719 128 81 0 71 198 220 347 3.00e-18 88.6
MS.gene036000.t1 MTR_4g099180 33.019 106 71 0 71 176 243 348 2.37e-11 67.0
MS.gene036000.t1 MTR_2g078470 32.719 217 114 3 41 227 46 260 6.18e-24 105
MS.gene036000.t1 MTR_2g078470 40.559 143 85 0 67 209 215 357 1.45e-23 103
MS.gene036000.t1 MTR_2g078470 30.932 236 114 2 61 250 2 234 4.18e-21 96.7
MS.gene036000.t1 MTR_2g078470 32.716 162 109 0 65 226 190 351 2.47e-19 91.3
MS.gene036000.t1 MTR_2g078470 31.319 182 102 1 69 227 148 329 7.36e-18 86.7
MS.gene036000.t1 MTR_2g078470 45.333 75 41 0 69 143 286 360 4.65e-13 72.0
MS.gene036000.t1 MTR_8g007500 34.444 180 115 1 56 232 181 360 2.92e-23 104
MS.gene036000.t1 MTR_8g007500 39.844 128 77 0 71 198 245 372 9.42e-21 96.7
MS.gene036000.t1 MTR_8g007500 35.849 106 68 0 71 176 268 373 1.55e-14 77.4
MS.gene036000.t1 MTR_8g095240 34.896 192 92 4 74 232 9 200 2.56e-20 94.7
MS.gene036000.t1 MTR_8g095240 30.500 200 105 2 67 232 48 247 7.87e-18 87.4
MS.gene036000.t1 MTR_8g095240 29.545 176 113 2 68 232 118 293 2.12e-16 82.8
MS.gene036000.t1 MTR_8g095240 36.986 146 91 1 90 234 2 147 4.46e-16 81.6
MS.gene036000.t1 MTR_8g095240 31.293 147 100 1 71 216 177 323 1.61e-13 73.9
MS.gene036000.t1 MTR_8g095240 30.137 146 100 1 38 183 193 336 4.58e-11 66.2
MS.gene036000.t1 MTR_8g080310 35.915 142 91 0 91 232 9 150 2.85e-20 88.6
MS.gene036000.t1 MTR_8g080310 33.333 126 84 0 107 232 2 127 2.67e-16 77.4
MS.gene036000.t1 MTR_8g080350 35.616 146 79 2 66 196 192 337 2.66e-17 85.1
MS.gene036000.t1 MTR_8g080350 29.897 194 98 2 68 223 125 318 1.82e-16 82.8
MS.gene036000.t1 MTR_8g080350 29.710 138 97 0 69 206 103 240 2.70e-14 75.9
MS.gene036000.t1 MTR_3g005900 72.000 50 10 1 571 620 1 46 7.37e-16 72.8
MS.gene036000.t1 MTR_4g099180 34.426 122 80 0 81 202 161 282 9.08e-16 79.3
MS.gene036000.t1 MTR_4g099180 36.134 119 76 0 66 184 169 287 4.13e-15 77.4
MS.gene036000.t1 MTR_4g099180 34.426 122 80 0 81 202 161 282 2.96e-15 78.2
MS.gene036000.t1 MTR_4g099180 37.069 116 73 0 66 181 169 284 1.11e-14 76.3
MS.gene036000.t1 MTR_1g112280 29.381 194 105 4 28 220 579 741 1.78e-14 77.8
MS.gene036000.t1 MTR_3g023310 33.600 125 70 2 84 208 11 122 4.76e-14 71.6
MS.gene036000.t1 MTR_8g092410 35.088 114 69 3 123 232 141 253 5.37e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036000.t1 AT1G21980 74.722 720 148 8 31 732 48 751 0.0 1082
MS.gene036000.t1 AT1G77740 74.895 713 148 7 39 732 53 753 0.0 1074
MS.gene036000.t1 AT1G77740 74.895 713 148 7 39 732 53 753 0.0 1074
MS.gene036000.t1 AT2G26420 60.000 715 233 12 47 732 28 718 0.0 838
MS.gene036000.t1 AT2G26420 60.000 715 233 12 47 732 28 718 0.0 838
MS.gene036000.t1 AT2G26420 59.524 714 224 11 47 732 28 704 0.0 831
MS.gene036000.t1 AT3G07960 54.282 724 245 15 64 732 22 714 0.0 741
MS.gene036000.t1 AT2G41210 52.486 724 272 13 64 732 65 771 0.0 730
MS.gene036000.t1 AT3G56960 52.545 727 272 14 64 732 67 778 0.0 728
MS.gene036000.t1 AT3G56960 52.545 727 272 14 64 732 67 778 0.0 728
MS.gene036000.t1 AT3G07960 55.401 574 189 10 64 583 22 582 0.0 622
MS.gene036000.t1 AT3G07960 55.401 574 189 10 64 583 22 582 0.0 620
MS.gene036000.t1 AT3G07960 32.432 148 95 1 39 181 61 208 1.51e-16 84.3
MS.gene036000.t1 AT3G07960 55.401 574 189 10 64 583 22 582 0.0 620
MS.gene036000.t1 AT3G07960 32.432 148 95 1 39 181 61 208 1.51e-16 84.3
MS.gene036000.t1 AT3G09920 41.379 783 329 16 63 732 47 812 0.0 575
MS.gene036000.t1 AT3G09920 41.379 783 329 16 63 732 47 812 0.0 575
MS.gene036000.t1 AT3G09920 41.379 783 329 16 63 732 47 812 0.0 575
MS.gene036000.t1 AT3G09920 41.379 783 329 16 63 732 47 812 0.0 575
MS.gene036000.t1 AT1G10900 41.821 758 340 16 65 732 7 753 0.0 543
MS.gene036000.t1 AT1G10900 41.821 758 340 16 65 732 7 753 0.0 543
MS.gene036000.t1 AT1G10900 41.821 758 340 16 65 732 7 753 0.0 543
MS.gene036000.t1 AT1G60890 40.722 776 338 18 64 731 6 767 1.49e-179 533
MS.gene036000.t1 AT1G60890 40.409 782 332 19 64 731 18 779 3.14e-179 533
MS.gene036000.t1 AT1G01460 37.825 423 214 8 355 732 4 422 1.43e-80 265
MS.gene036000.t1 AT4G01190 38.095 399 189 6 371 730 12 391 6.01e-78 257
MS.gene036000.t1 AT4G01190 38.095 399 189 6 371 730 22 401 6.78e-78 257
MS.gene036000.t1 AT4G01190 38.095 399 189 6 371 730 22 401 6.78e-78 257
MS.gene036000.t1 AT1G77660 37.126 167 105 0 66 232 175 341 6.87e-27 114
MS.gene036000.t1 AT1G77660 36.508 126 80 0 71 196 226 351 1.02e-16 84.0
MS.gene036000.t1 AT1G21920 37.423 163 102 0 70 232 175 337 6.47e-25 107
MS.gene036000.t1 AT1G21920 38.281 128 79 0 71 198 222 349 5.36e-18 87.0
MS.gene036000.t1 AT1G21920 37.423 163 102 0 70 232 175 337 8.40e-25 108
MS.gene036000.t1 AT1G21920 38.281 128 79 0 71 198 222 349 6.41e-18 87.4
MS.gene036000.t1 AT2G35170 35.404 161 104 0 72 232 229 389 4.16e-23 103
MS.gene036000.t1 AT2G35170 37.984 129 80 0 71 199 274 402 1.12e-21 99.8
MS.gene036000.t1 AT4G17080 34.969 163 106 0 70 232 258 420 1.52e-22 102
MS.gene036000.t1 AT4G17080 37.209 129 81 0 71 199 305 433 4.86e-21 98.2
MS.gene036000.t1 AT4G17080 32.867 143 94 1 90 232 234 374 6.00e-13 72.4
MS.gene036000.t1 AT1G34260 34.653 202 102 11 398 579 952 1143 1.74e-14 78.2
MS.gene036000.t1 AT1G34260 34.653 202 102 11 398 579 1192 1383 1.86e-14 78.2
MS.gene036000.t1 AT1G34260 34.653 202 102 11 398 579 1192 1383 1.86e-14 78.2
MS.gene036000.t1 AT1G34260 34.653 202 102 11 398 579 1192 1383 1.86e-14 78.2
MS.gene036000.t1 AT1G75010 30.469 128 87 2 94 220 604 730 1.16e-12 72.0

Find 204 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGCGTTCTATATTT+TGG 0.084583 5.3:+47193122 MS.gene036000:CDS
CACCAGTGAATTCTCATATT+TGG 0.134783 5.3:-47191468 None:intergenic
TGGCGTAACGGCGTTATATC+TGG 0.180746 5.3:+47190011 MS.gene036000:CDS
TGACAACACATATGACAAAA+TGG 0.245724 5.3:+47192011 MS.gene036000:CDS
ACATTTGAGGAAGCTGTTTC+AGG 0.245765 5.3:+47190922 MS.gene036000:CDS
CTGGGAAGGGTTCGTTAGTT+TGG 0.245826 5.3:+47190030 MS.gene036000:CDS
CACTGGTGACAAAATTCTTT+GGG 0.252892 5.3:+47191483 MS.gene036000:CDS
TTAATTTGCAATTGGGGATT+AGG 0.273921 5.3:+47190444 MS.gene036000:CDS
GCCAACCGTTCTGCTCTTGC+TGG 0.278983 5.3:-47193026 None:intergenic
ATCCAAAGCTATACTCAAAA+AGG 0.280883 5.3:+47193240 MS.gene036000:CDS
TCTCCACCGGCGGTGATTGC+TGG 0.283531 5.3:+47189525 MS.gene036000:CDS
CTTGGAAAACGAGAAAATTA+TGG 0.284377 5.3:+47191954 MS.gene036000:CDS
TGTTTCGTGTACAACGAAAT+TGG 0.287459 5.3:+47191784 MS.gene036000:CDS
ATCAAGATTCAACATGGTTT+TGG 0.288341 5.3:+47190113 MS.gene036000:CDS
TGAGCGGGATTGTGAGTTCT+TGG 0.304803 5.3:+47191936 MS.gene036000:CDS
