Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036062.t1 | XP_013467901.1 | 57.1 | 555 | 202 | 9 | 33 | 578 | 32 | 559 | 1.70E-157 | 566.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036062.t1 | Q9FLH8 | 66.5 | 322 | 102 | 1 | 262 | 577 | 13 | 334 | 7.2e-120 | 432.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036062.t1 | A0A072VKK1 | 57.1 | 555 | 202 | 9 | 33 | 578 | 32 | 559 | 1.3e-157 | 566.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036062 | MS.gene052011 | PPI |
| MS.gene032177 | MS.gene036062 | PPI |
| MS.gene98726 | MS.gene036062 | PPI |
| MS.gene28335 | MS.gene036062 | PPI |
| MS.gene056386 | MS.gene036062 | PPI |
| MS.gene036062 | MS.gene003877 | PPI |
| MS.gene85276 | MS.gene036062 | PPI |
| MS.gene46881 | MS.gene036062 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036062.t1 | MTR_1g057810 | 55.214 | 585 | 220 | 11 | 8 | 579 | 5 | 560 | 0.0 | 551 |
| MS.gene036062.t1 | MTR_1g101950 | 78.932 | 337 | 64 | 2 | 252 | 582 | 4 | 339 | 0.0 | 530 |
| MS.gene036062.t1 | MTR_1g069745 | 87.000 | 300 | 27 | 2 | 284 | 583 | 1 | 288 | 0.0 | 525 |
| MS.gene036062.t1 | MTR_1g105150 | 53.675 | 585 | 215 | 12 | 8 | 579 | 5 | 546 | 6.78e-180 | 520 |
| MS.gene036062.t1 | MTR_6g089480 | 76.667 | 300 | 70 | 0 | 281 | 580 | 9 | 308 | 1.02e-167 | 479 |
| MS.gene036062.t1 | MTR_1g069490 | 60.544 | 441 | 129 | 7 | 145 | 582 | 2 | 400 | 1.95e-167 | 482 |
| MS.gene036062.t1 | MTR_6g089480 | 76.981 | 265 | 61 | 0 | 281 | 545 | 9 | 273 | 1.17e-146 | 424 |
| MS.gene036062.t1 | MTR_6g089480 | 77.863 | 262 | 58 | 0 | 281 | 542 | 9 | 270 | 2.65e-146 | 423 |
| MS.gene036062.t1 | MTR_5g079460 | 64.286 | 336 | 111 | 3 | 252 | 579 | 45 | 379 | 4.68e-140 | 412 |
| MS.gene036062.t1 | MTR_4g067310 | 58.044 | 317 | 125 | 3 | 270 | 580 | 13 | 327 | 9.96e-122 | 363 |
| MS.gene036062.t1 | MTR_2g098950 | 57.143 | 315 | 127 | 3 | 272 | 580 | 14 | 326 | 1.92e-121 | 362 |
| MS.gene036062.t1 | MTR_1g076850 | 55.799 | 319 | 133 | 3 | 272 | 584 | 8 | 324 | 2.42e-119 | 357 |
| MS.gene036062.t1 | MTR_7g075860 | 57.143 | 315 | 127 | 2 | 272 | 578 | 41 | 355 | 2.53e-118 | 355 |
| MS.gene036062.t1 | MTR_1g054730 | 52.025 | 321 | 112 | 5 | 265 | 580 | 104 | 387 | 6.29e-91 | 286 |
| MS.gene036062.t1 | MTR_1g054730 | 48.315 | 89 | 29 | 4 | 32 | 117 | 84 | 158 | 4.38e-13 | 71.6 |
| MS.gene036062.t1 | MTR_0046s0180 | 77.000 | 100 | 23 | 0 | 481 | 580 | 10 | 109 | 2.48e-47 | 161 |
| MS.gene036062.t1 | MTR_8g096570 | 47.159 | 176 | 78 | 4 | 33 | 202 | 66 | 232 | 7.45e-42 | 161 |
| MS.gene036062.t1 | MTR_5g044990 | 30.719 | 306 | 185 | 7 | 292 | 575 | 250 | 550 | 2.34e-40 | 155 |
| MS.gene036062.t1 | MTR_4g019165 | 31.098 | 328 | 193 | 6 | 290 | 585 | 131 | 457 | 1.99e-39 | 150 |
| MS.gene036062.t1 | MTR_1g069480 | 54.386 | 114 | 43 | 6 | 67 | 177 | 3 | 110 | 2.00e-23 | 95.9 |
| MS.gene036062.t1 | MTR_0046s0210 | 37.179 | 156 | 82 | 6 | 178 | 320 | 1 | 153 | 7.81e-14 | 69.7 |
| MS.gene036062.t1 | MTR_1g071270 | 42.857 | 105 | 46 | 4 | 117 | 212 | 10 | 109 | 2.58e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036062.t1 | AT5G51830 | 66.460 | 322 | 102 | 1 | 262 | 577 | 13 | 334 | 3.53e-151 | 438 |
| MS.gene036062.t1 | AT5G51830 | 66.460 | 322 | 102 | 1 | 262 | 577 | 13 | 334 | 3.53e-151 | 438 |
| MS.gene036062.t1 | AT1G66430 | 64.526 | 327 | 109 | 2 | 257 | 577 | 50 | 375 | 9.63e-145 | 424 |
| MS.gene036062.t1 | AT2G31390 | 56.386 | 321 | 132 | 3 | 266 | 580 | 3 | 321 | 2.21e-120 | 359 |
| MS.gene036062.t1 | AT4G10260 | 59.091 | 308 | 118 | 3 | 272 | 573 | 6 | 311 | 3.59e-120 | 358 |
| MS.gene036062.t1 | AT1G06030 | 54.462 | 325 | 140 | 3 | 262 | 580 | 1 | 323 | 2.99e-119 | 356 |
| MS.gene036062.t1 | AT3G59480 | 54.890 | 317 | 135 | 3 | 267 | 577 | 5 | 319 | 7.88e-118 | 353 |
| MS.gene036062.t1 | AT1G06020 | 54.603 | 315 | 135 | 2 | 272 | 580 | 10 | 322 | 5.30e-115 | 346 |
| MS.gene036062.t1 | AT3G54090 | 32.622 | 328 | 187 | 7 | 290 | 585 | 141 | 466 | 2.94e-44 | 164 |
| MS.gene036062.t1 | AT1G50390 | 47.647 | 170 | 58 | 1 | 411 | 580 | 1 | 139 | 1.11e-41 | 147 |
| MS.gene036062.t1 | AT1G69200 | 29.123 | 285 | 180 | 6 | 296 | 560 | 250 | 532 | 3.64e-37 | 146 |
| MS.gene036062.t1 | AT5G63540 | 40.415 | 193 | 100 | 4 | 16 | 202 | 77 | 260 | 3.24e-32 | 132 |
| MS.gene036062.t1 | AT5G63540 | 40.415 | 193 | 100 | 4 | 16 | 202 | 77 | 260 | 3.51e-32 | 132 |
Find 142 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGGTCCCTTCATATTTC+AGG | 0.107336 | 1.4:-56595766 | MS.gene036062:intron |
| ACAATTAGAAGCTTCAAATT+AGG | 0.157098 | 1.4:+56592920 | None:intergenic |
| TGCAAACCCTCGTGGATTAA+AGG | 0.222703 | 1.4:-56595393 | MS.gene036062:intron |
| GGAACCATAATGGAATATTT+TGG | 0.235298 | 1.4:+56593317 | None:intergenic |
| AAAATTTACCTTTATGATAT+CGG | 0.267627 | 1.4:+56593134 | None:intergenic |
| CCTCAAAATACTAGAGTATT+GGG | 0.268709 | 1.4:-56595214 | MS.gene036062:CDS |
| CAGGCCAAAATATTCCATTA+TGG | 0.292003 | 1.4:-56593321 | MS.gene036062:CDS |
| AATATCTTGCTCCTAACTTA+TGG | 0.303753 | 1.4:-56595150 | MS.gene036062:CDS |
| TAGGTTGGAGCAGATGAATT+TGG | 0.306305 | 1.4:-56593619 | MS.gene036062:CDS |
| ATGCCAACTGCCACGTTTGC+AGG | 0.308650 | 1.4:+56594087 | None:intergenic |
| TCCTAGTGCTGATATGCTTC+TGG | 0.311191 | 1.4:-56593461 | MS.gene036062:CDS |
| GCTTGTTGATACCTGTGTTT+TGG | 0.311203 | 1.4:+56595524 | None:intergenic |
