AlfalfaGEDB | MS.gene47906

M. sativa cultivar XinJiangDaYe / MS.gene47906

KEGG: K00889
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016307 GO:0016308 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019637 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF01504.21 PF02493.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47906.t1	XP_013446690.2	97.4	766	20	0	1	766	1	766	0.00E+00	1172.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47906.t1	Q9SUI2	64.1	569	194	5	196	764	194	752	4.0e-195	682.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47906.t1	A0A072TU52	97.4	766	20	0	1	766	1	766	0.0e+00	1172.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene47906	0.806216	9.16E-50	-1.69E-46
MS.gene049808	MS.gene47906	0.806637	7.47E-50	-1.69E-46
MS.gene050689	MS.gene47906	0.802629	5.12E-49	-1.69E-46
MS.gene052611	MS.gene47906	0.848429	6.16E-60	-1.69E-46
MS.gene052863	MS.gene47906	0.821354	4.22E-53	-1.69E-46
MS.gene053008	MS.gene47906	0.828859	7.11E-55	-1.69E-46
MS.gene055818	MS.gene47906	0.816583	5.13E-52	-1.69E-46
MS.gene056542	MS.gene47906	0.807107	5.94E-50	-1.69E-46
MS.gene056543	MS.gene47906	0.809845	1.55E-50	-1.69E-46
MS.gene056545	MS.gene47906	0.806477	8.07E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene47906	MS.gene036000	PPI
MS.gene47906	MS.gene037992	PPI
MS.gene47906	MS.gene24055	PPI
MS.gene47906	MS.gene058993	PPI
MS.gene47906	MS.gene053746	PPI
MS.gene47906	MS.gene94097	PPI
MS.gene47906	MS.gene73925	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47906.t1	MTR_8g088930	96.997	766	23	0	1	766	1	766	0.0	1544
MS.gene47906.t1	MTR_8g088930	96.871	767	23	1	1	766	1	767	0.0	1540
MS.gene47906.t1	MTR_8g088930	96.880	673	21	0	1	673	1	673	0.0	1358
MS.gene47906.t1	MTR_8g088930	96.736	674	21	1	1	673	1	674	0.0	1354
MS.gene47906.t1	MTR_1g062740	50.769	780	355	6	6	763	44	816	0.0	765
MS.gene47906.t1	MTR_1g050740	39.069	773	395	14	9	759	57	775	0.0	543
MS.gene47906.t1	MTR_1g050740	37.815	119	74	0	76	194	55	173	4.49e-18	89.4
MS.gene47906.t1	MTR_3g073100	38.846	780	367	19	1	764	45	730	2.52e-171	511
MS.gene47906.t1	MTR_7g089950	39.272	769	398	16	8	757	66	784	9.47e-170	509
MS.gene47906.t1	MTR_8g039100	38.896	779	390	16	2	764	41	749	4.27e-169	506

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene47906.t1	AT1G10900	64.032	759	263	5	6	764	4	752	987
MS.gene47906.t1	AT1G10900	64.032	759	263	5	6	764	4	752	987
MS.gene47906.t1	AT1G10900	64.032	759	263	5	6	764	4	752	987
MS.gene47906.t1	AT1G60890	61.935	775	268	7	6	764	4	767	971
MS.gene47906.t1	AT1G60890	62.047	772	266	7	9	764	19	779	970
MS.gene47906.t1	AT3G09920	49.871	774	365	12	6	764	46	811	739
MS.gene47906.t1	AT3G09920	49.871	774	365	12	6	764	46	811	739
MS.gene47906.t1	AT3G09920	49.871	774	365	12	6	764	46	811	739
MS.gene47906.t1	AT3G09920	49.871	774	365	12	6	764	46	811	739
MS.gene47906.t1	AT2G41210	40.808	767	372	15	9	759	66	766	558