AAATCAAATCGTCTATGAAT+TGG 0.308050 5.3:-47191672 None:intergenic
TTGATCCTAAAGAGAAGTTT+TGG 0.311672 5.3:+47190627 MS.gene036000:CDS
TCACTGGTGACAAAATTCTT+TGG 0.313285 5.3:+47191482 MS.gene036000:CDS
TGGAAACGTGGAAAAGCTTC+AGG 0.316635 5.3:+47189735 MS.gene036000:CDS
TTTGTGATCATCATGATTCA+TGG 0.316766 5.3:-47193364 None:intergenic
CTTGTCCAAAACTTCTCTTT+AGG 0.323734 5.3:-47190632 None:intergenic
TCTTCAGAAAATCATTAATC+AGG 0.329444 5.3:+47192988 MS.gene036000:intron
AATTATGGACTACAGTCTTT+TGG 0.340214 5.3:+47191969 MS.gene036000:CDS
TTCTGCTCTTGCTGGCATAT+TGG 0.341644 5.3:-47193018 None:intergenic
TCGAAGCAGAGTTGCAAGAT+AGG 0.359055 5.3:+47192196 MS.gene036000:CDS
TTGATAACACCTTGTCCTTT+CGG 0.360621 5.3:-47190095 None:intergenic
TGGGAAGGGTTCGTTAGTTT+GGG 0.361513 5.3:+47190031 MS.gene036000:CDS
GGTTCGTTAGTTTGGGTTAA+CGG 0.369043 5.3:+47190038 MS.gene036000:CDS
TAAGCCTCTCCGCTGCTATA+AGG 0.369824 5.3:-47193101 None:intergenic
ATGGATCCGGGAAGTATCTA+TGG 0.372629 5.3:+47189685 MS.gene036000:CDS
CTGATGAACAGTAAAGTCTA+AGG 0.379526 5.3:-47193436 None:intergenic
TTGAAACCCACTTGCAAAAG+AGG 0.384867 5.3:+47193411 MS.gene036000:CDS
GGACGTTACGTTTGGAAGAA+TGG 0.386687 5.3:+47189969 MS.gene036000:CDS
GAAGAATATTCATTGAAGAT+TGG 0.390671 5.3:+47193279 MS.gene036000:CDS
GACAACACATATGACAAAAT+GGG 0.392767 5.3:+47192012 MS.gene036000:CDS
TAATCATGAATCTGTCATCT+TGG 0.402081 5.3:-47191039 None:intergenic
TCTGTTGATACTACTGTTAG+TGG 0.407554 5.3:+47190188 MS.gene036000:CDS
GTTGATGCTTAATTTGCAAT+TGG 0.408791 5.3:+47190436 MS.gene036000:CDS
ATGGTCAAGGACGTTACGTT+TGG 0.409474 5.3:+47189961 MS.gene036000:CDS
GTTTCATCAATCTCATCCTC+AGG 0.418360 5.3:-47191729 None:intergenic
GGATCCATTCGGTACGTTGC+CGG 0.418393 5.3:-47189670 None:intergenic
TTGATGAGGCGGGGTAATCT+TGG 0.419366 5.3:-47190672 None:intergenic
TTGGGTTAACGGAAACCGTT+TGG 0.419511 5.3:+47190049 MS.gene036000:CDS
GATAGGGATCGAGTTAAATC+TGG 0.420387 5.3:+47192213 MS.gene036000:CDS
GTCGGTCCATAGATACTTCC+CGG 0.423054 5.3:-47189691 None:intergenic
GGCAACGTACCGAATGGATC+CGG 0.425374 5.3:+47189672 MS.gene036000:CDS
TTTGATTCTTCAGACATTTG+AGG 0.429922 5.3:+47190909 MS.gene036000:intron
TTGGAGGGTTTGTGGGAGAA+TGG 0.430235 5.3:+47190068 MS.gene036000:CDS
TTCTATGCCGGAAGTTTCTC+CGG 0.430931 5.3:+47189651 MS.gene036000:CDS
TACGTTGCCGGAGAAACTTC+CGG 0.431893 5.3:-47189658 None:intergenic
TTGATGCTTAATTTGCAATT+GGG 0.435208 5.3:+47190437 MS.gene036000:CDS
AACTCAAGTGAGATTCTTTG+AGG 0.444966 5.3:-47193475 None:intergenic
GACGTTACGTTTGGAAGAAT+GGG 0.445546 5.3:+47189970 MS.gene036000:CDS
CTGGTCAAACTATTTCTAAA+GGG 0.449919 5.3:+47190399 MS.gene036000:CDS
CTTAGAGAACTTTCCTCTCC+CGG 0.455504 5.3:+47190989 MS.gene036000:CDS
CATAGACGATTTGATTTGAA+AGG 0.457560 5.3:+47191678 MS.gene036000:CDS
GTTCAGATCAAGGTCTTTGA+GGG 0.462840 5.3:-47191757 None:intergenic
TCCTTGTTGTTTCTCTTCTG+AGG 0.466238 5.3:+47190367 MS.gene036000:CDS
ATCAAACCGCGGAGTTTCGA+TGG 0.467094 5.3:+47190690 MS.gene036000:CDS
CAAATGGCTGATTCCACCAT+TGG 0.468458 5.3:-47193075 None:intergenic
TCCGATAGAAAACACGGGTT+CGG 0.471872 5.3:+47189879 MS.gene036000:CDS
AATCATGAATCTGTCATCTT+GGG 0.472481 5.3:-47191038 None:intergenic
GTACATTGTGTGAAACCTAT+TGG 0.473664 5.3:+47191506 MS.gene036000:CDS
CCTGGTCAAACTATTTCTAA+AGG 0.477641 5.3:+47190398 MS.gene036000:CDS
TCAGATCCGGTTTATTGTGA+TGG 0.478024 5.3:+47191626 MS.gene036000:intron
GAAACCGTTTGGAGGGTTTG+TGG 0.478922 5.3:+47190060 MS.gene036000:CDS
CCCTCGTAAGTCGCGCCTGA+AGG 0.482364 5.3:-47189777 None:intergenic
GGCGTAACGGCGTTATATCT+GGG 0.483135 5.3:+47190012 MS.gene036000:CDS
GATTGCCCATCACAATAAAC+CGG 0.485074 5.3:-47191632 None:intergenic
AAACCGTTTGGAGGGTTTGT+GGG 0.486108 5.3:+47190061 MS.gene036000:CDS
ATACCAGTGCGTAGAAGAAA+AGG 0.493562 5.3:-47192042 None:intergenic
TCGGGTCGAATGGAAGGATT+CGG 0.497771 5.3:+47189810 MS.gene036000:CDS
GATACTACTGTTAGTGGTAG+AGG 0.499269 5.3:+47190194 MS.gene036000:CDS
GATTATATGTTGGCTATATG+TGG 0.502251 5.3:+47190956 MS.gene036000:CDS
AACTCCGCGGTTTGATGAGG+CGG 0.504312 5.3:-47190683 None:intergenic
AGTTCAGATCAAGGTCTTTG+AGG 0.508946 5.3:-47191758 None:intergenic
GATTCCCAAATACAAATCCT+AGG 0.509645 5.3:-47190239 None:intergenic
CAGATCCGGTTTATTGTGAT+GGG 0.510029 5.3:+47191627 MS.gene036000:intron
GTTGCATGTACGAAGGTGAA+TGG 0.510431 5.3:+47189715 MS.gene036000:CDS
GTGGAAAAGCTTCAGGGAAA+GGG 0.511451 5.3:+47189742 MS.gene036000:CDS
ACTCCGCGGTTTGATGAGGC+GGG 0.514713 5.3:-47190682 None:intergenic
CGCTGCTATAAGGATTCAAA+TGG 0.515820 5.3:-47193091 None:intergenic
GCGATACATATCGCGGGTCA+TGG 0.517641 5.3:+47189853 MS.gene036000:CDS
GAAACCTATTGGAGGCCAAA+AGG 0.519281 5.3:+47191517 MS.gene036000:CDS
GAAGGATTCGGAACATTCGT+TGG 0.521458 5.3:+47189822 MS.gene036000:CDS
TCTTCTGAGGTTAAGAGACC+TGG 0.521675 5.3:+47190380 MS.gene036000:CDS
GCAATCACCGCCGGTGGAGA+AGG 0.522071 5.3:-47189522 None:intergenic
AAACTTACTTAATAAGATCC+TGG 0.522332 5.3:-47191809 None:intergenic
CGTGGAAAAGCTTCAGGGAA+AGG 0.523548 5.3:+47189741 MS.gene036000:CDS
AGATACTTCCCGGATCCATT+CGG 0.526389 5.3:-47189681 None:intergenic
TTAGAGAACTTTCCTCTCCC+GGG 0.528049 5.3:+47190990 MS.gene036000:CDS
CGAAGCAGAGTTGCAAGATA+GGG 0.528077 5.3:+47192197 MS.gene036000:CDS
CCGAACGGAGATTTCTATGC+CGG 0.528423 5.3:+47189639 MS.gene036000:CDS
GTGATTTATACGAAGGGTGG+TGG 0.528555 5.3:+47189922 MS.gene036000:CDS
AGAGTTCAAGTCGGGTCGAA+TGG 0.530606 5.3:+47189800 MS.gene036000:CDS
CCTTTAGAAATAGTTTGACC+AGG 0.531392 5.3:-47190398 None:intergenic
CAAGAGCAGAACGGTTGGCA+AGG 0.532403 5.3:+47193030 MS.gene036000:CDS
CAACATTCCTGAGCCGGAGA+AGG 0.533390 5.3:+47189491 MS.gene036000:CDS
TGGACAAGGTTTCCGAGTGA+AGG 0.537324 5.3:+47190647 MS.gene036000:CDS
TACGAGGGAGAGTTCAAGTC+GGG 0.538370 5.3:+47189792 MS.gene036000:CDS
TGATGCTTAATTTGCAATTG+GGG 0.539661 5.3:+47190438 MS.gene036000:CDS
TTCAAGTCGGGTCGAATGGA+AGG 0.541704 5.3:+47189804 MS.gene036000:CDS
CAGATCAAGGTCTTTGAGGG+TGG 0.547100 5.3:-47191754 None:intergenic
CTTTCCTCTCCCGGGAAAAG+CGG 0.547869 5.3:+47190998 MS.gene036000:CDS
AGCTTCACGGTGGTTTCCGA+TGG 0.550449 5.3:+47189591 MS.gene036000:CDS
TTCTACCTCCGCCTTGTGAA+CGG 0.551236 5.3:-47189554 None:intergenic
ATTATATGTTGGCTATATGT+GGG 0.552492 5.3:+47190957 MS.gene036000:CDS
AGTAACACCGACGAGCTTCA+CGG 0.555360 5.3:+47189578 MS.gene036000:CDS
GAAGAGCAACATTCCTGAGC+CGG 0.557996 5.3:+47189485 MS.gene036000:CDS
GCAACGTACCGAATGGATCC+GGG 0.560372 5.3:+47189673 MS.gene036000:CDS
GGAAACGTGGAAAAGCTTCA+GGG 0.560933 5.3:+47189736 MS.gene036000:CDS