| AGGTTGGAGCAGATGAATTT+GGG | 0.318393 | 1.4:-56593618 | MS.gene036062:CDS |
| CAATTAGAAGCTTCAAATTA+GGG | 0.324720 | 1.4:+56592921 | None:intergenic |
| CGAATTTGAGATTGGCACTA+TGG | 0.327098 | 1.4:-56593206 | MS.gene036062:CDS |
| GATGGTGTTCGTGAAATCTT+TGG | 0.335540 | 1.4:-56595452 | MS.gene036062:CDS |
| ATTGACAAGTTGACGGTAAA+CGG | 0.340168 | 1.4:+56595980 | None:intergenic |
| GGAACAAGCCGTGGAGAAAT+AGG | 0.348987 | 1.4:+56596026 | None:intergenic |
| TTTCGTTGCAGCCTTCTGTT+AGG | 0.355686 | 1.4:+56594202 | None:intergenic |
| TCCATCTCTCGTAATTATAA+AGG | 0.356597 | 1.4:+56595252 | None:intergenic |
| AGTGAACTGGTTGTTTGTTT+TGG | 0.359343 | 1.4:-56594177 | MS.gene036062:CDS |
| GCATATCAGCACTAGGATTT+CGG | 0.363456 | 1.4:+56593467 | None:intergenic |
| CAATCGGAAGTCTCAGGTTC+GGG | 0.374663 | 1.4:+56596005 | None:intergenic |
| AGCGCCTTTGCCTGGTTTCA+AGG | 0.378407 | 1.4:-56594127 | MS.gene036062:CDS |
| ACTTCTCTATTCCATAAGTT+AGG | 0.379694 | 1.4:+56595139 | None:intergenic |
| GAACTGGTATAATGAGCATA+TGG | 0.394625 | 1.4:-56593164 | MS.gene036062:CDS |
| CAAAATAACGTTGATACATC+TGG | 0.394700 | 1.4:-56593571 | MS.gene036062:CDS |
| TTATGGTCCTTACCTATGCT+TGG | 0.398206 | 1.4:+56595093 | None:intergenic |
| TCAAACTCATGGAACCATAA+TGG | 0.399197 | 1.4:+56593307 | None:intergenic |
| GATCGGAAAACAGAAACTTC+TGG | 0.409854 | 1.4:+56595865 | None:intergenic |
| TACCGTCAACTTGTCAATCT+CGG | 0.410049 | 1.4:-56595975 | MS.gene036062:CDS |
| AAACCAGGCAAAGGCGCTAT+TGG | 0.410782 | 1.4:+56594132 | None:intergenic |
| CATAGTGCCAATCTCAAATT+CGG | 0.415637 | 1.4:+56593207 | None:intergenic |
| TTGACAAGTTGACGGTAAAC+GGG | 0.424404 | 1.4:+56595981 | None:intergenic |
| ACCGTCAACTTGTCAATCTC+GGG | 0.430302 | 1.4:-56595974 | MS.gene036062:CDS |
| CCGCGATCACAATGATGAAC+TGG | 0.430736 | 1.4:-56592369 | MS.gene036062:CDS |
| CAACAAGCCCCTCCAGGTCC+AGG | 0.439462 | 1.4:-56595509 | MS.gene036062:CDS |
| TCCTCAAAATACTAGAGTAT+TGG | 0.441449 | 1.4:-56595215 | MS.gene036062:CDS |
| GTATGATCCGAATTTGAGAT+TGG | 0.448557 | 1.4:-56593214 | MS.gene036062:CDS |
| TTCAATCCCTGGACCTGGAG+GGG | 0.451763 | 1.4:+56595502 | None:intergenic |
| TCCTTTATAATTACGAGAGA+TGG | 0.453748 | 1.4:-56595253 | MS.gene036062:CDS |
| CAAGGTTGAAGGGCTTCAAT+AGG | 0.455073 | 1.4:+56595416 | None:intergenic |
| GCAGTTGGCATCTCTAAGTT+AGG | 0.458086 | 1.4:-56594075 | MS.gene036062:CDS |
| TGGCACTATGGCCAACAGCC+TGG | 0.458221 | 1.4:-56593194 | MS.gene036062:CDS |
| ATGCCAATAGCGCCTTTGCC+TGG | 0.458235 | 1.4:-56594135 | MS.gene036062:CDS |
| ATTTGAAACCTGAAATATGA+AGG | 0.469291 | 1.4:+56595758 | None:intergenic |
| CTGGTGATGCATTTGTTAGC+GGG | 0.470258 | 1.4:-56592564 | MS.gene036062:CDS |
| AAGGTATTTGTTGAGCATGC+TGG | 0.470269 | 1.4:-56594860 | MS.gene036062:CDS |
| TTGACGGTAAACGGGGCAAT+CGG | 0.470460 | 1.4:+56595989 | None:intergenic |
| AAGCTTCTAATTGTTACTGA+AGG | 0.479008 | 1.4:-56592911 | MS.gene036062:CDS |
| CTGCAACGAAACAAGTGAAC+TGG | 0.480208 | 1.4:-56594190 | MS.gene036062:CDS |
| AACTATTTGCATCAAAGTGC+AGG | 0.482101 | 1.4:+56592311 | None:intergenic |
| CTGCTTTCAATCCCTGGACC+TGG | 0.482436 | 1.4:+56595497 | None:intergenic |
| ATGATTGTCTTGAGGAACTA+GGG | 0.488616 | 1.4:-56595926 | MS.gene036062:CDS |
| AGGTAGAGGCTTATATACTT+TGG | 0.489318 | 1.4:+56596046 | None:intergenic |
| AGGCACCTGCTTTCAATCCC+TGG | 0.489668 | 1.4:+56595491 | None:intergenic |
| GGATCTAGCCGATATCATAA+AGG | 0.490697 | 1.4:-56593142 | MS.gene036062:intron |
| GAGGGTTTGCACAAGGTTGA+AGG | 0.493263 | 1.4:+56595405 | None:intergenic |
| GCAATCGGAAGTCTCAGGTT+CGG | 0.495053 | 1.4:+56596004 | None:intergenic |
| CTAATTGTTACTGAAGGGTC+GGG | 0.495709 | 1.4:-56592905 | MS.gene036062:CDS |
| ATACTTTGGATGCGTGTCTA+CGG | 0.496601 | 1.4:+56596060 | None:intergenic |
| GGCACTATGGCCAACAGCCT+GGG | 0.499713 | 1.4:-56593193 | MS.gene036062:CDS |
| TTTCAATCCCTGGACCTGGA+GGG | 0.500383 | 1.4:+56595501 | None:intergenic |
| ACGGGGCAATCGGAAGTCTC+AGG | 0.501039 | 1.4:+56595999 | None:intergenic |
| GATGATTGTCTTGAGGAACT+AGG | 0.501057 | 1.4:-56595927 | MS.gene036062:CDS |
| ACAGCCTGGGATGCTCGAAC+TGG | 0.503210 | 1.4:-56593180 | MS.gene036062:CDS |
| AATACAACATCATCATCATA+AGG | 0.505738 | 1.4:+56592959 | None:intergenic |
| CGTGTCTACGGCGACGGCGA+CGG | 0.506094 | 1.4:+56596072 | None:intergenic |
| CCAGCACCAGTTGTGTCAAA+AGG | 0.513580 | 1.4:+56592583 | None:intergenic |
| GATCTCAAATCTTGTGGTAG+TGG | 0.513628 | 1.4:-56595846 | MS.gene036062:CDS |
| TGAAATCTTTGGAATGGAGA+TGG | 0.519022 | 1.4:-56595441 | MS.gene036062:CDS |
| ACCCGAGATTGACAAGTTGA+CGG | 0.523923 | 1.4:+56595973 | None:intergenic |
| CGCGATCACAATGATGAACT+GGG | 0.525568 | 1.4:-56592368 | MS.gene036062:CDS |
| TATACCAGTTCGAGCATCCC+AGG | 0.528071 | 1.4:+56593176 | None:intergenic |
| CTTTCAATCCCTGGACCTGG+AGG | 0.535473 | 1.4:+56595500 | None:intergenic |
| TCTAATTGTTACTGAAGGGT+CGG | 0.537241 | 1.4:-56592906 | MS.gene036062:CDS |
| AGCTTCTAATTGTTACTGAA+GGG | 0.538689 | 1.4:-56592910 | MS.gene036062:CDS |
| AACTGGTATAATGAGCATAT+GGG | 0.540901 | 1.4:-56593163 | MS.gene036062:CDS |
| TGGATCATGAATCAAACTCA+TGG | 0.541261 | 1.4:+56593296 | None:intergenic |
| TTCATCTGCATTTATAAGCA+AGG | 0.548096 | 1.4:-56594049 | MS.gene036062:intron |
| TTAAAGGCACCTTCTTGATG+AGG | 0.548253 | 1.4:+56593416 | None:intergenic |
| TTCTAATGCCAGCACCCCAT+CGG | 0.553550 | 1.4:-56593536 | MS.gene036062:CDS |
| AGGGTTTGCACAAGGTTGAA+GGG | 0.557314 | 1.4:+56595406 | None:intergenic |