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Find 171 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAAAATAGATGGAA+GGG	0.584921	4.1:-11691646	MS.gene47906:CDS
AAAGGAACATTCTATCCTTC+TGG	0.363846	4.1:-11691489	MS.gene47906:CDS
AAAGGCCTAAAGGACGGAAA+AGG	0.524731	4.1:-11691507	MS.gene47906:CDS
AAAGGGAAAATAGATGGAAG+GGG	0.596052	4.1:-11691645	MS.gene47906:CDS
AAATACTCACCTTGCAGTAC+CGG	0.481918	4.1:+11688323	None:intergenic
AACAACCATCTCTAAAGAAA+TGG	0.425820	4.1:-11691461	MS.gene47906:CDS
AACACTGAGAGGTGGGAAAA+AGG	0.313597	4.1:-11690144	MS.gene47906:intron
AACATGGAGTAAAGGCCTAA+AGG	0.583252	4.1:-11691517	MS.gene47906:CDS
AACGGCTGTGTTTACACTGG+TGG	0.584384	4.1:-11691813	MS.gene47906:CDS
AAGGATGTACTTTCCTAAGG+AGG	0.552053	4.1:-11690759	MS.gene47906:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGGGAAAATAGATGGA+AGG	-	chr4.1:11688473-11688492	MS.gene47906:CDS	30.0%
AAAAGGGAAAATAGATGGAA+GGG	-	chr4.1:11688474-11688493	MS.gene47906:CDS	30.0%
AAGAAGTAAAGACGGATATT+AGG	+	chr4.1:11690007-11690026	None:intergenic	30.0%
AATTGATTACAGTCTTCTGT+TGG	-	chr4.1:11691398-11691417	MS.gene47906:CDS	30.0%
ATCTCTTATTGACAGTATCA+TGG	-	chr4.1:11690953-11690972	MS.gene47906:intron	30.0%
ATTCTCATTGCTATGAAGAT+TGG	+	chr4.1:11688689-11688708	None:intergenic	30.0%
ATTGATTACAGTCTTCTGTT+GGG	-	chr4.1:11691399-11691418	MS.gene47906:CDS	30.0%
ATTTGTGAGGGATATCAATA+AGG	+	chr4.1:11690718-11690737	None:intergenic	30.0%
CAAGAAGAAAGAAGTAAAGA+CGG	+	chr4.1:11690015-11690034	None:intergenic	30.0%
CAATATATAATCACTAGGCT+TGG	+	chr4.1:11691568-11691587	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	11687920	11692222	11687920	ID=MS.gene47906
chr4.1	mRNA	11687920	11692222	11687920	ID=MS.gene47906.t1;Parent=MS.gene47906
chr4.1	exon	11692206	11692222	11692206	ID=MS.gene47906.t1.exon1;Parent=MS.gene47906.t1
chr4.1	CDS	11692206	11692222	11692206	ID=cds.MS.gene47906.t1;Parent=MS.gene47906.t1
chr4.1	exon	11691021	11692064	11691021	ID=MS.gene47906.t1.exon2;Parent=MS.gene47906.t1
chr4.1	CDS	11691021	11692064	11691021	ID=cds.MS.gene47906.t1;Parent=MS.gene47906.t1
chr4.1	exon	11690689	11690856	11690689	ID=MS.gene47906.t1.exon3;Parent=MS.gene47906.t1
chr4.1	CDS	11690689	11690856	11690689	ID=cds.MS.gene47906.t1;Parent=MS.gene47906.t1
chr4.1	exon	11690388	11690553	11690388	ID=MS.gene47906.t1.exon4;Parent=MS.gene47906.t1
chr4.1	CDS	11690388	11690553	11690388	ID=cds.MS.gene47906.t1;Parent=MS.gene47906.t1
chr4.1	exon	11690145	11690255	11690145	ID=MS.gene47906.t1.exon5;Parent=MS.gene47906.t1
chr4.1	CDS	11690145	11690255	11690145	ID=cds.MS.gene47906.t1;Parent=MS.gene47906.t1
chr4.1	exon	11689877	11690064	11689877	ID=MS.gene47906.t1.exon6;Parent=MS.gene47906.t1
chr4.1	CDS	11689877	11690064	11689877	ID=cds.MS.gene47906.t1;Parent=MS.gene47906.t1
chr4.1	exon	11688632	11688786	11688632	ID=MS.gene47906.t1.exon7;Parent=MS.gene47906.t1
chr4.1	CDS	11688632	11688786	11688632	ID=cds.MS.gene47906.t1;Parent=MS.gene47906.t1
chr4.1	exon	11688333	11688501	11688333	ID=MS.gene47906.t1.exon8;Parent=MS.gene47906.t1
chr4.1	CDS	11688333	11688501	11688333	ID=cds.MS.gene47906.t1;Parent=MS.gene47906.t1
chr4.1	exon	11687920	11688202	11687920	ID=MS.gene47906.t1.exon9;Parent=MS.gene47906.t1
chr4.1	CDS	11687920	11688202	11687920	ID=cds.MS.gene47906.t1;Parent=MS.gene47906.t1