TCTCCCACAAACCCTCCAAA+CGG 0.561965 5.3:-47190064 None:intergenic
TTCATCAGATCACTGTAAGT+GGG 0.563085 5.3:+47193451 MS.gene036000:CDS
ATTTGTATTTGGGAATCTGA+AGG 0.563741 5.3:+47190245 MS.gene036000:CDS
TTTGATCAATACACCAATGG+TGG 0.566117 5.3:+47193062 MS.gene036000:CDS
TGGGAATCTGAAGGTGAAGC+TGG 0.566561 5.3:+47190254 MS.gene036000:CDS
TGTTGTCATCACGAAAATGA+AGG 0.567651 5.3:-47191996 None:intergenic
TCTTTAGGATCAAAATCACT+AGG 0.567718 5.3:-47190617 None:intergenic
ATAGCCAACATATAATCAGC+AGG 0.569375 5.3:-47190950 None:intergenic
GAAACACATAGTTCAGATCA+AGG 0.569553 5.3:-47191767 None:intergenic
TGAAACCCACTTGCAAAAGA+GGG 0.573637 5.3:+47193412 MS.gene036000:CDS
GTTCATCAGATCACTGTAAG+TGG 0.573715 5.3:+47193450 MS.gene036000:CDS
GGAACATTCGTTGGATCCGA+CGG 0.574126 5.3:+47189831 MS.gene036000:CDS
GCCAGCAAGAGCAGAACGGT+TGG 0.576008 5.3:+47193025 MS.gene036000:CDS
AGTGAAGAAATCTGAAGTCA+AGG 0.576419 5.3:+47191066 MS.gene036000:CDS
TTCTCCGGCAACGTACCGAA+TGG 0.579587 5.3:+47189666 MS.gene036000:CDS
CGAAACTCCGCGGTTTGATG+AGG 0.581720 5.3:-47190686 None:intergenic
TCGATGGAAAGATTACTGTC+CGG 0.582178 5.3:+47190706 MS.gene036000:CDS
CCGGCATAGAAATCTCCGTT+CGG 0.582234 5.3:-47189639 None:intergenic
GCCTTCAGGCGCGACTTACG+AGG 0.585744 5.3:+47189776 MS.gene036000:CDS
TGGGAGAATGGTGTTCCGAA+AGG 0.586485 5.3:+47190080 MS.gene036000:CDS
GGTTAACGGAAACCGTTTGG+AGG 0.586593 5.3:+47190052 MS.gene036000:CDS
GTGTTCCAGACAAATTGAGC+GGG 0.588866 5.3:+47191921 MS.gene036000:intron
AGAAAATCATTAATCAGGCT+AGG 0.589168 5.3:+47192993 MS.gene036000:intron
GTGTAGATACACGGTTGGGA+AGG 0.589450 5.3:+47190568 MS.gene036000:intron
TAACGGCGTTATATCTGGGA+AGG 0.589873 5.3:+47190016 MS.gene036000:CDS
GTCCAAATATGAGAATTCAC+TGG 0.592833 5.3:+47191466 MS.gene036000:CDS
CTCAACAACGGATCTACCAT+CGG 0.594963 5.3:-47189607 None:intergenic
TGATCCTGCTGATTATATGT+TGG 0.603422 5.3:+47190946 MS.gene036000:CDS
GGAAAACAAACCTTCTCCAC+CGG 0.604991 5.3:+47189512 MS.gene036000:CDS
AATGGTGTTCCGAAAGGACA+AGG 0.606673 5.3:+47190086 MS.gene036000:CDS
GTTAACGGAAACCGTTTGGA+GGG 0.607741 5.3:+47190053 MS.gene036000:CDS
GGAATGAGTATGTTGGTGAA+TGG 0.608130 5.3:+47189991 MS.gene036000:CDS
AGAAGCCGTTCACAAGGCGG+AGG 0.613179 5.3:+47189549 MS.gene036000:CDS
TATGTTGGTGAATGGCGTAA+CGG 0.613312 5.3:+47189999 MS.gene036000:CDS
AAGAATGGGAATGAGTATGT+TGG 0.613469 5.3:+47189984 MS.gene036000:CDS
ATACTACTGTTAGTGGTAGA+GGG 0.613626 5.3:+47190195 MS.gene036000:CDS
GAGCAGAACGGTTGGCAAGG+AGG 0.613970 5.3:+47193033 MS.gene036000:CDS
GGTCAGAAACGTTACGCGAA+CGG 0.615476 5.3:+47189900 MS.gene036000:CDS
ACTGGTGACAAAATTCTTTG+GGG 0.617270 5.3:+47191484 MS.gene036000:CDS
CTTCCAGCAATCACCGCCGG+TGG 0.622524 5.3:-47189528 None:intergenic
GTAATCTTGGATCCTTCACT+CGG 0.623506 5.3:-47190659 None:intergenic
CTTCTTCCAGCAATCACCGC+CGG 0.623571 5.3:-47189531 None:intergenic
CTCCGCGGTTTGATGAGGCG+GGG 0.626199 5.3:-47190681 None:intergenic
ACAACACATATGACAAAATG+GGG 0.628764 5.3:+47192013 MS.gene036000:CDS
TGATGTGTAGATACACGGTT+GGG 0.629173 5.3:+47190564 MS.gene036000:intron
TGATATTGTTGATAATGTCG+AGG 0.629658 5.3:+47190289 MS.gene036000:CDS
GCTGGAAGAAGCCGTTCACA+AGG 0.630714 5.3:+47189543 MS.gene036000:CDS
TGGAAGCGTAACGTTCAAGA+TGG 0.631023 5.3:+47189942 MS.gene036000:CDS
GAACGTTTCCTCATCAACAC+AGG 0.631655 5.3:-47190164 None:intergenic
GCGAACGGTGATTTATACGA+AGG 0.632599 5.3:+47189915 MS.gene036000:CDS
GGGATCGAGTTAAATCTGGA+AGG 0.635478 5.3:+47192217 MS.gene036000:CDS
GATTTGAAAGGATCTTCACA+TGG 0.636840 5.3:+47191690 MS.gene036000:CDS
CCTTCAGGCGCGACTTACGA+GGG 0.638477 5.3:+47189777 MS.gene036000:CDS
CATTTGAATCCTTATAGCAG+CGG 0.638848 5.3:+47193092 MS.gene036000:CDS
TGGAGCTCCGATAGAAAACA+CGG 0.638988 5.3:+47189873 MS.gene036000:CDS
GTGATGTGTAGATACACGGT+TGG 0.647117 5.3:+47190563 MS.gene036000:intron
CATTGTGTGAAACCTATTGG+AGG 0.647839 5.3:+47191509 MS.gene036000:CDS
AACGGCGTTATATCTGGGAA+GGG 0.647935 5.3:+47190017 MS.gene036000:CDS
AACGTTTCCTCATCAACACA+GGG 0.651828 5.3:-47190163 None:intergenic
TCATCAGATCACTGTAAGTG+GGG 0.653684 5.3:+47193452 MS.gene036000:CDS
GGTGAACGATGAAGTTGTTG+AGG 0.655019 5.3:+47189449 MS.gene036000:CDS
GAAACCACCGTGAAGCTCGT+CGG 0.655705 5.3:-47189585 None:intergenic
CGTAACGTTCAAGATGGTCA+AGG 0.657499 5.3:+47189948 MS.gene036000:CDS
ACGGTGATTTATACGAAGGG+TGG 0.664730 5.3:+47189919 MS.gene036000:CDS
GTTGAGAGAGTACTTCCGAA+CGG 0.664758 5.3:+47189624 MS.gene036000:CDS
CCCGCGATATGTATCGCCGT+CGG 0.665886 5.3:-47189847 None:intergenic
GGTGTTATCAAGATTCAACA+TGG 0.666932 5.3:+47190107 MS.gene036000:CDS
TGTACAACGAAATTGGTACC+AGG 0.667243 5.3:+47191791 MS.gene036000:CDS
AAACAAACCTTCTCCACCGG+CGG 0.669189 5.3:+47189515 MS.gene036000:CDS
GGGAAGTATCTATGGACCGA+CGG 0.669212 5.3:+47189693 MS.gene036000:CDS
TTCGAAAATGAGTGATACAG+TGG 0.669503 5.3:+47189428 None:intergenic
CCGACGGCGATACATATCGC+GGG 0.670057 5.3:+47189847 MS.gene036000:CDS
CGAACGGTGATTTATACGAA+GGG 0.671404 5.3:+47189916 MS.gene036000:CDS
TGTGTTCCAGACAAATTGAG+CGG 0.672020 5.3:+47191920 MS.gene036000:intron
TCCGACGGCGATACATATCG+CGG 0.673989 5.3:+47189846 MS.gene036000:CDS
GAATCCTTATAGCAGCGGAG+AGG 0.674107 5.3:+47193097 MS.gene036000:CDS
CATACTGAGAAGTTCATGCG+TGG 0.677957 5.3:+47192162 MS.gene036000:CDS
GGAAGAAGCCGTTCACAAGG+CGG 0.683363 5.3:+47189546 MS.gene036000:CDS
TTATATGTTGGCTATATGTG+GGG 0.684561 5.3:+47190958 MS.gene036000:CDS
ACCTCAGAAGAGAAACAACA+AGG 0.687681 5.3:-47190368 None:intergenic
ATCTTTCCATCGAAACTCCG+CGG 0.690643 5.3:-47190696 None:intergenic
ACCTTCGTACATGCAACCGT+CGG 0.692042 5.3:-47189709 None:intergenic
TCATGTGATGTGTAGATACA+CGG 0.696709 5.3:+47190559 MS.gene036000:intron
ATATGCCAGCAAGAGCAGAA+CGG 0.698498 5.3:+47193021 MS.gene036000:CDS
CGGAAGTACTCTCTCAACAA+CGG 0.711881 5.3:-47189619 None:intergenic
AACACCGACGAGCTTCACGG+TGG 0.720896 5.3:+47189581 MS.gene036000:CDS
TTACGAGGGAGAGTTCAAGT+CGG 0.724697 5.3:+47189791 MS.gene036000:CDS
TACGAAGGTGAATGGAAACG+TGG 0.729766 5.3:+47189723 MS.gene036000:CDS
GGAGCTCCGATAGAAAACAC+GGG 0.731752 5.3:+47189874 MS.gene036000:CDS
ACCGACGGTTGCATGTACGA+AGG 0.732846 5.3:+47189708 MS.gene036000:CDS
TACCCCGCCTCATCAAACCG+CGG 0.741865 5.3:+47190679 MS.gene036000:CDS
TCGTGCAACAGATAAACCTG+AGG 0.756825 5.3:+47191713 MS.gene036000:CDS
ACGTTTCCTCATCAACACAG+GGG 0.812629 5.3:-47190162 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGATTTAATTTATCAAA+TGG + chr5.3:47192289-47192308 MS.gene036000:intron 10.0%
!!! TTTGATTTCTAATATATTTT+TGG + chr5.3:47192714-47192733 MS.gene036000:intron 10.0%
!! CTTAAATTCAAATTCTTTAT+TGG + chr5.3:47192547-47192566 MS.gene036000:intron 15.0%