| GTTCGAGCATCCCAGGCTGT+TGG | 0.559305 | 1.4:+56593183 | None:intergenic |
| GAGAGATGGAAGATTGATGC+TGG | 0.559858 | 1.4:-56595239 | MS.gene036062:CDS |
| AGGCAAAGGCGCTATTGGCA+TGG | 0.559944 | 1.4:+56594137 | None:intergenic |
| GATCTCGAAACCACTCTCCA+TGG | 0.560331 | 1.4:-56595783 | MS.gene036062:CDS |
| TGTGATCGCGGCACATACAT+TGG | 0.564058 | 1.4:+56592381 | None:intergenic |
| AGGTATCAACAAGCCCCTCC+AGG | 0.564247 | 1.4:-56595515 | MS.gene036062:CDS |
| GTCTACGGCGACGGCGACGG+CGG | 0.569167 | 1.4:+56596075 | None:intergenic |
| AAAGGTTGATGATTGTCTTG+AGG | 0.571088 | 1.4:-56595934 | MS.gene036062:CDS |
| CTAGGAGTTTCCTTGAAACC+AGG | 0.572449 | 1.4:+56594117 | None:intergenic |
| TCAGGTTCGGGAACAAGCCG+TGG | 0.573994 | 1.4:+56596017 | None:intergenic |
| AATAGAGAAGTTAAAGCTGT+AGG | 0.574801 | 1.4:-56595127 | MS.gene036062:CDS |
| CAGGTCCAGGGATTGAAAGC+AGG | 0.576037 | 1.4:-56595496 | MS.gene036062:CDS |
| GTTGGCATCTCTAAGTTAGG+TGG | 0.579996 | 1.4:-56594072 | MS.gene036062:CDS |
| CATCGGTCAATGTCAACTGC+AGG | 0.580973 | 1.4:+56595471 | None:intergenic |
| CCTGAAATATGAAGGGACCA+TGG | 0.587522 | 1.4:+56595766 | None:intergenic |
| CTCAAAATACTAGAGTATTG+GGG | 0.587799 | 1.4:-56595213 | MS.gene036062:CDS |
| CAACCTTGTGCAAACCCTCG+TGG | 0.588601 | 1.4:-56595401 | MS.gene036062:CDS |
| AGCCGTGGAGAAATAGGTAG+AGG | 0.589860 | 1.4:+56596032 | None:intergenic |
| AAAGATTTCACGAACACCAT+CGG | 0.590581 | 1.4:+56595454 | None:intergenic |
| GTTTCCTTGAAACCAGGCAA+AGG | 0.590994 | 1.4:+56594123 | None:intergenic |
| GCTGGTGATGCATTTGTTAG+CGG | 0.592899 | 1.4:-56592565 | MS.gene036062:CDS |
| TCTGATGATCTCCTAACAGA+AGG | 0.595179 | 1.4:-56594213 | MS.gene036062:CDS |
| AATCCACGAGGGTTTGCACA+AGG | 0.595884 | 1.4:+56595398 | None:intergenic |
| TGTTCGTGAAATCTTTGGAA+TGG | 0.596865 | 1.4:-56595447 | MS.gene036062:CDS |
| CGATCACAATGATGAACTGG+GGG | 0.597067 | 1.4:-56592366 | MS.gene036062:CDS |
| AGATGAATTTGGGTATATGT+TGG | 0.599101 | 1.4:-56593608 | MS.gene036062:CDS |
| TTTGAAACCTGAAATATGAA+GGG | 0.600790 | 1.4:+56595759 | None:intergenic |
| AGCCTCTACCTATTTCTCCA+CGG | 0.601157 | 1.4:-56596034 | MS.gene036062:CDS |
| GCTCCTGCAAACGTGGCAGT+TGG | 0.602300 | 1.4:-56594090 | MS.gene036062:CDS |
| AACAAGCCCCTCCAGGTCCA+GGG | 0.602938 | 1.4:-56595508 | MS.gene036062:CDS |
| AGAGTCTTTAGCAATTCTCA+AGG | 0.603061 | 1.4:+56593251 | None:intergenic |
| TGGATGCGTGTCTACGGCGA+CGG | 0.603148 | 1.4:+56596066 | None:intergenic |
| GACTTCTTGTGTCCAAGCAT+AGG | 0.604267 | 1.4:-56595105 | MS.gene036062:intron |
| CCAGTTCATCATTGTGATCG+CGG | 0.604835 | 1.4:+56592369 | None:intergenic |
| GCAAGATGAACATACTTGCA+TGG | 0.608530 | 1.4:+56593276 | None:intergenic |
| TCAAAATACTAGAGTATTGG+GGG | 0.609179 | 1.4:-56595212 | MS.gene036062:CDS |
| TGATTGTAACCTCATCAAGA+AGG | 0.611345 | 1.4:-56593425 | MS.gene036062:intron |
| ACGTTTGCAGGAGCACCACT+AGG | 0.614116 | 1.4:+56594099 | None:intergenic |
| TAGTGGTGCTCCTGCAAACG+TGG | 0.615497 | 1.4:-56594097 | MS.gene036062:CDS |
| TCCGTTGTCCTCCAAAACAC+AGG | 0.617930 | 1.4:-56595535 | MS.gene036062:CDS |
| TGTGTCAAAAGGTTCAACAT+TGG | 0.633430 | 1.4:+56592594 | None:intergenic |
| ACTACCACAAGATTTGAGAT+CGG | 0.639485 | 1.4:+56595848 | None:intergenic |
| ATTGTTACTGAAGGGTCGGG+AGG | 0.643977 | 1.4:-56592902 | MS.gene036062:CDS |
| TATGAAGGGACCATGGAGAG+TGG | 0.644387 | 1.4:+56595773 | None:intergenic |
| TCCAGAAGCATATCAGCACT+AGG | 0.646459 | 1.4:+56593460 | None:intergenic |
| TGATTGTCTTGAGGAACTAG+GGG | 0.649113 | 1.4:-56595925 | MS.gene036062:CDS |
| GCGATCACAATGATGAACTG+GGG | 0.650415 | 1.4:-56592367 | MS.gene036062:CDS |
| TGGCAACCTTTAATCCACGA+GGG | 0.663227 | 1.4:+56595387 | None:intergenic |
| TGACAAGTTGACGGTAAACG+GGG | 0.664522 | 1.4:+56595982 | None:intergenic |
| CTGCAGTTGACATTGACCGA+TGG | 0.667088 | 1.4:-56595470 | MS.gene036062:CDS |
| TCAAATTCGGATCATACGAG+AGG | 0.668812 | 1.4:+56593220 | None:intergenic |
| ACGTTGATACATCTGGCATG+CGG | 0.696496 | 1.4:-56593564 | MS.gene036062:CDS |
| CAAAATACTAGAGTATTGGG+GGG | 0.698648 | 1.4:-56595211 | MS.gene036062:CDS |
| GTGGCAACCTTTAATCCACG+AGG | 0.710105 | 1.4:+56595386 | None:intergenic |
| GGTTTCAAGGAAACTCCTAG+TGG | 0.725966 | 1.4:-56594114 | MS.gene036062:CDS |
| GATTGTCTTGAGGAACTAGG+GGG | 0.726749 | 1.4:-56595924 | MS.gene036062:CDS |
| GGACTAGCTGATGATCTCAG+CGG | 0.757827 | 1.4:-56595187 | MS.gene036062:CDS |
| AGGTTGTAGATATTACACCA+AGG | 0.768244 | 1.4:-56592882 | MS.gene036062:intron |
| GATCACAATGATGAACTGGG+GGG | 0.788492 | 1.4:-56592365 | MS.gene036062:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAAAGTTTAATAAA+TGG | - | chr1.4:56593808-56593827 | MS.gene036062:intron | 10.0% |
| !! | AAGATAAAAGTTTAATAAAT+GGG | - | chr1.4:56593809-56593828 | MS.gene036062:intron | 10.0% |
| !!! | ATTTAATTTAACAATAGAAA+AGG | + | chr1.4:56594606-56594625 | None:intergenic | 10.0% |
| !!! | TTTAATTTAACAATAGAAAA+GGG | + | chr1.4:56594605-56594624 | None:intergenic | 10.0% |
| !! | AAAATTTACCTTTATGATAT+CGG | + | chr1.4:56595261-56595280 | None:intergenic | 15.0% |
| !! | ATTATACAGAATTAAACAAT+AGG | + | chr1.4:56595038-56595057 | None:intergenic | 15.0% |
| !!! | ACTTATTTGATTTAATTCTT+TGG | + | chr1.4:56593699-56593718 | None:intergenic | 15.0% |
| !! | AGTAAATACATGATATTTCT+AGG | + | chr1.4:56594645-56594664 | None:intergenic | 20.0% |
| !! | CTAATTAGCATAACTTAATA+AGG | - | chr1.4:56594052-56594071 | MS.gene036062:CDS | 20.0% |