Gene Sequence

>MS.gene47906

ATGGAGGACAATGGAAGGTAATGTTCATAGAAACTACTACTCTTTCCTATTCATTCTCTTTTGTTTTGTATTTTGTTTTGTTTTGTTTTGACTCTGTGTATTCTGTTCTGTATGCAAGTAGCAATGTATTGTTATTTAACTGTTTCTTGTTAATGTAGGTTTGAAGAGAAGTCCTTTACAAATGGTGATGTCTACATTGGTAAATTCAAGGGTATACTTCCCCACGGCAACGGGAAGTACACATGGTCAGATGGATCGGTATATGAAGGGGATTGGATAGATGGAAAAATGACAGGGAAAGGGATACTTATATGGCCATCAGGAGCAAAGTACGAGGGCGAATTCTCCGGGAATTATCTTCACGGTCACGGAACATTCACAAAATCGAACGGCTGTGTTTACACTGGTGGATGGAGGATGAATGCTCATCACGGGATTGGACGAAAAGTGTATTCCAATTCAGATGTTTACGAAGGTTTATGGAAAGAAGGAATTCGCGAAGGCAGCGGAAAATTTACTTGGAATGATGGAAGTATCTATATTGGAAATTGGAAAAAAGGGAAAATAGATGGAAGGGGGATTATGAAGTGGTTTAACGGTGATGTTTTTGATGGTTGTTGGTTAAATGGACTTAGACAAGGATCTGGAGTTTATAGATTTTCAGATGGAGGACTTTATATTGGAACATGGAGTAAAGGCCTAAAGGACGGAAAAGGAACATTCTATCCTTCTGGTAGCAAACAACCATCTCTAAAGAAATGGTGTACCAATCTTCATAGCAATGAGAATTGTAAGGTTCCAAATTCAAGATTTAACCGTAGTCTCTCTGAAAAAGCTCGAGCCAGTGGTAGATCAAAAAGTTCACGTCATTTATCTCAAAGTACTTCATTGTTGGATGAGAATTGTGTGATTCAAAACCCTGCTGACGATTGCATATGTCGTGATTCCTCATCCGCGTTATCGCAGACCTCTAATGAAGGTCAATCTGAGGTATCTGGTATGAGTAATATGGTTTTCGAAAGGGAATATATGCAAGGAGTTCTAATTGTGGAGAGACTTCGTGAGTATTCAGAAATATCGCATAATAAGAACAAAAAGGAAAGTAAATTTAGTATGAAGCAAGTAAAGAAGAGTTCAATTATAGGCACTTTCCAACACCGCCGAAGCTATTATCTGAAGCTTAATTTGCAGCTTGGCATCAGGTAAATTATTTGATCTCTAATAATATTTTCGAAAAACATAACTAGTCTTCATGATTGCTAGTATTATCAGCATTCTTTCAAATGTTCTACACTTGAATATTTATTTATTTGGTATTATGTTTTATACGAAGCTTTGATTTTAATTTTTTTTGCTCAATTCTCAGGTACACTGTAGGAAAAATTACACCGGTTCCTGCACGCGAAGTTCGGTCGTCTGATTTTGGAGAAAGAGCTAGGATAAGGATGTACTTTCCTAAGGAGGGTTCACAATTGACTCCTCCACACTGTTCTGTAGACTTCTACTGGAAAGATTATTGCCCTATGGTCTTCAGGTATTCATTATCAGAATAACATGTATATAGGTTCTTGATATAATATGATTTTATGATTATTGTGGCATATTAGAGTTCTTAGTCAGAGTTATGATTATAAGCACATATTCTTAATGTGATTTCATATATTTCCAGGAATTTGAGAGAAATGTTCAAATTGGACGCGGCCGAGTACATGATGTCCATTTGTGGTGATTGTGCTCTAAAGGACATATCTTCAGCTGGAAAAAGTGGCAGCATATTCTTTATTTCTCAAGATGACAAATTTGTGATCAAGACACTAAAAAAATATGAGCTAAAGGTTTGTAGTCACCTCTTTTGCTTGATGGACCATATTAACTTTTAATTAAGTTATTTTGATTTGAATTCATCAAATACATGAATCCTGACTTCTTAAGTACTTAATTACGTGCATACATTCCTCTTGTTATAGGTTCTGCTCAATATGCTTCCTAAATACTACCATCATGTAGGAAGTTATGAAAATACTCTTATTACAAAATTCTTCGGGATCCATCGAATAACACTGAGAGGTGGGAAAAAGGTATTACCTAATATCCGTCTTTACTTCTTTCTTCTTGTTAATTGGTTTAACCATAAATACTTTGTTGTTTTCTTCGTTAGGTGCGGTTTGTTGTCATGGGAAATATGTTTTGCACAGAACTTCATATCCATCGTCGTTACGATCTGAAGGGATCTTCTCAAGGAAGATATACAAGCCAAGATAAAATTAATAGCAATACAACATTGAAAGATCTTGATCTAAAATACGAATTTCATATGGATAAAAAGTTGCGAGAATCGTTATTCAAGTAAGTTCCTACTTTATAAGAGTAACTTTTATAGTAAGCAGTACTTGTTGACAAATTTCTAGAAATGTAGCAATTTTGCTCTTCTAGGTAGAACAAATATTTCCTATTTCATGATTATGTTAGTATTTTATTTCCCATAGGAAATGCTTTACTACTTTGTTATCGTAAGTACTATGGCGTCTAACTGTAATACAATTTTACTTTTTGGACGGACTAATAATACTGGCACAATATGGATCTGTCAGAATTTTCAGCTTTCTTGCTTTCGTTGGTAGGATTTCATCCTTAAATAAAACAAAAGATATTAGTGGCACCAATGAAACAAATATTTTTATTTCAATTCTAATTTCTATATTTTATATGTAATAATGGACAGATTTCTGTCTAAAAAAAAATAAAATACAATAATGGACATATTAGTAACAGAATCCCAGCGATGAATCGAAATACCTTATTGATATCCCTCACAAATTGATGCGGCTGGTAAAGAAGCGTCAATTTGCTGATGAGAAATTGATAGCGAGGTCGAGGTACAACCTTGGTTAAAATATCCACAAGCCGGGTTGCGAGGTGAATGAGGAAGAGAGATAACGTAATTGTCCAAAGCTTTACAAATAGAGAGACAATCAACCTCAATATGCTTCGTGCACTCATGAAAAAAGGATTATAGCAACTTGATTACGATGTATCTCTTATTGACAGTATCATGGTAGTAATAGGATGTATCTTTATTCACCGAAAATTAAACAGATGATTTTATGAAATATAAGTGTAAAGAAATATTGGATGATATCTATGTTGAATAACGCTCCTTGTTAGATCCTGCTATTGCAAATTTTAGCGAAAGTCATGAAAAGTTATGAGTTTCTTCATGTTTCTACATTGAAAAGATTTAATACGAAGACCACAATTTCAGATTTTGATAGTACTTGGCTTATTACATGAGATAATACTGATTTATGACTGTTAGCTATATTGTATATGCACAAAAATATTTATCATGACAATTCTGTAGAACTTCTCCTTGTCTGAAGGGAAAGTAATTTACCTGGTGGTTATGATATGACCTGACTTTATTTTTCTGGTTCAGGCAAATTTCTCTAGACTGCAAGTTCTTGGAATCTCAGCACATAATTGATTACAGTCTTCTGTTGGGATTGCATTTTAGAGCTCCAGAGAATCTAAAGGCGTTCGTCGAACCTCCTGGAGCAATACAGCGTCAGTATAGTTTACCTTCTGCAGATGGTTAGTATATCCTCTGATGCCAGTTATTTAGAATATGATATGAAAATTTTCTTCCCAAGCCTAGTGATTATATATTGATATCATTATTTTTTTTTCTAACGAACATATCGACTTGACTTACTTGCACCAGATTTACTCAAACAAGGGGAGCAGTTGATCATTCCGAAAGGCTTGTTGTTAGTTGCACATGAACCGAGCTTCGTCAACGCGACGCCTGGACCTCACATTAGAGGGAATACATTGAGAGCATACTCCATCGGTAACAAGGAAGTTGATCTTTTACTGCCCGGTACTGCAAGGTGAGTATTTTCTATAACATCAGTTTCTCTTGCCGCTCGCTATTACATTAGGAACTTAAGATCACTAAACTAGGATTGTAAATTTGTAATAATTGTATGATATATATAATAAATAATGAATGTTCCTCAGATTGCCGGTGCAATTAGGAGTAAACATGCCGGCTCAAGCTACTAGTTTGCTTCAAGAAGACAAGGTGGAAGAATCAGAAGTAGAGCTTTTCGAGGTTTATGATGTGGTACTCTACATGGGAATAATAGATATACTTCAGGAATACACTGTCAAAAAGAAACTTGAGCATGCCTACAAATCACTGCAGTTTGATCCTATGACTATATCAGTAACAGAACCTAAAATTTATGCTGAACGTTTCATCAATTTCATGGATAAAAAGGTATTCCCGGAAATACCGTGA