!!! TATTTTTTTTCTTTCTTTCT+AGG + chr5.3:47191844-47191863 MS.gene036000:intron 15.0%
!! AAAAATCCAGGAAAAATATT+TGG + chr5.3:47193384-47193403 MS.gene036000:CDS 20.0%
!! CAATAAGAATAACAAAACAA+GGG - chr5.3:47190481-47190500 None:intergenic 20.0%
!! TAAAGAATTTGAATTTAAGC+CGG - chr5.3:47192546-47192565 None:intergenic 20.0%
!! TCAATAAGAATAACAAAACA+AGG - chr5.3:47190482-47190501 None:intergenic 20.0%
!! TTCTTTATTGGCATTAAAAT+TGG + chr5.3:47192559-47192578 MS.gene036000:intron 20.0%
!!! ATTTAATTTATCAAATGGCT+GGG + chr5.3:47192294-47192313 MS.gene036000:intron 20.0%
!!! TAAATAATCATTTTTCCACA+TGG - chr5.3:47191190-47191209 None:intergenic 20.0%
!!! TTGTTTTAATGTTGATGTTT+TGG + chr5.3:47190779-47190798 MS.gene036000:intron 20.0%
! AAACTTACTTAATAAGATCC+TGG - chr5.3:47191812-47191831 None:intergenic 25.0%
! AAATCAAATCGTCTATGAAT+TGG - chr5.3:47191675-47191694 None:intergenic 25.0%
! ATCAGAAAGGAATAAATTGT+AGG + chr5.3:47192507-47192526 MS.gene036000:intron 25.0%
! ATCTCTTGAAAATATCAGAA+AGG + chr5.3:47192494-47192513 MS.gene036000:intron 25.0%
! ATTATGTTGGCAAATTAAGT+GGG + chr5.3:47192623-47192642 MS.gene036000:intron 25.0%
! CAATCAATGAATTTATTGTC+AGG - chr5.3:47192740-47192759 None:intergenic 25.0%
! CGTAATCTTGAGATATATTA+GGG + chr5.3:47192419-47192438 MS.gene036000:intron 25.0%
! GAAGAATATTCATTGAAGAT+TGG + chr5.3:47193279-47193298 MS.gene036000:CDS 25.0%
! GATATATTATTGTAGCTGTA+TGG + chr5.3:47191552-47191571 MS.gene036000:intron 25.0%
! TCAACAATCTTTAACAGTTT+AGG - chr5.3:47192907-47192926 None:intergenic 25.0%
! TCGTAATCTTGAGATATATT+AGG + chr5.3:47192418-47192437 MS.gene036000:intron 25.0%
! TCTTCAGAAAATCATTAATC+AGG + chr5.3:47192988-47193007 MS.gene036000:intron 25.0%
! TTCCTTAAAATTAGTGTAGA+TGG + chr5.3:47192260-47192279 MS.gene036000:intron 25.0%
!! AAACTTCCAAATATTTTTCC+TGG - chr5.3:47193393-47193412 None:intergenic 25.0%
!! ATCCATCTACACTAATTTTA+AGG - chr5.3:47192265-47192284 None:intergenic 25.0%
!! ATGATTGCGTTCTATATTTT+GGG + chr5.3:47193123-47193142 MS.gene036000:CDS 25.0%
!! ATTATATGTTGGCTATATGT+GGG + chr5.3:47190957-47190976 MS.gene036000:CDS 25.0%
!! ATTTTCCTAGGATTTGTATT+TGG + chr5.3:47190234-47190253 MS.gene036000:CDS 25.0%
!! GATTTAATTTATCAAATGGC+TGG + chr5.3:47192293-47192312 MS.gene036000:intron 25.0%
!! TATGATTGCGTTCTATATTT+TGG + chr5.3:47193122-47193141 MS.gene036000:CDS 25.0%
!! TTTTCCTAGGATTTGTATTT+GGG + chr5.3:47190235-47190254 MS.gene036000:CDS 25.0%
!!! TTGATGCTTAATTTGCAATT+GGG + chr5.3:47190437-47190456 MS.gene036000:CDS 25.0%
AAAGAACATGAATGCAAAGA+AGG - chr5.3:47192782-47192801 None:intergenic 30.0%
AATACGTATCTGACAAGTTA+TGG + chr5.3:47191894-47191913 MS.gene036000:intron 30.0%
AATCATGAATCTGTCATCTT+GGG - chr5.3:47191041-47191060 None:intergenic 30.0%
ACAACACATATGACAAAATG+GGG + chr5.3:47192013-47192032 MS.gene036000:CDS 30.0%
ACCTGTGTTGAAATTAATTC+GGG + chr5.3:47190809-47190828 MS.gene036000:intron 30.0%
AGAAAATCATTAATCAGGCT+AGG + chr5.3:47192993-47193012 MS.gene036000:intron 30.0%
ATCCAAAGCTATACTCAAAA+AGG + chr5.3:47193240-47193259 MS.gene036000:CDS 30.0%
ATTTGTATTTGGGAATCTGA+AGG + chr5.3:47190245-47190264 MS.gene036000:CDS 30.0%
CATTATGTTGGCAAATTAAG+TGG + chr5.3:47192622-47192641 MS.gene036000:intron 30.0%
CTGAAATTGTTGTCTGTATA+TGG - chr5.3:47192823-47192842 None:intergenic 30.0%
CTTAATACATGTCACGAAAT+TGG - chr5.3:47192955-47192974 None:intergenic 30.0%
CTTGGAAAACGAGAAAATTA+TGG + chr5.3:47191954-47191973 MS.gene036000:CDS 30.0%
GACAACACATATGACAAAAT+GGG + chr5.3:47192012-47192031 MS.gene036000:CDS 30.0%
GACCTGTGTTGAAATTAATT+CGG + chr5.3:47190808-47190827 MS.gene036000:intron 30.0%
GAGTTATACCTAAAAACAAC+CGG - chr5.3:47190728-47190747 None:intergenic 30.0%
GATAAAATATCTTCTCCTGA+AGG + chr5.3:47193331-47193350 MS.gene036000:intron 30.0%
GTTGTCTGTATATGGTATAT+GGG - chr5.3:47192815-47192834 None:intergenic 30.0%
TAAGAACAAAACATACCATG+TGG + chr5.3:47191172-47191191 MS.gene036000:intron 30.0%
TAATCATGAATCTGTCATCT+TGG - chr5.3:47191042-47191061 None:intergenic 30.0%
TCCAATAACAATGAAAAGTC+AGG - chr5.3:47191603-47191622 None:intergenic 30.0%
TGACAACACATATGACAAAA+TGG + chr5.3:47192011-47192030 MS.gene036000:CDS 30.0%
TGTTATTGGAAAATCAGATC+CGG + chr5.3:47191613-47191632 MS.gene036000:intron 30.0%
TGTTGTCTGTATATGGTATA+TGG - chr5.3:47192816-47192835 None:intergenic 30.0%
TTTCGTGACATGTATTAAGT+AGG + chr5.3:47192956-47192975 MS.gene036000:intron 30.0%
TTTGATTCTTCAGACATTTG+AGG + chr5.3:47190909-47190928 MS.gene036000:intron 30.0%
TTTGTGATCATCATGATTCA+TGG - chr5.3:47193367-47193386 None:intergenic 30.0%
! AAAAGGTTTCGAGATTTTGT+TGG + chr5.3:47193257-47193276 MS.gene036000:CDS 30.0%
! ATCAAGATTCAACATGGTTT+TGG + chr5.3:47190113-47190132 MS.gene036000:CDS 30.0%
! ATTTCTGACTTCCAACTTTT+AGG + chr5.3:47191406-47191425 MS.gene036000:intron 30.0%
! GATTATATGTTGGCTATATG+TGG + chr5.3:47190956-47190975 MS.gene036000:CDS 30.0%
! GTAAGTAGTTTGCATTATGT+TGG + chr5.3:47192610-47192629 MS.gene036000:intron 30.0%
! TAAAAGATTCCAACTGATTC+AGG - chr5.3:47192372-47192391 None:intergenic 30.0%
! TATCCTCATTTTGTACTAAC+TGG - chr5.3:47193315-47193334 None:intergenic 30.0%
! TGAAATTAATTCGGGTGTTT+TGG + chr5.3:47190817-47190836 MS.gene036000:intron 30.0%
! TGAATGAGAAGAATTTTCCT+AGG + chr5.3:47190222-47190241 MS.gene036000:CDS 30.0%
! TGATTGCGTTCTATATTTTG+GGG + chr5.3:47193124-47193143 MS.gene036000:CDS 30.0%
! TTATATGTTGGCTATATGTG+GGG + chr5.3:47190958-47190977 MS.gene036000:CDS 30.0%
! TTGATCCTAAAGAGAAGTTT+TGG + chr5.3:47190627-47190646 MS.gene036000:CDS 30.0%
!! AAGCTTTTCCAATTTAGCTT+TGG - chr5.3:47192338-47192357 None:intergenic 30.0%
!! AATTATGGACTACAGTCTTT+TGG + chr5.3:47191969-47191988 MS.gene036000:CDS 30.0%
!! CATAGACGATTTGATTTGAA+AGG + chr5.3:47191678-47191697 MS.gene036000:CDS 30.0%
!! CTGGTCAAACTATTTCTAAA+GGG + chr5.3:47190399-47190418 MS.gene036000:CDS 30.0%
!! GATTTTGATCAATACACCAA+TGG + chr5.3:47193059-47193078 MS.gene036000:CDS 30.0%
!! GTGTCTTGTTGAATTTTACA+CGG + chr5.3:47191126-47191145 MS.gene036000:intron 30.0%
!! GTTGATGCTTAATTTGCAAT+TGG + chr5.3:47190436-47190455 MS.gene036000:CDS 30.0%
!! GTTTTGGATGATTTTTGGAT+TGG + chr5.3:47190833-47190852 MS.gene036000:intron 30.0%
!! TCTTTAGGATCAAAATCACT+AGG - chr5.3:47190620-47190639 None:intergenic 30.0%
!! TGATATTGTTGATAATGTCG+AGG + chr5.3:47190289-47190308 MS.gene036000:CDS 30.0%
!! TGATGCTTAATTTGCAATTG+GGG + chr5.3:47190438-47190457 MS.gene036000:CDS 30.0%
!! TGTCTTGTTGAATTTTACAC+GGG + chr5.3:47191127-47191146 MS.gene036000:intron 30.0%