| !! | GCAAAGAAAATAATAAAATG+AGG | + | chr1.4:56595593-56595612 | None:intergenic | 20.0% |
| !! | TAATAACCATGATTATAGAT+AGG | - | chr1.4:56593364-56593383 | MS.gene036062:intron | 20.0% |
| !! | TAGAAAAAAAATTGTGTGTT+TGG | - | chr1.4:56595927-56595946 | MS.gene036062:CDS | 20.0% |
| !! | TATTTATTGACATGGTTATT+TGG | - | chr1.4:56594380-56594399 | MS.gene036062:intron | 20.0% |
| !! | TGTAAAGTTGCAAAATAATT+TGG | - | chr1.4:56593668-56593687 | MS.gene036062:intron | 20.0% |
| !!! | ATTAAACAATAGGTCTTTTA+TGG | + | chr1.4:56595028-56595047 | None:intergenic | 20.0% |
| !!! | CATTTTTTTTGAAACAGATT+TGG | - | chr1.4:56594413-56594432 | MS.gene036062:intron | 20.0% |
| !!! | TATAATTTAATACTGATTGC+AGG | - | chr1.4:56595052-56595071 | MS.gene036062:intron | 20.0% |
| !!! | TTTGATTTAATTCTTTGGTA+TGG | + | chr1.4:56593694-56593713 | None:intergenic | 20.0% |
| !!! | TTTTGAATTCAACTATAACA+TGG | + | chr1.4:56593954-56593973 | None:intergenic | 20.0% |
| ! | AAATCTGAGTTAAATGACTT+TGG | + | chr1.4:56595544-56595563 | None:intergenic | 25.0% |
| ! | AATACAACATCATCATCATA+AGG | + | chr1.4:56595436-56595455 | None:intergenic | 25.0% |
| ! | AATAGAAGAATCATTTCACT+CGG | + | chr1.4:56594027-56594046 | None:intergenic | 25.0% |
| ! | AATCAACCTATCTATAATCA+TGG | + | chr1.4:56593373-56593392 | None:intergenic | 25.0% |
| ! | AATTTGAGTGAATCTCAAAT+TGG | - | chr1.4:56592734-56592753 | MS.gene036062:intron | 25.0% |
| ! | ACAATTAGAAGCTTCAAATT+AGG | + | chr1.4:56595475-56595494 | None:intergenic | 25.0% |
| ! | AGATTTGAACAAATCAAACA+TGG | + | chr1.4:56594464-56594483 | None:intergenic | 25.0% |
| ! | ATCTAACTCATTCAAATACT+AGG | + | chr1.4:56593610-56593629 | None:intergenic | 25.0% |
| ! | ATGTATGTATTGAGATGAAA+AGG | + | chr1.4:56593039-56593058 | None:intergenic | 25.0% |
| ! | CAATTAGAAGCTTCAAATTA+GGG | + | chr1.4:56595474-56595493 | None:intergenic | 25.0% |
| ! | GAATTACCTCAAAAATACTT+GGG | + | chr1.4:56595877-56595896 | None:intergenic | 25.0% |
| ! | TAAACAGAGATGGAAATTAA+AGG | + | chr1.4:56594995-56595014 | None:intergenic | 25.0% |
| ! | TAACAATAGAAAAGGGAAAA+AGG | + | chr1.4:56594598-56594617 | None:intergenic | 25.0% |
| ! | TAATTGTAAAAAAAGCCGAT+GGG | + | chr1.4:56594874-56594893 | None:intergenic | 25.0% |
| ! | TCTATGTCTATTTATTGACA+TGG | - | chr1.4:56594372-56594391 | MS.gene036062:intron | 25.0% |
| ! | TGAATTACCTCAAAAATACT+TGG | + | chr1.4:56595878-56595897 | None:intergenic | 25.0% |
| !! | AATTTTTGTGCAGGATTTTA+AGG | - | chr1.4:56595760-56595779 | MS.gene036062:intron | 25.0% |
| !! | ATTTGAAACCTGAAATATGA+AGG | + | chr1.4:56592637-56592656 | None:intergenic | 25.0% |
| !! | ATTTTTGTGCAGGATTTTAA+GGG | - | chr1.4:56595761-56595780 | MS.gene036062:intron | 25.0% |
| !! | TGATTACTAAATTTTTGTGC+AGG | - | chr1.4:56595751-56595770 | MS.gene036062:intron | 25.0% |
| !! | TTTGAAACCTGAAATATGAA+GGG | + | chr1.4:56592636-56592655 | None:intergenic | 25.0% |
| !!! | CAGATTTTAATTGTCTGAAT+AGG | - | chr1.4:56595557-56595576 | MS.gene036062:CDS | 25.0% |
| !!! | CTACAAGAAGTTTTATTCTT+AGG | + | chr1.4:56594679-56594698 | None:intergenic | 25.0% |
| !!! | GTTTTATTTGAAGAGAGAAA+AGG | - | chr1.4:56592440-56592459 | MS.gene036062:intron | 25.0% |
| !!! | TGTTTTGGTGAAATGTTAAT+AGG | - | chr1.4:56594230-56594249 | MS.gene036062:intron | 25.0% |
| !!! | TTTTTTACAATTAGAGCTGA+TGG | - | chr1.4:56594881-56594900 | MS.gene036062:intron | 25.0% |
| AAAAGGGAAAAAGGTAGAAT+GGG | + | chr1.4:56594589-56594608 | None:intergenic | 30.0% | |
| AACTATGCTCCTATATGATA+TGG | - | chr1.4:56592771-56592790 | MS.gene036062:intron | 30.0% | |
| AACTGGTATAATGAGCATAT+GGG | - | chr1.4:56595229-56595248 | MS.gene036062:CDS | 30.0% | |
| AACTTAATAAGGATGTTCTG+TGG | - | chr1.4:56594063-56594082 | MS.gene036062:CDS | 30.0% | |
| AAGCTTCTAATTGTTACTGA+AGG | - | chr1.4:56595481-56595500 | MS.gene036062:CDS | 30.0% | |
| AATAGAGAAGTTAAAGCTGT+AGG | - | chr1.4:56593265-56593284 | MS.gene036062:CDS | 30.0% | |
| AATATCTTGCTCCTAACTTA+TGG | - | chr1.4:56593242-56593261 | MS.gene036062:CDS | 30.0% | |
| AATTGTAAAAAAAGCCGATG+GGG | + | chr1.4:56594873-56594892 | None:intergenic | 30.0% | |
| ACTTCTCTATTCCATAAGTT+AGG | + | chr1.4:56593256-56593275 | None:intergenic | 30.0% | |
| AGATGAATTTGGGTATATGT+TGG | - | chr1.4:56594784-56594803 | MS.gene036062:intron | 30.0% | |
| AGCTTCTAATTGTTACTGAA+GGG | - | chr1.4:56595482-56595501 | MS.gene036062:CDS | 30.0% | |
| ATAGAAGAATCATTTCACTC+GGG | + | chr1.4:56594026-56594045 | None:intergenic | 30.0% | |
| ATCCAATGTCCATATCATAT+AGG | + | chr1.4:56592783-56592802 | None:intergenic | 30.0% | |
| ATTTCTGAGTATCATCATTG+TGG | + | chr1.4:56593449-56593468 | None:intergenic | 30.0% | |
| CAAAATAACGTTGATACATC+TGG | - | chr1.4:56594821-56594840 | MS.gene036062:intron | 30.0% | |
| CAGATATCTTTACACATTCT+AGG | - | chr1.4:56595896-56595915 | MS.gene036062:CDS | 30.0% | |
| CATATTATATCAGTCAGTCA+TGG | - | chr1.4:56593403-56593422 | MS.gene036062:intron | 30.0% | |
| CATGACTGACTGATATAATA+TGG | + | chr1.4:56593405-56593424 | None:intergenic | 30.0% | |
| CCATCTCTGTTTATAAAATG+TGG | - | chr1.4:56595002-56595021 | MS.gene036062:intron | 30.0% | |
| CTAATTGTAAAAAAAGCCGA+TGG | + | chr1.4:56594875-56594894 | None:intergenic | 30.0% | |
| GAAGAAAGAATGATATGCAA+TGG | + | chr1.4:56595327-56595346 | None:intergenic | 30.0% | |