Protein sequence

>MS.gene47906.t1

MEDNGRFEEKSFTNGDVYIGKFKGILPHGNGKYTWSDGSVYEGDWIDGKMTGKGILIWPSGAKYEGEFSGNYLHGHGTFTKSNGCVYTGGWRMNAHHGIGRKVYSNSDVYEGLWKEGIREGSGKFTWNDGSIYIGNWKKGKIDGRGIMKWFNGDVFDGCWLNGLRQGSGVYRFSDGGLYIGTWSKGLKDGKGTFYPSGSKQPSLKKWCTNLHSNENCKVPNSRFNRSLSEKARASGRSKSSRHLSQSTSLLDENCVIQNPADDCICRDSSSALSQTSNEGQSEVSGMSNMVFEREYMQGVLIVERLREYSEISHNKNKKESKFSMKQVKKSSIIGTFQHRRSYYLKLNLQLGIRYTVGKITPVPAREVRSSDFGERARIRMYFPKEGSQLTPPHCSVDFYWKDYCPMVFRNLREMFKLDAAEYMMSICGDCALKDISSAGKSGSIFFISQDDKFVIKTLKKYELKVLLNMLPKYYHHVGSYENTLITKFFGIHRITLRGGKKVRFVVMGNMFCTELHIHRRYDLKGSSQGRYTSQDKINSNTTLKDLDLKYEFHMDKKLRESLFKQISLDCKFLESQHIIDYSLLLGLHFRAPENLKAFVEPPGAIQRQYSLPSADDLLKQGEQLIIPKGLLLVAHEPSFVNATPGPHIRGNTLRAYSIGNKEVDLLLPGTARLPVQLGVNMPAQATSLLQEDKVEESEVELFEVYDVVLYMGIIDILQEYTVKKKLEHAYKSLQFDPMTISVTEPKIYAERFINFMDKKVFPEIP