!! TTAATTTGCAATTGGGGATT+AGG + chr5.3:47190444-47190463 MS.gene036000:CDS 30.0%
!!! AACCTTTTTGAGTATAGCTT+TGG - chr5.3:47193245-47193264 None:intergenic 30.0%
!!! TTAATGTTGATGTTTTGGTG+AGG + chr5.3:47190784-47190803 MS.gene036000:intron 30.0%
AACACTCACTATAGAGCATA+TGG + chr5.3:47192071-47192090 MS.gene036000:intron 35.0%
AAGAATCCTGATTGCCTAAA+AGG - chr5.3:47192140-47192159 None:intergenic 35.0%
AAGAATGGGAATGAGTATGT+TGG + chr5.3:47189984-47190003 MS.gene036000:CDS 35.0%
ACCCGAATTAATTTCAACAC+AGG - chr5.3:47190813-47190832 None:intergenic 35.0%
ACTGGTGACAAAATTCTTTG+GGG + chr5.3:47191484-47191503 MS.gene036000:CDS 35.0%
ACTTGCAACCAAAGCTAAAT+TGG + chr5.3:47192327-47192346 MS.gene036000:intron 35.0%
AGAATCCTGATTGCCTAAAA+GGG - chr5.3:47192139-47192158 None:intergenic 35.0%
AGCTAAATTGGAAAAGCTTC+AGG + chr5.3:47192339-47192358 MS.gene036000:intron 35.0%
ATACTACTGTTAGTGGTAGA+GGG + chr5.3:47190195-47190214 MS.gene036000:CDS 35.0%
ATAGCCAACATATAATCAGC+AGG - chr5.3:47190953-47190972 None:intergenic 35.0%
CACCAGTGAATTCTCATATT+TGG - chr5.3:47191471-47191490 None:intergenic 35.0%
CACTATAGAGCATATGGTTA+TGG + chr5.3:47192077-47192096 MS.gene036000:intron 35.0%
CACTGGTGACAAAATTCTTT+GGG + chr5.3:47191483-47191502 MS.gene036000:CDS 35.0%
CATGATGATCACAAAAATCC+AGG + chr5.3:47193372-47193391 MS.gene036000:CDS 35.0%
CATTTGAATCCTTATAGCAG+CGG + chr5.3:47193092-47193111 MS.gene036000:CDS 35.0%
CGTATTCTATAACGATTCAC+TGG - chr5.3:47191880-47191899 None:intergenic 35.0%
CTAAATTGGAAAAGCTTCAG+GGG + chr5.3:47192341-47192360 MS.gene036000:intron 35.0%
CTGATGAACAGTAAAGTCTA+AGG - chr5.3:47193439-47193458 None:intergenic 35.0%
CTTACAAAACCTAAGTTGTC+TGG - chr5.3:47191263-47191282 None:intergenic 35.0%
CTTGTCCAAAACTTCTCTTT+AGG - chr5.3:47190635-47190654 None:intergenic 35.0%
GAAACACATAGTTCAGATCA+AGG - chr5.3:47191770-47191789 None:intergenic 35.0%
GATTCCCAAATACAAATCCT+AGG - chr5.3:47190242-47190261 None:intergenic 35.0%
GATTTGAAAGGATCTTCACA+TGG + chr5.3:47191690-47191709 MS.gene036000:CDS 35.0%
GCTAAATTGGAAAAGCTTCA+GGG + chr5.3:47192340-47192359 MS.gene036000:intron 35.0%
GGTAAGAATCTACGTTTAAC+CGG - chr5.3:47191321-47191340 None:intergenic 35.0%
GTAAGAATCTACGTTTAACC+GGG - chr5.3:47191320-47191339 None:intergenic 35.0%
GTACATTGTGTGAAACCTAT+TGG + chr5.3:47191506-47191525 MS.gene036000:CDS 35.0%
GTCCAAATATGAGAATTCAC+TGG + chr5.3:47191466-47191485 MS.gene036000:CDS 35.0%
GTTACGCAATTACAAGTCTT+TGG + chr5.3:47191354-47191373 MS.gene036000:intron 35.0%
TCACTGGTGACAAAATTCTT+TGG + chr5.3:47191482-47191501 MS.gene036000:CDS 35.0%
TCATGTGATGTGTAGATACA+CGG + chr5.3:47190559-47190578 MS.gene036000:intron 35.0%
TCTGTTGATACTACTGTTAG+TGG + chr5.3:47190188-47190207 MS.gene036000:CDS 35.0%
TGACCAGTTAGTACAAAATG+AGG + chr5.3:47193309-47193328 MS.gene036000:intron 35.0%
TGCAGGAAATAGTTGTTTGT+GGG + chr5.3:47192654-47192673 MS.gene036000:intron 35.0%
TGTTGTCATCACGAAAATGA+AGG - chr5.3:47191999-47192018 None:intergenic 35.0%
TGTTTCGTGTACAACGAAAT+TGG + chr5.3:47191784-47191803 MS.gene036000:CDS 35.0%
TTCATCAGATCACTGTAAGT+GGG + chr5.3:47193451-47193470 MS.gene036000:CDS 35.0%
TTGCAGGAAATAGTTGTTTG+TGG + chr5.3:47192653-47192672 MS.gene036000:intron 35.0%
TTTGATCAATACACCAATGG+TGG + chr5.3:47193062-47193081 MS.gene036000:CDS 35.0%
! AGTGAAGAAATCTGAAGTCA+AGG + chr5.3:47191066-47191085 MS.gene036000:CDS 35.0%
! ATCTATCGATCCATACCTTT+TGG - chr5.3:47191535-47191554 None:intergenic 35.0%
! CCTTTAGAAATAGTTTGACC+AGG - chr5.3:47190401-47190420 None:intergenic 35.0%
! GCCTGACTTTTCATTGTTAT+TGG + chr5.3:47191599-47191618 MS.gene036000:intron 35.0%
! GGTGTTATCAAGATTCAACA+TGG + chr5.3:47190107-47190126 MS.gene036000:CDS 35.0%
! GTTGAATTTTACACGGGTTT+GGG + chr5.3:47191133-47191152 MS.gene036000:intron 35.0%
! TGATCCTGCTGATTATATGT+TGG + chr5.3:47190946-47190965 MS.gene036000:CDS 35.0%
! TGCGTAACTTGCGTTATAAA+AGG - chr5.3:47191342-47191361 None:intergenic 35.0%
! TGGGGTTATCGATATTTTAC+AGG + chr5.3:47193142-47193161 MS.gene036000:CDS 35.0%
! TGTTGAATTTTACACGGGTT+TGG + chr5.3:47191132-47191151 MS.gene036000:intron 35.0%
! TTGATAACACCTTGTCCTTT+CGG - chr5.3:47190098-47190117 None:intergenic 35.0%
! TTTTCGAAACTCATCAGGAT+CGG - chr5.3:47190345-47190364 None:intergenic 35.0%
!! ACAACTTAGGTTTTGTAAGG+AGG + chr5.3:47191264-47191283 MS.gene036000:intron 35.0%
!! CAGACAACTTAGGTTTTGTA+AGG + chr5.3:47191261-47191280 MS.gene036000:intron 35.0%
!! CCTGGTCAAACTATTTCTAA+AGG + chr5.3:47190398-47190417 MS.gene036000:CDS 35.0%
!! TTAAGTGGGTATAGTTTTGC+AGG + chr5.3:47192637-47192656 MS.gene036000:intron 35.0%
!!! AAGATTCAACATGGTTTTGG+TGG + chr5.3:47190116-47190135 MS.gene036000:CDS 35.0%
!!! AGATTCAACATGGTTTTGGT+GGG + chr5.3:47190117-47190136 MS.gene036000:CDS 35.0%
!!! ATTACTGTCCGGTTGTTTTT+AGG + chr5.3:47190717-47190736 MS.gene036000:CDS 35.0%
!!! CATGGCATTTTTTAACCTTC+AGG - chr5.3:47193349-47193368 None:intergenic 35.0%
!!! CTAAAGAGAAGTTTTGGACA+AGG + chr5.3:47190633-47190652 MS.gene036000:CDS 35.0%
AACAATGAAAAGTCAGGCAC+AGG - chr5.3:47191597-47191616 None:intergenic 40.0%
AACGTTTCCTCATCAACACA+GGG - chr5.3:47190166-47190185 None:intergenic 40.0%
ACAATGAAAAGTCAGGCACA+GGG - chr5.3:47191596-47191615 None:intergenic 40.0%
ACCTCAGAAGAGAAACAACA+AGG - chr5.3:47190371-47190390 None:intergenic 40.0%
AGTTCAGATCAAGGTCTTTG+AGG - chr5.3:47191761-47191780 None:intergenic 40.0%
ATACCAGTGCGTAGAAGAAA+AGG - chr5.3:47192045-47192064 None:intergenic 40.0%
CAGATCCGGTTTATTGTGAT+GGG + chr5.3:47191627-47191646 MS.gene036000:intron 40.0%
CATTGTGTGAAACCTATTGG+AGG + chr5.3:47191509-47191528 MS.gene036000:CDS 40.0%
CGAACGGTGATTTATACGAA+GGG + chr5.3:47189916-47189935 MS.gene036000:CDS 40.0%
CGATTTGACTAACAGTTGAC+TGG - chr5.3:47191232-47191251 None:intergenic 40.0%
CGCTGCTATAAGGATTCAAA+TGG - chr5.3:47193094-47193113 None:intergenic 40.0%
GAATCCTGATTGCCTAAAAG+GGG - chr5.3:47192138-47192157 None:intergenic 40.0%
GACGTTACGTTTGGAAGAAT+GGG + chr5.3:47189970-47189989 MS.gene036000:CDS 40.0%
GATACTACTGTTAGTGGTAG+AGG + chr5.3:47190194-47190213 MS.gene036000:CDS 40.0%
GATAGGGATCGAGTTAAATC+TGG + chr5.3:47192213-47192232 MS.gene036000:CDS 40.0%
GATTGCCCATCACAATAAAC+CGG - chr5.3:47191635-47191654 None:intergenic 40.0%
GTAATCTTGGATCCTTCACT+CGG - chr5.3:47190662-47190681 None:intergenic 40.0%
GTTAGTAGACCAGACAACTT+AGG + chr5.3:47191251-47191270 MS.gene036000:intron 40.0%
GTTCAGATCAAGGTCTTTGA+GGG - chr5.3:47191760-47191779 None:intergenic 40.0%