| GATCACAACTAAATTCACAA+TGG | + | chr1.4:56593857-56593876 | None:intergenic | 30.0% | |
| GTAGTAGTATTCTGAATGTT+AGG | - | chr1.4:56594695-56594714 | MS.gene036062:intron | 30.0% | |
| GTTAAATGTCAGCAAAAAAG+TGG | - | chr1.4:56592494-56592513 | MS.gene036062:intron | 30.0% | |
| GTTATTACTGTATGATCACA+TGG | + | chr1.4:56593351-56593370 | None:intergenic | 30.0% | |
| TACAAGTAGTTTATGAAGCT+TGG | - | chr1.4:56593974-56593993 | MS.gene036062:intron | 30.0% | |
| TCCATCTCTCGTAATTATAA+AGG | + | chr1.4:56593143-56593162 | None:intergenic | 30.0% | |
| TCCTCAAAATACTAGAGTAT+TGG | - | chr1.4:56593177-56593196 | MS.gene036062:CDS | 30.0% | |
| TCCTTTATAATTACGAGAGA+TGG | - | chr1.4:56593139-56593158 | MS.gene036062:intron | 30.0% | |
| TGTGAATTTAGTTGTGATCT+AGG | - | chr1.4:56593858-56593877 | MS.gene036062:intron | 30.0% | |
| TTCATCTGCATTTATAAGCA+AGG | - | chr1.4:56594343-56594362 | MS.gene036062:intron | 30.0% | |
| ! | AGTGGTATACTTCATCTTTT+TGG | - | chr1.4:56592564-56592583 | MS.gene036062:CDS | 30.0% |
| ! | CCACATTTTATAAACAGAGA+TGG | + | chr1.4:56595005-56595024 | None:intergenic | 30.0% |
| ! | CCTCAAAATACTAGAGTATT+GGG | - | chr1.4:56593178-56593197 | MS.gene036062:CDS | 30.0% |
| ! | TTGTGGCAGAATTTTAAATG+CGG | + | chr1.4:56593432-56593451 | None:intergenic | 30.0% |
| !! | ACTTTTTCTTGTCAATGCTT+GGG | + | chr1.4:56593573-56593592 | None:intergenic | 30.0% |
| !! | ATGAAGTTATTTTGTGTGAC+AGG | - | chr1.4:56595955-56595974 | MS.gene036062:CDS | 30.0% |
| !! | CATCTTTTTGGTATAGAACT+TGG | - | chr1.4:56592576-56592595 | MS.gene036062:CDS | 30.0% |
| !! | CTCAAAATACTAGAGTATTG+GGG | - | chr1.4:56593179-56593198 | MS.gene036062:CDS | 30.0% |
| !! | GCTTGCTGTTATTAATGTAT+TGG | - | chr1.4:56592812-56592831 | MS.gene036062:intron | 30.0% |
| !! | GGAACCATAATGGAATATTT+TGG | + | chr1.4:56595078-56595097 | None:intergenic | 30.0% |
| !! | TCAAAATACTAGAGTATTGG+GGG | - | chr1.4:56593180-56593199 | MS.gene036062:CDS | 30.0% |
| !!! | ATTACTTTTTTGACTTGTGG+TGG | - | chr1.4:56595406-56595425 | MS.gene036062:CDS | 30.0% |
| !!! | GAGATTACTTTTTTGACTTG+TGG | - | chr1.4:56595403-56595422 | MS.gene036062:CDS | 30.0% |
| !!! | GTTGGTTCAAGTTTTTTTAC+TGG | + | chr1.4:56594138-56594157 | None:intergenic | 30.0% |
| !!! | TACTTTTTCTTGTCAATGCT+TGG | + | chr1.4:56593574-56593593 | None:intergenic | 30.0% |
| AAAGATTTCACGAACACCAT+CGG | + | chr1.4:56592941-56592960 | None:intergenic | 35.0% | |
| AAAGGGAAAAAGGTAGAATG+GGG | + | chr1.4:56594588-56594607 | None:intergenic | 35.0% | |
| AACTATTTGCATCAAAGTGC+AGG | + | chr1.4:56596084-56596103 | None:intergenic | 35.0% | |
| AAGCTTGGCTATTAGCTATT+AGG | - | chr1.4:56593989-56594008 | MS.gene036062:intron | 35.0% | |
| ACAATTTCGACACTCAATGA+CGG | - | chr1.4:56595669-56595688 | MS.gene036062:intron | 35.0% | |
| ACCTGCAAAACATGAATTGT+TGG | + | chr1.4:56594156-56594175 | None:intergenic | 35.0% | |
| AGAGTCTTTAGCAATTCTCA+AGG | + | chr1.4:56595144-56595163 | None:intergenic | 35.0% | |
| AGGTAGAGGCTTATATACTT+TGG | + | chr1.4:56592349-56592368 | None:intergenic | 35.0% | |
| AGGTTGTAGATATTACACCA+AGG | - | chr1.4:56595510-56595529 | MS.gene036062:CDS | 35.0% | |
| ATGATTGTCTTGAGGAACTA+GGG | - | chr1.4:56592466-56592485 | MS.gene036062:intron | 35.0% | |
| ATGGGAAGTTATAGTTGGTT+AGG | + | chr1.4:56594560-56594579 | None:intergenic | 35.0% | |
| CAGGCCAAAATATTCCATTA+TGG | - | chr1.4:56595071-56595090 | MS.gene036062:intron | 35.0% | |
| CATAGTGCCAATCTCAAATT+CGG | + | chr1.4:56595188-56595207 | None:intergenic | 35.0% | |
| CTCCTATATGATATGGACAT+TGG | - | chr1.4:56592778-56592797 | MS.gene036062:intron | 35.0% | |
| GAAAAGGGAAAAAGGTAGAA+TGG | + | chr1.4:56594590-56594609 | None:intergenic | 35.0% | |
| GAACTGGTATAATGAGCATA+TGG | - | chr1.4:56595228-56595247 | MS.gene036062:CDS | 35.0% | |
| GGTTTCTTGTTACTATCTTC+AGG | - | chr1.4:56594434-56594453 | MS.gene036062:intron | 35.0% | |
| TAACGTGGTTTCTATTCGAT+GGG | + | chr1.4:56594534-56594553 | None:intergenic | 35.0% | |
| TCAAACTCATGGAACCATAA+TGG | + | chr1.4:56595088-56595107 | None:intergenic | 35.0% | |
| TCATCAATTCTTCTGCATGA+AGG | - | chr1.4:56593901-56593920 | MS.gene036062:intron | 35.0% | |
| TCTAATTGTTACTGAAGGGT+CGG | - | chr1.4:56595486-56595505 | MS.gene036062:CDS | 35.0% | |
| TGATTGTAACCTCATCAAGA+AGG | - | chr1.4:56594967-56594986 | MS.gene036062:intron | 35.0% | |
| TGGAAATGGGAAGTTATAGT+TGG | + | chr1.4:56594565-56594584 | None:intergenic | 35.0% | |
| TGGATCATGAATCAAACTCA+TGG | + | chr1.4:56595099-56595118 | None:intergenic | 35.0% | |
| TGTGTCAAAAGGTTCAACAT+TGG | + | chr1.4:56595801-56595820 | None:intergenic | 35.0% | |
| TTAACGTGGTTTCTATTCGA+TGG | + | chr1.4:56594535-56594554 | None:intergenic | 35.0% | |
| TTAGGAATGTGAATCTATGC+TGG | - | chr1.4:56594713-56594732 | MS.gene036062:intron | 35.0% | |
| TTGCTCTTTATTCTGATGAG+TGG | - | chr1.4:56595609-56595628 | MS.gene036062:intron | 35.0% | |
| ! | AACTCCTTACCATGTGTTTT+AGG | - | chr1.4:56594754-56594773 | MS.gene036062:intron | 35.0% |
| ! | ACAGATCTATTGTTGCTTGT+AGG | - | chr1.4:56593108-56593127 | MS.gene036062:intron | 35.0% |
| ! | ACCAACAATTCATGTTTTGC+AGG | - | chr1.4:56594152-56594171 | MS.gene036062:CDS | 35.0% |
| ! | ACTACCACAAGATTTGAGAT+CGG | + | chr1.4:56592547-56592566 | None:intergenic | 35.0% |
| ! | AGTGAACTGGTTGTTTGTTT+TGG | - | chr1.4:56594215-56594234 | MS.gene036062:CDS | 35.0% |