GTTCATCAGATCACTGTAAG+TGG + chr5.3:47193450-47193469 MS.gene036000:CDS 40.0%
GTTTCATCAATCTCATCCTC+AGG - chr5.3:47191732-47191751 None:intergenic 40.0%
TATATTAGGGCTTGTGCTGT+TGG + chr5.3:47192432-47192451 MS.gene036000:intron 40.0%
TCAGATCCGGTTTATTGTGA+TGG + chr5.3:47191626-47191645 MS.gene036000:intron 40.0%
TCATCAGATCACTGTAAGTG+GGG + chr5.3:47193452-47193471 MS.gene036000:CDS 40.0%
TCGATGGAAAGATTACTGTC+CGG + chr5.3:47190706-47190725 MS.gene036000:CDS 40.0%
TGATGTGTAGATACACGGTT+GGG + chr5.3:47190564-47190583 MS.gene036000:intron 40.0%
TGTACAACGAAATTGGTACC+AGG + chr5.3:47191791-47191810 MS.gene036000:CDS 40.0%
TGTGTTCCAGACAAATTGAG+CGG + chr5.3:47191920-47191939 MS.gene036000:intron 40.0%
TTGAAACCCACTTGCAAAAG+AGG + chr5.3:47193411-47193430 MS.gene036000:CDS 40.0%
TTGTCGCTATTCGAATATCC+CGG + chr5.3:47191299-47191318 MS.gene036000:intron 40.0%
TTTCTGTTACTCTGTGTGTG+TGG + chr5.3:47192844-47192863 MS.gene036000:intron 40.0%
! ACATTTGAGGAAGCTGTTTC+AGG + chr5.3:47190922-47190941 MS.gene036000:CDS 40.0%
! CAGGGAAAGGGAAATTTTCA+TGG + chr5.3:47189754-47189773 MS.gene036000:CDS 40.0%
! GCGATATTCTTTCCCCTTTT+AGG + chr5.3:47192123-47192142 MS.gene036000:intron 40.0%
! GCTTCTATGTTTTATCGCGA+TGG + chr5.3:47190311-47190330 MS.gene036000:CDS 40.0%
! GGAATGAGTATGTTGGTGAA+TGG + chr5.3:47189991-47190010 MS.gene036000:CDS 40.0%
! GGATGTTTTCGAAACTCATC+AGG - chr5.3:47190350-47190369 None:intergenic 40.0%
! GGTTCGTTAGTTTGGGTTAA+CGG + chr5.3:47190038-47190057 MS.gene036000:CDS 40.0%
! TATGTTGGTGAATGGCGTAA+CGG + chr5.3:47189999-47190018 MS.gene036000:CDS 40.0%
!! ATGGACTACAGTCTTTTGGT+TGG + chr5.3:47191973-47191992 MS.gene036000:CDS 40.0%
!! CCAACTTTTAGGTGCTTCTT+CGG + chr5.3:47191417-47191436 MS.gene036000:intron 40.0%
!! CGGGTGTTTTGGATGATTTT+TGG + chr5.3:47190828-47190847 MS.gene036000:intron 40.0%
!! GAAGGTTTGTTTTCCTTCTC+CGG - chr5.3:47189507-47189526 None:intergenic 40.0%
!! TCCTTGTTGTTTCTCTTCTG+AGG + chr5.3:47190367-47190386 MS.gene036000:CDS 40.0%
!! TTAGGTTTTGTAAGGAGGTC+TGG + chr5.3:47191269-47191288 MS.gene036000:intron 40.0%
!!! ATGGTTTTGGTGGGTTTGTT+TGG + chr5.3:47190126-47190145 MS.gene036000:CDS 40.0%
AAACCGTTTGGAGGGTTTGT+GGG + chr5.3:47190061-47190080 MS.gene036000:CDS 45.0%
AACGGCGTTATATCTGGGAA+GGG + chr5.3:47190017-47190036 MS.gene036000:CDS 45.0%
AATGGTGTTCCGAAAGGACA+AGG + chr5.3:47190086-47190105 MS.gene036000:CDS 45.0%
ACAATCCCGCTCAATTTGTC+TGG - chr5.3:47191929-47191948 None:intergenic 45.0%
ACGGTGATTTATACGAAGGG+TGG + chr5.3:47189919-47189938 MS.gene036000:CDS 45.0%
ACGTTTCCTCATCAACACAG+GGG - chr5.3:47190165-47190184 None:intergenic 45.0%
AGATACTTCCCGGATCCATT+CGG - chr5.3:47189684-47189703 None:intergenic 45.0%
ATATGCCAGCAAGAGCAGAA+CGG + chr5.3:47193021-47193040 MS.gene036000:CDS 45.0%
ATCTTTCCATCGAAACTCCG+CGG - chr5.3:47190699-47190718 None:intergenic 45.0%
ATGGTCAAGGACGTTACGTT+TGG + chr5.3:47189961-47189980 MS.gene036000:CDS 45.0%
CATACTGAGAAGTTCATGCG+TGG + chr5.3:47192162-47192181 MS.gene036000:CDS 45.0%
CGAAGCAGAGTTGCAAGATA+GGG + chr5.3:47192197-47192216 MS.gene036000:CDS 45.0%
CGTAACGTTCAAGATGGTCA+AGG + chr5.3:47189948-47189967 MS.gene036000:CDS 45.0%
CTATTGGAGGCCAAAAGGTA+TGG + chr5.3:47191522-47191541 MS.gene036000:intron 45.0%
CTCAACAACGGATCTACCAT+CGG - chr5.3:47189610-47189629 None:intergenic 45.0%
CTTAGAGAACTTTCCTCTCC+CGG + chr5.3:47190989-47191008 MS.gene036000:CDS 45.0%
GAAACCTATTGGAGGCCAAA+AGG + chr5.3:47191517-47191536 MS.gene036000:CDS 45.0%
GAACGTTTCCTCATCAACAC+AGG - chr5.3:47190167-47190186 None:intergenic 45.0%
GAAGGATTCGGAACATTCGT+TGG + chr5.3:47189822-47189841 MS.gene036000:CDS 45.0%
GCGAACGGTGATTTATACGA+AGG + chr5.3:47189915-47189934 MS.gene036000:CDS 45.0%
GGAAAACAAACCTTCTCCAC+CGG + chr5.3:47189512-47189531 MS.gene036000:CDS 45.0%
GGAAACGTGGAAAAGCTTCA+GGG + chr5.3:47189736-47189755 MS.gene036000:CDS 45.0%
GGACGTTACGTTTGGAAGAA+TGG + chr5.3:47189969-47189988 MS.gene036000:CDS 45.0%
GGGATCGAGTTAAATCTGGA+AGG + chr5.3:47192217-47192236 MS.gene036000:CDS 45.0%
GGTGAACGATGAAGTTGTTG+AGG + chr5.3:47189449-47189468 MS.gene036000:CDS 45.0%
GTGATGTGTAGATACACGGT+TGG + chr5.3:47190563-47190582 MS.gene036000:intron 45.0%
GTGATTTATACGAAGGGTGG+TGG + chr5.3:47189922-47189941 MS.gene036000:CDS 45.0%
GTGGAAAAGCTTCAGGGAAA+GGG + chr5.3:47189742-47189761 MS.gene036000:CDS 45.0%
GTGTTCCAGACAAATTGAGC+GGG + chr5.3:47191921-47191940 MS.gene036000:intron 45.0%
GTTAACGGAAACCGTTTGGA+GGG + chr5.3:47190053-47190072 MS.gene036000:CDS 45.0%
GTTGCATGTACGAAGGTGAA+TGG + chr5.3:47189715-47189734 MS.gene036000:CDS 45.0%
TAACGGCGTTATATCTGGGA+AGG + chr5.3:47190016-47190035 MS.gene036000:CDS 45.0%
TACGAAGGTGAATGGAAACG+TGG + chr5.3:47189723-47189742 MS.gene036000:CDS 45.0%
TCCGATAGAAAACACGGGTT+CGG + chr5.3:47189879-47189898 MS.gene036000:CDS 45.0%
TCGAAGCAGAGTTGCAAGAT+AGG + chr5.3:47192196-47192215 MS.gene036000:CDS 45.0%
TCGTGCAACAGATAAACCTG+AGG + chr5.3:47191713-47191732 MS.gene036000:CDS 45.0%
TGGAAACGTGGAAAAGCTTC+AGG + chr5.3:47189735-47189754 MS.gene036000:CDS 45.0%
TGGAGCTCCGATAGAAAACA+CGG + chr5.3:47189873-47189892 MS.gene036000:CDS 45.0%
TTACGAGGGAGAGTTCAAGT+CGG + chr5.3:47189791-47189810 MS.gene036000:CDS 45.0%
TTAGAGAACTTTCCTCTCCC+GGG + chr5.3:47190990-47191009 MS.gene036000:CDS 45.0%
TTCTATGCCGGAAGTTTCTC+CGG + chr5.3:47189651-47189670 MS.gene036000:CDS 45.0%
TTCTGCTCTTGCTGGCATAT+TGG - chr5.3:47193021-47193040 None:intergenic 45.0%
TTGGGTTAACGGAAACCGTT+TGG + chr5.3:47190049-47190068 MS.gene036000:CDS 45.0%
TTTAAGCCGGCATGTGTTAC+AGG - chr5.3:47192533-47192552 None:intergenic 45.0%
! ACCGAACCCGTGTTTTCTAT+CGG - chr5.3:47189883-47189902 None:intergenic 45.0%
! CAAATGGCTGATTCCACCAT+TGG - chr5.3:47193078-47193097 None:intergenic 45.0%
! CATACCTTTTGGCCTCCAAT+AGG - chr5.3:47191524-47191543 None:intergenic 45.0%
! CTTTCCCCTTTTAGGCAATC+AGG + chr5.3:47192131-47192150 MS.gene036000:intron 45.0%
! GGGAAATTTTCATGGCCTTC+AGG + chr5.3:47189762-47189781 MS.gene036000:CDS 45.0%
! TCACCTTTTCTTCTACGCAC+TGG + chr5.3:47192039-47192058 MS.gene036000:CDS 45.0%
! TGGAAGCGTAACGTTCAAGA+TGG + chr5.3:47189942-47189961 MS.gene036000:CDS 45.0%
! TGGGAAGGGTTCGTTAGTTT+GGG + chr5.3:47190031-47190050 MS.gene036000:CDS 45.0%
!! AAAACACTTCCGCTTTTCCC+GGG - chr5.3:47191010-47191029 None:intergenic 45.0%
!! ATGGATCCGGGAAGTATCTA+TGG + chr5.3:47189685-47189704 MS.gene036000:CDS 45.0%
!! ATTTTGCCCCTGTGTTGATG+AGG + chr5.3:47190156-47190175 MS.gene036000:CDS 45.0%
!! CCGAAGAAGCACCTAAAAGT+TGG - chr5.3:47191420-47191439 None:intergenic 45.0%