| ! | ATTGACAAGTTGACGGTAAA+CGG | + | chr1.4:56592415-56592434 | None:intergenic | 35.0% |
| ! | CCCAATACTCTAGTATTTTG+AGG | + | chr1.4:56593181-56593200 | None:intergenic | 35.0% |
| ! | GCTGTTATTAATGTATTGGC+AGG | - | chr1.4:56592816-56592835 | MS.gene036062:intron | 35.0% |
| ! | GTATGATCCGAATTTGAGAT+TGG | - | chr1.4:56595178-56595197 | MS.gene036062:CDS | 35.0% |
| ! | TGGCGAAATATAACGCTTTT+TGG | + | chr1.4:56595994-56596013 | None:intergenic | 35.0% |
| ! | TGTTCGTGAAATCTTTGGAA+TGG | - | chr1.4:56592945-56592964 | MS.gene036062:CDS | 35.0% |
| ! | TTGTGATCTAGGATATGAAC+TGG | - | chr1.4:56593869-56593888 | MS.gene036062:intron | 35.0% |
| ! | TTTTCCGATCTCAAATCTTG+TGG | - | chr1.4:56592540-56592559 | MS.gene036062:CDS | 35.0% |
| ! | TTTTTACTGGTAGCACTCTA+GGG | + | chr1.4:56594125-56594144 | None:intergenic | 35.0% |
| !! | AAAGGTTGATGATTGTCTTG+AGG | - | chr1.4:56592458-56592477 | MS.gene036062:intron | 35.0% |
| !! | CAAAATACTAGAGTATTGGG+GGG | - | chr1.4:56593181-56593200 | MS.gene036062:CDS | 35.0% |
| !! | GATTTTAAGGGCAAAGTTAG+AGG | - | chr1.4:56595773-56595792 | MS.gene036062:CDS | 35.0% |
| !! | TAGTTGGTTAGGTTTTAACG+TGG | + | chr1.4:56594549-56594568 | None:intergenic | 35.0% |
| !! | TGAAATCTTTGGAATGGAGA+TGG | - | chr1.4:56592951-56592970 | MS.gene036062:CDS | 35.0% |
| !! | TTATTTTGTGTGACAGGATG+AGG | - | chr1.4:56595961-56595980 | MS.gene036062:CDS | 35.0% |
| !! | TTCTGACCCAAGTATTTTTG+AGG | - | chr1.4:56595868-56595887 | MS.gene036062:CDS | 35.0% |
| !!! | TTTTTTACTGGTAGCACTCT+AGG | + | chr1.4:56594126-56594145 | None:intergenic | 35.0% |
| AGGTTGGAGCAGATGAATTT+GGG | - | chr1.4:56594774-56594793 | MS.gene036062:intron | 40.0% | |
| ATACTTTGGATGCGTGTCTA+CGG | + | chr1.4:56592335-56592354 | None:intergenic | 40.0% | |
| CAGGTTGTAAAACTTGAGCA+AGG | - | chr1.4:56595696-56595715 | MS.gene036062:intron | 40.0% | |
| CCAACCTAAAACACATGGTA+AGG | + | chr1.4:56594761-56594780 | None:intergenic | 40.0% | |
| CCATAAACAGAGGAAGATCT+AGG | - | chr1.4:56593316-56593335 | MS.gene036062:CDS | 40.0% | |
| CCTAGATCTTCCTCTGTTTA+TGG | + | chr1.4:56593319-56593338 | None:intergenic | 40.0% | |
| CTAATTGTTACTGAAGGGTC+GGG | - | chr1.4:56595487-56595506 | MS.gene036062:CDS | 40.0% | |
| GATCGGAAAACAGAAACTTC+TGG | + | chr1.4:56592530-56592549 | None:intergenic | 40.0% | |
| GATCTCAAATCTTGTGGTAG+TGG | - | chr1.4:56592546-56592565 | MS.gene036062:CDS | 40.0% | |
| GATGATTGTCTTGAGGAACT+AGG | - | chr1.4:56592465-56592484 | MS.gene036062:intron | 40.0% | |
| GATGGTGTTCGTGAAATCTT+TGG | - | chr1.4:56592940-56592959 | MS.gene036062:CDS | 40.0% | |
| GCAAGATGAACATACTTGCA+TGG | + | chr1.4:56595119-56595138 | None:intergenic | 40.0% | |
| GCATATCAGCACTAGGATTT+CGG | + | chr1.4:56594928-56594947 | None:intergenic | 40.0% | |
| GGATCTAGCCGATATCATAA+AGG | - | chr1.4:56595250-56595269 | MS.gene036062:CDS | 40.0% | |
| TACCGTCAACTTGTCAATCT+CGG | - | chr1.4:56592417-56592436 | MS.gene036062:CDS | 40.0% | |
| TAGGTAAGGACCATAAACAG+AGG | - | chr1.4:56593306-56593325 | MS.gene036062:CDS | 40.0% | |
| TCAAATTCGGATCATACGAG+AGG | + | chr1.4:56595175-56595194 | None:intergenic | 40.0% | |
| TCTGATGATCTCCTAACAGA+AGG | - | chr1.4:56594179-56594198 | MS.gene036062:CDS | 40.0% | |
| TGAAGGTCATCATGGATTCA+TGG | - | chr1.4:56593918-56593937 | MS.gene036062:intron | 40.0% | |
| TGATTGTCTTGAGGAACTAG+GGG | - | chr1.4:56592467-56592486 | MS.gene036062:intron | 40.0% | |
| TTATGGTCCTTACCTATGCT+TGG | + | chr1.4:56593302-56593321 | None:intergenic | 40.0% | |
| ! | AAGGTATTTGTTGAGCATGC+TGG | - | chr1.4:56593532-56593551 | MS.gene036062:CDS | 40.0% |
| ! | CGAATTTGAGATTGGCACTA+TGG | - | chr1.4:56595186-56595205 | MS.gene036062:CDS | 40.0% |
| ! | GCATCTTTTGTAGGTAATGC+AGG | + | chr1.4:56596058-56596077 | None:intergenic | 40.0% |
| ! | GTTGAACCTTTTGACACAAC+TGG | - | chr1.4:56595803-56595822 | MS.gene036062:CDS | 40.0% |
| ! | TAGGTTGGAGCAGATGAATT+TGG | - | chr1.4:56594773-56594792 | MS.gene036062:intron | 40.0% |
| ! | TTGACAAGTTGACGGTAAAC+GGG | + | chr1.4:56592414-56592433 | None:intergenic | 40.0% |
| !! | CCTTACCATGTGTTTTAGGT+TGG | - | chr1.4:56594758-56594777 | MS.gene036062:intron | 40.0% |
| !! | GCTTGTTGATACCTGTGTTT+TGG | + | chr1.4:56592871-56592890 | None:intergenic | 40.0% |
| !! | TGATGAGTGGACTGAAATGT+TGG | - | chr1.4:56595622-56595641 | MS.gene036062:intron | 40.0% |
| !! | TGTTGATACCTGTGTTTTGG+AGG | + | chr1.4:56592868-56592887 | None:intergenic | 40.0% |
| !! | TTAAAGGCACCTTCTTGATG+AGG | + | chr1.4:56594979-56594998 | None:intergenic | 40.0% |
| !!! | TTTTGGTGCTAAATCGTCTC+TGG | - | chr1.4:56593500-56593519 | MS.gene036062:CDS | 40.0% |
| AAGGTAGAATGGGGTGGAAA+TGG | + | chr1.4:56594579-56594598 | None:intergenic | 45.0% | |
| ACCGTCAACTTGTCAATCTC+GGG | - | chr1.4:56592418-56592437 | MS.gene036062:CDS | 45.0% | |
| ACGTTGATACATCTGGCATG+CGG | - | chr1.4:56594828-56594847 | MS.gene036062:CDS | 45.0% | |
| AGGGTTTGCACAAGGTTGAA+GGG | + | chr1.4:56592989-56593008 | None:intergenic | 45.0% | |
| AGGTAGAATGGGGTGGAAAT+GGG | + | chr1.4:56594578-56594597 | None:intergenic | 45.0% | |
| CAAGGTTGAAGGGCTTCAAT+AGG | + | chr1.4:56592979-56592998 | None:intergenic | 45.0% | |
| CCAGTTCATCATTGTGATCG+CGG | + | chr1.4:56596026-56596045 | None:intergenic | 45.0% | |
| CCATGGTCCCTTCATATTTC+AGG | - | chr1.4:56592626-56592645 | MS.gene036062:intron | 45.0% | |
| CCTGAAATATGAAGGGACCA+TGG | + | chr1.4:56592629-56592648 | None:intergenic | 45.0% | |