!! CGGAAGTACTCTCTCAACAA+CGG - chr5.3:47189622-47189641 None:intergenic 45.0%
!! GAAAACACTTCCGCTTTTCC+CGG - chr5.3:47191011-47191030 None:intergenic 45.0%
!! GTTGAGAGAGTACTTCCGAA+CGG + chr5.3:47189624-47189643 MS.gene036000:CDS 45.0%
!! TCTTCTGAGGTTAAGAGACC+TGG + chr5.3:47190380-47190399 MS.gene036000:CDS 45.0%
AAACAAACCTTCTCCACCGG+CGG + chr5.3:47189515-47189534 MS.gene036000:CDS 50.0%
AAGTCAGGCACAGGGAAACA+TGG - chr5.3:47191588-47191607 None:intergenic 50.0%
ACCTTCGTACATGCAACCGT+CGG - chr5.3:47189712-47189731 None:intergenic 50.0%
AGAGTTCAAGTCGGGTCGAA+TGG + chr5.3:47189800-47189819 MS.gene036000:CDS 50.0%
AGTAACACCGACGAGCTTCA+CGG + chr5.3:47189578-47189597 MS.gene036000:CDS 50.0%
AGTCAGGCACAGGGAAACAT+GGG - chr5.3:47191587-47191606 None:intergenic 50.0%
ATCAAACCGCGGAGTTTCGA+TGG + chr5.3:47190690-47190709 MS.gene036000:CDS 50.0%
CCGAACGGAGATTTCTATGC+CGG + chr5.3:47189639-47189658 MS.gene036000:CDS 50.0%
CCGGCATAGAAATCTCCGTT+CGG - chr5.3:47189642-47189661 None:intergenic 50.0%
CGTGGAAAAGCTTCAGGGAA+AGG + chr5.3:47189741-47189760 MS.gene036000:CDS 50.0%
CTGGGAAGGGTTCGTTAGTT+TGG + chr5.3:47190030-47190049 MS.gene036000:CDS 50.0%
GAAACCGTTTGGAGGGTTTG+TGG + chr5.3:47190060-47190079 MS.gene036000:CDS 50.0%
GAAGAGCAACATTCCTGAGC+CGG + chr5.3:47189485-47189504 MS.gene036000:CDS 50.0%
GAATCCTTATAGCAGCGGAG+AGG + chr5.3:47193097-47193116 MS.gene036000:CDS 50.0%
GGAACATTCGTTGGATCCGA+CGG + chr5.3:47189831-47189850 MS.gene036000:CDS 50.0%
GGAGCTCCGATAGAAAACAC+GGG + chr5.3:47189874-47189893 MS.gene036000:CDS 50.0%
GGCGTAACGGCGTTATATCT+GGG + chr5.3:47190012-47190031 MS.gene036000:CDS 50.0%
GGTCAGAAACGTTACGCGAA+CGG + chr5.3:47189900-47189919 MS.gene036000:CDS 50.0%
GGTTAACGGAAACCGTTTGG+AGG + chr5.3:47190052-47190071 MS.gene036000:CDS 50.0%
GTCGGTCCATAGATACTTCC+CGG - chr5.3:47189694-47189713 None:intergenic 50.0%
GTGTAGATACACGGTTGGGA+AGG + chr5.3:47190568-47190587 MS.gene036000:intron 50.0%
TAAGCCTCTCCGCTGCTATA+AGG - chr5.3:47193104-47193123 None:intergenic 50.0%
TACGAGGGAGAGTTCAAGTC+GGG + chr5.3:47189792-47189811 MS.gene036000:CDS 50.0%
TACGTTGCCGGAGAAACTTC+CGG - chr5.3:47189661-47189680 None:intergenic 50.0%
TCGGGTCGAATGGAAGGATT+CGG + chr5.3:47189810-47189829 MS.gene036000:CDS 50.0%
TCTCCCACAAACCCTCCAAA+CGG - chr5.3:47190067-47190086 None:intergenic 50.0%
TGAGCGGGATTGTGAGTTCT+TGG + chr5.3:47191936-47191955 MS.gene036000:CDS 50.0%
TGGACAAGGTTTCCGAGTGA+AGG + chr5.3:47190647-47190666 MS.gene036000:CDS 50.0%
TGGCGTAACGGCGTTATATC+TGG + chr5.3:47190011-47190030 MS.gene036000:CDS 50.0%
TGGGAATCTGAAGGTGAAGC+TGG + chr5.3:47190254-47190273 MS.gene036000:CDS 50.0%
TGGGAGAATGGTGTTCCGAA+AGG + chr5.3:47190080-47190099 MS.gene036000:CDS 50.0%
TGTAGGCCTGTAACACATGC+CGG + chr5.3:47192524-47192543 MS.gene036000:intron 50.0%
TGTGGGACATATGCAAGCTG+TGG + chr5.3:47192671-47192690 MS.gene036000:intron 50.0%
TTCAAGTCGGGTCGAATGGA+AGG + chr5.3:47189804-47189823 MS.gene036000:CDS 50.0%
TTCTACCTCCGCCTTGTGAA+CGG - chr5.3:47189557-47189576 None:intergenic 50.0%
TTGATGAGGCGGGGTAATCT+TGG - chr5.3:47190675-47190694 None:intergenic 50.0%
TTGGAGGGTTTGTGGGAGAA+TGG + chr5.3:47190068-47190087 MS.gene036000:CDS 50.0%
! CAGATCAAGGTCTTTGAGGG+TGG - chr5.3:47191757-47191776 None:intergenic 50.0%
! GGGGTGTTTCCTGAATCAGT+TGG + chr5.3:47192360-47192379 MS.gene036000:intron 50.0%
! TTGTTTTCCTTCTCCGGCTC+AGG - chr5.3:47189501-47189520 None:intergenic 50.0%
!! GGGAAGTATCTATGGACCGA+CGG + chr5.3:47189693-47189712 MS.gene036000:CDS 50.0%
AACTCCGCGGTTTGATGAGG+CGG - chr5.3:47190686-47190705 None:intergenic 55.0%
ACCGACGGTTGCATGTACGA+AGG + chr5.3:47189708-47189727 MS.gene036000:CDS 55.0%
AGCTTCACGGTGGTTTCCGA+TGG + chr5.3:47189591-47189610 MS.gene036000:CDS 55.0%
CAACATTCCTGAGCCGGAGA+AGG + chr5.3:47189491-47189510 MS.gene036000:CDS 55.0%
CAAGAGCAGAACGGTTGGCA+AGG + chr5.3:47193030-47193049 MS.gene036000:CDS 55.0%
CGAAACTCCGCGGTTTGATG+AGG - chr5.3:47190689-47190708 None:intergenic 55.0%
CTTCTTCCAGCAATCACCGC+CGG - chr5.3:47189534-47189553 None:intergenic 55.0%
CTTTCCTCTCCCGGGAAAAG+CGG + chr5.3:47190998-47191017 MS.gene036000:CDS 55.0%
GAAACCACCGTGAAGCTCGT+CGG - chr5.3:47189588-47189607 None:intergenic 55.0%
GCAACGTACCGAATGGATCC+GGG + chr5.3:47189673-47189692 MS.gene036000:CDS 55.0%
GCGATACATATCGCGGGTCA+TGG + chr5.3:47189853-47189872 MS.gene036000:CDS 55.0%
GCTGGAAGAAGCCGTTCACA+AGG + chr5.3:47189543-47189562 MS.gene036000:CDS 55.0%
GGAAGAAGCCGTTCACAAGG+CGG + chr5.3:47189546-47189565 MS.gene036000:CDS 55.0%
GGATCCATTCGGTACGTTGC+CGG - chr5.3:47189673-47189692 None:intergenic 55.0%
GGCAACGTACCGAATGGATC+CGG + chr5.3:47189672-47189691 MS.gene036000:CDS 55.0%
TCCGACGGCGATACATATCG+CGG + chr5.3:47189846-47189865 MS.gene036000:CDS 55.0%
TTCTCCGGCAACGTACCGAA+TGG + chr5.3:47189666-47189685 MS.gene036000:CDS 55.0%
AACACCGACGAGCTTCACGG+TGG + chr5.3:47189581-47189600 MS.gene036000:CDS 60.0%
ACTCCGCGGTTTGATGAGGC+GGG - chr5.3:47190685-47190704 None:intergenic 60.0%
AGAAGCCGTTCACAAGGCGG+AGG + chr5.3:47189549-47189568 MS.gene036000:CDS 60.0%
CCCGCGATATGTATCGCCGT+CGG - chr5.3:47189850-47189869 None:intergenic 60.0%
CCGACGGCGATACATATCGC+GGG + chr5.3:47189847-47189866 MS.gene036000:CDS 60.0%
CCTTCAGGCGCGACTTACGA+GGG + chr5.3:47189777-47189796 MS.gene036000:CDS 60.0%
GAGCAGAACGGTTGGCAAGG+AGG + chr5.3:47193033-47193052 MS.gene036000:CDS 60.0%
GCCAACCGTTCTGCTCTTGC+TGG - chr5.3:47193029-47193048 None:intergenic 60.0%
GCCAGCAAGAGCAGAACGGT+TGG + chr5.3:47193025-47193044 MS.gene036000:CDS 60.0%
TACCCCGCCTCATCAAACCG+CGG + chr5.3:47190679-47190698 MS.gene036000:CDS 60.0%
!! ACTTCCGCTTTTCCCGGGAG+AGG - chr5.3:47191005-47191024 None:intergenic 60.0%
CCCTCGTAAGTCGCGCCTGA+AGG - chr5.3:47189780-47189799 None:intergenic 65.0%
CTCCGCGGTTTGATGAGGCG+GGG - chr5.3:47190684-47190703 None:intergenic 65.0%
CTTCCAGCAATCACCGCCGG+TGG - chr5.3:47189531-47189550 None:intergenic 65.0%
GCAATCACCGCCGGTGGAGA+AGG - chr5.3:47189525-47189544 None:intergenic 65.0%
GCCTTCAGGCGCGACTTACG+AGG + chr5.3:47189776-47189795 MS.gene036000:CDS 65.0%
TCTCCACCGGCGGTGATTGC+TGG + chr5.3:47189525-47189544 MS.gene036000:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 47189435 47193494 47189435 ID=MS.gene036000
chr5.3 mRNA 47189435 47193494 47189435 ID=MS.gene036000.t1;Parent=MS.gene036000
chr5.3 exon 47189435 47190465 47189435 ID=MS.gene036000.t1.exon1;Parent=MS.gene036000.t1
chr5.3 CDS 47189435 47190465 47189435 ID=cds.MS.gene036000.t1;Parent=MS.gene036000.t1
chr5.3 exon 47190574 47190738 47190574 ID=MS.gene036000.t1.exon2;Parent=MS.gene036000.t1
chr5.3 CDS 47190574 47190738 47190574 ID=cds.MS.gene036000.t1;Parent=MS.gene036000.t1
chr5.3 exon 47190922 47191087 47190922 ID=MS.gene036000.t1.exon3;Parent=MS.gene036000.t1
chr5.3 CDS 47190922 47191087 47190922 ID=cds.MS.gene036000.t1;Parent=MS.gene036000.t1
chr5.3 exon 47191428 47191538 47191428 ID=MS.gene036000.t1.exon4;Parent=MS.gene036000.t1
chr5.3 CDS 47191428 47191538 47191428 ID=cds.MS.gene036000.t1;Parent=MS.gene036000.t1
chr5.3 exon 47191630 47191823 47191630 ID=MS.gene036000.t1.exon5;Parent=MS.gene036000.t1
chr5.3 CDS 47191630 47191823 47191630 ID=cds.MS.gene036000.t1;Parent=MS.gene036000.t1
chr5.3 exon 47191930 47192060 47191930 ID=MS.gene036000.t1.exon6;Parent=MS.gene036000.t1
chr5.3 CDS 47191930 47192060 47191930 ID=cds.MS.gene036000.t1;Parent=MS.gene036000.t1
chr5.3 exon 47192145 47192238 47192145 ID=MS.gene036000.t1.exon7;Parent=MS.gene036000.t1
chr5.3 CDS 47192145 47192238 47192145 ID=cds.MS.gene036000.t1;Parent=MS.gene036000.t1
chr5.3 exon 47192995 47193300 47192995 ID=MS.gene036000.t1.exon8;Parent=MS.gene036000.t1
chr5.3 CDS 47192995 47193300 47192995 ID=cds.MS.gene036000.t1;Parent=MS.gene036000.t1
chr5.3 exon 47193353 47193494 47193353 ID=MS.gene036000.t1.exon9;Parent=MS.gene036000.t1
chr5.3 CDS 47193353 47193494 47193353 ID=cds.MS.gene036000.t1;Parent=MS.gene036000.t1
Gene Sequence

>MS.gene036000

ATGAGTGATACAGTGGTGAACGATGAAGTTGTTGAGGTTGTTAGTTCAACGAAGAGCAACATTCCTGAGCCGGAGAAGGAAAACAAACCTTCTCCACCGGCGGTGATTGCTGGAAGAAGCCGTTCACAAGGCGGAGGTAGAAGAGTAACACCGACGAGCTTCACGGTGGTTTCCGATGGTAGATCCGTTGTTGAGAGAGTACTTCCGAACGGAGATTTCTATGCCGGAAGTTTCTCCGGCAACGTACCGAATGGATCCGGGAAGTATCTATGGACCGACGGTTGCATGTACGAAGGTGAATGGAAACGTGGAAAAGCTTCAGGGAAAGGGAAATTTTCATGGCCTTCAGGCGCGACTTACGAGGGAGAGTTCAAGTCGGGTCGAATGGAAGGATTCGGAACATTCGTTGGATCCGACGGCGATACATATCGCGGGTCATGGAGCTCCGATAGAAAACACGGGTTCGGTCAGAAACGTTACGCGAACGGTGATTTATACGAAGGGTGGTGGAAGCGTAACGTTCAAGATGGTCAAGGACGTTACGTTTGGAAGAATGGGAATGAGTATGTTGGTGAATGGCGTAACGGCGTTATATCTGGGAAGGGTTCGTTAGTTTGGGTTAACGGAAACCGTTTGGAGGGTTTGTGGGAGAATGGTGTTCCGAAAGGACAAGGTGTTATCAAGATTCAACATGGTTTTGGTGGGTTTGTTTGGAATGACAATTTTGCCCCTGTGTTGATGAGGAAACGTTCTTCTGTTGATACTACTGTTAGTGGTAGAGGGAGTTTGAATGAGAAGAATTTTCCTAGGATTTGTATTTGGGAATCTGAAGGTGAAGCTGGTGATATTACTTGTGATATTGTTGATAATGTCGAGGCTTCTATGTTTTATCGCGATGGAACGTGTTCCGATCCTGATGAGTTTCGAAAACATCCTTGTTGTTTCTCTTCTGAGGTTAAGAGACCTGGTCAAACTATTTCTAAAGGGCATAAGAATTATGAGTTGATGCTTAATTTGCAATTGGGGATTAGGTAAATAAGAAACCCTTGTTTTGTTATTCTTATTGATTGTTATTGTTATTGTTGTTTTTGTGTTTGAGTTTGTCGTTTAATTAATTTAACTTGTCATGTGATGTGTAGATACACGGTTGGGAAGGAAGCGTCGAAGTTGCGAGAGCTTAAACCTAGTGATTTTGATCCTAAAGAGAAGTTTTGGACAAGGTTTCCGAGTGAAGGATCCAAGATTACCCCGCCTCATCAAACCGCGGAGTTTCGATGGAAAGATTACTGTCCGGTTGTTTTTAGGTATAACTCTTTTTGTTGTTGAATTTGTATACATGTTTGTTTGTTTTAATGTTGATGTTTTGGTGAGGTGACCTGTGTTGAAATTAATTCGGGTGTTTTGGATGATTTTTGGATTGGAGTTGTTTAGCGTGTTGAAATTGTGTCGTGCTTTGATGTTGACTTTATTTTGCTTTGATTCTTCAGACATTTGAGGAAGCTGTTTCAGGTTGATCCTGCTGATTATATGTTGGCTATATGTGGGGATGATGCTCTTAGAGAACTTTCCTCTCCCGGGAAAAGCGGAAGTGTTTTCTACTTGACCCAAGATGACAGATTCATGATTAAGACAGTGAAGAAATCTGAAGTCAAGGTTAGATACATGTGTTGTATAGACTTTTGTTGAATTTTGTGTCTTGTTGAATTTTACACGGGTTTGGGTTTGACGATATAATGCTAAGAACAAAACATACCATGTGGAAAAATGATTATTTATCGTTGTTTTTTTCTTCTTCCAGTCAACTGTTAGTCAAATCGTTAGTAGACCAGACAACTTAGGTTTTGTAAGGAGGTCTGGTCTATCTTTGTCGCTATTCGAATATCCCGGTTAAACGTAGATTCTTACCTTTTATAACGCAAGTTACGCAATTACAAGTCTTTGGCTCGATTGTACTCGCATTGATGATGTGTAATTTCTGACTTCCAACTTTTAGGTGCTTCTTCGGATGCTTCGAAGCTATTACAAACACGTGTCCAAATATGAGAATTCACTGGTGACAAAATTCTTTGGGGTACATTGTGTGAAACCTATTGGAGGCCAAAAGGTATGGATCGATAGATATATTATTGTAGCTGTATGGAACGTTTGTCCCATGTTTCCCTGTGCCTGACTTTTCATTGTTATTGGAAAATCAGATCCGGTTTATTGTGATGGGCAATCTTTTCTGCTCTGAATATCCAATTCATAGACGATTTGATTTGAAAGGATCTTCACATGGTCGTGCAACAGATAAACCTGAGGATGAGATTGATGAAACAACCACCCTCAAAGACCTTGATCTGAACTATGTGTTTCGTGTACAACGAAATTGGTACCAGGATCTTATTAAGTAAGTTTTTGTGTTTGTTATATTTTTTTTCTTTCTTTCTAGGCTGCATCTTACCAGTGAATCGTTATAGAATACGTATCTGACAAGTTATGGTATTGTGTTCCAGACAAATTGAGCGGGATTGTGAGTTCTTGGAAAACGAGAAAATTATGGACTACAGTCTTTTGGTTGGCCTTCATTTTCGTGATGACAACACATATGACAAAATGGGGTTGTCACCTTTTCTTCTACGCACTGGTATTGATCTAACACTCACTATAGAGCATATGGTTATGGTTTATGTTATGTAAATATTCAAAGCGATATTCTTTCCCCTTTTAGGCAATCAGGATTCTTATCATACTGAGAAGTTCATGCGTGGTTATCGCTTTCTCGAAGCAGAGTTGCAAGATAGGGATCGAGTTAAATCTGGAAGGTTTGTCATGATCTGTTCTAGTTCCTTAAAATTAGTGTAGATGGATATTTTTTAGATTTAATTTATCAAATGGCTGGGTTTTTAAATGACTTGCAACCAAAGCTAAATTGGAAAAGCTTCAGGGGTGTTTCCTGAATCAGTTGGAATCTTTTATTAATCTCAGTAAAAATGAGAATTGTTCGTAATCTTGAGATATATTAGGGCTTGTGCTGTTGGTTGTTGTGTTATAATACAAATATTATATATTATATTGTTATCTCTTGAAAATATCAGAAAGGAATAAATTGTAGGCCTGTAACACATGCCGGCTTAAATTCAAATTCTTTATTGGCATTAAAATTGGTTGATAATAATAATTCATGATAATAATTGTAAGTAGTTTGCATTATGTTGGCAAATTAAGTGGGTATAGTTTTGCAGGAAATAGTTGTTTGTGGGACATATGCAAGCTGTGGTCTTAATTCATTAGATTTAATTTGATTTCTAATATATTTTTGGCCTGACAATAAATTCATTGATTGCAATCATGTTTTATTCTTACCTTCTTTGCATTCATGTTCTTTCTGAATTTTTCCCATATACCATATACAGACAACAATTTCAGCTTTCTGTTACTCTGTGTGTGTGGTTTGAAGATTCTGAATTTGTTACTATTTTGTTACACTCCTAAACTGTTAAAGATTGTTGATATTTTCTATATGAATTCATATTTGCCAATTTCGTGACATGTATTAAGTAGGATTCTTCTTTCTTCAGAAAATCATTAATCAGGCTAGGAGCCAATATGCCAGCAAGAGCAGAACGGTTGGCAAGGAGGAGTGATTTTGATCAATACACCAATGGTGGAATCAGCCATTTGAATCCTTATAGCAGCGGAGAGGCTTATGATTGCGTTCTATATTTTGGGGTTATCGATATTTTACAGGACTATGATATCAGCAAAAAGCTTGAGCATGCTTACAAGTCTTTGCAAGTTGACTCTACTTCAATTTCTGCTGTTGATCCAAAGCTATACTCAAAAAGGTTTCGAGATTTTGTTGGAAGAATATTCATTGAAGATTGGTAAGCAGTGACCAGTTAGTACAAAATGAGGATAAAATATCTTCTCCTGAAGGTTAAAAAATGCCATGAATCATGATGATCACAAAAATCCAGGAAAAATATTTGGAAGTTTGAAACCCACTTGCAAAAGAGGGACCTTAGACTTTACTGTTCATCAGATCACTGTAAGTGGGGCCTCAAAGAATCTCACTTGA
Protein sequence

>MS.gene036000.t1

MSDTVVNDEVVEVVSSTKSNIPEPEKENKPSPPAVIAGRSRSQGGGRRVTPTSFTVVSDGRSVVERVLPNGDFYAGSFSGNVPNGSGKYLWTDGCMYEGEWKRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFVGSDGDTYRGSWSSDRKHGFGQKRYANGDLYEGWWKRNVQDGQGRYVWKNGNEYVGEWRNGVISGKGSLVWVNGNRLEGLWENGVPKGQGVIKIQHGFGGFVWNDNFAPVLMRKRSSVDTTVSGRGSLNEKNFPRICIWESEGEAGDITCDIVDNVEASMFYRDGTCSDPDEFRKHPCCFSSEVKRPGQTISKGHKNYELMLNLQLGIRYTVGKEASKLRELKPSDFDPKEKFWTRFPSEGSKITPPHQTAEFRWKDYCPVVFRHLRKLFQVDPADYMLAICGDDALRELSSPGKSGSVFYLTQDDRFMIKTVKKSEVKVLLRMLRSYYKHVSKYENSLVTKFFGVHCVKPIGGQKIRFIVMGNLFCSEYPIHRRFDLKGSSHGRATDKPEDEIDETTTLKDLDLNYVFRVQRNWYQDLIKQIERDCEFLENEKIMDYSLLVGLHFRDDNTYDKMGLSPFLLRTGNQDSYHTEKFMRGYRFLEAELQDRDRVKSGRKSLIRLGANMPARAERLARRSDFDQYTNGGISHLNPYSSGEAYDCVLYFGVIDILQDYDISKKLEHAYKSLQVDSTSISAVDPKLYSKRFRDFVGRIFIEDWLKNAMNHDDHKNPGKIFGSLKPTCKRGTLDFTVHQITVSGASKNLT