| CGATCACAATGATGAACTGG+GGG | - | chr1.4:56596026-56596045 | MS.gene036062:CDS | 45.0% | |
| CGCGATCACAATGATGAACT+GGG | - | chr1.4:56596024-56596043 | MS.gene036062:CDS | 45.0% | |
| CTAGGAGTTTCCTTGAAACC+AGG | + | chr1.4:56594278-56594297 | None:intergenic | 45.0% | |
| CTATTCTCCTCTCCGAGTAA+GGG | - | chr1.4:56593077-56593096 | MS.gene036062:intron | 45.0% | |
| CTGCAACGAAACAAGTGAAC+TGG | - | chr1.4:56594202-56594221 | MS.gene036062:CDS | 45.0% | |
| CTGCTCCAACCTAAAACACA+TGG | + | chr1.4:56594766-56594785 | None:intergenic | 45.0% | |
| CTGTCAAGTTCACCCTTACT+CGG | + | chr1.4:56593092-56593111 | None:intergenic | 45.0% | |
| CTTCTGCATGAAGGTCATCA+TGG | - | chr1.4:56593910-56593929 | MS.gene036062:intron | 45.0% | |
| CTTGTGTCCAAGCATAGGTA+AGG | - | chr1.4:56593292-56593311 | MS.gene036062:CDS | 45.0% | |
| GACTTCTTGTGTCCAAGCAT+AGG | - | chr1.4:56593287-56593306 | MS.gene036062:CDS | 45.0% | |
| GAGAGATGGAAGATTGATGC+TGG | - | chr1.4:56593153-56593172 | MS.gene036062:CDS | 45.0% | |
| GAGATGAAAAGGATGTCTCG+TGG | + | chr1.4:56593028-56593047 | None:intergenic | 45.0% | |
| GATCACAATGATGAACTGGG+GGG | - | chr1.4:56596027-56596046 | MS.gene036062:CDS | 45.0% | |
| GATTGTCTTGAGGAACTAGG+GGG | - | chr1.4:56592468-56592487 | MS.gene036062:intron | 45.0% | |
| GCAGTTGGCATCTCTAAGTT+AGG | - | chr1.4:56594317-56594336 | MS.gene036062:intron | 45.0% | |
| GCGATCACAATGATGAACTG+GGG | - | chr1.4:56596025-56596044 | MS.gene036062:CDS | 45.0% | |
| GGTCATCATGGATTCATGGT+TGG | - | chr1.4:56593922-56593941 | MS.gene036062:intron | 45.0% | |
| GGTTTCAAGGAAACTCCTAG+TGG | - | chr1.4:56594278-56594297 | MS.gene036062:intron | 45.0% | |
| GTTGGCATCTCTAAGTTAGG+TGG | - | chr1.4:56594320-56594339 | MS.gene036062:intron | 45.0% | |
| GTTTCCTTGAAACCAGGCAA+AGG | + | chr1.4:56594272-56594291 | None:intergenic | 45.0% | |
| TGACTTTGGCAAGCTTACCT+TGG | + | chr1.4:56595530-56595549 | None:intergenic | 45.0% | |
| TGGCAACCTTTAATCCACGA+GGG | + | chr1.4:56593008-56593027 | None:intergenic | 45.0% | |
| TTTCGTTGCAGCCTTCTGTT+AGG | + | chr1.4:56594193-56594212 | None:intergenic | 45.0% | |
| ! | ACAGAGGAAGATCTAGGACT+AGG | - | chr1.4:56593322-56593341 | MS.gene036062:intron | 45.0% |
| ! | ACCCGAGATTGACAAGTTGA+CGG | + | chr1.4:56592422-56592441 | None:intergenic | 45.0% |
| ! | AGCCTCTACCTATTTCTCCA+CGG | - | chr1.4:56592358-56592377 | MS.gene036062:CDS | 45.0% |
| ! | CTGGTGATGCATTTGTTAGC+GGG | - | chr1.4:56595828-56595847 | MS.gene036062:CDS | 45.0% |
| ! | CTTGAGCAAGGTTTGCTTCT+AGG | - | chr1.4:56595708-56595727 | MS.gene036062:intron | 45.0% |
| ! | GCTGGTGATGCATTTGTTAG+CGG | - | chr1.4:56595827-56595846 | MS.gene036062:CDS | 45.0% |
| ! | TCCAGAAGCATATCAGCACT+AGG | + | chr1.4:56594935-56594954 | None:intergenic | 45.0% |
| ! | TGACAAGTTGACGGTAAACG+GGG | + | chr1.4:56592413-56592432 | None:intergenic | 45.0% |
| ! | TGCAAACCCTCGTGGATTAA+AGG | - | chr1.4:56592999-56593018 | MS.gene036062:CDS | 45.0% |
| ! | TGCAGGACAGCATCTTTTGT+AGG | + | chr1.4:56596067-56596086 | None:intergenic | 45.0% |
| !! | AATACTAGAGTATTGGGGGG+AGG | - | chr1.4:56593184-56593203 | MS.gene036062:CDS | 45.0% |
| !! | TCCTAGTGCTGATATGCTTC+TGG | - | chr1.4:56594931-56594950 | MS.gene036062:intron | 45.0% |
| !!! | ACCTGTGTTTTGGAGGACAA+CGG | + | chr1.4:56592861-56592880 | None:intergenic | 45.0% |
| !! | TATTATTATAATTATTGTTA+CGG | - | chr1.4:56592680-56592699 | MS.gene036062:intron | 5.0% |
| !!! | TCTTTTTTTTTTTTTTTTTT+TGG | - | chr1.4:56593483-56593502 | MS.gene036062:CDS | 5.0% |
| AAAAAAAGCCGATGGGGTGC+TGG | + | chr1.4:56594867-56594886 | None:intergenic | 50.0% | |
| AAGTTCACCCTTACTCGGAG+AGG | + | chr1.4:56593087-56593106 | None:intergenic | 50.0% | |
| AATCCACGAGGGTTTGCACA+AGG | + | chr1.4:56592997-56593016 | None:intergenic | 50.0% | |
| AGCCGTGGAGAAATAGGTAG+AGG | + | chr1.4:56592363-56592382 | None:intergenic | 50.0% | |
| ATTGTTACTGAAGGGTCGGG+AGG | - | chr1.4:56595490-56595509 | MS.gene036062:CDS | 50.0% | |
| CAATCGGAAGTCTCAGGTTC+GGG | + | chr1.4:56592390-56592409 | None:intergenic | 50.0% | |
| CATCGGTCAATGTCAACTGC+AGG | + | chr1.4:56592924-56592943 | None:intergenic | 50.0% | |
| CCAGCACCAGTTGTGTCAAA+AGG | + | chr1.4:56595812-56595831 | None:intergenic | 50.0% | |
| CCGCGATCACAATGATGAAC+TGG | - | chr1.4:56596023-56596042 | MS.gene036062:CDS | 50.0% | |
| CTGCAGTTGACATTGACCGA+TGG | - | chr1.4:56592922-56592941 | MS.gene036062:CDS | 50.0% | |
| GAGGGTTTGCACAAGGTTGA+AGG | + | chr1.4:56592990-56593009 | None:intergenic | 50.0% | |
| GATCTCGAAACCACTCTCCA+TGG | - | chr1.4:56592609-56592628 | MS.gene036062:CDS | 50.0% | |
| GCAATCGGAAGTCTCAGGTT+CGG | + | chr1.4:56592391-56592410 | None:intergenic | 50.0% | |
| GCTATTCTCCTCTCCGAGTA+AGG | - | chr1.4:56593076-56593095 | MS.gene036062:intron | 50.0% | |
| GGAACAAGCCGTGGAGAAAT+AGG | + | chr1.4:56592369-56592388 | None:intergenic | 50.0% | |
| GGGAAAAAGGTAGAATGGGG+TGG | + | chr1.4:56594585-56594604 | None:intergenic | 50.0% | |
| GTGGCAACCTTTAATCCACG+AGG | + | chr1.4:56593009-56593028 | None:intergenic | 50.0% | |
| TATACCAGTTCGAGCATCCC+AGG | + | chr1.4:56595219-56595238 | None:intergenic | 50.0% | |
| TATGAAGGGACCATGGAGAG+TGG | + | chr1.4:56592622-56592641 | None:intergenic | 50.0% | |
| TCCGTTGTCCTCCAAAACAC+AGG | - | chr1.4:56592857-56592876 | MS.gene036062:intron | 50.0% | |
| TCGTCTCTGGCTATGCTTGA+AGG | - | chr1.4:56593513-56593532 | MS.gene036062:CDS | 50.0% | |
| TGTGATCGCGGCACATACAT+TGG | + | chr1.4:56596014-56596033 | None:intergenic | 50.0% | |
| TTCTAATGCCAGCACCCCAT+CGG | - | chr1.4:56594856-56594875 | MS.gene036062:CDS | 50.0% | |
| TTGACGGTAAACGGGGCAAT+CGG | + | chr1.4:56592406-56592425 | None:intergenic | 50.0% | |
| TTTCAATCCCTGGACCTGGA+GGG | + | chr1.4:56592894-56592913 | None:intergenic | 50.0% | |
| ! | CCTTTTGACACAACTGGTGC+TGG | - | chr1.4:56595809-56595828 | MS.gene036062:CDS | 50.0% |
| !! | AAACCAGGCAAAGGCGCTAT+TGG | + | chr1.4:56594263-56594282 | None:intergenic | 50.0% |
| !! | GACACTCAATGACGGATAGC+AGG | - | chr1.4:56595677-56595696 | MS.gene036062:intron | 50.0% |
| !! | GGACTAGCTGATGATCTCAG+CGG | - | chr1.4:56593205-56593224 | MS.gene036062:CDS | 50.0% |
| AGCGCCTTTGCCTGGTTTCA+AGG | - | chr1.4:56594265-56594284 | MS.gene036062:intron | 55.0% | |
| AGGCACCTGCTTTCAATCCC+TGG | + | chr1.4:56592904-56592923 | None:intergenic | 55.0% | |
| AGGTATCAACAAGCCCCTCC+AGG | - | chr1.4:56592877-56592896 | MS.gene036062:intron | 55.0% | |
| ATGCCAACTGCCACGTTTGC+AGG | + | chr1.4:56594308-56594327 | None:intergenic | 55.0% | |
| ATGCCAATAGCGCCTTTGCC+TGG | - | chr1.4:56594257-56594276 | MS.gene036062:intron | 55.0% | |
| CAACCTTGTGCAAACCCTCG+TGG | - | chr1.4:56592991-56593010 | MS.gene036062:CDS | 55.0% | |
| CAGGTCCAGGGATTGAAAGC+AGG | - | chr1.4:56592896-56592915 | MS.gene036062:CDS | 55.0% | |
| CTGCTTTCAATCCCTGGACC+TGG | + | chr1.4:56592898-56592917 | None:intergenic | 55.0% | |
| CTTTCAATCCCTGGACCTGG+AGG | + | chr1.4:56592895-56592914 | None:intergenic | 55.0% | |
| TAGTGGTGCTCCTGCAAACG+TGG | - | chr1.4:56594295-56594314 | MS.gene036062:intron | 55.0% | |
| TTCAATCCCTGGACCTGGAG+GGG | + | chr1.4:56592893-56592912 | None:intergenic | 55.0% | |
| !! | ACGTTTGCAGGAGCACCACT+AGG | + | chr1.4:56594296-56594315 | None:intergenic | 55.0% |
| !! | AGGCAAAGGCGCTATTGGCA+TGG | + | chr1.4:56594258-56594277 | None:intergenic | 55.0% |
| AACAAGCCCCTCCAGGTCCA+GGG | - | chr1.4:56592884-56592903 | MS.gene036062:CDS | 60.0% | |
| ACAGCCTGGGATGCTCGAAC+TGG | - | chr1.4:56595212-56595231 | MS.gene036062:CDS | 60.0% | |
| ACGGGGCAATCGGAAGTCTC+AGG | + | chr1.4:56592396-56592415 | None:intergenic | 60.0% | |
| GCTCCTGCAAACGTGGCAGT+TGG | - | chr1.4:56594302-56594321 | MS.gene036062:intron | 60.0% | |
| GGCACTATGGCCAACAGCCT+GGG | - | chr1.4:56595199-56595218 | MS.gene036062:CDS | 60.0% | |
| GTTCGAGCATCCCAGGCTGT+TGG | + | chr1.4:56595212-56595231 | None:intergenic | 60.0% | |
| TCAGGTTCGGGAACAAGCCG+TGG | + | chr1.4:56592378-56592397 | None:intergenic | 60.0% | |
| TGGATGCGTGTCTACGGCGA+CGG | + | chr1.4:56592329-56592348 | None:intergenic | 60.0% | |
| TGGCACTATGGCCAACAGCC+TGG | - | chr1.4:56595198-56595217 | MS.gene036062:CDS | 60.0% | |
| CAACAAGCCCCTCCAGGTCC+AGG | - | chr1.4:56592883-56592902 | MS.gene036062:CDS | 65.0% | |
| CGTGTCTACGGCGACGGCGA+CGG | + | chr1.4:56592323-56592342 | None:intergenic | 70.0% | |
| GTCTACGGCGACGGCGACGG+CGG | + | chr1.4:56592320-56592339 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 56592300 | 56596114 | 56592300 | ID=MS.gene036062 |
| chr1.4 | mRNA | 56592300 | 56596114 | 56592300 | ID=MS.gene036062.t1;Parent=MS.gene036062 |
| chr1.4 | exon | 56595767 | 56596114 | 56595767 | ID=MS.gene036062.t1.exon1;Parent=MS.gene036062.t1 |
| chr1.4 | CDS | 56595767 | 56596114 | 56595767 | ID=cds.MS.gene036062.t1;Parent=MS.gene036062.t1 |
| chr1.4 | exon | 56595394 | 56595576 | 56595394 | ID=MS.gene036062.t1.exon2;Parent=MS.gene036062.t1 |
| chr1.4 | CDS | 56595394 | 56595576 | 56595394 | ID=cds.MS.gene036062.t1;Parent=MS.gene036062.t1 |
| chr1.4 | exon | 56595106 | 56595284 | 56595106 | ID=MS.gene036062.t1.exon3;Parent=MS.gene036062.t1 |
| chr1.4 | CDS | 56595106 | 56595284 | 56595106 | ID=cds.MS.gene036062.t1;Parent=MS.gene036062.t1 |
| chr1.4 | exon | 56594824 | 56594879 | 56594824 | ID=MS.gene036062.t1.exon4;Parent=MS.gene036062.t1 |
| chr1.4 | CDS | 56594824 | 56594879 | 56594824 | ID=cds.MS.gene036062.t1;Parent=MS.gene036062.t1 |
| chr1.4 | exon | 56594050 | 56594240 | 56594050 | ID=MS.gene036062.t1.exon5;Parent=MS.gene036062.t1 |
| chr1.4 | CDS | 56594050 | 56594240 | 56594050 | ID=cds.MS.gene036062.t1;Parent=MS.gene036062.t1 |
| chr1.4 | exon | 56593426 | 56593638 | 56593426 | ID=MS.gene036062.t1.exon6;Parent=MS.gene036062.t1 |
| chr1.4 | CDS | 56593426 | 56593638 | 56593426 | ID=cds.MS.gene036062.t1;Parent=MS.gene036062.t1 |
| chr1.4 | exon | 56593143 | 56593340 | 56593143 | ID=MS.gene036062.t1.exon7;Parent=MS.gene036062.t1 |
| chr1.4 | CDS | 56593143 | 56593340 | 56593143 | ID=cds.MS.gene036062.t1;Parent=MS.gene036062.t1 |
| chr1.4 | exon | 56592883 | 56593023 | 56592883 | ID=MS.gene036062.t1.exon8;Parent=MS.gene036062.t1 |
| chr1.4 | CDS | 56592883 | 56593023 | 56592883 | ID=cds.MS.gene036062.t1;Parent=MS.gene036062.t1 |
| chr1.4 | exon | 56592525 | 56592641 | 56592525 | ID=MS.gene036062.t1.exon9;Parent=MS.gene036062.t1 |
| chr1.4 | CDS | 56592525 | 56592641 | 56592525 | ID=cds.MS.gene036062.t1;Parent=MS.gene036062.t1 |
| chr1.4 | exon | 56592300 | 56592437 | 56592300 | ID=MS.gene036062.t1.exon10;Parent=MS.gene036062.t1 |
| chr1.4 | CDS | 56592300 | 56592437 | 56592300 | ID=cds.MS.gene036062.t1;Parent=MS.gene036062.t1 |
| Gene Sequence |
| Protein sequence |
